title "Hanah Margalit's promoter database from-75 to 25";
(* hanahdo 1.10*)
organism Ecoli;
chromosome Ecoli;
default out-of-range reduce-range;
default numbering piece;
(* default coordinate -ZERO; *)
piece aceB; get from 68 -75 to same +25;
piece aceE; get from 79 -75 to same +25;
piece ada; get from 75 -75 to same +25;
piece alaS; get from 76 -75 to same +25;
piece alkA; get from 76 -75 to same +25;
piece amn-P1; get from 76 -75 to same +25;
piece ampC; get from 75 -75 to same +25;
piece ansB; get from 75 -75 to same +25;
piece araBAD; get from 74 -75 to same +25;
piece araC; get from 72 -75 to same +25;
piece araE; get from 76 -75 to same +25;
piece araFGH; get from 75 -75 to same +25;
piece araJ; get from 74 -75 to same +25;
piece argCBH-P1; get from 74 -75 to same +25;
piece argCBH-P2; get from 54 -75 to same +25;
piece argE-P1; get from 77 -75 to same +25;
piece argE-P2; get from 79 -75 to same +25;
piece argF; get from 84 -75 to same +25;
piece argR-P1; get from 76 -75 to same +25;
piece argR-P2; get from 53 -75 to same +25;
piece aroF; get from 76 -75 to same +25;
piece aroG; get from 76 -75 to same +25;
piece aroH; get from 78 -75 to same +25;
piece aroP; get from 71 -75 to same +25;
piece asnB; get from 83 -75 to same +25;
piece aspC; get from 75 -75 to same +25;
piece atpB-P1; get from 79 -75 to same +25;
piece atpB-P2; get from 80 -75 to same +25;
piece atpI; get from 76 -75 to same +25;
piece bioA; get from 77 -75 to same +25;
piece bioB; get from 74 -75 to same +25;
piece btuB; get from 76 -75 to same +25;
piece c62.5; get from 78 -75 to same +25;
piece carAB-P1; get from 76 -75 to same +25;
piece carAB-P2; get from 78 -75 to same +25;
piece carB; get from 80 -75 to same +25;
piece cdh; get from 75 -75 to same +25;
piece cir-P1; get from 84 -75 to same +25;
piece cir-P2; get from 71 -75 to same +25;
piece clcA; get from 67 -75 to same +25;
piece clpB; get from 78 -75 to same +25;
piece clpP-P1; get from 76 -75 to same +25;
piece clpP-P2; get from 76 -75 to same +25;
piece crp; get from 71 -75 to same +25;
piece crr-P2-I; get from 77 -75 to same +25;
piece crr-P2-II; get from 76 -75 to same +25;
piece cspA-P1; get from 75 -75 to same +25;
piece cspA-P2; get from 69 -75 to same +25;
piece cya; get from 76 -75 to same +25;
piece cyoA; get from 76 -75 to same +25;
piece cysD; get from 74 -75 to same +25;
piece cysE; get from 85 -75 to same +25;
piece cysJIH; get from 77 -75 to same +25;
piece cysK-P1; get from 75 -75 to same +25;
piece cysK-P2; get from 72 -75 to same +25;
piece dapA; get from 76 -75 to same +25;
piece dapB; get from 76 -75 to same +25;
piece dapD; get from 65 -75 to same +25;
piece deo-P1; get from 76 -75 to same +25;
piece deo-P2; get from 76 -75 to same +25;
piece deo-P3; get from 76 -75 to same +25;
piece div; get from 73 -75 to same +25;
piece dnaA-P1; get from 76 -75 to same +25;
piece dnaA-P2; get from 77 -75 to same +25;
piece dnaK-P1; get from 67 -75 to same +25;
piece dnaK-P2; get from 81 -75 to same +25;
piece dnaN-P1; get from 77 -75 to same +25;
piece dnaN-P2; get from 79 -75 to same +25;
piece dnaN-P3; get from 81 -75 to same +25;
piece dnaN-P4; get from 82 -75 to same +25;
piece dnaN-P5; get from 83 -75 to same +25;
piece dnaQ-P1; get from 79 -75 to same +25;
piece dnaQ-P2; get from 80 -75 to same +25;
piece dnaT; get from 76 -75 to same +25;
piece drpA; get from 77 -75 to same +25;
piece dsda; get from 72 -75 to same +25;
piece fabB; get from 76 -75 to same +25;
piece fadL; get from 76 -75 to same +25;
piece fdhF; get from 76 -75 to same +25;
piece fepA; get from 78 -75 to same +25;
piece fes; get from 79 -75 to same +25;
piece flaA; get from 71 -75 to same +25;
piece frd; get from 71 -75 to same +25;
piece fumA; get from 69 -75 to same +25;
piece fur-Pa; get from 75 -75 to same +25;
piece g30k-rpmF-P1; get from 76 -75 to same +25;
piece g30k-rpmF-P2; get from 73 -75 to same +25;
piece gal-P1; get from 71 -75 to same +25;
piece gene-x; get from 77 -75 to same +25;
piece glnA-P1; get from 68 -75 to same +25;
piece glnA-P2; get from 78 -75 to same +25;
piece glnH-P1; get from 71 -75 to same +25;
piece glnH-P2; get from 72 -75 to same +25;
piece glnL; get from 77 -75 to same +25;
piece glnS; get from 71 -75 to same +25;
piece glpD; get from 75 -75 to same +25;
piece gltA-P1; get from 70 -75 to same +25;
piece gltA-P2; get from 74 -75 to same +25;
piece gltB; get from 78 -75 to same +25;
piece glyA; get from 78 -75 to same +25;
piece gnd; get from 75 -75 to same +25;
piece groE; get from 78 -75 to same +25;
piece grpE; get from 76 -75 to same +25;
piece guaBA; get from 71 -75 to same +25;
piece gut; get from 77 -75 to same +25;
piece gyrA; get from 75 -75 to same +25;
piece gyrB; get from 75 -75 to same +25;
piece hemA-P1; get from 76 -75 to same +25;
piece hemA-P2; get from 75 -75 to same +25;
piece hisA; get from 80 -75 to same +25;
piece hisB; get from 79 -75 to same +25;
piece hisG; get from 75 -75 to same +25;
piece hisS; get from 76 -75 to same +25;
piece hsd; get from 75 -75 to same +25;
piece htrA; get from 67 -75 to same +25;
piece ileR-P1; get from 70 -75 to same +25;
piece ileR-P2; get from 82 -75 to same +25;
piece ilvBN; get from 85 -75 to same +25;
piece ilvC; get from 80 -75 to same +25;
piece ilvGMEDA-P1; get from 76 -75 to same +25;
piece ilvGMEDA-P2; get from 70 -75 to same +25;
piece ilvGMEDA-Pe; get from 81 -75 to same +25;
piece ilvIH-P1; get from 77 -75 to same +25;
piece ilvIH-P2; get from 79 -75 to same +25;
piece ilvIH-P3; get from 75 -75 to same +25;
piece ilvIH-P3'; get from 74 -75 to same +25;
piece ilvIH-P3''; get from 80 -75 to same +25;
piece ilvIH-P4; get from 66 -75 to same +25;
piece ilvY; get from 79 -75 to same +25;
piece infC; get from 76 -75 to same +25;
piece katE; get from 66 -75 to same +25;
piece lac; get from 76 -75 to same +25;
piece lacI; get from 50 -75 to same +25;
piece lep; get from 79 -75 to same +25;
piece leu; get from 65 -75 to same +25;
piece lexA; get from 74 -75 to same +25;
piece livJ; get from 77 -75 to same +25;
piece livK; get from 83 -75 to same +25;
piece lpd; get from 73 -75 to same +25;
piece lpp; get from 75 -75 to same +25;
piece malE; get from 69 -75 to same +25;
piece malI; get from 81 -75 to same +25;
piece malK; get from 76 -75 to same +25;
piece malPQ; get from 76 -75 to same +25;
piece malT; get from 81 -75 to same +25;
piece manA; get from 70 -75 to same +25;
piece manX; get from 72 -75 to same +25;
piece melA; get from 76 -75 to same +25;
piece metA-P1; get from 77 -75 to same +25;
piece metA-P2; get from 75 -75 to same +25;
piece metBL; get from 73 -75 to same +25;
piece metj-P1; get from 77 -75 to same +25;
piece metj-P2; get from 75 -75 to same +25;
piece metj-P3; get from 76 -75 to same +25;
piece mtl; get from 67 -75 to same +25;
piece nagB-P1; get from 82 -75 to same +25;
piece nagB-P2; get from 66 -75 to same +25;
piece nagD; get from 75 -75 to same +25;
piece nagE; get from 84 -75 to same +25;
piece narG; get from 80 -75 to same +25;
piece nrd; get from 77 -75 to same +25;
piece nupG; get from 76 -75 to same +25;
piece nusA; get from 75 -75 to same +25;
piece ompA-P1; get from 80 -75 to same +25;
piece ompB; get from 75 -75 to same +25;
piece ompC; get from 68 -75 to same +25;
piece ompF; get from 68 -75 to same +25;
piece orf83-P1; get from 84 -75 to same +25;
piece orf83-P2; get from 77 -75 to same +25;
piece oxyR; get from 75 -75 to same +25;
piece p-Int~; get from 75 -75 to same +25;
piece pabA-P1; get from 76 -75 to same +25;
piece pabA-P2; get from 76 -75 to same +25;
piece pac; get from 78 -75 to same +25;
piece pckA; get from 81 -75 to same +25;
piece pdx; get from 77 -75 to same +25;
piece pepD-P1; get from 77 -75 to same +25;
piece pepD-P2; get from 82 -75 to same +25;
piece pfkB; get from 76 -75 to same +25;
piece pgsA; get from 76 -75 to same +25;
piece phe; get from 85 -75 to same +25;
piece pheST; get from 75 -75 to same +25;
piece phoB; get from 76 -75 to same +25;
piece phoE; get from 75 -75 to same +25;
piece pncB; get from 76 -75 to same +25;
piece pnp; get from 78 -75 to same +25;
piece ppc; get from 81 -75 to same +25;
piece proU-P1; get from 76 -75 to same +25;
piece proU-P2; get from 75 -75 to same +25;
piece proU-P3; get from 70 -75 to same +25;
piece prs; get from 76 -75 to same +25;
piece ptr; get from 77 -75 to same +25;
piece ptsH; get from 75 -75 to same +25;
piece purE; get from 75 -75 to same +25;
piece purF-P1; get from 75 -75 to same +25;
piece purF-P2; get from 77 -75 to same +25;
piece purHD; get from 76 -75 to same +25;
piece purMN; get from 75 -75 to same +25;
piece purR; get from 74 -75 to same +25;
piece putA; get from 71 -75 to same +25;
piece putP-P1; get from 69 -75 to same +25;
piece putP-P2; get from 76 -75 to same +25;
piece putP-P4; get from 77 -75 to same +25;
piece putP-P5; get from 81 -75 to same +25;
piece pX~; get from 73 -75 to same +25;
piece pyrBI-P1; get from 77 -75 to same +25;
piece pyrBI-P2; get from 75 -75 to same +25;
piece pyrC; get from 74 -75 to same +25;
piece pyrD; get from 80 -75 to same +25;
piece pyrE-P1; get from 77 -75 to same +25;
piece pyrE-P2; get from 77 -75 to same +25;
piece pyrF; get from 75 -75 to same +25;
piece pyrG-P1; get from 78 -75 to same +25;
piece pyrG-P2; get from 78 -75 to same +25;
piece rbs; get from 75 -75 to same +25;
piece recA; get from 76 -75 to same +25;
piece recF-P1; get from 78 -75 to same +25;
piece recF-P2; get from 84 -75 to same +25;
piece relA; get from 66 -75 to same +25;
piece rep; get from 79 -75 to same +25;
piece rho; get from 71 -75 to same +25;
piece rnh; get from 78 -75 to same +25;
piece rplJ; get from 76 -75 to same +25;
piece rplK; get from 77 -75 to same +25;
piece rplT; get from 76 -75 to same +25;
piece rpmH-P1; get from 77 -75 to same +25;
piece rpmH-P2; get from 70 -75 to same +25;
piece rpmH-P3; get from 70 -75 to same +25;
piece rpoB; get from 72 -75 to same +25;
piece rpoD-Pa; get from 77 -75 to same +25;
piece rpoD-Pb; get from 76 -75 to same +25;
piece rpoD-Phs; get from 78 -75 to same +25;
piece rpoH-P1; get from 61 -75 to same +25;
piece rpoH-P2; get from 76 -75 to same +25;
piece rpoH-P2*; get from 66 -75 to same +25;
piece rpsA-P1; get from 77 -75 to same +25;
piece rpsA-P3; get from 79 -75 to same +25;
piece rpsJ; get from 77 -75 to same +25;
piece rpsO; get from 76 -75 to same +25;
piece rpsU-P1; get from 72 -75 to same +25;
piece rpsU-P2; get from 74 -75 to same +25;
piece ruv-P1; get from 82 -75 to same +25;
piece ruv-P2; get from 85 -75 to same +25;
piece sbcB; get from 72 -75 to same +25;
piece sdh-P1; get from 74 -75 to same +25;
piece sdh-P2; get from 76 -75 to same +25;
piece secE; get from 82 -75 to same +25;
piece serB; get from 83 -75 to same +25;
piece serC; get from 79 -75 to same +25;
piece smp; get from 77 -75 to same +25;
piece sodB; get from 68 -75 to same +25;
piece spc; get from 77 -75 to same +25;
piece speB; get from 76 -75 to same +25;
piece speC-P1; get from 24 -75 to same +25;
piece speC-P2; get from 27 -75 to same +25;
piece speC-P3; get from 48 -75 to same +25;
piece ssb-P1; get from 79 -75 to same +25;
piece ssb-P2; get from 76 -75 to same +25;
piece str; get from 77 -75 to same +25;
piece sucAB; get from 83 -75 to same +25;
piece sulA; get from 85 -75 to same +25;
piece tnaA; get from 81 -75 to same +25;
piece tonB; get from 79 -75 to same +25;
piece treA; get from 81 -75 to same +25;
piece trmA; get from 76 -75 to same +25;
piece trp; get from 75 -75 to same +25;
piece trp-P2; get from 69 -75 to same +25;
piece trpR; get from 65 -75 to same +25;
piece trxA-P1; get from 79 -75 to same +25;
piece trxA-P2; get from 85 -75 to same +25;
piece tsx-P1; get from 76 -75 to same +25;
piece tsx-P2; get from 76 -75 to same +25;
piece tufB; get from 75 -75 to same +25;
piece tyrB; get from 76 -75 to same +25;
piece tyrP-P1; get from 75 -75 to same +25;
piece tyrP-P2; get from 67 -75 to same +25;
piece tyrR; get from 75 -75 to same +25;
piece udf-Px~; get from 77 -75 to same +25;
piece umu; get from 85 -75 to same +25;
piece ung; get from 68 -75 to same +25;
piece uvrA; get from 77 -75 to same +25;
piece uvrB-P1; get from 77 -75 to same +25;
piece uvrB-P2; get from 76 -75 to same +25;
piece uvrB-P3; get from 72 -75 to same +25;
piece uvrC-P2; get from 78 -75 to same +25;
piece uvrC-P3; get from 75 -75 to same +25;
piece uvrD-P1; get from 76 -75 to same +25;
piece uvrD-P2; get from 79 -75 to same +25;
piece uxuAB; get from 77 -75 to same +25;
piece valS-P1; get from 75 -75 to same +25;
piece zwf; get from 75 -75 to same +25;

(* malin 1.09 *)
(* alignment: 86, occurences: 264, H:    6.77276 bits *)

(* malin 1.09 *)
(* alignment: 86, occurences: 264, H:    6.77276 bits *)

(* malin 1.09 *)
(* alignment: 1, occurences: 54, H:    6.75935 bits *)
(* instshift 1.43, shifted -1 bases, no change to range, no splatter *)