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Finding cDNAs
UGID:2828810     UniGene Mm.440165     Mus musculus (mouse)   Atg4d Order cDNA clone, Links
Autophagy-related 4D (yeast) (Atg4d), mRNA (Atg4d)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_705811.8 APG4-D protein M. musculus 100.0 473
NP_116274.3 APG4 autophagy 4 homolog D H. sapiens 90.1 473
XP_001333093.2 PREDICTED: similar to APG4-D protein D. rerio 63.5 484
NP_001087417.1 MGC84754 protein X. laevis 61.4 468

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; intestine; mixed; skin; thyroid; extraembryonic tissue; bone marrow; bone; tongue; muscle; lung; mammary gland; spleen; uncharacterized tissue; inner ear; eye; connective tissue; kidney; thymus; liver; heart
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9 A3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

AK081605.1 Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130050M04 product:hypothetical protein, full insert sequence P
AK081002.1 Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930010L15 product:CDNA FLJ31648 FIS, CLONE NT2RI2004059 homolog [Homo sapiens], full insert sequence P
AK080353.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630064D23 product:APG4 (ATG4) autophagy-related homolog D (S. cerevisiae), full insert sequence P
AK044798.1 Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130002B06 product:APG4 (ATG4) autophagy-related homolog D (S. cerevisiae), full insert sequence P
AK036571.1 Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830134P12 product:hypothetical protein, full insert sequence P
AK087258.1 Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030040E19 product:weakly similar to PUTATIVE AUTOPHAGY-RELATED CYSTEINE ENDOPEPTIDASE [Homo sapiens], full insert sequence P
AK036282.1 Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630053I10 product:hypothetical protein, full insert sequence P
BC069851.1 Mus musculus autophagy-related 4D (yeast), mRNA (cDNA clone MGC:78029 IMAGE:6490007), complete cds PA
AK216578.1 Mus musculus cDNA, clone:Y2G0138N05, strand:unspecified
AK215761.1 Mus musculus cDNA, clone:Y2G0136B19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038895, based on BLAT search A
AK214019.1 Mus musculus cDNA, clone:Y2G0130F10, strand:unspecified
AK213738.1 Mus musculus cDNA, clone:Y2G0129F04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038895, based on BLAT search
AK213309.1 Mus musculus cDNA, clone:Y2G0127O18, strand:unspecified
AK207840.1 Mus musculus cDNA, clone:Y2G0109E20, strand:unspecified
AK205482.1 Mus musculus cDNA, clone:Y2G0101N09, strand:unspecified
AK154130.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630003I20 product:APG4 (ATG4) autophagy-related homolog D (S. cerevisiae), full insert sequence P
BC030861.1 Mus musculus autophagy-related 4D (yeast), mRNA (cDNA clone MGC:31226 IMAGE:4208700), complete cds PA
NM_153583.9 Mus musculus autophagy-related 4D (yeast) (Atg4d), mRNA P

EST sequences (10 of 128) [Show all sequences]

BY006640.1 Clone F530010J08 kidney 5' read P
BY006921.1 Clone G430008A13 brain 5' read
BY027495.1 Clone G930043P20 mammary gland 5' read P
BY031992.1 Clone I1C0009J20 embryonic tissue 5' read
BY088329.1 Clone K630070C12 intestine 5' read
BY174752.1 Clone F630004H14 uncharacterized tissue 5' read
BY201524.1 Clone F730107E03 skin 5' read P
BY233830.1 Clone F930032G13 inner ear 5' read P
BY237020.1 Clone F930050L06 inner ear 5' read P
BY274849.1 Clone K430309O20 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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