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Finding cDNAs
UGID:264158     UniGene Mm.28375     Mus musculus (mouse)   Sec61a1 Order cDNA clone, Links
Sec61 alpha 1 subunit (S. cerevisiae) (Sec61a1)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_001031476.1 protein transport protein sec61, putative A. thaliana 78.2 473
XP_958835.1 protein transport protein SEC61 alpha subunit N. crassa 73.4 473

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Expression Profile: View expression levels using UniGene's EST ProfileViewer
[Show more entries with profiles like this]
GEO profiles: Gene expression profiles in the NCBI Gene Expression Omnibus database
cDNA Sources: embryonic tissue; brain; mammary gland; mixed; uncharacterized tissue; skin; eye; pancreas; bone marrow; thymus; salivary gland; testis; liver; bone; oviduct; stomach; inner ear; lung; extraembryonic tissue; ovary; pineal gland; bladder; spleen; connective tissue; uterus; kidney; olfactory mucosa; intestine; pituitary gland; fertilized ovum; joint; vagina; dorsal root ganglion; heart; blood; nasopharynx; tongue; thyroid; muscle; sympathetic ganglion
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6 D1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (21)

AK088473.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430018I05 product:SEC61, alpha subunit (S. cerevisiae), full insert sequence P
AK077849.1 Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930418F06 product:SEC61, alpha subunit (S. cerevisiae), full insert sequence
BC006020.1 Mus musculus Sec61 alpha 1 subunit (S. cerevisiae), mRNA (cDNA clone IMAGE:3488736) PA
AK219834.1 Mus musculus cDNA, clone:Y2G0149M16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search P
AK206477.1 Mus musculus cDNA, clone:Y2G0104P22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search P
AK198895.1 Mus musculus cDNA, clone:Y1G0129H24, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search
AK197892.1 Mus musculus cDNA, clone:Y1G0126H20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search
AK197189.1 Mus musculus cDNA, clone:Y1G0124E21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search
AK197110.1 Mus musculus cDNA, clone:Y1G0124A20, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search P
AK196644.1 Mus musculus cDNA, clone:Y1G0122H13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search
AK195447.1 Mus musculus cDNA, clone:Y1G0118I07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search
AK193005.1 Mus musculus cDNA, clone:Y1G0110K20, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search
AK191725.1 Mus musculus cDNA, clone:Y1G0106M09, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032168, based on BLAT search
AK159349.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420017L22 product:Sec61 alpha 1 subunit (S. cerevisiae), full insert sequence P
AK167484.1 Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530016O21 product:Sec61 alpha 1 subunit (S. cerevisiae), full insert sequence P
AK153055.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830120D02 product:Sec61 alpha 1 subunit (S. cerevisiae), full insert sequence P
AB032902.1 Mus musculus Sec61 mRNA, complete cds P
NM_016906.4 Mus musculus Sec61 alpha 1 subunit (S. cerevisiae) (Sec61a1), mRNA
AF145253.1 Mus musculus Sec61 alpha isoform 1 mRNA, complete cds P
AF222743.1 Mus musculus Sec61 alpha-1 mRNA, complete cds P
BC003707.1 Mus musculus Sec61 alpha 1 subunit (S. cerevisiae), mRNA (cDNA clone MGC:5676 IMAGE:3592772), complete cds PA

EST sequences (10 of 954) [Show all sequences]

CA564230.1 Clone NIA:K0323G01_IMAGE:30056520 bone 5' read P
CA565977.1 Clone NIA:K0344E11_IMAGE:30058522 bone 5' read PM
CA566125.1 Clone NIA:K0346E05_IMAGE:30058708 bone 5' read P
CA566214.1 Clone NIA:K0347F07_IMAGE:30058818 bone 5' read PM
CA566826.1 Clone NIA:K0406E09_IMAGE:30059672 bone marrow 5' read
CA750220.1 Clone IMAGE:6828849 brain 5' read P
BY001690.1 Clone 4022405E12 embryonic tissue 5' read
BY007805.1 Clone G430046L08 mixed 5' read P
BY029805.1 Clone I0C0002J01 embryonic tissue 5' read
BY032826.1 Clone I530001A09 extraembryonic tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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