Uses of Package
org.biomage.Interface

Packages that use org.biomage.Interface
org.biomage.Array   
org.biomage.ArrayDesign   
org.biomage.AuditAndSecurity   
org.biomage.BQS   
org.biomage.BioAssay   
org.biomage.BioAssayData   
org.biomage.BioEvent   
org.biomage.BioMaterial   
org.biomage.BioSequence   
org.biomage.Common   
org.biomage.Description   
org.biomage.Description.Ontology   
org.biomage.DesignElement   
org.biomage.Experiment   
org.biomage.HigherLevelAnalysis   
org.biomage.Interface   
org.biomage.Measurement   
org.biomage.Protocol   
org.biomage.QuantitationType   
org.biomage.tools.helpers   
 

Classes in org.biomage.Interface used by org.biomage.Array
HasAdjustments
           
HasAdjustments.Adjustments_list
          Inner list class for holding multiple entries for attribute adjustments.
HasArrayDesign
           
HasArrayGroup
           
HasArrayManufactureDeviations
           
HasArrayManufactureDeviations.ArrayManufactureDeviations_list
          Inner list class for holding multiple entries for attribute arrayManufactureDeviations.
HasArrayManufacturers
           
HasArrayManufacturers.ArrayManufacturers_list
          Inner list class for holding multiple entries for attribute arrayManufacturers.
HasArrays
           
HasArrays.Arrays_list
          Inner list class for holding multiple entries for attribute arrays.
HasAuditTrail
           
HasBioMaterial
           
HasDefectType
           
HasDescriptions
           
HasDistanceUnit
           
HasFeature
           
HasFeatureDefects
           
HasFeatureDefects.FeatureDefects_list
          Inner list class for holding multiple entries for attribute featureDefects.
HasFeatureLIMSs
           
HasFeatureLIMSs.FeatureLIMSs_list
          Inner list class for holding multiple entries for attribute featureLIMSs.
HasFiducials
           
HasFiducials.Fiducials_list
          Inner list class for holding multiple entries for attribute fiducials.
HasFiducialType
           
HasIdentifierLIMS
           
HasInformation
           
HasPosition
           
HasPositionDelta
           
HasPropertySets
           
HasProtocolApplications
           
HasProtocolApplications.ProtocolApplications_list
          Inner list class for holding multiple entries for attribute protocolApplications.
HasQualityControlStatistics
           
HasQualityControlStatistics.QualityControlStatistics_list
          Inner list class for holding multiple entries for attribute qualityControlStatistics.
HasSecurity
           
HasSubstrateType
           
HasZone
           
 

Classes in org.biomage.Interface used by org.biomage.ArrayDesign
HasAuditTrail
           
HasCompositeGroups
           
HasCompositeGroups.CompositeGroups_list
          Inner list class for holding multiple entries for attribute compositeGroups.
HasCompositeSequences
           
HasCompositeSequences.CompositeSequences_list
          Inner list class for holding multiple entries for attribute compositeSequences.
HasDescriptions
           
HasDesignProviders
           
HasDesignProviders.DesignProviders_list
          Inner list class for holding multiple entries for attribute designProviders.
HasDistanceUnit
           
HasFeatureGroups
           
HasFeatureGroups.FeatureGroups_list
          Inner list class for holding multiple entries for attribute featureGroups.
HasFeatures
           
HasFeatures.Features_list
          Inner list class for holding multiple entries for attribute features.
HasFeatureShape
           
HasPropertySets
           
HasProtocolApplications
           
HasProtocolApplications.ProtocolApplications_list
          Inner list class for holding multiple entries for attribute protocolApplications.
HasReporterGroups
           
HasReporterGroups.ReporterGroups_list
          Inner list class for holding multiple entries for attribute reporterGroups.
HasReporters
           
HasReporters.Reporters_list
          Inner list class for holding multiple entries for attribute reporters.
HasSecurity
           
HasSpecies
           
HasSurfaceType
           
HasTechnologyType
           
HasTypes
           
HasTypes.Types_list
          Inner list class for holding multiple entries for attribute types.
HasZoneGroups
           
HasZoneGroups.ZoneGroups_list
          Inner list class for holding multiple entries for attribute zoneGroups.
HasZoneLayout
           
HasZoneLocations
           
HasZoneLocations.ZoneLocations_list
          Inner list class for holding multiple entries for attribute zoneLocations.
 

Classes in org.biomage.Interface used by org.biomage.AuditAndSecurity
HasAffiliation
           
HasAuditTrail
           
HasDescriptions
           
HasMembers
           
HasMembers.Members_list
          Inner list class for holding multiple entries for attribute members.
HasOwner
           
HasOwner.Owner_list
          Inner list class for holding multiple entries for attribute owner.
HasParent
           
HasPerformer
           
HasPropertySets
           
HasRoles
           
HasRoles.Roles_list
          Inner list class for holding multiple entries for attribute roles.
HasSecurity
           
HasSecurityGroups
           
HasSecurityGroups.SecurityGroups_list
          Inner list class for holding multiple entries for attribute securityGroups.
 

Classes in org.biomage.Interface used by org.biomage.BQS
HasAccessions
           
HasAccessions.Accessions_list
          Inner list class for holding multiple entries for attribute accessions.
HasAuditTrail
           
HasDescriptions
           
HasParameters
           
HasParameters.Parameters_list
          Inner list class for holding multiple entries for attribute parameters.
HasPropertySets
           
HasSecurity
           
 

Classes in org.biomage.Interface used by org.biomage.BioAssay
HasArray
           
HasAuditTrail
           
HasBioAssayCreation
           
HasBioAssayFactorValues
           
HasBioAssayFactorValues.BioAssayFactorValues_list
          Inner list class for holding multiple entries for attribute bioAssayFactorValues.
HasBioAssayTreatments
           
HasBioAssayTreatments.BioAssayTreatments_list
          Inner list class for holding multiple entries for attribute bioAssayTreatments.
HasChannels
           
HasChannels.Channels_list
          Inner list class for holding multiple entries for attribute channels.
HasDerivedBioAssayData
           
HasDerivedBioAssayData.DerivedBioAssayData_list
          Inner list class for holding multiple entries for attribute derivedBioAssayData.
HasDerivedBioAssayMap
           
HasDerivedBioAssayMap.DerivedBioAssayMap_list
          Inner list class for holding multiple entries for attribute derivedBioAssayMap.
HasDescriptions
           
HasFeatureExtraction
           
HasFormat
           
HasImages
           
HasImages.Images_list
          Inner list class for holding multiple entries for attribute images.
HasLabels
           
HasLabels.Labels_list
          Inner list class for holding multiple entries for attribute labels.
HasMeasuredBioAssayData
           
HasMeasuredBioAssayData.MeasuredBioAssayData_list
          Inner list class for holding multiple entries for attribute measuredBioAssayData.
HasMeasuredBioAssayTarget
           
HasPhysicalBioAssay
           
HasPhysicalBioAssayData
           
HasPhysicalBioAssayData.PhysicalBioAssayData_list
          Inner list class for holding multiple entries for attribute physicalBioAssayData.
HasPhysicalBioAssaySource
           
HasPhysicalBioAssayTarget
           
HasPropertySets
           
HasProtocolApplications
           
HasSecurity
           
HasSourceBioMaterialMeasurements
           
HasSourceBioMaterialMeasurements.SourceBioMaterialMeasurements_list
          Inner list class for holding multiple entries for attribute sourceBioMaterialMeasurements.
HasTarget
           
HasType
           
 

Classes in org.biomage.Interface used by org.biomage.BioAssayData
HasAuditTrail
           
HasBioAssayDataSources
           
HasBioAssayDataSources.BioAssayDataSources_list
          Inner list class for holding multiple entries for attribute bioAssayDataSources.
HasBioAssayDimension
           
HasBioAssayMapping
           
HasBioAssayMaps
           
HasBioAssayMaps.BioAssayMaps_list
          Inner list class for holding multiple entries for attribute bioAssayMaps.
HasBioAssayMapTarget
           
HasBioAssays
           
HasBioAssays.BioAssays_list
          Inner list class for holding multiple entries for attribute bioAssays.
HasBioAssayTupleData
           
HasBioAssayTupleData.BioAssayTuples_list
          Inner list class for holding multiple entries for attribute bioAssayTuples.
HasBioDataValues
           
HasCompositeSequences
           
HasCompositeSequences.CompositeSequences_list
          Inner list class for holding multiple entries for attribute compositeSequences.
HasContainedFeatures
           
HasContainedFeatures.ContainedFeatures_list
          Inner list class for holding multiple entries for attribute containedFeatures.
HasDerivedBioAssayDataTarget
           
HasDescriptions
           
HasDesignElementDimension
           
HasDesignElementMapping
           
HasDesignElementMaps
           
HasDesignElementMaps.DesignElementMaps_list
          Inner list class for holding multiple entries for attribute designElementMaps.
HasDesignElementTuples
           
HasDesignElementTuples.DesignElementTuples_list
          Inner list class for holding multiple entries for attribute designElementTuples.
HasProducerTransformation
           
HasPropertySets
           
HasProtocolApplications
           
HasQuantitationTypeDimension
           
HasQuantitationTypeMapping
           
HasQuantitationTypeMaps
           
HasQuantitationTypeMaps.QuantitationTypeMaps_list
          Inner list class for holding multiple entries for attribute quantitationTypeMaps.
HasQuantitationTypes
           
HasQuantitationTypes.QuantitationTypes_list
          Inner list class for holding multiple entries for attribute quantitationTypes.
HasQuantitationTypeTuples
           
HasQuantitationTypeTuples.QuantitationTypeTuples_list
          Inner list class for holding multiple entries for attribute quantitationTypeTuples.
HasReporters
           
HasReporters.Reporters_list
          Inner list class for holding multiple entries for attribute reporters.
HasSecurity
           
HasSourceBioAssays
           
HasSourceBioAssays.SourceBioAssays_list
          Inner list class for holding multiple entries for attribute sourceBioAssays.
HasSourcesQuantitationType
           
HasSourcesQuantitationType.SourcesQuantitationType_list
          Inner list class for holding multiple entries for attribute sourcesQuantitationType.
HasSummaryStatistics
           
HasSummaryStatistics.SummaryStatistics_list
          Inner list class for holding multiple entries for attribute summaryStatistics.
HasTargetQuantitationType
           
 

Classes in org.biomage.Interface used by org.biomage.BioEvent
HasAuditTrail
           
HasDescriptions
           
HasPropertySets
           
HasProtocolApplications
           
HasProtocolApplications.ProtocolApplications_list
          Inner list class for holding multiple entries for attribute protocolApplications.
HasSecurity
           
 

Classes in org.biomage.Interface used by org.biomage.BioMaterial
HasAction
           
HasActionMeasurement
           
HasAuditTrail
           
HasBioMaterial
           
HasCharacteristics
           
HasCharacteristics.Characteristics_list
          Inner list class for holding multiple entries for attribute characteristics.
HasComponentCompounds
           
HasComponentCompounds.ComponentCompounds_list
          Inner list class for holding multiple entries for attribute componentCompounds.
HasCompound
           
HasCompoundIndices
           
HasCompoundIndices.CompoundIndices_list
          Inner list class for holding multiple entries for attribute compoundIndices.
HasCompoundMeasurements
           
HasCompoundMeasurements.CompoundMeasurements_list
          Inner list class for holding multiple entries for attribute compoundMeasurements.
HasDescriptions
           
HasExternalLIMS
           
HasLabels
           
HasLabels.Labels_list
          Inner list class for holding multiple entries for attribute labels.
HasMaterialType
           
HasMeasurement
           
HasPropertySets
           
HasProtocolApplications
           
HasQualityControlStatistics
           
HasQualityControlStatistics.QualityControlStatistics_list
          Inner list class for holding multiple entries for attribute qualityControlStatistics.
HasSecurity
           
HasSourceBioMaterialMeasurements
           
HasSourceBioMaterialMeasurements.SourceBioMaterialMeasurements_list
          Inner list class for holding multiple entries for attribute sourceBioMaterialMeasurements.
HasSourceContact
           
HasSourceContact.SourceContact_list
          Inner list class for holding multiple entries for attribute sourceContact.
HasTopBioMaterial
           
HasTopBioMaterial.TopLevelBioMaterials_list
          Inner list class for holding multiple entries for attribute topLevelBioMaterials.
HasTreatments
           
HasTreatments.Treatments_list
          Inner list class for holding multiple entries for attribute treatments.
HasType
           
 

Classes in org.biomage.Interface used by org.biomage.BioSequence
HasAuditTrail
           
HasCoordinate
           
HasDescriptions
           
HasOntologyEntries
           
HasOntologyEntries.OntologyEntries_list
          Inner list class for holding multiple entries for attribute ontologyEntries.
HasPolymerType
           
HasPropertySets
           
HasRegions
           
HasRegions.Regions_list
          Inner list class for holding multiple entries for attribute regions.
HasSecurity
           
HasSeqFeatures
           
HasSeqFeatures.SeqFeatures_list
          Inner list class for holding multiple entries for attribute seqFeatures.
HasSequenceDatabases
           
HasSequenceDatabases.SequenceDatabases_list
          Inner list class for holding multiple entries for attribute sequenceDatabases.
HasSpecies
           
HasSubregions
           
HasSubregions.Subregions_list
          Inner list class for holding multiple entries for attribute subregions.
HasType
           
 

Classes in org.biomage.Interface used by org.biomage.Common
HasAuditTrail
           
HasAuditTrail.AuditTrail_list
          Inner list class for holding multiple entries for attribute auditTrail.
HasDescriptions
           
HasDescriptions.Descriptions_list
          Inner list class for holding multiple entries for attribute descriptions.
HasPropertySets
           
HasPropertySets.PropertySets_list
          Inner list class for holding multiple entries for attribute propertySets.
HasSecurity
           
 

Classes in org.biomage.Interface used by org.biomage.Description
HasAnnotations
           
HasAnnotations.Annotations_list
          Inner list class for holding multiple entries for attribute annotations.
HasAssociations
           
HasAssociations.Associations_list
          Inner list class for holding multiple entries for attribute associations.
HasAuditTrail
           
HasBibliographicReferences
           
HasBibliographicReferences.BibliographicReferences_list
          Inner list class for holding multiple entries for attribute bibliographicReferences.
HasContacts
           
HasContacts.Contacts_list
          Inner list class for holding multiple entries for attribute contacts.
HasDatabase
           
HasDatabaseReferences
           
HasDatabaseReferences.DatabaseReferences_list
          Inner list class for holding multiple entries for attribute databaseReferences.
HasDescriptions
           
HasExternalReference
           
HasOntologyReference
           
HasPropertySets
           
HasSecurity
           
HasType
           
 

Classes in org.biomage.Interface used by org.biomage.Description.Ontology
HasAssociations
           
HasAssociations.Associations_list
          Inner list class for holding multiple entries for attribute associations.
HasOntologyReference
           
HasPropertySets
           
 

Classes in org.biomage.Interface used by org.biomage.DesignElement
HasAuditTrail
           
HasBiologicalCharacteristics
           
HasBiologicalCharacteristics.BiologicalCharacteristics_list
          Inner list class for holding multiple entries for attribute biologicalCharacteristics.
HasComposite
           
HasCompositeCompositeMaps
           
HasCompositeCompositeMaps.CompositeCompositeMaps_list
          Inner list class for holding multiple entries for attribute compositeCompositeMaps.
HasCompositePositionSources
           
HasCompositePositionSources.CompositePositionSources_list
          Inner list class for holding multiple entries for attribute compositePositionSources.
HasCompositeSequence
           
HasControlFeatures
           
HasControlFeatures.ControlFeatures_list
          Inner list class for holding multiple entries for attribute controlFeatures.
HasControlledFeatures
           
HasControlledFeatures.ControlledFeatures_list
          Inner list class for holding multiple entries for attribute controlledFeatures.
HasControlType
           
HasDescriptions
           
HasDistanceUnit
           
HasFailTypes
           
HasFailTypes.FailTypes_list
          Inner list class for holding multiple entries for attribute failTypes.
HasFeature
           
HasFeatureGroup
           
HasFeatureInformationSources
           
HasFeatureInformationSources.FeatureInformationSources_list
          Inner list class for holding multiple entries for attribute featureInformationSources.
HasFeatureLocation
           
HasFeatureReporterMaps
           
HasFeatureReporterMaps.FeatureReporterMaps_list
          Inner list class for holding multiple entries for attribute featureReporterMaps.
HasImmobilizedCharacteristics
           
HasImmobilizedCharacteristics.ImmobilizedCharacteristics_list
          Inner list class for holding multiple entries for attribute immobilizedCharacteristics.
HasMismatchInformation
           
HasMismatchInformation.MismatchInformation_list
          Inner list class for holding multiple entries for attribute mismatchInformation.
HasPosition
           
HasPropertySets
           
HasProtocolApplications
           
HasReporter
           
HasReporterCompositeMaps
           
HasReporterCompositeMaps.ReporterCompositeMaps_list
          Inner list class for holding multiple entries for attribute reporterCompositeMaps.
HasReporterPositionSources
           
HasReporterPositionSources.ReporterPositionSources_list
          Inner list class for holding multiple entries for attribute reporterPositionSources.
HasSecurity
           
HasWarningType
           
HasZone
           
 

Classes in org.biomage.Interface used by org.biomage.Experiment
HasAnalysisResults
           
HasAnalysisResults.AnalysisResults_list
          Inner list class for holding multiple entries for attribute analysisResults.
HasAnnotations
           
HasAnnotations.Annotations_list
          Inner list class for holding multiple entries for attribute annotations.
HasAuditTrail
           
HasBioAssayData
           
HasBioAssayData.BioAssayData_list
          Inner list class for holding multiple entries for attribute bioAssayData.
HasBioAssays
           
HasBioAssays.BioAssays_list
          Inner list class for holding multiple entries for attribute bioAssays.
HasCategory
           
HasDescriptions
           
HasExperimentalFactor
           
HasExperimentalFactors
           
HasExperimentalFactors.ExperimentalFactors_list
          Inner list class for holding multiple entries for attribute experimentalFactors.
HasExperimentDesigns
           
HasExperimentDesigns.ExperimentDesigns_list
          Inner list class for holding multiple entries for attribute experimentDesigns.
HasFactorValues
           
HasFactorValues.FactorValues_list
          Inner list class for holding multiple entries for attribute factorValues.
HasMeasurement
           
HasNormalizationDescription
           
HasPropertySets
           
HasProviders
           
HasProviders.Providers_list
          Inner list class for holding multiple entries for attribute providers.
HasQualityControlDescription
           
HasReplicateDescription
           
HasSecurity
           
HasTopLevelBioAssays
           
HasTopLevelBioAssays.TopLevelBioAssays_list
          Inner list class for holding multiple entries for attribute topLevelBioAssays.
HasTypes
           
HasTypes.Types_list
          Inner list class for holding multiple entries for attribute types.
HasValue
           
 

Classes in org.biomage.Interface used by org.biomage.HigherLevelAnalysis
HasAuditTrail
           
HasBioAssayDimension
           
HasClusterBioAssayData
           
HasDataType
           
HasDescriptions
           
HasDesignElementDimension
           
HasNodeContents
           
HasNodeContents.NodeContents_list
          Inner list class for holding multiple entries for attribute nodeContents.
HasNodes
           
HasNodes.Nodes_list
          Inner list class for holding multiple entries for attribute nodes.
HasNodeValue
           
HasNodeValue.NodeValue_list
          Inner list class for holding multiple entries for attribute nodeValue.
HasPropertySets
           
HasQuantitationDimension
           
HasScale
           
HasSecurity
           
HasType
           
 

Classes in org.biomage.Interface used by org.biomage.Interface
HasAccessions.Accessions_list
          Inner list class for holding multiple entries for attribute accessions.
HasAdjustments.Adjustments_list
          Inner list class for holding multiple entries for attribute adjustments.
HasAnalysisResults.AnalysisResults_list
          Inner list class for holding multiple entries for attribute analysisResults.
HasAnnotations.Annotations_list
          Inner list class for holding multiple entries for attribute annotations.
HasArrayManufactureDeviations.ArrayManufactureDeviations_list
          Inner list class for holding multiple entries for attribute arrayManufactureDeviations.
HasArrayManufacturers.ArrayManufacturers_list
          Inner list class for holding multiple entries for attribute arrayManufacturers.
HasArrays.Arrays_list
          Inner list class for holding multiple entries for attribute arrays.
HasAssociations.Associations_list
          Inner list class for holding multiple entries for attribute associations.
HasAuditTrail.AuditTrail_list
          Inner list class for holding multiple entries for attribute auditTrail.
HasBibliographicReferences.BibliographicReferences_list
          Inner list class for holding multiple entries for attribute bibliographicReferences.
HasBioAssayData.BioAssayData_list
          Inner list class for holding multiple entries for attribute bioAssayData.
HasBioAssayDataSources.BioAssayDataSources_list
          Inner list class for holding multiple entries for attribute bioAssayDataSources.
HasBioAssayFactorValues.BioAssayFactorValues_list
          Inner list class for holding multiple entries for attribute bioAssayFactorValues.
HasBioAssayMaps.BioAssayMaps_list
          Inner list class for holding multiple entries for attribute bioAssayMaps.
HasBioAssays.BioAssays_list
          Inner list class for holding multiple entries for attribute bioAssays.
HasBioAssayTreatments.BioAssayTreatments_list
          Inner list class for holding multiple entries for attribute bioAssayTreatments.
HasBioAssayTupleData.BioAssayTuples_list
          Inner list class for holding multiple entries for attribute bioAssayTuples.
HasBiologicalCharacteristics.BiologicalCharacteristics_list
          Inner list class for holding multiple entries for attribute biologicalCharacteristics.
HasChannels.Channels_list
          Inner list class for holding multiple entries for attribute channels.
HasCharacteristics.Characteristics_list
          Inner list class for holding multiple entries for attribute characteristics.
HasComponentCompounds.ComponentCompounds_list
          Inner list class for holding multiple entries for attribute componentCompounds.
HasCompositeCompositeMaps.CompositeCompositeMaps_list
          Inner list class for holding multiple entries for attribute compositeCompositeMaps.
HasCompositeGroups.CompositeGroups_list
          Inner list class for holding multiple entries for attribute compositeGroups.
HasCompositePositionSources.CompositePositionSources_list
          Inner list class for holding multiple entries for attribute compositePositionSources.
HasCompositeSequences.CompositeSequences_list
          Inner list class for holding multiple entries for attribute compositeSequences.
HasCompoundIndices.CompoundIndices_list
          Inner list class for holding multiple entries for attribute compoundIndices.
HasCompoundMeasurements.CompoundMeasurements_list
          Inner list class for holding multiple entries for attribute compoundMeasurements.
HasConfidenceIndicators.ConfidenceIndicators_list
          Inner list class for holding multiple entries for attribute confidenceIndicators.
HasContacts.Contacts_list
          Inner list class for holding multiple entries for attribute contacts.
HasContainedFeatures.ContainedFeatures_list
          Inner list class for holding multiple entries for attribute containedFeatures.
HasControlFeatures.ControlFeatures_list
          Inner list class for holding multiple entries for attribute controlFeatures.
HasControlledFeatures.ControlledFeatures_list
          Inner list class for holding multiple entries for attribute controlledFeatures.
HasDatabaseReferences.DatabaseReferences_list
          Inner list class for holding multiple entries for attribute databaseReferences.
HasDerivedBioAssayData.DerivedBioAssayData_list
          Inner list class for holding multiple entries for attribute derivedBioAssayData.
HasDerivedBioAssayMap.DerivedBioAssayMap_list
          Inner list class for holding multiple entries for attribute derivedBioAssayMap.
HasDescriptions.Descriptions_list
          Inner list class for holding multiple entries for attribute descriptions.
HasDesignElementMaps.DesignElementMaps_list
          Inner list class for holding multiple entries for attribute designElementMaps.
HasDesignElementTuples.DesignElementTuples_list
          Inner list class for holding multiple entries for attribute designElementTuples.
HasDesignProviders.DesignProviders_list
          Inner list class for holding multiple entries for attribute designProviders.
HasExperimentalFactors.ExperimentalFactors_list
          Inner list class for holding multiple entries for attribute experimentalFactors.
HasExperimentDesigns.ExperimentDesigns_list
          Inner list class for holding multiple entries for attribute experimentDesigns.
HasFactorValues.FactorValues_list
          Inner list class for holding multiple entries for attribute factorValues.
HasFailTypes.FailTypes_list
          Inner list class for holding multiple entries for attribute failTypes.
HasFeatureDefects.FeatureDefects_list
          Inner list class for holding multiple entries for attribute featureDefects.
HasFeatureGroups.FeatureGroups_list
          Inner list class for holding multiple entries for attribute featureGroups.
HasFeatureInformationSources.FeatureInformationSources_list
          Inner list class for holding multiple entries for attribute featureInformationSources.
HasFeatureLIMSs.FeatureLIMSs_list
          Inner list class for holding multiple entries for attribute featureLIMSs.
HasFeatureReporterMaps.FeatureReporterMaps_list
          Inner list class for holding multiple entries for attribute featureReporterMaps.
HasFeatures.Features_list
          Inner list class for holding multiple entries for attribute features.
HasFiducials.Fiducials_list
          Inner list class for holding multiple entries for attribute fiducials.
HasHardwareApplications.HardwareApplications_list
          Inner list class for holding multiple entries for attribute hardwareApplications.
HasHardwareManufacturers.HardwareManufacturers_list
          Inner list class for holding multiple entries for attribute hardwareManufacturers.
HasHardwares.Hardwares_list
          Inner list class for holding multiple entries for attribute hardwares.
HasImages.Images_list
          Inner list class for holding multiple entries for attribute images.
HasImmobilizedCharacteristics.ImmobilizedCharacteristics_list
          Inner list class for holding multiple entries for attribute immobilizedCharacteristics.
HasLabels.Labels_list
          Inner list class for holding multiple entries for attribute labels.
HasMeasuredBioAssayData.MeasuredBioAssayData_list
          Inner list class for holding multiple entries for attribute measuredBioAssayData.
HasMembers.Members_list
          Inner list class for holding multiple entries for attribute members.
HasMismatchInformation.MismatchInformation_list
          Inner list class for holding multiple entries for attribute mismatchInformation.
HasNodeContents.NodeContents_list
          Inner list class for holding multiple entries for attribute nodeContents.
HasNodes.Nodes_list
          Inner list class for holding multiple entries for attribute nodes.
HasNodeValue.NodeValue_list
          Inner list class for holding multiple entries for attribute nodeValue.
HasOntologyEntries.OntologyEntries_list
          Inner list class for holding multiple entries for attribute ontologyEntries.
HasOwner.Owner_list
          Inner list class for holding multiple entries for attribute owner.
HasParameters.Parameters_list
          Inner list class for holding multiple entries for attribute parameters.
HasParameterTypes.ParameterTypes_list
          Inner list class for holding multiple entries for attribute parameterTypes.
HasParameterValues.ParameterValues_list
          Inner list class for holding multiple entries for attribute parameterValues.
HasPerformers.Performers_list
          Inner list class for holding multiple entries for attribute performers.
HasPhysicalBioAssayData.PhysicalBioAssayData_list
          Inner list class for holding multiple entries for attribute physicalBioAssayData.
HasPropertySets.PropertySets_list
          Inner list class for holding multiple entries for attribute propertySets.
HasProtocolApplications.ProtocolApplications_list
          Inner list class for holding multiple entries for attribute protocolApplications.
HasProviders.Providers_list
          Inner list class for holding multiple entries for attribute providers.
HasQualityControlStatistics.QualityControlStatistics_list
          Inner list class for holding multiple entries for attribute qualityControlStatistics.
HasQuantitationTypeMaps.QuantitationTypeMaps_list
          Inner list class for holding multiple entries for attribute quantitationTypeMaps.
HasQuantitationTypes.QuantitationTypes_list
          Inner list class for holding multiple entries for attribute quantitationTypes.
HasQuantitationTypeTuples.QuantitationTypeTuples_list
          Inner list class for holding multiple entries for attribute quantitationTypeTuples.
HasRegions.Regions_list
          Inner list class for holding multiple entries for attribute regions.
HasReporterCompositeMaps.ReporterCompositeMaps_list
          Inner list class for holding multiple entries for attribute reporterCompositeMaps.
HasReporterGroups.ReporterGroups_list
          Inner list class for holding multiple entries for attribute reporterGroups.
HasReporterPositionSources.ReporterPositionSources_list
          Inner list class for holding multiple entries for attribute reporterPositionSources.
HasReporters.Reporters_list
          Inner list class for holding multiple entries for attribute reporters.
HasRoles.Roles_list
          Inner list class for holding multiple entries for attribute roles.
HasSecurityGroups.SecurityGroups_list
          Inner list class for holding multiple entries for attribute securityGroups.
HasSeqFeatures.SeqFeatures_list
          Inner list class for holding multiple entries for attribute seqFeatures.
HasSequenceDatabases.SequenceDatabases_list
          Inner list class for holding multiple entries for attribute sequenceDatabases.
HasSoftwareApplications.SoftwareApplications_list
          Inner list class for holding multiple entries for attribute softwareApplications.
HasSoftwareManufacturers.SoftwareManufacturers_list
          Inner list class for holding multiple entries for attribute softwareManufacturers.
HasSoftwares.Softwares_list
          Inner list class for holding multiple entries for attribute softwares.
HasSourceBioAssays.SourceBioAssays_list
          Inner list class for holding multiple entries for attribute sourceBioAssays.
HasSourceBioMaterialMeasurements.SourceBioMaterialMeasurements_list
          Inner list class for holding multiple entries for attribute sourceBioMaterialMeasurements.
HasSourceContact.SourceContact_list
          Inner list class for holding multiple entries for attribute sourceContact.
HasSourcesQuantitationType.SourcesQuantitationType_list
          Inner list class for holding multiple entries for attribute sourcesQuantitationType.
HasSubregions.Subregions_list
          Inner list class for holding multiple entries for attribute subregions.
HasSummaryStatistics.SummaryStatistics_list
          Inner list class for holding multiple entries for attribute summaryStatistics.
HasTopBioMaterial.TopLevelBioMaterials_list
          Inner list class for holding multiple entries for attribute topLevelBioMaterials.
HasTopLevelBioAssays.TopLevelBioAssays_list
          Inner list class for holding multiple entries for attribute topLevelBioAssays.
HasTreatments.Treatments_list
          Inner list class for holding multiple entries for attribute treatments.
HasTypes.Types_list
          Inner list class for holding multiple entries for attribute types.
HasZoneGroups.ZoneGroups_list
          Inner list class for holding multiple entries for attribute zoneGroups.
HasZoneLocations.ZoneLocations_list
          Inner list class for holding multiple entries for attribute zoneLocations.
 

Classes in org.biomage.Interface used by org.biomage.Measurement
HasPropertySets
           
HasUnit
           
 

Classes in org.biomage.Interface used by org.biomage.Protocol
HasAuditTrail
           
HasDataType
           
HasDefaultValue
           
HasDescriptions
           
HasHardware
           
HasHardwareApplications
           
HasHardwareApplications.HardwareApplications_list
          Inner list class for holding multiple entries for attribute hardwareApplications.
HasHardwareManufacturers
           
HasHardwareManufacturers.HardwareManufacturers_list
          Inner list class for holding multiple entries for attribute hardwareManufacturers.
HasHardwares
           
HasHardwares.Hardwares_list
          Inner list class for holding multiple entries for attribute hardwares.
HasParameterType
           
HasParameterTypes
           
HasParameterTypes.ParameterTypes_list
          Inner list class for holding multiple entries for attribute parameterTypes.
HasParameterValues
           
HasParameterValues.ParameterValues_list
          Inner list class for holding multiple entries for attribute parameterValues.
HasPerformers
           
HasPerformers.Performers_list
          Inner list class for holding multiple entries for attribute performers.
HasPropertySets
           
HasProtocol
           
HasSecurity
           
HasSoftware
           
HasSoftwareApplications
           
HasSoftwareApplications.SoftwareApplications_list
          Inner list class for holding multiple entries for attribute softwareApplications.
HasSoftwareManufacturers
           
HasSoftwareManufacturers.SoftwareManufacturers_list
          Inner list class for holding multiple entries for attribute softwareManufacturers.
HasSoftwares
           
HasSoftwares.Softwares_list
          Inner list class for holding multiple entries for attribute softwares.
HasType
           
 

Classes in org.biomage.Interface used by org.biomage.QuantitationType
HasAuditTrail
           
HasChannel
           
HasConfidenceIndicators
           
HasConfidenceIndicators.ConfidenceIndicators_list
          Inner list class for holding multiple entries for attribute confidenceIndicators.
HasDataType
           
HasDescriptions
           
HasPropertySets
           
HasQuantitationTypeMaps
           
HasQuantitationTypeMaps.QuantitationTypeMaps_list
          Inner list class for holding multiple entries for attribute quantitationTypeMaps.
HasScale
           
HasSecurity
           
HasTargetQuantitationType
           
 

Classes in org.biomage.Interface used by org.biomage.tools.helpers
HasAssociations
           
HasDatabase
           
HasOntologyReference
           
HasPropertySets
           
HasType