|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use BioMaterial | |
---|---|
gov.nih.nci.caarray.services.biomaterial | |
gov.nih.nci.caarray.services.util.dataconverter.test | |
org.biomage.Array | |
org.biomage.BioMaterial | |
org.biomage.Interface |
Uses of BioMaterial in gov.nih.nci.caarray.services.biomaterial |
---|
Methods in gov.nih.nci.caarray.services.biomaterial that return BioMaterial | |
---|---|
BioMaterial |
BioMaterialManagerDB.getBioMaterial(long id)
Retrieve a BioMaterial |
BioMaterial[] |
BioMaterialManagerDB.getBioMaterials(BioMaterialSearchCriteria criteria)
|
protected BioMaterial[] |
BioMaterialManagerDB.getBioMaterials(BioMaterialSearchCriteria criteria,
java.lang.Class objectClass)
Get available BioMaterials. |
BioMaterial[] |
BioMaterialManagerDB.getTopMostSourceBioMaterials(BioMaterial bioMaterial)
Gets the parents of the specified bio material, which are in most cases bio sources. |
Methods in gov.nih.nci.caarray.services.biomaterial with parameters of type BioMaterial | |
---|---|
void |
BioMaterialManagerDB.clearBiomaterialFromCache(BioMaterial bioMaterialToClear)
Recursively removes a biomaterial and all it's parents from the cache, to be used after copying to make sure you get the latest copy from the database |
long |
BioMaterialManagerDB.copyBioMaterial(BioMaterial bioMaterialToCopy,
java.lang.Class sourceBioMaterialClass,
java.lang.String duplicateBioMaterialName,
java.lang.String owner)
Recursively copies the whole biomaterial tree Move heirarchicaly fromtop down. |
BioMaterial[] |
BioMaterialManagerDB.getTopMostSourceBioMaterials(BioMaterial bioMaterial)
Gets the parents of the specified bio material, which are in most cases bio sources. |
Uses of BioMaterial in gov.nih.nci.caarray.services.util.dataconverter.test |
---|
Methods in gov.nih.nci.caarray.services.util.dataconverter.test with parameters of type BioMaterial | |
---|---|
static void |
TestBioMaterialConversion.compare(BioMaterial material,
BioMaterialData data)
|
static void |
TestBioMaterialConversion.compare(BioMaterial material,
BioMaterialDesc desc)
|
Uses of BioMaterial in org.biomage.Array |
---|
Fields in org.biomage.Array declared as BioMaterial | |
---|---|
protected BioMaterial |
ManufactureLIMS.bioMaterial
The BioMaterial used for the feature. |
Methods in org.biomage.Array that return BioMaterial | |
---|---|
BioMaterial |
ManufactureLIMS.getBioMaterial()
Get method for bioMaterial |
Methods in org.biomage.Array with parameters of type BioMaterial | |
---|---|
void |
ManufactureLIMS.setBioMaterial(BioMaterial bioMaterial)
Set method for bioMaterial |
Uses of BioMaterial in org.biomage.BioMaterial |
---|
Subclasses of BioMaterial in org.biomage.BioMaterial | |
---|---|
class |
BioSample
BioSamples are products of treatments that are of interest. |
class |
BioSource
The BioSource is the original source material before any treatment events. |
class |
LabeledExtract
LabeledExtracts are special BioSamples that have Compounds which are detectable (these are often fluorescent or reactive moieties). |
Fields in org.biomage.BioMaterial declared as BioMaterial | |
---|---|
protected BioMaterial |
BioMaterialMeasurement.bioMaterial
A source BioMaterial for a treatment. |
Methods in org.biomage.BioMaterial that return BioMaterial | |
---|---|
BioMaterial |
BioMaterialMeasurement.getBioMaterial()
Get method for bioMaterial |
BioMaterial |
BioMaterial_package.getFromBioMaterial_list(int position)
Method to get BioMaterial from BioMaterial_list |
BioMaterial |
BioMaterial.getFromTopLevelBioMaterials(int position)
Method to get Treatment from Treatments_list |
Methods in org.biomage.BioMaterial with parameters of type BioMaterial | |
---|---|
void |
BioMaterial_package.addToBioMaterial_list(BioMaterial bioMaterial)
Method to add BioMaterial to BioMaterial_list |
void |
BioMaterial_package.addToBioMaterial_list(int position,
BioMaterial bioMaterial)
Method to add BioMaterial at position to BioMaterial_list |
void |
BioMaterial.addToTopLevelBioMaterials(BioMaterial bioMaterial)
Method to add Treatment to Treatments_list |
void |
BioMaterial.addToTopLevelBioMaterials(int position,
BioMaterial bioMaterial)
Method to add Treatment at position to Treatments_list |
void |
BioMaterial_package.removeFromBioMaterial_list(BioMaterial bioMaterial)
Method to remove first BioMaterial from BioMaterial_list |
void |
BioMaterial.removeFromTopLevelBioMaterials(BioMaterial bioMaterial)
Method to remove first Treatment from Treatments_list |
void |
BioMaterialMeasurement.setBioMaterial(BioMaterial bioMaterial)
Set method for bioMaterial |
Uses of BioMaterial in org.biomage.Interface |
---|
Methods in org.biomage.Interface that return BioMaterial | |
---|---|
BioMaterial |
HasBioMaterial.getBioMaterial()
Get method for bioMaterial |
BioMaterial |
HasTopBioMaterial.getFromTopLevelBioMaterials(int position)
Method to get BioMaterial from TopLevelBioMaterials_list |
Methods in org.biomage.Interface with parameters of type BioMaterial | |
---|---|
void |
HasTopBioMaterial.addToTopLevelBioMaterials(BioMaterial bioMaterial)
Method to add BioMaterial to TopLevelBioMaterials_list |
void |
HasTopBioMaterial.addToTopLevelBioMaterials(int position,
BioMaterial bioMaterial)
Method to add BioMaterial at position to TopLevelBioMaterials_list |
void |
HasTopBioMaterial.removeFromTopLevelBioMaterials(BioMaterial bioMaterial)
Method to remove first BioMaterial from TopLevelBioMaterials_list |
void |
HasBioMaterial.setBioMaterial(BioMaterial bioMaterial)
Set method for bioMaterial |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |