|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.BioEvent.BioEvent
org.biomage.BioAssay.BioAssayTreatment
public class BioAssayTreatment
The event which records the process by which PhysicalBioAssays are processed (typically washing, blocking, etc...).
Nested Class Summary |
---|
Nested classes/interfaces inherited from interface org.biomage.Interface.HasProtocolApplications |
---|
HasProtocolApplications.ProtocolApplications_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
---|
HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
---|
HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
---|
HasPropertySets.PropertySets_list |
Field Summary | |
---|---|
protected java.lang.String |
ojbConcreteClass
|
protected PhysicalBioAssay |
physicalBioAssay
The set of treatments undergone by this PhysicalBioAssay. |
protected PhysicalBioAssay |
target
The PhysicalBioAssay that was treated. |
Fields inherited from class org.biomage.Common.Describable |
---|
security |
Fields inherited from class org.biomage.Common.Extendable |
---|
editable, id, securedElementId |
Constructor Summary | |
---|---|
BioAssayTreatment()
Default constructor. |
|
BioAssayTreatment(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
---|---|
boolean |
emptyMAGEobject()
|
java.lang.String |
getModelClassName()
|
PhysicalBioAssay |
getPhysicalBioAssay()
Get method for physicalBioAssay |
PhysicalBioAssay |
getTarget()
Get method for target |
void |
setAttributes(org.xml.sax.Attributes atts)
|
void |
setPhysicalBioAssay(PhysicalBioAssay physicalBioAssay)
Set method for physicalBioAssay |
void |
setTarget(PhysicalBioAssay target)
Set method for target |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.BioEvent.BioEvent |
---|
addToProtocolApplications, addToProtocolApplications, getFromProtocolApplications, getProtocolApplications, removeElementAtFromProtocolApplications, removeFromProtocolApplications, setProtocolApplications |
Methods inherited from class org.biomage.Common.Identifiable |
---|
getIdentifier, getName, setIdentifier, setName, toString |
Methods inherited from class org.biomage.Common.Describable |
---|
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
---|
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
---|
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
---|
protected java.lang.String ojbConcreteClass
protected PhysicalBioAssay physicalBioAssay
protected PhysicalBioAssay target
Constructor Detail |
---|
public BioAssayTreatment()
public BioAssayTreatment(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
---|
public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class BioEvent
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class BioEvent
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class BioEvent
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class BioEvent
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class BioEvent
public void setPhysicalBioAssay(PhysicalBioAssay physicalBioAssay)
setPhysicalBioAssay
in interface HasPhysicalBioAssay
value
- to setpublic PhysicalBioAssay getPhysicalBioAssay()
getPhysicalBioAssay
in interface HasPhysicalBioAssay
public void setTarget(PhysicalBioAssay target)
setTarget
in interface HasTarget
value
- to setpublic PhysicalBioAssay getTarget()
getTarget
in interface HasTarget
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |