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gov.nih.* |
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gov.nih.nci.caarray.common.data.fileupload2.FileType | ||
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public static final java.lang.String |
CATEGORY_ARRAY_DESIGN |
"ARRAY_DESIGN" |
public static final java.lang.String |
CATEGORY_DERIVED_BIOASSAY |
"DERIVED_BIOASSAY" |
public static final java.lang.String |
CATEGORY_MAGEML |
"MAGEML" |
public static final java.lang.String |
CATEGORY_MEASURED_BIOASSAY |
"MEASURED_BIOASSAY" |
public static final java.lang.String |
CATEGORY_NON_PARSEABLE |
"NON_PARSEABLE" |
public static final java.lang.String |
CATEGORY_OTHER |
"OTHER" |
gov.nih.nci.caarray.common.data.vocab.VocabCategory | ||
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public static final java.lang.String |
ACTION |
"Action" |
public static final java.lang.String |
ACTION_LABELING |
"labeling" |
public static final java.lang.String |
ACTION_POOLING |
"pool" |
public static final java.lang.String |
ACTION_SPLITTING |
"split" |
public static final java.lang.String |
AGE_NR |
"Age" |
public static final java.lang.String |
ALLELE_NR |
"Allele" |
public static final java.lang.String |
ATMOSPHERE_NR |
"Atmosphere" |
public static final java.lang.String |
ATTACHMENT |
"attachment" |
public static final java.lang.String |
BARRIER_FACILITY_NR |
"BarrierFacility" |
public static final java.lang.String |
BEDDING_NR |
"Bedding" |
public static final java.lang.String |
BIOMETRICS_NR |
"Biometrics" |
public static final java.lang.String |
BIOSAMPLE_TYPE |
"BioSampleType" |
public static final java.lang.String |
BIOSOURCE_TYPE |
"BioSourceType" |
public static final java.lang.String |
CELL_LINE |
"CellLine" |
public static final java.lang.String |
CELL_TYPE |
"CellType" |
public static final java.lang.String |
CHROMOSOMAL_ABERRATION_NR |
"ChromosomalAberration" |
public static final java.lang.String |
CHROMOSOMAL_ABERRATION_TYPE |
"ChromosomalAberrationClassification" |
public static final java.lang.String |
CLINICAL_HISTORY_NR |
"ClinicalHistory" |
public static final java.lang.String |
CLINICAL_TEST_NR |
"ClinicalTest" |
public static final java.lang.String |
CLINICAL_TREATMENT_NR |
"ClinicalTreatment" |
public static final java.lang.String |
CULTIVAR |
"Cultivar" |
public static final java.lang.String |
DATA_TYPE |
"datatype" |
public static final java.lang.String |
DEVELOPMENTAL_STAGE |
"DevelopmentalStage" |
public static final java.lang.String |
DISEASE_LOCATION |
"DiseaseLocation" |
public static final java.lang.String |
DISEASE_STAGE |
"DiseaseStage" |
public static final java.lang.String |
DISEASE_STATE |
"DiseaseState" |
public static final java.lang.String |
DISTANCE_UNIT |
"DistanceUnit" |
public static final java.lang.String |
ECOTYPE |
"Ecotype" |
public static final java.lang.String |
ELEMENT_TYPE |
"elementtype" |
public static final java.lang.String |
ENVIRONMENTAL_HISTORY_DESIGN_NR |
"EnvironmentalHistoryDesign" |
public static final java.lang.String |
EXPERIMENT_DESIGN_TYPE |
"ExperimentDesignType" |
public static final java.lang.String |
EXPERIMENTAL_FACTOR_CATEGORY |
"ExperimentalFactorCategory" |
public static final java.lang.String |
FACTOR_VALUE |
"FactorValue" |
public static final java.lang.String |
FAMILY_HISTORY_NR |
"FamilyHistory" |
public static final java.lang.String |
GENERATION_NR |
"Generation" |
public static final java.lang.String |
GENETIC_MODIFICATION |
"GeneticModification" |
public static final java.lang.String |
GENOTYPE_NR |
"Genotype" |
public static final java.lang.String |
GEOGRAPHIC_LOCATION_NR |
"GeographicLocation" |
public static final java.lang.String |
HARDWARE_TYPE |
"HardwareType" |
public static final java.lang.String |
HISTOLOGY_NR |
"Histology" |
public static final java.lang.String |
HOST_NR |
"Host" |
public static final java.lang.String |
HUMIDITY_NR |
"Humidity" |
public static final java.lang.String |
INDIVIDUAL_NR |
"Individual" |
public static final java.lang.String |
INITIAL_TIME_POINT |
"InitialTimePoint" |
public static final java.lang.String |
LABEL_COMPOUND |
"LabelCompound" |
public static final java.lang.String |
LIGHT_NR |
"Light" |
public static final java.lang.String |
MASS_UNIT |
"MassUnit" |
public static final java.lang.String |
MATERIAL_TYPE |
"MaterialType" |
public static final java.lang.String |
MEDIA |
"Media" |
public static final java.lang.String |
NUTRIENTS_NR |
"Nutrients" |
public static final java.lang.String |
ORGANISM_PART |
"OrganismPart" |
public static final java.lang.String |
ORGANISM_STATUS |
"OrganismStatus" |
public static final java.lang.String |
ORIENTATION_MARK_POSITION |
"OrientationMarkPosition" |
public static final java.lang.String |
PATHOGEN_TEST_NR |
"PathogenTest" |
public static final java.lang.String |
PHENOTYPE_NR |
"Phenotype" |
public static final java.lang.String |
PLOIDY |
"Ploidy" |
public static final java.lang.String |
POLYMER_TYPE |
"polymertype" |
public static final java.lang.String |
POPULATION_DENSITY_NR |
"PopulationDensity" |
public static final java.lang.String |
PROTOCOL_ARRAY_MANUF |
"array_manufacturing_protocol" |
public static final java.lang.String |
PROTOCOL_DATA_TRANSFORMATION |
"DataTransformation" |
public static final java.lang.String |
PROTOCOL_FEATURE_EXTRACTION |
"feature_extraction" |
public static final java.lang.String |
PROTOCOL_HIGH_LEVEL_ANALYSIS |
"HigherLevelAnalysisProtocolType" |
public static final java.lang.String |
PROTOCOL_HYBRIDIZATION |
"hybridization" |
public static final java.lang.String |
PROTOCOL_IMAGE_ACQUISITION |
"image_acquisition" |
public static final java.lang.String |
PROTOCOL_TYPE |
"ProtocolType" |
public static final java.lang.String |
PUBLICATION_TYPE |
"PublicationType" |
public static final java.lang.String |
QUALITY_CONTROL_DESCRIPTION_TYPE |
"QualityControlDescriptionType" |
public static final java.lang.String |
ROLE |
"Roles" |
public static final java.lang.String |
ROLE_INVESTIGATOR |
"investigator" |
public static final java.lang.String |
ROLE_SUBMITTER |
"submitter" |
public static final java.lang.String |
SCALE |
"scale" |
public static final java.lang.String |
SEX |
"Sex" |
public static final java.lang.String |
SOFTWARE_TYPE |
"SoftwareType" |
public static final java.lang.String |
SPECIES |
"species" |
public static final java.lang.String |
STRAIN_OR_LINE |
"StrainOrLine" |
public static final java.lang.String |
STRANDEDNESS |
"strandedness" |
public static final java.lang.String |
SUBSTRATE_TYPE |
"substratetype" |
public static final java.lang.String |
SURFACE_TYPE |
"surfacetype" |
public static final java.lang.String |
TARGETED_CELL_TYPE |
"TargetedCellType" |
public static final java.lang.String |
TECHNOLOGY_TYPE |
"technologytype" |
public static final java.lang.String |
TEMPERATURE_NR |
"Temperature" |
public static final java.lang.String |
TIME_UNIT |
"TimeUnit" |
public static final java.lang.String |
TUMOR_GRADING |
"TumorGrading" |
public static final java.lang.String |
UNIT |
"Unit" |
public static final java.lang.String |
WATER_NR |
"Water" |
gov.nih.nci.caarray.common.delegate.CaSecurityManagerDelegate | ||
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public static final int |
LOCAL |
1 |
public static final int |
REMOTE |
0 |
gov.nih.nci.caarray.common.delegate.SecurityManagerDelegate | ||
---|---|---|
public static final int |
LOCAL |
1 |
public static final int |
REMOTE |
0 |
gov.nih.nci.caarray.common.exception.UIMessageConstants | ||
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public static final java.lang.String |
EJB_CREATE_EXCEPTION |
"Error communicating with the server." |
public static final java.lang.String |
EJB_REMOTE_EXCEPTION |
"Error communicating with the server." |
public static final java.lang.String |
EJB_REMOVE_EXCEPTION |
"Error communicating with the server." |
gov.nih.nci.caarray.common.util.CaArrayConstants | ||
---|---|---|
public static final java.lang.String |
HTTP_APPLET_ARRAYDESIGNADDUPDATEFORM |
"arraydesignAddUpdateForm" |
public static final java.lang.String |
HTTP_APPLET_FILETYPE_GAL |
"GAL" |
public static final java.lang.String |
HTTP_APPLET_FILEUPLOADDATAOBJECT |
"fileUploadDataObject" |
public static final java.lang.String |
HTTP_APPLET_FILEUPLOADSESSIONDATA |
"httpFileUploadSessionData" |
public static final java.lang.String |
HTTP_APPLET_MODE_STOP |
"stop" |
public static final java.lang.String |
HTTP_APPLET_MODE_SUCCESS |
"success" |
public static final java.lang.String |
HTTP_APPLET_MODULE_ARRAYDESIGN |
"arraydesign" |
public static final java.lang.String |
HTTP_APPLET_MODULE_HYBRIDIZATION |
"hybridization" |
public static final java.lang.String |
HTTP_APPLET_MODULE_MAGEML |
"mageml" |
public static final java.lang.String |
HTTP_APPLET_PARAMETER |
"httpAppletParams" |
public static final java.lang.String |
HTTP_APPLET_REQUEST_ID |
"id" |
public static final java.lang.String |
HTTP_APPLET_REQUEST_MODE |
"mode" |
public static final java.lang.String |
HTTP_APPLET_SOFTWARE_GENEPIX |
"GenePix" |
public static final java.lang.String |
HTTP_APPLET_SOFTWARE_UCSFSPOT |
"GenePix From UCSF Spot" |
public static final java.lang.String |
STRUTS_SUCCESS |
"success" |
gov.nih.nci.caarray.services.exception.ServerMessageConstants | ||
---|---|---|
public static final java.lang.String |
EJB_CREATE_EXCEPTION |
"Error creating EJB Home interface." |
public static final java.lang.String |
EJB_REMOTE_EXCEPTION |
"Error making remote method call." |
public static final java.lang.String |
EJB_REMOVE_EXCEPTION |
"Error removing EJB." |
gov.nih.nci.caarray.services.fileparse.FileMessageTypes | ||
---|---|---|
public static final java.lang.String |
ARRAY_DESIGN_MESSAGE |
"ARRAY_DESIGN_MESSAGE" |
public static final java.lang.String |
HYBRIDIZATION_FILE_MESSAGE |
"HYBRIDIZATION_FILE_MESSAGE" |
public static final java.lang.String |
MAGEML_MESSAGE |
"MAGEML_MESSAGE" |
gov.nih.nci.caarray.services.fileparse.test.Tester | ||
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public static final int |
LOCAL_MODE |
1 |
public static final int |
REMOTE_MODE |
2 |
gov.nih.nci.caarray.services.fileparse2.hybridization.SimpleDesignElement | ||
---|---|---|
public static final java.lang.String |
VALUE_DELIMITER |
"-" |
gov.nih.nci.caarray.services.fileparse2.parsers.ParserUtils | ||
---|---|---|
public static final java.lang.String |
TAB |
"\t" |
gov.nih.nci.caarray.services.fileupload2.mdb.FileUploadHandlerMDB | ||
---|---|---|
public static final java.lang.String |
QUEUE_CONN_FACTORY |
"UIL2ConnectionFactory" |
public static final java.lang.String |
QUEUE_NAME |
"queue/FileUploadHandlerQueue" |
gov.nih.nci.caarray.services.security.RdbmsAuthorizationDAObj | ||
---|---|---|
public static final java.lang.String |
EMPTY |
"" |
gov.nih.nci.caarray.services.security.mageom.DefaultSecuredElementIdUpdater | ||
---|---|---|
public static final int |
MAX_IN_CLAUSE_SIZE |
100 |
gov.nih.nci.caarray.services.security.mageom.SecuredElementIdUpdaterFactory | ||
---|---|---|
public static final java.lang.String |
DEFAULT_UPDATER |
"gov.nih.nci.caarray.services.security.mageom.DefaultSecuredElementIdUpdater" |
gov.nih.nci.caarray.services.security.mageom.SecuredElementUpdateListener | ||
---|---|---|
public static final java.lang.String |
CONNECTION_FACTORY_NAME |
"UIL2ConnectionFactory" |
public static final java.lang.String |
QUEUE_NAME |
"queue/SecuredElementUpdateQueue" |
gov.nih.nci.caarray.services.security.mageom.mdb.SecuredElementIdUpdaterMDB | ||
---|---|---|
public static final java.lang.String |
CONNECTION_FACTORY_NAME |
"UIL2ConnectionFactory" |
public static final int |
DEFAULT_MAX_ATTEMPTS |
4 |
public static final long |
DEFAULT_WAIT_TIME |
60000L |
public static final java.lang.String |
QUEUE_NAME |
"queue/SecuredElementUpdateQueue" |
gov.nih.nci.caarray.services.security.mageom.mdb.SecuredElementUpdateMessage | ||
---|---|---|
protected static final long |
serialVersionUID |
1234567890L |
gov.nih.nci.caarray.services.security.test.Tester | ||
---|---|---|
public static final int |
LOCAL_MODE |
1 |
public static final int |
REMOTE_MODE |
2 |
gov.nih.nci.caarray.services.test.Tester | ||
---|---|---|
public static final int |
LOCAL_MODE |
1 |
public static final int |
REMOTE_MODE |
2 |
gov.nih.nci.caarray.services.util.BaseSecuredElement | ||
---|---|---|
protected static final long |
serialVersionUID |
1234567890L |
gov.nih.nci.caarray.services.util.SecurityConstants | ||
---|---|---|
public static final java.lang.String |
APPLICATION |
"caarray" |
public static final java.lang.String |
ARRAY_DESIGN_MANAGER_ROLE |
"ArrayDesignManager" |
public static final java.lang.String |
BIO_MANAGER_ROLE |
"BiomaterialManager" |
public static final java.lang.String |
CURATOR_ROLE |
"Curator" |
public static final java.lang.String |
DEVELOPER_ROLE |
"Developer" |
public static final java.lang.String |
EXP_MANAGER_ROLE |
"ExperimentManager" |
public static final int |
FAILURE |
0 |
public static final java.lang.String |
GROUP_NAME |
"Roles" |
public static final java.lang.String |
MAGEML_MANAGER_ROLE |
"MAGEMLManager" |
public static final java.lang.String |
PRIMARY_PATH_DELIMITER |
";PRIMARY_PATH=" |
public static final long |
PRIVATE_VISIBILITY |
-1L |
public static final java.lang.String |
PROTOCOL_MANAGER_ROLE |
"ProtocolManager" |
public static final java.lang.String |
PUBLIC_GROUP |
"Public" |
public static final int |
SUCCESS |
1 |
public static final java.lang.String |
UNAUTHENTICATED_USER |
"Public" |
public static final java.lang.String |
USER_MANAGER_ROLE |
"UserManager" |
public static final java.lang.String |
USER_ROLE |
"User" |
public static final java.lang.String |
VOCABULARY_MANAGER_ROLE |
"VocabularyManager" |
gov.nih.nci.caarray.services.util.SecurityUtils | ||
---|---|---|
public static final int |
PROTECTION_GROUP_PRIVATE |
1 |
public static final int |
PROTECTION_GROUP_PUBLIC |
0 |
gov.nih.nci.caarray.services.util.cache.EHCacheHelper | ||
---|---|---|
public static final java.lang.String |
DEFAULT_REGION |
"ojbDefault" |
gov.nih.nci.caarray.services.util.cache.JCSHelper | ||
---|---|---|
public static final java.lang.String |
DEFAULT_REGION |
"carrayDefault" |
gov.nih.nci.caarray.services.util.db.ManagerDB | ||
---|---|---|
protected static final int |
CASCADE_LINK |
19 |
protected static final int |
CASCADE_NONE |
17 |
protected static final int |
CASCADE_OBJECT |
23 |
protected static final long |
ID_UNSET |
0L |
gov.nih.nci.caarray.services.util.db.PersistenceBrokerManager | ||
---|---|---|
public static final java.lang.String |
OJB_TX_MODE |
"ojb.tx.mode" |
public static final java.lang.String |
PROFILE_CAARRAY |
"PROFILE_MAGE_CAARRAY" |
public static final java.lang.String |
PROFILE_MAGEML_EXPORT |
"PROFILE_MAGEML_EXPORT" |
public static final java.lang.String |
PROFILE_MAGEML_IMPORT |
"PROFILE_MAGEML_IMPORT" |
public static final java.lang.String |
TX_MODE_LOCAL |
"LOCAL" |
gov.nih.nci.caarray.services.util.jms.DefaultJMSMessageHandler | ||
---|---|---|
public static final java.lang.String |
DEFAULT_QUEUE_CONN_FACT |
"UIL2ConnectionFactory" |
public static final java.lang.String |
DEFAULT_TOPIC_CONN_FACT |
"UIL2ConnectionFactory" |
gov.nih.nci.caarray.services.util.netcdf.test.Tester | ||
---|---|---|
public static final int |
LOCAL_MODE |
1 |
public static final int |
REMOTE_MODE |
2 |
gov.nih.nci.caarray.services.util.properties.CaArrayProperties | ||
---|---|---|
public static final java.lang.String |
ARRAY_DESIGN_FTP_DIR |
"caarray.ftp.arraydesign" |
public static final java.lang.String |
CAAMEL_CAARRAY_SERVERKEY |
"caamel.caarray.serverkey.name" |
public static final java.lang.String |
CAAMEL_URL |
"caamel.url" |
public static final java.lang.String |
CAARRAY_ADMIN_EMAIL |
"adminEmail" |
public static final java.lang.String |
CAARRAY_DATASOURCE |
"caarray.datasource" |
public static final java.lang.String |
CAARRAY_DATASOURCE_PASSWORD |
"caarray.datasource.password" |
public static final java.lang.String |
CAARRAY_DATASOURCE_USER |
"caarray.datasource.user" |
public static final java.lang.String |
CURATOR_EMAIL |
"curatorEmail" |
public static final java.lang.String |
EXPERIMENT_FTP_DIR |
"caarray.ftp.experiment" |
public static final java.lang.String |
FTP_ACTION_COMMAND |
"caarray.ftp.actionCommand" |
public static final java.lang.String |
FTP_APPLET_JAR |
"caarray.ftp.appletJar" |
public static final java.lang.String |
FTP_DESTINATION |
"caarray.ftp.destination" |
public static final java.lang.String |
FTP_ENDJMPTO_URL |
"caarray.ftp.endJumptoUrl" |
public static final java.lang.String |
FTP_PASSWORD |
"caarray.ftp.password" |
public static final java.lang.String |
FTP_SERVER_URL |
"caarray.ftp.serverURL" |
public static final java.lang.String |
FTP_USERNAME |
"caarray.ftp.username" |
public static final java.lang.String |
HTTP_APPLET_JAR |
"caarray.http.uploadapplet.appletJar" |
public static final java.lang.String |
HTTP_TUNNELING_URL |
"caarray.http.uploadapplet.httpTunnelingURL" |
public static final java.lang.String |
HTTP_UPLOAD_AFFYMETRIX |
"caarray.http.uploadapplet.affymetrix" |
public static final java.lang.String |
HTTP_UPLOAD_AGILENT |
"caarray.http.uploadapplet.agilent" |
public static final java.lang.String |
HTTP_UPLOAD_ARRAYDESIGN_AFFYMETRIX_CDF |
"caarray.http.uploadapplet.arraydesign.affymetrix.cdf" |
public static final java.lang.String |
HTTP_UPLOAD_ARRAYDESIGN_DEFAULT_TO |
"caarray.http.uploadapplet.arraydesign.defaultTo" |
public static final java.lang.String |
HTTP_UPLOAD_ARRAYDESIGN_GENEPIX |
"caarray.http.uploadapplet.arraydesign.genepix" |
public static final java.lang.String |
HTTP_UPLOAD_ARRAYDESIGN_ILLUMINA |
"caarray.http.uploadapplet.arraydesign.illumina" |
public static final java.lang.String |
HTTP_UPLOAD_ARRAYDESIGN_NOTIFY_URL |
"caarray.http.uploadapplet.arraydesign.notifyURL" |
public static final java.lang.String |
HTTP_UPLOAD_GENEPIX |
"caarray.http.uploadapplet.genepix" |
public static final java.lang.String |
HTTP_UPLOAD_HYBRIDIZATION_DEFAULT_TO |
"caarray.http.uploadapplet.hybridization.defaultTo" |
public static final java.lang.String |
HTTP_UPLOAD_HYBRIDIZATION_NOTIFY_URL |
"caarray.http.uploadapplet.hybridization.notifyURL" |
public static final java.lang.String |
HTTP_UPLOAD_ILLUMINA |
"caarray.http.uploadapplet.illumina" |
public static final java.lang.String |
HTTP_UPLOAD_IMAGENE |
"caarray.http.uploadapplet.imagene" |
public static final java.lang.String |
HTTP_UPLOAD_MAGEML |
"caarray.http.uploadapplet.mageml" |
public static final java.lang.String |
HTTP_UPLOAD_MAGEML_DEFAULT_TO |
"caarray.http.uploadapplet.mageml.defaultTo" |
public static final java.lang.String |
HTTP_UPLOAD_MAGEML_NOTIFY_URL |
"caarray.http.uploadapplet.mageml.notifyURL" |
public static final java.lang.String |
HTTP_UPLOAD_SERVLET_URL |
"caarray.http.uploadapplet.servletURL" |
public static final java.lang.String |
HTTP_UPLOAD_UCSF |
"caarray.http.uploadapplet.ucsf" |
public static final java.lang.String |
MAGE_IDENTIFIER_NAME_SPACE |
"mage.identifier.namespace" |
public static final java.lang.String |
MAGEML_DTD_LOCATION |
"mageml.dtd.location" |
public static final java.lang.String |
OJB_MAGEML_EXPORT_REPOSITORY |
"ojb.repository.mageml.export" |
public static final java.lang.String |
OJB_MAGEML_IMPORT_REPOSITORY |
"ojb.repository.mageml.import" |
public static final java.lang.String |
OJB_MAGEML_JCD_ALIAS |
"ojb.repository.mageml.jcdalias" |
public static final java.lang.String |
PARSING_TRANSACTION_TIMEOUT |
"caarray.parsing.transaction.timeout" |
public static final java.lang.String |
REGISTRATION_EMAIL |
"regEmail" |
public static final java.lang.String |
REGISTRATION_EMAIL_SUBJECT |
"caarray-registration.email.subject" |
public static final java.lang.String |
SECURITY_DATASOURCE |
"security.datasource" |
public static final java.lang.String |
SECURITY_DATASOURCE_PASSWORD |
"security.datasource.password" |
public static final java.lang.String |
SECURITY_DATASOURCE_USER |
"security.datasource.user" |
public static final java.lang.String |
SMTP_SERVER |
"smtp.server.hostname" |
gov.nih.nci.caarray.ui.StringFormatter | ||
---|---|---|
public static final java.lang.String |
breaker |
"<br>" |
public static final java.lang.String |
htmlSpace |
" " |
public static final java.lang.String |
newline |
"\r\n" |
public static final java.lang.String |
space |
" " |
public static final java.lang.String |
tab |
"\t" |
gov.nih.nci.caarray.ui.UIConstants | ||
---|---|---|
public static final java.lang.String |
ACCESS_DENIED_EXCEPTION_MSG |
"caArrayAccessDeniedException" |
public static final java.lang.String |
ACTION_ADD |
"add" |
public static final java.lang.String |
ACTION_SETUP |
"setup" |
public static final java.lang.String |
CEL_FILE |
"CEL" |
public static final java.lang.String |
CHP_FILE |
"CHP" |
public static final java.lang.String |
DISPLAY_TAG_PAGE |
"d-49653-p" |
public static final int |
DISPLAY_TAG_SIZE |
20 |
public static final java.lang.String |
EXP_FILE |
"EXP" |
public static final java.lang.String |
FORWARD_CANCEL |
"cancel" |
public static final java.lang.String |
FORWARD_SUCCESS |
"success" |
public static final java.lang.String |
GENERAL_EXCEPTION_MSG |
"caArrayGeneralException" |
public static final java.lang.String |
GPR_FILE |
"GPR" |
public static final java.lang.String |
GPS_FILE |
"GPS" |
public static final java.lang.String |
INSERT_OBJECT_EXCEPTION_MSG |
"caArrayInsertObjectException" |
public static final java.lang.String |
OBJECT_IN_USE_EXCEPTION_MSG |
"caArrayObjectInUseException" |
public static final java.lang.String |
OBJECT_NOT_FOUND_EXCEPTION_MSG |
"caArrayObjectNotFoundException" |
public static final java.lang.String |
OTHER_FILE |
"OTHER" |
public static final java.lang.String |
SECURITY_EXCEPTION_MSG |
"systemSecurityException" |
public static final java.lang.String |
TXT_FILE |
"TXT" |
public static final java.lang.String |
VISIBILITY_NOT_SELECTED |
"notSelected" |
public static final java.lang.String |
VISIBILITY_SELECTED |
"selected" |
gov.nih.nci.caarray.ui.arraydesign.ArrayDesignConstants | ||
---|---|---|
public static final java.lang.String |
REPORTER_TYPE_GENBANK |
"GenBank" |
public static final java.lang.String |
REPORTER_TYPE_UNIGENE |
"Unigene" |
public static final int |
UPLOAD_TYPE_AFFYMETRIX_CDF |
4 |
public static final java.lang.String |
UPLOAD_TYPE_AFFYMETRIX_CDF_DB |
"Affymetrix CDF" |
public static final java.lang.String |
UPLOAD_TYPE_AFFYMETRIX_CDF_DISPLAY |
"Affymetrix CDF" |
public static final int |
UPLOAD_TYPE_GAL |
2 |
public static final java.lang.String |
UPLOAD_TYPE_GAL_DB |
"GAL" |
public static final java.lang.String |
UPLOAD_TYPE_GAL_DISPLAY |
"GAL file" |
public static final int |
UPLOAD_TYPE_ILLUMINA |
5 |
public static final java.lang.String |
UPLOAD_TYPE_ILLUMINA_DB |
"Illumina Content Descriptor CSV" |
public static final java.lang.String |
UPLOAD_TYPE_ILLUMINA_DISPLAY |
"Illumina Content Descriptor CSV" |
public static final int |
UPLOAD_TYPE_MAGEML |
1 |
public static final java.lang.String |
UPLOAD_TYPE_MAGEML_DB |
"MAGE-ML" |
public static final java.lang.String |
UPLOAD_TYPE_MAGEML_DISPLAY |
"MAGE-ML" |
public static final int |
UPLOAD_TYPE_UCSF_SPOT_GAL |
3 |
public static final java.lang.String |
UPLOAD_TYPE_UCSF_SPOT_GAL_DB |
"GAL" |
public static final java.lang.String |
UPLOAD_TYPE_UCSF_SPOT_GAL_DISPLAY |
"GAL converted from UCSF Spot" |
gov.nih.nci.caarray.ui.biomaterial.BiomaterialConstants | ||
---|---|---|
public static final java.lang.String |
LIST_MATERIAL_TYPES |
"listMaterialTypes" |
public static final java.lang.String |
LIST_TAXON_TYPES |
"listTaxonTypes" |
public static final java.lang.String |
LIST_TREATMENT_TYPES |
"listTreatmentTypes" |
public static final java.lang.String |
LIST_UNIT_TYPES |
"listUnitTypes" |
public static final java.lang.String |
STORED_BIOSOURCE |
"storedBiosource" |
public static final java.lang.String |
STORED_TREATMENT2_FORM |
"storedTreatment2Form" |
public static final java.lang.String |
TREATMENT_EVENTS |
"treatmentEvents" |
gov.nih.nci.caarray.ui.core.CustomMultipartRequestHandler | ||
---|---|---|
public static final long |
DEFAULT_SIZE_MAX |
262144000L |
public static final int |
DEFAULT_SIZE_THRESHOLD |
262144 |
gov.nih.nci.caarray.ui.ontology.OntologyConstants | ||
---|---|---|
public static final java.lang.String |
CELLLINE_JSP_PREFIX |
"cellLine" |
public static final java.lang.String |
CELLTYPE_JSP_PREFIX |
"cellType" |
public static final java.lang.String |
DEVELSTAGE_JSP_PREFIX |
"developmentalStage" |
public static final java.lang.String |
DISEASE_STAGE_JSP_PREFIX |
"diseaseStage" |
public static final java.lang.String |
DISEASE_STATE_JSP_PREFIX |
"diseaseState" |
public static final java.lang.String |
ONT_SEARCH_ACCNUM |
"ontSearchAccNumb" |
public static final java.lang.String |
ONT_SEARCH_DBNAME |
"ontSearchDbName" |
public static final java.lang.String |
ONT_SEARCH_ECOCULT |
"ontSearchEcoCult" |
public static final java.lang.String |
ONT_SEARCH_NAME |
"ontSearchName" |
public static final java.lang.String |
ONT_SEARCH_RESULTS |
"ontSearchResults" |
public static final java.lang.String |
ORGPART_JSP_PREFIX |
"organismPart" |
public static final java.lang.String |
STRAINORLINE_JSP_PREFIX |
"strainOrLine" |
public static final java.lang.String |
TUMORGRADING_JSP_PREFIX |
"tumorGrading" |
org.biomage.* |
---|
org.biomage.Array.ArrayGroup.OrientationMarkPosition | ||
---|---|---|
public final int |
bottom |
1 |
public final int |
left |
2 |
public final int |
right |
3 |
public final int |
top |
0 |
org.biomage.AuditAndSecurity.Audit.Action | ||
---|---|---|
public final int |
creation |
0 |
public final int |
modification |
1 |
org.biomage.BioAssayData.BioDataCube.Order | ||
---|---|---|
public final int |
BDQ |
0 |
public final int |
BQD |
1 |
public final int |
DBQ |
2 |
public final int |
DQB |
3 |
public final int |
QBD |
4 |
public final int |
QDB |
5 |
org.biomage.BioSequence.SeqFeature.Basis | ||
---|---|---|
public final int |
both |
2 |
public final int |
computational |
1 |
public final int |
experimental |
0 |
public final int |
NA |
4 |
public final int |
unknown |
3 |
org.biomage.Measurement.ConcentrationUnit.UnitNameCV | ||
---|---|---|
public final int |
fM |
5 |
public final int |
g_per_L |
8 |
public final int |
gram_percent |
9 |
public final int |
M |
0 |
public final int |
mg_per_mL |
6 |
public final int |
mL_per_L |
7 |
public final int |
mM |
1 |
public final int |
nM |
2 |
public final int |
other |
13 |
public final int |
percent_vol_per_vol |
10 |
public final int |
percent_weight_per_vol |
11 |
public final int |
percent_weight_per_weight |
12 |
public final int |
pM |
4 |
public final int |
uM |
3 |
org.biomage.Measurement.DistanceUnit.UnitNameCV | ||
---|---|---|
public final int |
A |
5 |
public final int |
cm |
3 |
public final int |
m |
4 |
public final int |
mm |
2 |
public final int |
nm |
0 |
public final int |
other |
6 |
public final int |
um |
1 |
org.biomage.Measurement.MassUnit.UnitNameCV | ||
---|---|---|
public final int |
fg |
6 |
public final int |
g |
1 |
public final int |
kg |
0 |
public final int |
mg |
2 |
public final int |
ng |
4 |
public final int |
other |
7 |
public final int |
pg |
5 |
public final int |
ug |
3 |
org.biomage.Measurement.Measurement.KindCV | ||
---|---|---|
public final int |
concentration |
6 |
public final int |
distance |
1 |
public final int |
mass |
4 |
public final int |
other |
7 |
public final int |
quantity |
3 |
public final int |
temperature |
2 |
public final int |
time |
0 |
public final int |
volume |
5 |
org.biomage.Measurement.Measurement.Type | ||
---|---|---|
public final int |
absolute |
0 |
public final int |
change |
1 |
org.biomage.Measurement.QuantityUnit.UnitNameCV | ||
---|---|---|
public final int |
amol |
1 |
public final int |
fmol |
2 |
public final int |
mol |
0 |
public final int |
molecules |
6 |
public final int |
nmol |
4 |
public final int |
other |
7 |
public final int |
pmol |
3 |
public final int |
umol |
5 |
org.biomage.Measurement.TemperatureUnit.UnitNameCV | ||
---|---|---|
public final int |
degrees_C |
0 |
public final int |
degrees_F |
1 |
public final int |
K |
2 |
org.biomage.Measurement.TimeUnit.UnitNameCV | ||
---|---|---|
public final int |
days |
3 |
public final int |
hours |
4 |
public final int |
minutes |
5 |
public final int |
months |
1 |
public final int |
ms |
8 |
public final int |
other |
9 |
public final int |
seconds |
6 |
public final int |
us |
7 |
public final int |
weeks |
2 |
public final int |
years |
0 |
org.biomage.Measurement.VolumeUnit.UnitNameCV | ||
---|---|---|
public final int |
cc |
1 |
public final int |
dl |
2 |
public final int |
fl |
7 |
public final int |
L |
3 |
public final int |
ml |
0 |
public final int |
nl |
5 |
public final int |
other |
8 |
public final int |
pl |
6 |
public final int |
ul |
4 |
org.biomage.tools.apps.annot.GuiSet | ||
---|---|---|
public static final int |
B |
1 |
public static final int |
C |
10 |
public static final int |
E |
13 |
public static final int |
H |
2 |
public static final int |
N |
11 |
public static final int |
NE |
12 |
public static final int |
NONE |
0 |
public static final int |
NW |
18 |
public static final int |
RELATIVE |
-1 |
public static final int |
REMAINDER |
0 |
public static final int |
S |
15 |
public static final int |
SE |
14 |
public static final int |
SW |
16 |
public static final int |
V |
3 |
public static final int |
W |
17 |
org.biomage.tools.apps.annot.MageXMLConverter | ||
---|---|---|
public static final int |
PAGE_X |
450 |
public static final int |
PAGE_Y |
500 |
org.biomage.tools.apps.annot.PagePanel | ||
---|---|---|
public static final int |
LED_SIZE |
20 |
public static final java.lang.String |
NO_SPACE |
"No space is allowed at beginning." |
public static final java.lang.String |
REQUIRED |
"This is a required field." |
public static final int |
TEXT_WIDTH |
10 |
org.biomage.tools.generate_classes.CreateFile | ||
---|---|---|
public static final int |
JAVA_INTERFACE |
3 |
public static final int |
UML_CLASS |
2 |
public static final int |
UML_MODEL |
0 |
public static final int |
UML_PACKAGE |
1 |
org.biomage.tools.generate_classes.CreateMageClasses | ||
---|---|---|
protected static final java.lang.String |
DEFAULT_PATH |
"org.biomage" |
org.biomage.tools.generate_classes.CreateMageDTDClasses | ||
---|---|---|
protected static final java.lang.String |
DEFAULT_PATH |
"org.biomage" |
org.biomage.tools.generate_classes.XMIParseHelpers | ||
---|---|---|
public static final int |
AGGREGATE |
1 |
public static final int |
COMPOSITE |
2 |
public static final int |
NOT_AGGR |
0 |
public static final java.lang.String |
tobeIdentifiable |
"Identifiable" |
org.biomage.tools.generate_er.CreateMageER | ||
---|---|---|
public static final java.lang.String |
ABSTRACT |
"true" |
public static final java.lang.String |
aLine |
"--------------------" |
public static final java.lang.String |
DATA |
"&data_table;" |
public static final java.lang.String |
FALSE |
"false" |
public static final java.lang.String |
FIRSTLINE |
"<?xml version=\"1.0\" standalone=\"no\"?>\n" |
public static final java.lang.String |
FOREIGNKEY |
"_fk" |
public static final java.lang.String |
HALF_INDENT |
" " |
public static final java.lang.String |
ID |
"ID" |
public static final java.lang.String |
INDENT |
" " |
public static final java.lang.String |
INTEGER |
"int" |
public static final java.lang.String |
LINKING |
"&linking_table;" |
public static final java.lang.String |
LINKING_FKEY |
"&fkey_mtm;" |
public static final java.lang.String |
LOOKUP_FKEY |
"&fkey_lookup;" |
public static final java.lang.String |
NO_BASE_CLASS |
"none" |
public static final java.lang.String |
NOT_ABSTRACT |
"false" |
public static final java.lang.String |
NOT_NULL |
"true" |
public static final java.lang.String |
NULL |
"false" |
public static final java.lang.String |
ONE_TO_MANY |
"&fkey_otm;" |
public static final java.lang.String |
ONE_TO_ONE |
"&fkey_oto;" |
public static final java.lang.String |
PRIMARY_KEY |
"Primary Key" |
public static final java.lang.String |
SECONDLINE |
"<!DOCTYPE table SYSTEM \"table.dtd\">\n" |
public static final java.lang.String |
SERIAL |
"Serial" |
public static final java.lang.String |
SUBSET |
"&subset_table;" |
public static final java.lang.String |
TRUE |
"true" |
public static final java.lang.String |
VALIDATION |
"&validation_table;" |
public static final java.lang.String |
VIEW |
"&view;" |
org.biomage.tools.helpers.OntologyHelper | ||
---|---|---|
protected static final java.lang.String |
PARSER_NAME |
"org.apache.xerces.parsers.SAXParser" |
|
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