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ArrayDesign
to the persistence store
ArrayDesign
to the persistence store
ArrayGroup
to the persistence store.
ArrayGroup
that has one Array
that
has the specified arrayName
as its name and references to the
specified ArrayDesign
.
ArrayGroup
to the persistence store
Biosample
to the persistence store
BioSource
to the persistence store
CompositeGroup
to the specified
ArrayDesign
.
Experiment
to the persistence store
FeatureGroup
to the specified
ArrayDesign
.
Hardware
to the specified
Protocol
.
HybridizationFileUpload
to the persistence store.
Describable
object.
OntologyEntry
and one or more protocol types represented
by OntologyEntry
's.
Parameter
to the specified
Protocol
.
Protocol
to the persistence store
Protocol
to the persistence store.
ReporterGroup
to the specified
ArrayDesign
.
Software
to the specified
Protocol
.
PhysicalArrayDesign
from an Affymetrix .CDF
file.SecuredElementData
with
PROTECTION_GROUP_PRIVATE
as a default group.
SecuredElementData
with
PROTECTION_GROUP_PRIVATE
as a default group.
Principal
interface
and represents a Sample user.Query
.
Query
.
ProtocolApplication
are using the specified
Protocol
.
fileNames
to it.
FormFile
interface by
wrapping the Commons FileUpload FileItem
interface.HybridizationFileUploadEntry
to the caArray database
instance.Parameter
from the specified
Protocol
and delete it from the persistence store.
Protocol
from the persistence store.
ArrayGroup
.
disableConstraintsAndIndexes
.
disableConstraintsAndIndexes
.
DesignProviderRole
with the specified one if they're
equal.
Extendable
is the same reference as the
specified object or it has the same ID.
ExperimentProviderRole
with the specified one if
they're equal.
Class
type exists.
HybridizationFileUploadEntries
.ActionProtocolTypeMapData
's.
ActionProtocolTypeMap
's.
AdditionalDataProcessingData
object from the persistence store.
AdditionalDataProcessingData
object from the persistence store.
AdditionalDataProcessingData
object from the persistence store.
AdditionalDataProcessingData
object from the persistence store.
Array
that has the specified
ID by delegating the call to the same method in ArrayManagerDB
.
PhysicalArrayDesign
that has the specified
ID by delegating the call to the same method in ArrayDesignManagerDB
.
ArrayDesign
that match the specified
Criteria
and that the array design is NOT marked as deleted.
Array
that match the specified
Criteria
and that the array is NOT marked as deleted.
ArrayGroup
whose array is associated with the
specified ArrayDesign
.
BioSampleData
object from the persistence store.
BioSampleData
object from the persistence store.
BioSourceData
object from the persistence store.
BioSourceView
object from the persistence store.
insertIfNotFound
is true.
BioSource
's
that are used to produce the specified product BioSample
or
LabeledExtract
.
CompositeGroup
that has the specified ID.
Experiment
object from the persistence store.
Experiment
object from the persistence store.
FeatureGroup
that has the specified ID.
Hardware
that has the specified ID.
Hardware
that has the specified ID.
Organization
's that are currently associated
with one or more hardware as manufacturers.
LabeledExtractView
object from the persistence store.
CaArrayPrincipal
.
Iterator
that
materializes the object that meet the specification of the specified
query each time the next()
method is invoked.
OntologyEntry
s the element
whose category matches the specified category.
Protocol
that has the specified ID by
delegating the call to the same method in ProtocolManagerDB
.
Protocol
that has the specified ID.
Protocol
that match the specified ID.
ProtocolApplication
that use the specified
Protocol
.
Protocol
's that match the specified
criteria.
quantitationTypeColumn2SimpleQuantitationTypeMappings
.
ReporterGroup
that has the specified ID.
List
of LocalDynaBean
's
each of which represents a data row.
Software
that has the specified ID.
Software
that has the specified ID.
TreatmentData
object from the persistence store.
keyProperty
attribute.
long
attribute and represents
the target field value's identifying information is a zero.LoginModule
.
batchSize
of Identifiables
with a transaction.
LdapAuthenticationDAObj
object.
ObjectCacheEHCachePerClassImpl
ProtocolApplication
with
the source ProtocolApplicationData
since the conversion is
only intended for adding a new ProtocolApplication
.
LdapAuthenticationDAObj
object.
RdbmsAuthorizationDAObj
object.
CompositeGroup
from the specified
ArrayDesign
.
FeatureGroup
from the specified
ArrayDesign
.
Hardware
from the specified
Protocol
.
ReporterGroup
from the specified
ArrayDesign
.
Software
from the specified
Protocol
.
Role object.
HybridizationFileUploadEntry
without saving
(linking only) any associated MAGE objects.
CAFileUploadEntry
without saving
(linking only) any associated MAGE objects.
ArrayDesign
's that match the specifed
ArrayDesignSearchCriteria
.
Protocol
's that match the specifed
ProtocolSearchCriteria
.
SecurityAdminService object.
SecurityObjFactory object.
SecurityServiceObj object.
Role
object
Role
object
Role
object
Role
object
Describable
object.
UnitData
with the appropriate
controlled vocabularies from the persistence store that represent
its unit type and unit name.
ProtocolSearchCriteria
to an OJB Criteria
HardwareSearchCriteria
to an OJB Criteria
SoftwareSearchCriteria
to an OJB Criteria
ArrayDesignSearchCriteria
to an OJB Criteria
ExperimentSearchCriteria
to an OJB Criteria
BioMaterialSearchCriteria
to an OJB Criteria
ArraySearchCriteria
to an OJB Criteria
MAGEMLFileUploadSearchCriteria
to an OJB
Criteria
MAGEMLFileUploadSearchCriteria
to an OJB
Criteria
CaArrayPrincipal
.
strUnitNameCV
to the appropriate UnitNameCV
based on the object type
of the specified Unit
subclass.
BioMaterial
with the specified
characteristics.
BioMaterial
.
Protocol
.
org.apache.commons.fileupload.FileItem
of
the Apache Commons FileUpload framework.
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