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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Array.ZoneDefect
public class ZoneDefect
Stores the defect information for a zone.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected OntologyEntry |
defectType
Indicates the type of defect (e.g. |
protected PositionDelta |
positionDelta
How the zone deviates in position from the ArrayDesign. |
protected Zone |
zone
Reference to the Zone that was misprinted. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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ZoneDefect()
Default constructor. |
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ZoneDefect(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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boolean |
emptyMAGEobject()
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OntologyEntry |
getDefectType()
Get method for defectType |
java.lang.String |
getModelClassName()
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PositionDelta |
getPositionDelta()
Get method for positionDelta |
Zone |
getZone()
Get method for zone |
void |
setDefectType(OntologyEntry defectType)
Set method for defectType |
void |
setPositionDelta(PositionDelta positionDelta)
Set method for positionDelta |
void |
setZone(Zone zone)
Set method for zone |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected OntologyEntry defectType
protected PositionDelta positionDelta
protected Zone zone
Constructor Detail |
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public ZoneDefect()
public ZoneDefect(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setDefectType(OntologyEntry defectType)
setDefectType
in interface HasDefectType
value
- to setpublic OntologyEntry getDefectType()
getDefectType
in interface HasDefectType
public void setPositionDelta(PositionDelta positionDelta)
setPositionDelta
in interface HasPositionDelta
value
- to setpublic PositionDelta getPositionDelta()
getPositionDelta
in interface HasPositionDelta
public void setZone(Zone zone)
setZone
in interface HasZone
value
- to setpublic Zone getZone()
getZone
in interface HasZone
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