org.biomage.ArrayDesign
Class ZoneLayout

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.ArrayDesign.ZoneLayout
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasDistanceUnit, HasPropertySets

public class ZoneLayout
extends Extendable
implements java.io.Serializable, HasDistanceUnit

Specifies the layout of features in a rectangular grid.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
protected  DistanceUnit distanceUnit
          Unit of the ZoneLayout attributes.
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
ZoneLayout()
          Default constructor.
ZoneLayout(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 boolean emptyMAGEobject()
           
 DistanceUnit getDistanceUnit()
          Get method for distanceUnit
 java.lang.String getModelClassName()
           
 java.lang.Integer getNumFeaturesPerCol()
          Get method for numFeaturesPerCol
 java.lang.Integer getNumFeaturesPerRow()
          Get method for numFeaturesPerRow
 java.lang.Float getSpacingBetweenCols()
          Get method for spacingBetweenCols
 java.lang.Float getSpacingBetweenRows()
          Get method for spacingBetweenRows
 void setDistanceUnit(DistanceUnit distanceUnit)
          Set method for distanceUnit
 void setNumFeaturesPerCol(java.lang.Integer numFeaturesPerCol)
          Set method for numFeaturesPerCol
 void setNumFeaturesPerRow(java.lang.Integer numFeaturesPerRow)
          Set method for numFeaturesPerRow
 void setSpacingBetweenCols(java.lang.Float spacingBetweenCols)
          Set method for spacingBetweenCols
 void setSpacingBetweenRows(java.lang.Float spacingBetweenRows)
          Set method for spacingBetweenRows
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

distanceUnit

protected DistanceUnit distanceUnit
Unit of the ZoneLayout attributes.

Constructor Detail

ZoneLayout

public ZoneLayout()
Default constructor.


ZoneLayout

public ZoneLayout(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class Extendable
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class Extendable
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class Extendable
Throws:
java.io.IOException

setNumFeaturesPerRow

public void setNumFeaturesPerRow(java.lang.Integer numFeaturesPerRow)
Set method for numFeaturesPerRow

Parameters:
value - to set

getNumFeaturesPerRow

public java.lang.Integer getNumFeaturesPerRow()
Get method for numFeaturesPerRow

Returns:
value of the attribute

setNumFeaturesPerCol

public void setNumFeaturesPerCol(java.lang.Integer numFeaturesPerCol)
Set method for numFeaturesPerCol

Parameters:
value - to set

getNumFeaturesPerCol

public java.lang.Integer getNumFeaturesPerCol()
Get method for numFeaturesPerCol

Returns:
value of the attribute

setSpacingBetweenRows

public void setSpacingBetweenRows(java.lang.Float spacingBetweenRows)
Set method for spacingBetweenRows

Parameters:
value - to set

getSpacingBetweenRows

public java.lang.Float getSpacingBetweenRows()
Get method for spacingBetweenRows

Returns:
value of the attribute

setSpacingBetweenCols

public void setSpacingBetweenCols(java.lang.Float spacingBetweenCols)
Set method for spacingBetweenCols

Parameters:
value - to set

getSpacingBetweenCols

public java.lang.Float getSpacingBetweenCols()
Get method for spacingBetweenCols

Returns:
value of the attribute

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class Extendable

setDistanceUnit

public void setDistanceUnit(DistanceUnit distanceUnit)
Set method for distanceUnit

Specified by:
setDistanceUnit in interface HasDistanceUnit
Parameters:
value - to set

getDistanceUnit

public DistanceUnit getDistanceUnit()
Get method for distanceUnit

Specified by:
getDistanceUnit in interface HasDistanceUnit
Returns:
value of the attribute