org.biomage.ArrayDesign
Class ReporterGroup

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.Common.Describable
          extended by org.biomage.Common.Identifiable
              extended by org.biomage.ArrayDesign.DesignElementGroup
                  extended by org.biomage.ArrayDesign.ReporterGroup
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasAuditTrail, HasDescriptions, HasPropertySets, HasReporters, HasSecurity, HasSpecies, HasTypes

public class ReporterGroup
extends DesignElementGroup
implements java.io.Serializable, HasReporters

Allows specification of the type of Reporter Design Element.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasReporters
HasReporters.Reporters_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasTypes
HasTypes.Types_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail
HasAuditTrail.AuditTrail_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions
HasDescriptions.Descriptions_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
protected  java.util.List reporters
          The reporters that belong to this group.
 
Fields inherited from class org.biomage.ArrayDesign.DesignElementGroup
ojbConcreteClass, species, types
 
Fields inherited from class org.biomage.Common.Describable
security
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
ReporterGroup()
          Default constructor.
ReporterGroup(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 void addToReporters(int position, Reporter reporter)
          Method to add Reporter at position to Reporters_list
 void addToReporters(Reporter reporter)
          Method to add Reporter to Reporters_list
 boolean emptyMAGEobject()
           
 Reporter getFromReporters(int position)
          Method to get Reporter from Reporters_list
 java.lang.String getModelClassName()
           
 HasReporters.Reporters_list getReporters()
          Get method for reporters
 void removeElementAtFromReporters(int position)
          Method to remove by position from Reporters_list
 void removeFromReporters(Reporter reporter)
          Method to remove first Reporter from Reporters_list
 void setAttributes(org.xml.sax.Attributes atts)
           
 void setReporters(HasReporters.Reporters_list reporters)
          Set method for reporters
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.ArrayDesign.DesignElementGroup
addToTypes, addToTypes, getFromTypes, getSpecies, getTypes, removeElementAtFromTypes, removeFromTypes, setSpecies, setTypes
 
Methods inherited from class org.biomage.Common.Identifiable
getIdentifier, getName, setIdentifier, setName, toString
 
Methods inherited from class org.biomage.Common.Describable
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

reporters

protected java.util.List reporters
The reporters that belong to this group.

Constructor Detail

ReporterGroup

public ReporterGroup()
Default constructor.


ReporterGroup

public ReporterGroup(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

setAttributes

public void setAttributes(org.xml.sax.Attributes atts)
Overrides:
setAttributes in class DesignElementGroup

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class DesignElementGroup
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class DesignElementGroup
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class DesignElementGroup
Throws:
java.io.IOException

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class DesignElementGroup

setReporters

public void setReporters(HasReporters.Reporters_list reporters)
Set method for reporters

Specified by:
setReporters in interface HasReporters
Parameters:
value - to set

getReporters

public HasReporters.Reporters_list getReporters()
Get method for reporters

Specified by:
getReporters in interface HasReporters
Returns:
value of the attribute

addToReporters

public void addToReporters(Reporter reporter)
Method to add Reporter to Reporters_list

Specified by:
addToReporters in interface HasReporters

addToReporters

public void addToReporters(int position,
                           Reporter reporter)
Method to add Reporter at position to Reporters_list

Specified by:
addToReporters in interface HasReporters

getFromReporters

public Reporter getFromReporters(int position)
Method to get Reporter from Reporters_list

Specified by:
getFromReporters in interface HasReporters

removeElementAtFromReporters

public void removeElementAtFromReporters(int position)
Method to remove by position from Reporters_list

Specified by:
removeElementAtFromReporters in interface HasReporters

removeFromReporters

public void removeFromReporters(Reporter reporter)
Method to remove first Reporter from Reporters_list

Specified by:
removeFromReporters in interface HasReporters