org.biomage.BioAssayData
Class QuantitationTypeDimension

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.Common.Describable
          extended by org.biomage.Common.Identifiable
              extended by org.biomage.BioAssayData.QuantitationTypeDimension
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasAuditTrail, HasDescriptions, HasPropertySets, HasQuantitationTypes, HasSecurity

public class QuantitationTypeDimension
extends Identifiable
implements java.io.Serializable, HasQuantitationTypes

An ordered list of quantitationTypes.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasQuantitationTypes
HasQuantitationTypes.QuantitationTypes_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail
HasAuditTrail.AuditTrail_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions
HasDescriptions.Descriptions_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
protected  java.util.List quantitationTypes
          The QuantitationTypes for this Dimension.
 
Fields inherited from class org.biomage.Common.Describable
security
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
QuantitationTypeDimension()
          Default constructor.
QuantitationTypeDimension(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 void addToQuantitationTypes(int position, QuantitationType quantitationType)
          Method to add QuantitationType at position to QuantitationTypes_list
 void addToQuantitationTypes(QuantitationType quantitationType)
          Method to add QuantitationType to QuantitationTypes_list
 boolean emptyMAGEobject()
           
 QuantitationType getFromQuantitationTypes(int position)
          Method to get QuantitationType from QuantitationTypes_list
 java.lang.String getModelClassName()
           
 HasQuantitationTypes.QuantitationTypes_list getQuantitationTypes()
          Get method for quantitationTypes
 void removeElementAtFromQuantitationTypes(int position)
          Method to remove by position from QuantitationTypes_list
 void removeFromQuantitationTypes(QuantitationType quantitationType)
          Method to remove first QuantitationType from QuantitationTypes_list
 void setAttributes(org.xml.sax.Attributes atts)
           
 void setQuantitationTypes(HasQuantitationTypes.QuantitationTypes_list quantitationTypes)
          Set method for quantitationTypes
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.Common.Identifiable
getIdentifier, getName, setIdentifier, setName, toString
 
Methods inherited from class org.biomage.Common.Describable
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

quantitationTypes

protected java.util.List quantitationTypes
The QuantitationTypes for this Dimension.

Constructor Detail

QuantitationTypeDimension

public QuantitationTypeDimension()
Default constructor.


QuantitationTypeDimension

public QuantitationTypeDimension(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

setAttributes

public void setAttributes(org.xml.sax.Attributes atts)
Overrides:
setAttributes in class Identifiable

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class Identifiable
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class Identifiable
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class Identifiable
Throws:
java.io.IOException

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class Identifiable

setQuantitationTypes

public void setQuantitationTypes(HasQuantitationTypes.QuantitationTypes_list quantitationTypes)
Set method for quantitationTypes

Specified by:
setQuantitationTypes in interface HasQuantitationTypes
Parameters:
value - to set

getQuantitationTypes

public HasQuantitationTypes.QuantitationTypes_list getQuantitationTypes()
Get method for quantitationTypes

Specified by:
getQuantitationTypes in interface HasQuantitationTypes
Returns:
value of the attribute

addToQuantitationTypes

public void addToQuantitationTypes(QuantitationType quantitationType)
Method to add QuantitationType to QuantitationTypes_list

Specified by:
addToQuantitationTypes in interface HasQuantitationTypes

addToQuantitationTypes

public void addToQuantitationTypes(int position,
                                   QuantitationType quantitationType)
Method to add QuantitationType at position to QuantitationTypes_list

Specified by:
addToQuantitationTypes in interface HasQuantitationTypes

getFromQuantitationTypes

public QuantitationType getFromQuantitationTypes(int position)
Method to get QuantitationType from QuantitationTypes_list

Specified by:
getFromQuantitationTypes in interface HasQuantitationTypes

removeElementAtFromQuantitationTypes

public void removeElementAtFromQuantitationTypes(int position)
Method to remove by position from QuantitationTypes_list

Specified by:
removeElementAtFromQuantitationTypes in interface HasQuantitationTypes

removeFromQuantitationTypes

public void removeFromQuantitationTypes(QuantitationType quantitationType)
Method to remove first QuantitationType from QuantitationTypes_list

Specified by:
removeFromQuantitationTypes in interface HasQuantitationTypes