|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.BioAssayData.BioAssayDimension
public class BioAssayDimension
An ordered list of bioAssays.
Nested Class Summary |
---|
Nested classes/interfaces inherited from interface org.biomage.Interface.HasBioAssays |
---|
HasBioAssays.BioAssays_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
---|
HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
---|
HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
---|
HasPropertySets.PropertySets_list |
Field Summary | |
---|---|
protected java.util.List |
bioAssays
The BioAssays for this Dimension |
Fields inherited from class org.biomage.Common.Describable |
---|
security |
Fields inherited from class org.biomage.Common.Extendable |
---|
editable, id, securedElementId |
Constructor Summary | |
---|---|
BioAssayDimension()
Default constructor. |
|
BioAssayDimension(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
---|---|
void |
addToBioAssays(BioAssay bioAssay)
Method to add BioAssay to BioAssays_list |
void |
addToBioAssays(int position,
BioAssay bioAssay)
Method to add BioAssay at position to BioAssays_list |
boolean |
emptyMAGEobject()
|
HasBioAssays.BioAssays_list |
getBioAssays()
Get method for bioAssays |
BioAssay |
getFromBioAssays(int position)
Method to get BioAssay from BioAssays_list |
java.lang.String |
getModelClassName()
|
void |
removeElementAtFromBioAssays(int position)
Method to remove by position from BioAssays_list |
void |
removeFromBioAssays(BioAssay bioAssay)
Method to remove first BioAssay from BioAssays_list |
void |
setAttributes(org.xml.sax.Attributes atts)
|
void |
setBioAssays(HasBioAssays.BioAssays_list bioAssays)
Set method for bioAssays |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Identifiable |
---|
getIdentifier, getName, setIdentifier, setName, toString |
Methods inherited from class org.biomage.Common.Describable |
---|
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
---|
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
---|
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
---|
protected java.util.List bioAssays
Constructor Detail |
---|
public BioAssayDimension()
public BioAssayDimension(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
---|
public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class Identifiable
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Identifiable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Identifiable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Identifiable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Identifiable
public void setBioAssays(HasBioAssays.BioAssays_list bioAssays)
setBioAssays
in interface HasBioAssays
value
- to setpublic HasBioAssays.BioAssays_list getBioAssays()
getBioAssays
in interface HasBioAssays
public void addToBioAssays(BioAssay bioAssay)
addToBioAssays
in interface HasBioAssays
public void addToBioAssays(int position, BioAssay bioAssay)
addToBioAssays
in interface HasBioAssays
public BioAssay getFromBioAssays(int position)
getFromBioAssays
in interface HasBioAssays
public void removeElementAtFromBioAssays(int position)
removeElementAtFromBioAssays
in interface HasBioAssays
public void removeFromBioAssays(BioAssay bioAssay)
removeFromBioAssays
in interface HasBioAssays
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |