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java.lang.Objectgov.nih.nci.caarray.services.util.netcdf.NETCDFCreator
public final class NETCDFCreator
Creates netcdf files for the application. Initialized by the design elements quantitation types and bioassays to be used. Generally only create one netcdf file per bioassay
Constructor Summary | |
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NETCDFCreator(DesignElement[] designElementDimension,
QuantitationType[] quantitationTypeDimension,
BioAssay[] bioAssayDimension)
Constructs the class with the neccessary items as arrays |
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NETCDFCreator(java.util.List designElementDimension,
java.util.List quantitationTypeDimension,
java.util.List bioAssayDimension)
Constructs the class with the neccessary items as lists |
Method Summary | |
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void |
setCube(java.lang.Object[][][] theCube,
java.lang.String order)
The cube has our expression data, the order tells us the dimensions |
void |
writeNETcdfFile(java.lang.String directory)
Writes the bioassays in the cube out to a netcdf file(s) |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public NETCDFCreator(DesignElement[] designElementDimension, QuantitationType[] quantitationTypeDimension, BioAssay[] bioAssayDimension) throws NETCDFException
designElementDimension
- quantitationTypeDimension
- bioAssayDimension
-
NETCDFException
public NETCDFCreator(java.util.List designElementDimension, java.util.List quantitationTypeDimension, java.util.List bioAssayDimension) throws NETCDFException
designElementDimension
- quantitationTypeDimension
- bioAssayDimension
-
NETCDFException
Method Detail |
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public void setCube(java.lang.Object[][][] theCube, java.lang.String order) throws NETCDFException
theCube
- order
-
NETCDFException
public void writeNETcdfFile(java.lang.String directory) throws NETCDFException
directory
- the directory to write out the file
NETCDFException
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