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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.BioAssayData.QuantitationTypeMapping
public class QuantitationTypeMapping
Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasQuantitationTypeMaps |
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HasQuantitationTypeMaps.QuantitationTypeMaps_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected java.util.List |
quantitationTypeMaps
The maps for the QuantitationTypes. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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QuantitationTypeMapping()
Default constructor. |
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QuantitationTypeMapping(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToQuantitationTypeMaps(int position,
QuantitationTypeMap quantitationTypeMap)
Method to add QuantitationTypeMap at position to QuantitationTypeMaps_list |
void |
addToQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)
Method to add QuantitationTypeMap to QuantitationTypeMaps_list |
boolean |
emptyMAGEobject()
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QuantitationTypeMap |
getFromQuantitationTypeMaps(int position)
Method to get QuantitationTypeMap from QuantitationTypeMaps_list |
java.lang.String |
getModelClassName()
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HasQuantitationTypeMaps.QuantitationTypeMaps_list |
getQuantitationTypeMaps()
Get method for quantitationTypeMaps |
void |
removeElementAtFromQuantitationTypeMaps(int position)
Method to remove by position from QuantitationTypeMaps_list |
void |
removeFromQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)
Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list |
void |
setQuantitationTypeMaps(HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps)
Set method for quantitationTypeMaps |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.util.List quantitationTypeMaps
Constructor Detail |
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public QuantitationTypeMapping()
public QuantitationTypeMapping(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setQuantitationTypeMaps(HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps)
setQuantitationTypeMaps
in interface HasQuantitationTypeMaps
value
- to setpublic HasQuantitationTypeMaps.QuantitationTypeMaps_list getQuantitationTypeMaps()
getQuantitationTypeMaps
in interface HasQuantitationTypeMaps
public void addToQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)
addToQuantitationTypeMaps
in interface HasQuantitationTypeMaps
public void addToQuantitationTypeMaps(int position, QuantitationTypeMap quantitationTypeMap)
addToQuantitationTypeMaps
in interface HasQuantitationTypeMaps
public QuantitationTypeMap getFromQuantitationTypeMaps(int position)
getFromQuantitationTypeMaps
in interface HasQuantitationTypeMaps
public void removeElementAtFromQuantitationTypeMaps(int position)
removeElementAtFromQuantitationTypeMaps
in interface HasQuantitationTypeMaps
public void removeFromQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)
removeFromQuantitationTypeMaps
in interface HasQuantitationTypeMaps
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