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Uses of QuantitationType in gov.nih.nci.caarray.services.fileparse |
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Methods in gov.nih.nci.caarray.services.fileparse that return QuantitationType | |
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static QuantitationType[] |
CaArrayToMageConversion.getMageTypesForParsingTypes(ParsingQuantitationType[] inArray)
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Methods in gov.nih.nci.caarray.services.fileparse with parameters of type QuantitationType | |
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void |
FileParseManagerDB.createBioAssayData(java.lang.Long bioAssayId,
java.lang.Long experimentId,
DesignElement[] designElements,
QuantitationType[] mageTypes,
java.lang.Long arrayDesignId)
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Uses of QuantitationType in gov.nih.nci.caarray.services.fileparse2 |
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Methods in gov.nih.nci.caarray.services.fileparse2 with parameters of type QuantitationType | |
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void |
HybridizationManagerDB.createBioAssayData(long bioAssayId,
long experimentId,
long arrayDesignId,
DesignElement[] designElements,
QuantitationType[] quantitationTypes)
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Uses of QuantitationType in gov.nih.nci.caarray.services.util.netcdf |
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Methods in gov.nih.nci.caarray.services.util.netcdf that return QuantitationType | |
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QuantitationType[] |
NETCDFFileReader.getQuantitations(BioAssay assay)
Gets an entire quantitation type for an assay |
Methods in gov.nih.nci.caarray.services.util.netcdf with parameters of type QuantitationType | |
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java.lang.Object |
NETCDFFileReader.getBioAssayDatum(BioAssay assay,
QuantitationType quantitationType,
DesignElement designElement)
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java.lang.Object[] |
NETCDFFileReader.getQuantitationArray(BioAssay assay,
QuantitationType quantitationType)
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static java.lang.Object[] |
NonNumericQuantitationTypesService.translateQuantitationTypes(java.lang.Object[] inputObjects,
QuantitationType type)
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static java.lang.Object |
NonNumericQuantitationTypesService.translateQuantitationTypes(java.lang.Object inputObject,
QuantitationType type)
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Constructors in gov.nih.nci.caarray.services.util.netcdf with parameters of type QuantitationType | |
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NETCDFCreator(DesignElement[] designElementDimension,
QuantitationType[] quantitationTypeDimension,
BioAssay[] bioAssayDimension)
Constructs the class with the neccessary items as arrays |
Uses of QuantitationType in org.biomage.BioAssayData |
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Fields in org.biomage.BioAssayData declared as QuantitationType | |
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protected QuantitationType |
QuantitationTypeTuple.quantitationType
The QuantitationType associated with the value of the BioAssayDatum. |
protected QuantitationType |
QuantitationTypeMap.targetQuantitationType
The QuantitationType whose value will be produced from the values of the source QuantitationType according to the Protocol. |
Methods in org.biomage.BioAssayData that return QuantitationType | |
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QuantitationType |
QuantitationTypeDimension.getFromQuantitationTypes(int position)
Method to get QuantitationType from QuantitationTypes_list |
QuantitationType |
QuantitationTypeMap.getFromSourcesQuantitationType(int position)
Method to get QuantitationType from SourcesQuantitationType_list |
QuantitationType |
QuantitationTypeTuple.getQuantitationType()
Get method for quantitationType |
QuantitationType |
QuantitationTypeMap.getTargetQuantitationType()
Get method for targetQuantitationType |
Methods in org.biomage.BioAssayData with parameters of type QuantitationType | |
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void |
QuantitationTypeDimension.addToQuantitationTypes(int position,
QuantitationType quantitationType)
Method to add QuantitationType at position to QuantitationTypes_list |
void |
QuantitationTypeDimension.addToQuantitationTypes(QuantitationType quantitationType)
Method to add QuantitationType to QuantitationTypes_list |
void |
QuantitationTypeMap.addToSourcesQuantitationType(int position,
QuantitationType quantitationType)
Method to add QuantitationType at position to SourcesQuantitationType_list |
void |
QuantitationTypeMap.addToSourcesQuantitationType(QuantitationType quantitationType)
Method to add QuantitationType to SourcesQuantitationType_list |
void |
QuantitationTypeDimension.removeFromQuantitationTypes(QuantitationType quantitationType)
Method to remove first QuantitationType from QuantitationTypes_list |
void |
QuantitationTypeMap.removeFromSourcesQuantitationType(QuantitationType quantitationType)
Method to remove first QuantitationType from SourcesQuantitationType_list |
void |
QuantitationTypeTuple.setQuantitationType(QuantitationType quantitationType)
Set method for quantitationType |
void |
QuantitationTypeMap.setTargetQuantitationType(QuantitationType targetQuantitationType)
Set method for targetQuantitationType |
Uses of QuantitationType in org.biomage.Interface |
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Methods in org.biomage.Interface that return QuantitationType | |
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QuantitationType |
HasQuantitationTypes.getFromQuantitationTypes(int position)
Method to get QuantitationType from QuantitationTypes_list |
QuantitationType |
HasSourcesQuantitationType.getFromSourcesQuantitationType(int position)
Method to get QuantitationType from SourcesQuantitationType_list |
QuantitationType |
HasQuantitationType.getQuantitationType()
Get method for quantitationType |
QuantitationType |
HasTargetQuantitationType.getTargetQuantitationType()
Get method for targetQuantitationType |
Methods in org.biomage.Interface with parameters of type QuantitationType | |
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void |
HasQuantitationTypes.addToQuantitationTypes(int position,
QuantitationType quantitationType)
Method to add QuantitationType at position to QuantitationTypes_list |
void |
HasQuantitationTypes.addToQuantitationTypes(QuantitationType quantitationType)
Method to add QuantitationType to QuantitationTypes_list |
void |
HasSourcesQuantitationType.addToSourcesQuantitationType(int position,
QuantitationType quantitationType)
Method to add QuantitationType at position to SourcesQuantitationType_list |
void |
HasSourcesQuantitationType.addToSourcesQuantitationType(QuantitationType quantitationType)
Method to add QuantitationType to SourcesQuantitationType_list |
void |
HasQuantitationTypes.removeFromQuantitationTypes(QuantitationType quantitationType)
Method to remove first QuantitationType from QuantitationTypes_list |
void |
HasSourcesQuantitationType.removeFromSourcesQuantitationType(QuantitationType quantitationType)
Method to remove first QuantitationType from SourcesQuantitationType_list |
void |
HasQuantitationType.setQuantitationType(QuantitationType quantitationType)
Set method for quantitationType |
void |
HasTargetQuantitationType.setTargetQuantitationType(QuantitationType targetQuantitationType)
Set method for targetQuantitationType |
Uses of QuantitationType in org.biomage.QuantitationType |
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Subclasses of QuantitationType in org.biomage.QuantitationType | |
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class |
ConfidenceIndicator
Indication of some measure of confidence for a standard quantitation type. |
class |
DerivedSignal
A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements. |
class |
Error
Error measurement of a quantitation. |
class |
ExpectedValue
Indication of what value is expected of the associated standard quantitation type. |
class |
Failed
Values associated with this QuantitationType indicate a failure of some kind for a particular DesignElement for a BioAssay. |
class |
MeasuredSignal
Best measure from feature extraction as to the presence and intensity of the signal. |
class |
PresentAbsent
Indicates relative presence or absence. |
class |
PValue
Measurement of the accuracy of a quantitation. |
class |
Ratio
The ratio of two or more signals, typically between two channels. |
class |
SpecializedQuantitationType
User defined quantitation type. |
class |
StandardQuantitationType
Superclass for the named quantitation type. |
Fields in org.biomage.QuantitationType declared as QuantitationType | |
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protected QuantitationType |
ConfidenceIndicator.targetQuantitationType
The association between a ConfidenceIndicator and the QuantitationType its is an indicator for. |
Methods in org.biomage.QuantitationType that return QuantitationType | |
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QuantitationType |
QuantitationType_package.getFromQuantitationType_list(int position)
Method to get QuantitationType from QuantitationType_list |
QuantitationType |
ConfidenceIndicator.getTargetQuantitationType()
Get method for targetQuantitationType |
Methods in org.biomage.QuantitationType with parameters of type QuantitationType | |
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void |
QuantitationType_package.addToQuantitationType_list(int position,
QuantitationType quantitationType)
Method to add QuantitationType at position to QuantitationType_list |
void |
QuantitationType_package.addToQuantitationType_list(QuantitationType quantitationType)
Method to add QuantitationType to QuantitationType_list |
void |
QuantitationType_package.removeFromQuantitationType_list(QuantitationType quantitationType)
Method to remove first QuantitationType from QuantitationType_list |
void |
ConfidenceIndicator.setTargetQuantitationType(QuantitationType targetQuantitationType)
Set method for targetQuantitationType |
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