Uses of Class
org.biomage.DesignElement.CompositeSequence

Packages that use CompositeSequence
gov.nih.nci.caarray.services.arraydesign   
gov.nih.nci.caarray.services.arraydesign.loader   
org.biomage.ArrayDesign   
org.biomage.BioAssayData   
org.biomage.DesignElement   
org.biomage.Interface   
 

Uses of CompositeSequence in gov.nih.nci.caarray.services.arraydesign
 

Methods in gov.nih.nci.caarray.services.arraydesign with parameters of type CompositeSequence
 void DbArrayDesignDataSource.addCompositeSequence(CompositeGroup compositeGroup, CompositeSequence compositeSequence)
           
 void ArrayDesignManagerDB.addCompositeSequence(CompositeGroup compositeGroup, CompositeSequence compositeSequence)
           
 void ArrayDesignManager.addCompositeSequence(CompositeGroup compositeGroup, CompositeSequence compositeSequence)
          Adds a composite sequence to the given group.
 void ArrayDesignDataSource.addCompositeSequence(CompositeGroup compositeGroup, CompositeSequence compositeSequence)
           
 

Uses of CompositeSequence in gov.nih.nci.caarray.services.arraydesign.loader
 

Methods in gov.nih.nci.caarray.services.arraydesign.loader with parameters of type CompositeSequence
 void ArrayDesignSaver.saveCompositeSequence(CompositeSequence compositeSequence, CompositeGroup compositeGroup)
           
 

Uses of CompositeSequence in org.biomage.ArrayDesign
 

Methods in org.biomage.ArrayDesign that return CompositeSequence
 CompositeSequence CompositeGroup.getFromCompositeSequences(int position)
          Method to get CompositeSequence from CompositeSequences_list
 

Methods in org.biomage.ArrayDesign with parameters of type CompositeSequence
 void CompositeGroup.addToCompositeSequences(CompositeSequence compositeSequence)
          Method to add CompositeSequence to CompositeSequences_list
 void CompositeGroup.addToCompositeSequences(int position, CompositeSequence compositeSequence)
          Method to add CompositeSequence at position to CompositeSequences_list
 void CompositeGroup.removeFromCompositeSequences(CompositeSequence compositeSequence)
          Method to remove first CompositeSequence from CompositeSequences_list
 

Uses of CompositeSequence in org.biomage.BioAssayData
 

Methods in org.biomage.BioAssayData that return CompositeSequence
 CompositeSequence CompositeSequenceDimension.getFromCompositeSequences(int position)
          Method to get CompositeSequence from CompositeSequences_list
 

Methods in org.biomage.BioAssayData with parameters of type CompositeSequence
 void CompositeSequenceDimension.addToCompositeSequences(CompositeSequence compositeSequence)
          Method to add CompositeSequence to CompositeSequences_list
 void CompositeSequenceDimension.addToCompositeSequences(int position, CompositeSequence compositeSequence)
          Method to add CompositeSequence at position to CompositeSequences_list
 void CompositeSequenceDimension.removeFromCompositeSequences(CompositeSequence compositeSequence)
          Method to remove first CompositeSequence from CompositeSequences_list
 

Uses of CompositeSequence in org.biomage.DesignElement
 

Fields in org.biomage.DesignElement declared as CompositeSequence
protected  CompositeSequence CompositePosition.composite
          A source CompositeSequence that is part of a target CompositeSequence
protected  CompositeSequence ReporterCompositeMap.compositeSequence
          A map to the reporters that compose this CompositeSequence.
protected  CompositeSequence CompositeCompositeMap.compositeSequence
          A map to the compositeSequences that compose this CompositeSequence.
 

Methods in org.biomage.DesignElement that return CompositeSequence
 CompositeSequence CompositePosition.getComposite()
          Get method for composite
 CompositeSequence ReporterCompositeMap.getCompositeSequence()
          Get method for compositeSequence
 CompositeSequence CompositeCompositeMap.getCompositeSequence()
          Get method for compositeSequence
 CompositeSequence DesignElement_package.getFromCompositeSequence_list(int position)
          Method to get CompositeSequence from CompositeSequence_list
 

Methods in org.biomage.DesignElement with parameters of type CompositeSequence
 void DesignElement_package.addToCompositeSequence_list(CompositeSequence compositeSequence)
          Method to add CompositeSequence to CompositeSequence_list
 void DesignElement_package.addToCompositeSequence_list(int position, CompositeSequence compositeSequence)
          Method to add CompositeSequence at position to CompositeSequence_list
 void DesignElement_package.removeFromCompositeSequence_list(CompositeSequence compositeSequence)
          Method to remove first CompositeSequence from CompositeSequence_list
 void CompositePosition.setComposite(CompositeSequence composite)
          Set method for composite
 void ReporterCompositeMap.setCompositeSequence(CompositeSequence compositeSequence)
          Set method for compositeSequence
 void CompositeCompositeMap.setCompositeSequence(CompositeSequence compositeSequence)
          Set method for compositeSequence
 

Uses of CompositeSequence in org.biomage.Interface
 

Methods in org.biomage.Interface that return CompositeSequence
 CompositeSequence HasComposite.getComposite()
          Get method for composite
 CompositeSequence HasCompositeSequence.getCompositeSequence()
          Get method for compositeSequence
 CompositeSequence HasCompositeSequences.getFromCompositeSequences(int position)
          Method to get CompositeSequence from CompositeSequences_list
 

Methods in org.biomage.Interface with parameters of type CompositeSequence
 void HasCompositeSequences.addToCompositeSequences(CompositeSequence compositeSequence)
          Method to add CompositeSequence to CompositeSequences_list
 void HasCompositeSequences.addToCompositeSequences(int position, CompositeSequence compositeSequence)
          Method to add CompositeSequence at position to CompositeSequences_list
 void HasCompositeSequences.removeFromCompositeSequences(CompositeSequence compositeSequence)
          Method to remove first CompositeSequence from CompositeSequences_list
 void HasComposite.setComposite(CompositeSequence composite)
          Set method for composite
 void HasCompositeSequence.setCompositeSequence(CompositeSequence compositeSequence)
          Set method for compositeSequence