Uses of Class
gov.nih.nci.caarray.common.data.vocab.VocabData

Packages that use VocabData
gov.nih.nci.caarray.common.data.array   
gov.nih.nci.caarray.common.data.arraydesign   
gov.nih.nci.caarray.common.data.biomaterial   
gov.nih.nci.caarray.common.data.experiment   
gov.nih.nci.caarray.common.data.measurement   
gov.nih.nci.caarray.common.data.protocol   
gov.nih.nci.caarray.common.data.vocab   
gov.nih.nci.caarray.common.delegate   
gov.nih.nci.caarray.services.biomaterial   
gov.nih.nci.caarray.services.biomaterial.ejb   
gov.nih.nci.caarray.services.util.dataconverter.test   
gov.nih.nci.caarray.services.vocab   
gov.nih.nci.caarray.services.vocab.ejb   
gov.nih.nci.caarray.ui.biomaterial   
gov.nih.nci.caarray.ui.core   
 

Uses of VocabData in gov.nih.nci.caarray.common.data.array
 

Methods in gov.nih.nci.caarray.common.data.array that return VocabData
 VocabData ArraySearchCriteria.getSubstrateType()
           
 VocabData ArrayGroupData.getSubstrateType()
           
 

Methods in gov.nih.nci.caarray.common.data.array with parameters of type VocabData
 void ArraySearchCriteria.setSubstrateType(VocabData substrateType)
           
 void ArrayGroupData.setSubstrateType(VocabData substrateType)
           
 

Uses of VocabData in gov.nih.nci.caarray.common.data.arraydesign
 

Methods in gov.nih.nci.caarray.common.data.arraydesign that return VocabData
 VocabData ArrayDesignSearchCriteria.getAttachmentType()
           
 VocabData ArrayDesignData.getAttachmentType()
           
 VocabData FeatureGroupSearchCriteria.getFeatureShape()
           
 VocabData FeatureGroupDesc.getFeatureShape()
           
 VocabData DesignProviderRoleData.getRole()
           
 VocabData ReporterGroupSearchCriteria.getSpecies()
           
 VocabData ReporterGroupDesc.getSpecies()
           
 VocabData FeatureGroupSearchCriteria.getSpecies()
           
 VocabData FeatureGroupDesc.getSpecies()
           
 VocabData CompositeGroupSearchCriteria.getSpecies()
           
 VocabData CompositeGroupDesc.getSpecies()
           
 VocabData ArrayDesignData.getSpecies()
           
 VocabData ArrayDesignSearchCriteria.getSpeciesType()
           
 VocabData ArrayDesignSearchCriteria.getStrandType()
           
 VocabData ArrayDesignData.getStrandType()
           
 VocabData ArrayDesignSearchCriteria.getSubstrateType()
           
 VocabData ArrayDesignData.getSubstrateType()
           
 VocabData ArrayDesignSearchCriteria.getSurfaceType()
           
 VocabData ArrayDesignData.getSurfaceType()
           
 VocabData FeatureGroupSearchCriteria.getTechnologyType()
           
 VocabData FeatureGroupDesc.getTechnologyType()
           
 VocabData ArrayDesignSearchCriteria.getTechnologyType()
           
 VocabData ArrayDesignData.getTechnologyType()
           
 

Methods in gov.nih.nci.caarray.common.data.arraydesign with parameters of type VocabData
 void ArrayDesignSearchCriteria.setAttachmentType(VocabData type)
           
 void ArrayDesignData.setAttachmentType(VocabData data)
           
 void FeatureGroupSearchCriteria.setFeatureShape(VocabData data)
           
 void DesignProviderRoleData.setRole(VocabData data)
           
 void ReporterGroupSearchCriteria.setSpecies(VocabData data)
           
 void ReporterGroupDesc.setSpecies(VocabData specie)
           
 void FeatureGroupSearchCriteria.setSpecies(VocabData data)
           
 void FeatureGroupDesc.setSpecies(VocabData specie)
           
 void CompositeGroupSearchCriteria.setSpecies(VocabData data)
           
 void CompositeGroupDesc.setSpecies(VocabData specie)
           
 void ArrayDesignData.setSpecies(VocabData data)
           
 void ArrayDesignSearchCriteria.setSpeciesType(VocabData data)
           
 void ArrayDesignSearchCriteria.setStrandType(VocabData type)
           
 void ArrayDesignData.setStrandType(VocabData data)
           
 void ArrayDesignSearchCriteria.setSubstrateType(VocabData type)
           
 void ArrayDesignData.setSubstrateType(VocabData data)
           
 void ArrayDesignSearchCriteria.setSurfaceType(VocabData type)
           
 void ArrayDesignData.setSurfaceType(VocabData data)
           
 void FeatureGroupSearchCriteria.setTechnologyType(VocabData data)
           
 void FeatureGroupDesc.setTechnologyType(VocabData ttype)
           
 void ArrayDesignSearchCriteria.setTechnologyType(VocabData type)
           
 void ArrayDesignData.setTechnologyType(VocabData data)
           
 

Uses of VocabData in gov.nih.nci.caarray.common.data.biomaterial
 

Fields in gov.nih.nci.caarray.common.data.biomaterial declared as VocabData
protected  VocabData BioMaterialDesc.materialType_
           
protected  VocabData BioMaterialDesc.species_
           
 

Methods in gov.nih.nci.caarray.common.data.biomaterial that return VocabData
 VocabData ActionProtocolTypeMapData.getAction()
           
 VocabData BioSampleDesc.getBioSampleType()
           
 VocabData BioMaterialSearchCriteria.getBiosourceType()
           
 VocabData BioSourceDesc.getBioSourceType()
           
 VocabData[] BioMaterialView.getCharacteristics()
           
 VocabData CompoundMeasurementData.getCompound()
           
 VocabData LabeledExtractView.getLabel()
           
 VocabData LabeledExtractData.getLabel()
           
 VocabData BioMaterialSearchCriteria.getMaterialType()
           
 VocabData BioMaterialDesc.getMaterialType()
           
 VocabData[] ActionProtocolTypeMapData.getProtocolTypes()
           
 VocabData BioMaterialSearchCriteria.getProvider()
           
 VocabData BioMaterialSearchCriteria.getSampleType()
           
 VocabData BioMaterialSearchCriteria.getSpecies()
           
 VocabData BioMaterialDesc.getSpecies()
           
 VocabData TreatmentData.getTreatmentType()
           
 

Methods in gov.nih.nci.caarray.common.data.biomaterial with parameters of type VocabData
 void BioMaterialView.addToCharacteristics(VocabData characteristic)
           
 void ActionProtocolTypeMapData.setAction(VocabData data)
           
 void BioSampleDesc.setBioSampleType(VocabData bioSampleType)
           
 void BioMaterialSearchCriteria.setBiosourceType(VocabData data)
           
 void BioSourceDesc.setBioSourceType(VocabData bioSourceType)
           
 void BioMaterialView.setCharacteristics(VocabData[] characteristics)
           
 void CompoundMeasurementData.setCompound(VocabData compound)
           
 void LabeledExtractView.setLabel(VocabData label)
           
 void LabeledExtractData.setLabel(VocabData label)
           
 void BioMaterialSearchCriteria.setMaterialType(VocabData data)
           
 void BioMaterialDesc.setMaterialType(VocabData materialType)
           
 void ActionProtocolTypeMapData.setProtocolTypes(VocabData[] protocolTypes)
           
 void BioMaterialSearchCriteria.setProvider(VocabData data)
           
 void BioMaterialSearchCriteria.setSampleType(VocabData data)
           
 void BioMaterialSearchCriteria.setSpecies(VocabData data)
           
 void BioMaterialDesc.setSpecies(VocabData species)
           
 void TreatmentData.setTreatmentType(VocabData treatmentType)
           
 

Uses of VocabData in gov.nih.nci.caarray.common.data.experiment
 

Methods in gov.nih.nci.caarray.common.data.experiment that return VocabData
 VocabData ExperimentSearchCriteria.getExperimentType()
           
 VocabData ExperimentProviderRoleData.getRole()
           
 VocabData ExperimentalFactorData.getScale()
           
 VocabData ExperimentSearchCriteria.getSpecies()
           
 VocabData ExperimentDesc.getSpecies()
           
 VocabData ExperimentalFactorData.getType()
           
 VocabData[] QualityControlData.getTypes()
           
 VocabData[] ExperimentDesc.getTypes()
           
 

Methods in gov.nih.nci.caarray.common.data.experiment with parameters of type VocabData
 void ExperimentDesc.addType(VocabData type)
           
 void ExperimentSearchCriteria.setExperimentType(VocabData experimentType_)
           
 void ExperimentProviderRoleData.setRole(VocabData data)
           
 void ExperimentalFactorData.setScale(VocabData scale)
           
 void ExperimentSearchCriteria.setSpecies(VocabData species_)
           
 void ExperimentDesc.setSpecies(VocabData species)
           
 void ExperimentalFactorData.setType(VocabData type)
           
 void QualityControlData.setTypes(VocabData[] types)
           
 void ExperimentDesc.setTypes(VocabData[] types)
           
 

Uses of VocabData in gov.nih.nci.caarray.common.data.measurement
 

Methods in gov.nih.nci.caarray.common.data.measurement that return VocabData
 VocabData UnitData.getName()
           
 VocabData UnitData.getType()
           
 

Methods in gov.nih.nci.caarray.common.data.measurement with parameters of type VocabData
 void UnitData.setName(VocabData unitName)
           
 void UnitData.setType(VocabData type)
           
 

Uses of VocabData in gov.nih.nci.caarray.common.data.protocol
 

Methods in gov.nih.nci.caarray.common.data.protocol that return VocabData
 VocabData ParameterData.getDataType()
           
 VocabData SoftwareSearchCriteria.getType()
           
 VocabData SoftwareDesc.getType()
           
 VocabData ProtocolSearchCriteria.getType()
           
 VocabData ProtocolDesc.getType()
           
 VocabData HardwareSearchCriteria.getType()
           
 VocabData HardwareDesc.getType()
           
 

Methods in gov.nih.nci.caarray.common.data.protocol with parameters of type VocabData
 void ParameterData.setDataType(VocabData type)
           
 void SoftwareSearchCriteria.setType(VocabData type)
           
 void SoftwareDesc.setType(VocabData type)
           
 void ProtocolSearchCriteria.setType(VocabData type)
           
 void ProtocolDesc.setType(VocabData type)
           
 void HardwareSearchCriteria.setType(VocabData type)
           
 void HardwareDesc.setType(VocabData type)
           
 

Uses of VocabData in gov.nih.nci.caarray.common.data.vocab
 

Subclasses of VocabData in gov.nih.nci.caarray.common.data.vocab
 class AgeData
           
 class BiometricsData
           
 class ChromosomalAberrationData
           
 

Methods in gov.nih.nci.caarray.common.data.vocab that return VocabData
 VocabData BiometricsData.getHeightMeasurement()
           
 VocabData AgeData.getInitialTimePoint()
           
 VocabData AgeData.getMaxMeasurement()
           
 VocabData AgeData.getMeasurement()
           
 VocabData AgeData.getMinMeasurement()
           
 VocabData[] ChromosomalAberrationData.getTypes()
           
 VocabData BiometricsData.getWeightMeasurement()
           
 

Methods in gov.nih.nci.caarray.common.data.vocab with parameters of type VocabData
 void ChromosomalAberrationData.addToTypes(VocabData type)
           
 void ChromosomalAberrationData.removeFromTypes(VocabData type)
           
 void BiometricsData.setHeightMeasurement(VocabData measurement)
           
 void AgeData.setInitialTimePoint(VocabData timePoint)
           
 void AgeData.setMaxMeasurement(VocabData measurement)
           
 void AgeData.setMeasurement(VocabData measurement)
           
 void AgeData.setMinMeasurement(VocabData measurement)
           
 void ChromosomalAberrationData.setTypes(VocabData[] types)
           
 void BiometricsData.setWeightMeasurement(VocabData measurement)
           
 

Uses of VocabData in gov.nih.nci.caarray.common.delegate
 

Methods in gov.nih.nci.caarray.common.delegate that return VocabData
 VocabData[] VocabManagerDelegate.getProtocolTypes(long actionId)
           
 VocabData VocabManagerDelegate.getVocabulary(long vocabId)
           
 

Methods in gov.nih.nci.caarray.common.delegate with parameters of type VocabData
 long BioMaterialManagerDelegate.addBioSource(BioSourceData bioSourceData, VocabData[] characteristics)
           
 long VocabManagerDelegate.addVocabulary(VocabData vocab)
           
 long VocabManagerDelegate.addVocabulary(VocabData vocab, long parentVocabId)
           
 void BioMaterialManagerDelegate.updateBioMaterialCharacteristics(long bioMaterialId, VocabData[] characteristics)
           
 void VocabManagerDelegate.updateVocabulary(VocabData vocabData)
           
 

Uses of VocabData in gov.nih.nci.caarray.services.biomaterial
 

Methods in gov.nih.nci.caarray.services.biomaterial that return VocabData
static VocabData[] BioMaterialUtils.toVocabData(OntologyEntry[] characteristics)
           
 

Methods in gov.nih.nci.caarray.services.biomaterial with parameters of type VocabData
static OntologyEntry[] BioMaterialUtils.toOntologyEntries(VocabData[] characteristics)
           
 

Uses of VocabData in gov.nih.nci.caarray.services.biomaterial.ejb
 

Methods in gov.nih.nci.caarray.services.biomaterial.ejb with parameters of type VocabData
 long BioMaterialManagerEJB.addBioSource(BioSourceData bioSourceData, VocabData[] characteristics)
          Adds the specified BioSource to the persistence store
 void BioMaterialManagerEJB.updateBioMaterialCharacteristics(long bioSourceId, VocabData[] characteristics)
          Performs the following: Update the characteristics with the new data if they exist (ID > 0) and are currently associated with the specified BioMaterial.
 

Uses of VocabData in gov.nih.nci.caarray.services.util.dataconverter.test
 

Methods in gov.nih.nci.caarray.services.util.dataconverter.test that return VocabData
static VocabData TestVocabConversion.createVocabData()
           
static VocabData TestParameterConversion.createVocabData(long id, java.lang.String category, java.lang.String name)
           
 

Methods in gov.nih.nci.caarray.services.util.dataconverter.test with parameters of type VocabData
static void TestVocabConversion.compare(OntologyEntry entry, VocabData vocabData)
           
 

Uses of VocabData in gov.nih.nci.caarray.services.vocab
 

Methods in gov.nih.nci.caarray.services.vocab with parameters of type VocabData
static void VocabUtils.copy(OntologyEntry entry, VocabData vocab)
           
static void VocabUtils.copy(VocabData vocab, OntologyEntry entry)
           
 

Uses of VocabData in gov.nih.nci.caarray.services.vocab.ejb
 

Methods in gov.nih.nci.caarray.services.vocab.ejb that return VocabData
 VocabData[] VocabManagerEJB.getProtocolTypes(long actionId)
          Retrieves an array of controlled vocabularies representing protocol types given the ID of a controlled vocabulary representing a treatment action.
 VocabData VocabManagerEJB.getVocabulary(long vocabId)
           
 

Methods in gov.nih.nci.caarray.services.vocab.ejb with parameters of type VocabData
 long VocabManagerEJB.addVocabulary(VocabData vocabData)
           
 long VocabManagerEJB.addVocabulary(VocabData vocabData, long parentVocabId)
           
 void VocabManagerEJB.updateVocabulary(VocabData vocabData)
           
 

Uses of VocabData in gov.nih.nci.caarray.ui.biomaterial
 

Fields in gov.nih.nci.caarray.ui.biomaterial declared as VocabData
protected  VocabData[] BiomaterialBaseForm.biomaterialCharacteristics_
           
 

Methods in gov.nih.nci.caarray.ui.biomaterial that return VocabData
 VocabData[] SampleUpdateForm.getBiomaterialCharacteristics()
           
 VocabData[] SampleDetailForm.getBiomaterialCharacteristics()
           
 VocabData[] BiomaterialBaseForm.getBiomaterialCharacteristics()
           
 

Methods in gov.nih.nci.caarray.ui.biomaterial with parameters of type VocabData
 void SampleUpdateForm.setBiomaterialCharacteristics(VocabData[] biomaterialCharacteristics)
           
 void SampleDetailForm.setBiomaterialCharacteristics(VocabData[] biomaterialCharacteristics)
           
 void BiomaterialBaseForm.setBiomaterialCharacteristics(VocabData[] collection)
           
 

Uses of VocabData in gov.nih.nci.caarray.ui.core
 

Methods in gov.nih.nci.caarray.ui.core with parameters of type VocabData
static long ActionUtils.getNonNullDataId(VocabData vocabData)
           
static java.lang.String ActionUtils.getNonNullDataName(VocabData vocabData)