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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Array.ManufactureLIMS
public class ManufactureLIMS
Information on the physical production of arrays within the laboratory.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
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HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
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HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected BioMaterial |
bioMaterial
The BioMaterial used for the feature. |
protected Feature |
feature
The feature whose LIMS information is being described. |
protected DatabaseEntry |
identifierLIMS
Association to a LIMS data source for further information on the manufacturing process. |
protected java.lang.String |
ojbConcreteClass
|
Fields inherited from class org.biomage.Common.Describable |
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security |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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ManufactureLIMS()
Default constructor. |
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ManufactureLIMS(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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boolean |
emptyMAGEobject()
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BioMaterial |
getBioMaterial()
Get method for bioMaterial |
Feature |
getFeature()
Get method for feature |
DatabaseEntry |
getIdentifierLIMS()
Get method for identifierLIMS |
java.lang.String |
getModelClassName()
|
java.lang.String |
getQuality()
Get method for quality |
void |
setBioMaterial(BioMaterial bioMaterial)
Set method for bioMaterial |
void |
setFeature(Feature feature)
Set method for feature |
void |
setIdentifierLIMS(DatabaseEntry identifierLIMS)
Set method for identifierLIMS |
void |
setQuality(java.lang.String quality)
Set method for quality |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Describable |
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addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAttributes, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.lang.String ojbConcreteClass
protected Feature feature
protected BioMaterial bioMaterial
protected DatabaseEntry identifierLIMS
Constructor Detail |
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public ManufactureLIMS()
public ManufactureLIMS(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Describable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Describable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Describable
java.io.IOException
public void setQuality(java.lang.String quality)
value
- to setpublic java.lang.String getQuality()
public java.lang.String getModelClassName()
getModelClassName
in class Describable
public void setFeature(Feature feature)
setFeature
in interface HasFeature
value
- to setpublic Feature getFeature()
getFeature
in interface HasFeature
public void setBioMaterial(BioMaterial bioMaterial)
setBioMaterial
in interface HasBioMaterial
value
- to setpublic BioMaterial getBioMaterial()
getBioMaterial
in interface HasBioMaterial
public void setIdentifierLIMS(DatabaseEntry identifierLIMS)
setIdentifierLIMS
in interface HasIdentifierLIMS
value
- to setpublic DatabaseEntry getIdentifierLIMS()
getIdentifierLIMS
in interface HasIdentifierLIMS
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