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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.ArrayDesign.ZoneGroup
public class ZoneGroup
Specifies a repeating area on an array. This is useful for printing when the same pattern is repeated in a regular fashion.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasZoneLocations |
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HasZoneLocations.ZoneLocations_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected DistanceUnit |
distanceUnit
Unit for the ZoneGroup attributes. |
protected ZoneLayout |
zoneLayout
Describes the rectangular layout of features in the array design. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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ZoneGroup()
Default constructor. |
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ZoneGroup(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToZoneLocations(int position,
Zone zone)
Method to add Zone at position to ZoneLocations_list |
void |
addToZoneLocations(Zone zone)
Method to add Zone to ZoneLocations_list |
boolean |
emptyMAGEobject()
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DistanceUnit |
getDistanceUnit()
Get method for distanceUnit |
Zone |
getFromZoneLocations(int position)
Method to get Zone from ZoneLocations_list |
java.lang.String |
getModelClassName()
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java.lang.Float |
getSpacingsBetweenZonesX()
Get method for spacingsBetweenZonesX |
java.lang.Float |
getSpacingsBetweenZonesY()
Get method for spacingsBetweenZonesY |
ZoneLayout |
getZoneLayout()
Get method for zoneLayout |
HasZoneLocations.ZoneLocations_list |
getZoneLocations()
Get method for zoneLocations |
java.lang.Integer |
getZonesPerX()
Get method for zonesPerX |
java.lang.Integer |
getZonesPerY()
Get method for zonesPerY |
void |
removeElementAtFromZoneLocations(int position)
Method to remove by position from ZoneLocations_list |
void |
removeFromZoneLocations(Zone zone)
Method to remove first Zone from ZoneLocations_list |
void |
setAttributes(org.xml.sax.Attributes atts)
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void |
setDistanceUnit(DistanceUnit distanceUnit)
Set method for distanceUnit |
void |
setSpacingsBetweenZonesX(java.lang.Float spacingsBetweenZonesX)
Set method for spacingsBetweenZonesX |
void |
setSpacingsBetweenZonesY(java.lang.Float spacingsBetweenZonesY)
Set method for spacingsBetweenZonesY |
void |
setZoneLayout(ZoneLayout zoneLayout)
Set method for zoneLayout |
void |
setZoneLocations(HasZoneLocations.ZoneLocations_list zoneLocations)
Set method for zoneLocations |
void |
setZonesPerX(java.lang.Integer zonesPerX)
Set method for zonesPerX |
void |
setZonesPerY(java.lang.Integer zonesPerY)
Set method for zonesPerY |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected DistanceUnit distanceUnit
protected ZoneLayout zoneLayout
Constructor Detail |
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public ZoneGroup()
public ZoneGroup(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class Extendable
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public void setSpacingsBetweenZonesX(java.lang.Float spacingsBetweenZonesX)
value
- to setpublic java.lang.Float getSpacingsBetweenZonesX()
public void setSpacingsBetweenZonesY(java.lang.Float spacingsBetweenZonesY)
value
- to setpublic java.lang.Float getSpacingsBetweenZonesY()
public void setZonesPerX(java.lang.Integer zonesPerX)
value
- to setpublic java.lang.Integer getZonesPerX()
public void setZonesPerY(java.lang.Integer zonesPerY)
value
- to setpublic java.lang.Integer getZonesPerY()
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setDistanceUnit(DistanceUnit distanceUnit)
setDistanceUnit
in interface HasDistanceUnit
value
- to setpublic DistanceUnit getDistanceUnit()
getDistanceUnit
in interface HasDistanceUnit
public void setZoneLayout(ZoneLayout zoneLayout)
setZoneLayout
in interface HasZoneLayout
value
- to setpublic ZoneLayout getZoneLayout()
getZoneLayout
in interface HasZoneLayout
public void setZoneLocations(HasZoneLocations.ZoneLocations_list zoneLocations)
setZoneLocations
in interface HasZoneLocations
value
- to setpublic HasZoneLocations.ZoneLocations_list getZoneLocations()
getZoneLocations
in interface HasZoneLocations
public void addToZoneLocations(Zone zone)
addToZoneLocations
in interface HasZoneLocations
public void addToZoneLocations(int position, Zone zone)
addToZoneLocations
in interface HasZoneLocations
public Zone getFromZoneLocations(int position)
getFromZoneLocations
in interface HasZoneLocations
public void removeElementAtFromZoneLocations(int position)
removeElementAtFromZoneLocations
in interface HasZoneLocations
public void removeFromZoneLocations(Zone zone)
removeFromZoneLocations
in interface HasZoneLocations
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