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Package Hierarchies:
gov.nih.nci.caarray.common.data.array
,
gov.nih.nci.caarray.common.data.arraydesign
,
gov.nih.nci.caarray.common.data.biomaterial
,
gov.nih.nci.caarray.common.data.contact
,
gov.nih.nci.caarray.common.data.designelement
,
gov.nih.nci.caarray.common.data.experiment
,
gov.nih.nci.caarray.common.data.fileupload2
,
gov.nih.nci.caarray.common.data.measurement
,
gov.nih.nci.caarray.common.data.protocol
,
gov.nih.nci.caarray.common.data.security
,
gov.nih.nci.caarray.common.data.useradmin
,
gov.nih.nci.caarray.common.data.util
,
gov.nih.nci.caarray.common.data.vocab
,
gov.nih.nci.caarray.common.delegate
,
gov.nih.nci.caarray.common.exception
,
gov.nih.nci.caarray.common.util
,
gov.nih.nci.caarray.loader
,
gov.nih.nci.caarray.services.array
,
gov.nih.nci.caarray.services.array.ejb
,
gov.nih.nci.caarray.services.array.test
,
gov.nih.nci.caarray.services.arraydesign
,
gov.nih.nci.caarray.services.arraydesign.ejb
,
gov.nih.nci.caarray.services.arraydesign.loader
,
gov.nih.nci.caarray.services.arraydesign.loader.affymetrix
,
gov.nih.nci.caarray.services.arraydesign.loader.agilent
,
gov.nih.nci.caarray.services.arraydesign.loader.genepix
,
gov.nih.nci.caarray.services.arraydesign.loader.handler
,
gov.nih.nci.caarray.services.arraydesign.loader.illumina
,
gov.nih.nci.caarray.services.arraydesign.loader.imagene
,
gov.nih.nci.caarray.services.arraydesign.loader.ucsf
,
gov.nih.nci.caarray.services.arraydesign.test
,
gov.nih.nci.caarray.services.bioassaydata
,
gov.nih.nci.caarray.services.bioassaydata.descriptor
,
gov.nih.nci.caarray.services.bioassaydata.reader
,
gov.nih.nci.caarray.services.biomaterial
,
gov.nih.nci.caarray.services.biomaterial.ejb
,
gov.nih.nci.caarray.services.biomaterial.test
,
gov.nih.nci.caarray.services.contact
,
gov.nih.nci.caarray.services.contact.ejb
,
gov.nih.nci.caarray.services.contact.test
,
gov.nih.nci.caarray.services.exception
,
gov.nih.nci.caarray.services.experiment
,
gov.nih.nci.caarray.services.experiment.ejb
,
gov.nih.nci.caarray.services.experiment.test
,
gov.nih.nci.caarray.services.fileparse
,
gov.nih.nci.caarray.services.fileparse.gal
,
gov.nih.nci.caarray.services.fileparse.gal.magemapping
,
gov.nih.nci.caarray.services.fileparse.gpr
,
gov.nih.nci.caarray.services.fileparse.mdb
,
gov.nih.nci.caarray.services.fileparse.test
,
gov.nih.nci.caarray.services.fileparse.test.usecases
,
gov.nih.nci.caarray.services.fileparse2
,
gov.nih.nci.caarray.services.fileparse2.arraydesign
,
gov.nih.nci.caarray.services.fileparse2.arraydesign.test
,
gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers
,
gov.nih.nci.caarray.services.fileparse2.hybridization
,
gov.nih.nci.caarray.services.fileparse2.mdb
,
gov.nih.nci.caarray.services.fileparse2.parsers
,
gov.nih.nci.caarray.services.fileparse2.parsers.test
,
gov.nih.nci.caarray.services.fileparse2.util
,
gov.nih.nci.caarray.services.fileupload
,
gov.nih.nci.caarray.services.fileupload2
,
gov.nih.nci.caarray.services.fileupload2.ejb
,
gov.nih.nci.caarray.services.fileupload2.mdb
,
gov.nih.nci.caarray.services.hybridization
,
gov.nih.nci.caarray.services.hybridization.ejb
,
gov.nih.nci.caarray.services.mageloader
,
gov.nih.nci.caarray.services.mageloader.test
,
gov.nih.nci.caarray.services.mageml
,
gov.nih.nci.caarray.services.mageml.ejb
,
gov.nih.nci.caarray.services.mageml.mdb
,
gov.nih.nci.caarray.services.protocol
,
gov.nih.nci.caarray.services.protocol.ejb
,
gov.nih.nci.caarray.services.protocol.test
,
gov.nih.nci.caarray.services.security
,
gov.nih.nci.caarray.services.security.db
,
gov.nih.nci.caarray.services.security.ejb
,
gov.nih.nci.caarray.services.security.intf
,
gov.nih.nci.caarray.services.security.mageom
,
gov.nih.nci.caarray.services.security.mageom.mdb
,
gov.nih.nci.caarray.services.security.test
,
gov.nih.nci.caarray.services.security.test.usecases
,
gov.nih.nci.caarray.services.test
,
gov.nih.nci.caarray.services.test.ejb
,
gov.nih.nci.caarray.services.test.usecases
,
gov.nih.nci.caarray.services.useradmin
,
gov.nih.nci.caarray.services.useradmin.ejb
,
gov.nih.nci.caarray.services.useradmin.test
,
gov.nih.nci.caarray.services.util
,
gov.nih.nci.caarray.services.util.cache
,
gov.nih.nci.caarray.services.util.dataconverter
,
gov.nih.nci.caarray.services.util.dataconverter.assembler
,
gov.nih.nci.caarray.services.util.dataconverter.mapper
,
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers
,
gov.nih.nci.caarray.services.util.dataconverter.test
,
gov.nih.nci.caarray.services.util.db
,
gov.nih.nci.caarray.services.util.file
,
gov.nih.nci.caarray.services.util.fileuploadapplet
,
gov.nih.nci.caarray.services.util.httpfileuploadapplet
,
gov.nih.nci.caarray.services.util.jms
,
gov.nih.nci.caarray.services.util.mage
,
gov.nih.nci.caarray.services.util.netcdf
,
gov.nih.nci.caarray.services.util.netcdf.test
,
gov.nih.nci.caarray.services.util.netcdf.test.usecases
,
gov.nih.nci.caarray.services.util.ojb
,
gov.nih.nci.caarray.services.util.ojb.conversions
,
gov.nih.nci.caarray.services.util.parse
,
gov.nih.nci.caarray.services.util.properties
,
gov.nih.nci.caarray.services.util.transaction
,
gov.nih.nci.caarray.services.vocab
,
gov.nih.nci.caarray.services.vocab.ejb
,
gov.nih.nci.caarray.services.vocab.test
,
gov.nih.nci.caarray.ui
,
gov.nih.nci.caarray.ui.arraydesign
,
gov.nih.nci.caarray.ui.biomaterial
,
gov.nih.nci.caarray.ui.contact
,
gov.nih.nci.caarray.ui.core
,
gov.nih.nci.caarray.ui.experiment
,
gov.nih.nci.caarray.ui.experiment.data
,
gov.nih.nci.caarray.ui.login
,
gov.nih.nci.caarray.ui.ontology
,
gov.nih.nci.caarray.ui.protocol
,
gov.nih.nci.caarray.ui.test
,
gov.nih.nci.caarray.ui.useradmin
,
org.biomage.Array
,
org.biomage.ArrayDesign
,
org.biomage.AuditAndSecurity
,
org.biomage.BioAssay
,
org.biomage.BioAssayData
,
org.biomage.BioEvent
,
org.biomage.BioMaterial
,
org.biomage.BioSequence
,
org.biomage.BQS
,
org.biomage.Common
,
org.biomage.Description
,
org.biomage.Description.Ontology
,
org.biomage.DesignElement
,
org.biomage.Experiment
,
org.biomage.HigherLevelAnalysis
,
org.biomage.Interface
,
org.biomage.Measurement
,
org.biomage.Protocol
,
org.biomage.QuantitationType
,
org.biomage.tools.apps.annot
,
org.biomage.tools.apps.annot.data
,
org.biomage.tools.apps.annot.pages
,
org.biomage.tools.apps.annot.validator
,
org.biomage.tools.generate_classes
,
org.biomage.tools.generate_cpp
,
org.biomage.tools.generate_doc
,
org.biomage.tools.generate_dtd
,
org.biomage.tools.generate_er
,
org.biomage.tools.generate_java
,
org.biomage.tools.helpers
,
org.biomage.tools.xmlutils
Class Hierarchy
java.lang.Object
java.util.AbstractCollection<E> (implements java.util.Collection<E>)
java.util.AbstractList<E> (implements java.util.List<E>)
java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
gov.nih.nci.caarray.services.util.jms.
DefaultJMSMessageCollection
(implements gov.nih.nci.caarray.services.util.jms.
JMSMessageCollection
)
java.util.Vector<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
org.biomage.Array.
Array_package.Array_list
org.biomage.Array.
Array_package.ArrayGroup_list
org.biomage.Array.
Array_package.ArrayManufacture_list
org.biomage.ArrayDesign.
ArrayDesign_package.ArrayDesign_list
org.biomage.ArrayDesign.
ArrayDesign_package.CompositeGroup_list
org.biomage.ArrayDesign.
ArrayDesign_package.ReporterGroup_list
org.biomage.AuditAndSecurity.
AuditAndSecurity_package.Contact_list
org.biomage.AuditAndSecurity.
AuditAndSecurity_package.Security_list
org.biomage.AuditAndSecurity.
AuditAndSecurity_package.SecurityGroup_list
org.biomage.BioAssay.
BioAssay_package.BioAssay_list
org.biomage.BioAssay.
BioAssay_package.Channel_list
org.biomage.BioAssayData.
BioAssayData_package.BioAssayData_list
org.biomage.BioAssayData.
BioAssayData_package.BioAssayDimension_list
org.biomage.BioAssayData.
BioAssayData_package.BioAssayMap_list
org.biomage.BioAssayData.
BioAssayData_package.DesignElementDimension_list
org.biomage.BioAssayData.
BioAssayData_package.QuantitationTypeDimension_list
org.biomage.BioAssayData.
BioAssayData_package.QuantitationTypeMap_list
org.biomage.BioMaterial.
BioMaterial_package.BioMaterial_list
org.biomage.BioMaterial.
BioMaterial_package.Compound_list
org.biomage.BioSequence.
BioSequence_package.BioSequence_list
org.biomage.Description.
Description_package.Database_list
org.biomage.DesignElement.
DesignElement_package.CompositeCompositeMap_list
org.biomage.DesignElement.
DesignElement_package.CompositeSequence_list
org.biomage.DesignElement.
DesignElement_package.FeatureReporterMap_list
org.biomage.DesignElement.
DesignElement_package.Reporter_list
org.biomage.DesignElement.
DesignElement_package.ReporterCompositeMap_list
org.biomage.Experiment.
Experiment_package.Experiment_list
org.biomage.HigherLevelAnalysis.
HigherLevelAnalysis_package.BioAssayDataCluster_list
org.apache.ojb.broker.util.collections.ManageableVector (implements org.apache.ojb.broker.ManageableCollection)
org.biomage.Interface.
HasAccessions.Accessions_list
org.biomage.Interface.
HasAdjustments.Adjustments_list
org.biomage.Interface.
HasAnalysisResults.AnalysisResults_list
org.biomage.Interface.
HasAnnotations.Annotations_list
org.biomage.Interface.
HasArrayManufactureDeviations.ArrayManufactureDeviations_list
org.biomage.Interface.
HasArrayManufacturers.ArrayManufacturers_list
org.biomage.Interface.
HasArrays.Arrays_list
org.biomage.Interface.
HasAssociations.Associations_list
org.biomage.Interface.
HasAuditTrail.AuditTrail_list
org.biomage.Interface.
HasBibliographicReferences.BibliographicReferences_list
org.biomage.Interface.
HasBioAssayData.BioAssayData_list
org.biomage.Interface.
HasBioAssayDataSources.BioAssayDataSources_list
org.biomage.Interface.
HasBioAssayFactorValues.BioAssayFactorValues_list
org.biomage.Interface.
HasBioAssayMaps.BioAssayMaps_list
org.biomage.Interface.
HasBioAssays.BioAssays_list
org.biomage.Interface.
HasBioAssayTreatments.BioAssayTreatments_list
org.biomage.Interface.
HasBioAssayTupleData.BioAssayTuples_list
org.biomage.Interface.
HasBiologicalCharacteristics.BiologicalCharacteristics_list
org.biomage.Interface.
HasChannels.Channels_list
org.biomage.Interface.
HasCharacteristics.Characteristics_list
org.biomage.Interface.
HasComponentCompounds.ComponentCompounds_list
org.biomage.Interface.
HasCompositeCompositeMaps.CompositeCompositeMaps_list
org.biomage.Interface.
HasCompositeGroups.CompositeGroups_list
org.biomage.Interface.
HasCompositePositionSources.CompositePositionSources_list
org.biomage.Interface.
HasCompositeSequences.CompositeSequences_list
org.biomage.Interface.
HasCompoundIndices.CompoundIndices_list
org.biomage.Interface.
HasCompoundMeasurements.CompoundMeasurements_list
org.biomage.Interface.
HasConfidenceIndicators.ConfidenceIndicators_list
org.biomage.Interface.
HasContacts.Contacts_list
org.biomage.Interface.
HasContainedFeatures.ContainedFeatures_list
org.biomage.Interface.
HasControlFeatures.ControlFeatures_list
org.biomage.Interface.
HasControlledFeatures.ControlledFeatures_list
org.biomage.Interface.
HasDatabaseReferences.DatabaseReferences_list
org.biomage.Interface.
HasDerivedBioAssayData.DerivedBioAssayData_list
org.biomage.Interface.
HasDerivedBioAssayMap.DerivedBioAssayMap_list
org.biomage.Interface.
HasDescriptions.Descriptions_list
org.biomage.Interface.
HasDesignElementMaps.DesignElementMaps_list
org.biomage.Interface.
HasDesignElementTuples.DesignElementTuples_list
org.biomage.Interface.
HasDesignProviders.DesignProviders_list
org.biomage.Interface.
HasExperimentalFactors.ExperimentalFactors_list
org.biomage.Interface.
HasExperimentDesigns.ExperimentDesigns_list
org.biomage.Interface.
HasFactorValues.FactorValues_list
org.biomage.Interface.
HasFailTypes.FailTypes_list
org.biomage.Interface.
HasFeatureDefects.FeatureDefects_list
org.biomage.Interface.
HasFeatureGroups.FeatureGroups_list
org.biomage.Interface.
HasFeatureInformationSources.FeatureInformationSources_list
org.biomage.Interface.
HasFeatureLIMSs.FeatureLIMSs_list
org.biomage.Interface.
HasFeatureReporterMaps.FeatureReporterMaps_list
org.biomage.Interface.
HasFeatures.Features_list
org.biomage.Interface.
HasFiducials.Fiducials_list
org.biomage.Interface.
HasHardwareApplications.HardwareApplications_list
org.biomage.Interface.
HasHardwareManufacturers.HardwareManufacturers_list
org.biomage.Interface.
HasHardwares.Hardwares_list
org.biomage.Interface.
HasImages.Images_list
org.biomage.Interface.
HasImmobilizedCharacteristics.ImmobilizedCharacteristics_list
org.biomage.Interface.
HasLabels.Labels_list
org.biomage.Interface.
HasMeasuredBioAssayData.MeasuredBioAssayData_list
org.biomage.Interface.
HasMembers.Members_list
org.biomage.Interface.
HasMismatchInformation.MismatchInformation_list
org.biomage.Interface.
HasNodeContents.NodeContents_list
org.biomage.Interface.
HasNodes.Nodes_list
org.biomage.Interface.
HasNodeValue.NodeValue_list
org.biomage.Interface.
HasOntologyEntries.OntologyEntries_list
org.biomage.Interface.
HasOwner.Owner_list
org.biomage.Interface.
HasParameters.Parameters_list
org.biomage.Interface.
HasParameterTypes.ParameterTypes_list
org.biomage.Interface.
HasParameterValues.ParameterValues_list
org.biomage.Interface.
HasPerformers.Performers_list
org.biomage.Interface.
HasPhysicalBioAssayData.PhysicalBioAssayData_list
org.biomage.Interface.
HasPropertySets.PropertySets_list
org.biomage.Interface.
HasProtocolApplications.ProtocolApplications_list
org.biomage.Interface.
HasProviders.Providers_list
org.biomage.Interface.
HasQualityControlStatistics.QualityControlStatistics_list
org.biomage.Interface.
HasQuantitationTypeMaps.QuantitationTypeMaps_list
org.biomage.Interface.
HasQuantitationTypes.QuantitationTypes_list
org.biomage.Interface.
HasQuantitationTypeTuples.QuantitationTypeTuples_list
org.biomage.Interface.
HasRegions.Regions_list
org.biomage.Interface.
HasReporterCompositeMaps.ReporterCompositeMaps_list
org.biomage.Interface.
HasReporterGroups.ReporterGroups_list
org.biomage.Interface.
HasReporterPositionSources.ReporterPositionSources_list
org.biomage.Interface.
HasReporters.Reporters_list
org.biomage.Interface.
HasRoles.Roles_list
org.biomage.Interface.
HasSecurityGroups.SecurityGroups_list
org.biomage.Interface.
HasSeqFeatures.SeqFeatures_list
org.biomage.Interface.
HasSequenceDatabases.SequenceDatabases_list
org.biomage.Interface.
HasSoftwareApplications.SoftwareApplications_list
org.biomage.Interface.
HasSoftwareManufacturers.SoftwareManufacturers_list
org.biomage.Interface.
HasSoftwares.Softwares_list
org.biomage.Interface.
HasSourceBioAssays.SourceBioAssays_list
org.biomage.Interface.
HasSourceBioMaterialMeasurements.SourceBioMaterialMeasurements_list
org.biomage.Interface.
HasSourceContact.SourceContact_list
org.biomage.Interface.
HasSourcesQuantitationType.SourcesQuantitationType_list
org.biomage.Interface.
HasSubregions.Subregions_list
org.biomage.Interface.
HasSummaryStatistics.SummaryStatistics_list
org.biomage.Interface.
HasTopBioMaterial.TopLevelBioMaterials_list
org.biomage.Interface.
HasTopLevelBioAssays.TopLevelBioAssays_list
org.biomage.Interface.
HasTreatments.Treatments_list
org.biomage.Interface.
HasTypes.Types_list
org.biomage.Interface.
HasZoneGroups.ZoneGroups_list
org.biomage.Interface.
HasZoneLocations.ZoneLocations_list
org.biomage.Protocol.
Protocol_package.Hardware_list
org.biomage.Protocol.
Protocol_package.Protocol_list
org.biomage.Protocol.
Protocol_package.Software_list
org.biomage.QuantitationType.
QuantitationType_package.QuantitationType_list
gov.nih.nci.caarray.services.bioassaydata.reader.
AbstractDataFileReader
gov.nih.nci.caarray.services.bioassaydata.reader.
AbstractDataExternalTxtReader
gov.nih.nci.caarray.services.bioassaydata.reader.
TabDelimitedTxtReader
gov.nih.nci.caarray.services.bioassaydata.reader.
WhiteSpaceDelimitedTxtReader
gov.nih.nci.caarray.services.bioassaydata.reader.
AbstractIlluminaCsvReader
gov.nih.nci.caarray.services.bioassaydata.reader.
AgilentTxtReader
gov.nih.nci.caarray.services.bioassaydata.reader.
GenepixGprReader
gov.nih.nci.caarray.services.bioassaydata.reader.
ImageneTxtReader
gov.nih.nci.caarray.services.bioassaydata.reader.
UCSFSpotGprReader
java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
org.biomage.tools.xmlutils.
MultiHashMap
(implements org.biomage.tools.xmlutils.
MultiMap
)
org.apache.ojb.broker.cache.AbstractMetaCache (implements org.apache.ojb.broker.cache.ObjectCache)
gov.nih.nci.caarray.services.util.cache.
ObjectCacheEHCachePerClassImpl
org.apache.ojb.broker.util.sequence.AbstractSequenceManager (implements org.apache.ojb.broker.util.sequence.SequenceManager)
org.apache.ojb.broker.util.sequence.SequenceManagerHighLowImpl
gov.nih.nci.caarray.services.util.ojb.
CaArraySequenceManagerHighLowImpl
org.jboss.security.auth.spi.AbstractServerLoginModule (implements javax.security.auth.spi.LoginModule)
gov.nih.nci.caarray.services.security.
CaArrayLoginModule
gov.nih.nci.caarray.services.util.
AbstractSessionBean
gov.nih.nci.caarray.services.useradmin.ejb.
AdminManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.arraydesign.ejb.
ArrayDesignManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.array.ejb.
ArrayManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.biomaterial.ejb.
BioMaterialManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.security.ejb.
CaSecurityManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.contact.ejb.
ContactManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.experiment.ejb.
ExperimentManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.fileupload2.ejb.
FileUploadManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.protocol.ejb.
HardwareManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.hybridization.ejb.
HybridizationFileHandlerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.mageml.ejb.
MAGEMLManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.protocol.ejb.
ProtocolManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.security.ejb.
SecurityManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.protocol.ejb.
SoftwareManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.test.ejb.
TestManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.vocab.ejb.
VocabManagerEJB
(implements javax.ejb.SessionBean)
gov.nih.nci.caarray.services.fileparse.test.usecases.
AbstractUseCase
(implements gov.nih.nci.caarray.services.fileparse.test.usecases.
UseCase
)
gov.nih.nci.caarray.services.fileparse.test.usecases.
CanParseFiles
gov.nih.nci.caarray.services.security.test.usecases.
AbstractUseCase
(implements gov.nih.nci.caarray.services.security.test.usecases.
UseCase
)
gov.nih.nci.caarray.services.security.test.usecases.
CanUserAccessElement
gov.nih.nci.caarray.services.security.test.usecases.
CanUserAccessElementItf
gov.nih.nci.caarray.services.security.test.usecases.
CanUserAccessElementItfPG
gov.nih.nci.caarray.services.security.test.usecases.
CreateSecuredElement
gov.nih.nci.caarray.services.security.test.usecases.
GetElementProtectionGroups
gov.nih.nci.caarray.services.security.test.usecases.
GetProtectionGroups
gov.nih.nci.caarray.services.security.test.usecases.
GetUserRole
gov.nih.nci.caarray.services.security.test.usecases.
IsUsrElementOwner
gov.nih.nci.caarray.services.security.test.usecases.
RemoveSecuredElement
gov.nih.nci.caarray.services.security.test.usecases.
SetSecuredElementOwner
gov.nih.nci.caarray.services.security.test.usecases.
SetSecuredElementProtectionGroups
gov.nih.nci.caarray.services.test.usecases.
AbstractUseCase
(implements gov.nih.nci.caarray.services.test.usecases.
UseCase
)
gov.nih.nci.caarray.services.test.usecases.
ExportMAGEML
gov.nih.nci.caarray.services.test.usecases.
PersistArrayDesign
gov.nih.nci.caarray.services.test.usecases.
PersistExperiment
gov.nih.nci.caarray.services.test.usecases.
PersistProtocol
gov.nih.nci.caarray.services.util.netcdf.test.usecases.
AbstractUseCase
(implements gov.nih.nci.caarray.services.util.netcdf.test.usecases.
UseCase
)
gov.nih.nci.caarray.services.util.netcdf.test.usecases.
CanGetBioAssayDatum
gov.nih.nci.caarray.services.util.netcdf.test.usecases.
CanGetByQuantitationType
org.apache.struts.action.Action
gov.nih.nci.caarray.ui.core.
BaseAction
gov.nih.nci.caarray.ui.experiment.
AddExperimentPublicationAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignAction
gov.nih.nci.caarray.ui.biomaterial.
BiomaterialAction
gov.nih.nci.caarray.ui.contact.
ContactsAction
gov.nih.nci.caarray.ui.experiment.
ExperimentAction
gov.nih.nci.caarray.ui.experiment.
ExperimentAdditionalQualifierAction
gov.nih.nci.caarray.ui.experiment.
ExperimentAdditionalUploadFilePageAction
gov.nih.nci.caarray.ui.experiment.
ExperimentContactPageAction
gov.nih.nci.caarray.ui.experiment.
ExperimentDataProcessingPageAction
gov.nih.nci.caarray.ui.experiment.
ExperimentDetailPageAction
gov.nih.nci.caarray.ui.experiment.
ExperimentImportMageMLAction
gov.nih.nci.caarray.ui.experiment.
ExperimentNewAdditionalQualifierAction
gov.nih.nci.caarray.ui.experiment.
ExperimentNewPageAction
gov.nih.nci.caarray.ui.experiment.
ExperimentNewPageContinueAction
gov.nih.nci.caarray.ui.experiment.
ExperimentSearchAction
gov.nih.nci.caarray.ui.experiment.
ExperimentUploadAction
gov.nih.nci.caarray.ui.login.
HomeAction
gov.nih.nci.caarray.ui.core.
IndexAction
gov.nih.nci.caarray.ui.login.
LoginAction
gov.nih.nci.caarray.ui.login.
LogoutAction
gov.nih.nci.caarray.ui.ontology.
OntologyAction
gov.nih.nci.caarray.ui.experiment.
PerformExperimentSearchAction
gov.nih.nci.caarray.ui.protocol.
ProtocolAction
gov.nih.nci.caarray.ui.login.
PublicExperimentDetailAction
gov.nih.nci.caarray.ui.login.
PublicSearchAction
gov.nih.nci.caarray.ui.login.
RegisterAction
gov.nih.nci.caarray.ui.useradmin.
UserAdminAction
org.apache.struts.actions.DispatchAction
gov.nih.nci.caarray.ui.core.
BaseDispatchAction
gov.nih.nci.caarray.ui.experiment.
AddExperimentFactorAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayAddUpdateAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayCopyAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignAddAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignDetailAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignFileProcessAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignSearchAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignUpdateAction
gov.nih.nci.caarray.ui.arraydesign.
ArrayDetailAction
gov.nih.nci.caarray.ui.arraydesign.
ArraySearchAction
gov.nih.nci.caarray.ui.biomaterial.
BiomaterialCharacteristicsAction
gov.nih.nci.caarray.ui.biomaterial.
BiosourceAddUpdateAction
gov.nih.nci.caarray.ui.biomaterial.
BiosourceDetailAction
gov.nih.nci.caarray.ui.biomaterial.
BiosourceSearchAction
gov.nih.nci.caarray.ui.experiment.
ExperimentAddAdditionalHybPageAction
gov.nih.nci.caarray.ui.experiment.
ExperimentAddHybPageAction
gov.nih.nci.caarray.ui.experiment.
ExperimentBatchDownloadAction
gov.nih.nci.caarray.ui.experiment.
ExperimentHybridizationAction
gov.nih.nci.caarray.ui.experiment.
ExperimentHybridizationAnnotationAction
gov.nih.nci.caarray.ui.experiment.
ExperimentHybridizationDetailDoneAction
gov.nih.nci.caarray.ui.protocol.
HardwareAddUpdateAction
gov.nih.nci.caarray.ui.protocol.
HardwareDetailAction
gov.nih.nci.caarray.ui.protocol.
HardwareSearchAction
gov.nih.nci.caarray.ui.experiment.
HybridizationFileProcessAction
gov.nih.nci.caarray.ui.experiment.
HybridizationFileUploadAction
gov.nih.nci.caarray.ui.biomaterial.
LabelAddUpdateAction
gov.nih.nci.caarray.ui.biomaterial.
LabeledExtractDetailAction
gov.nih.nci.caarray.ui.biomaterial.
LabeledExtractSearchAction
gov.nih.nci.caarray.ui.experiment.
ModifyExperimentAdditionalQualifierAction
gov.nih.nci.caarray.ui.experiment.
ModifyExperimentContactAction
gov.nih.nci.caarray.ui.experiment.
ModifyExperimentDetailAction
gov.nih.nci.caarray.ui.experiment.
ModifyExperimentFactorAction
gov.nih.nci.caarray.ui.experiment.
ModifyExperimentGeneralInfoAction
gov.nih.nci.caarray.ui.experiment.
ModifyExperimentPublicationAction
gov.nih.nci.caarray.ui.experiment.
ModifyExperimentQualityAction
gov.nih.nci.caarray.ui.protocol.
ModifyProtocolApplicationAction
gov.nih.nci.caarray.ui.biomaterial.
ModifyTreatmentAction
gov.nih.nci.caarray.ui.ontology.
OntologyAddUpdateAction
gov.nih.nci.caarray.ui.ontology.
OntologyDetailAction
gov.nih.nci.caarray.ui.ontology.
OntologySearchAction
gov.nih.nci.caarray.ui.contact.
OrganizationAddUpdateAction
gov.nih.nci.caarray.ui.contact.
OrganizationDetailAction
gov.nih.nci.caarray.ui.contact.
OrganizationSearchAction
gov.nih.nci.caarray.ui.protocol.
ParameterAddAction
gov.nih.nci.caarray.ui.contact.
PeopleSearchAction
gov.nih.nci.caarray.ui.experiment.
PerformExperimentAdditionalUploadFileAction
gov.nih.nci.caarray.ui.experiment.
PerformExperimentAddPublicationAction
gov.nih.nci.caarray.ui.experiment.
PerformExperimentDataProcessingAction
gov.nih.nci.caarray.ui.experiment.
PerformExperimentImportMageMLAction
gov.nih.nci.caarray.ui.experiment.
PerformExperimentNewAdditionalQualifierAction
gov.nih.nci.caarray.ui.experiment.
PerformExperimentNewPageContinueAction
gov.nih.nci.caarray.ui.experiment.
PerformExperimentUploadHybridizationAction
gov.nih.nci.caarray.ui.contact.
PersonAddUpdateAction
gov.nih.nci.caarray.ui.contact.
PersonDetailAction
gov.nih.nci.caarray.ui.biomaterial.
PoolAction
gov.nih.nci.caarray.ui.protocol.
ProtocolActionMappingsAction
gov.nih.nci.caarray.ui.protocol.
ProtocolAddUpdateAction
gov.nih.nci.caarray.ui.protocol.
ProtocolApplicationAction
gov.nih.nci.caarray.ui.protocol.
ProtocolDetailAction
gov.nih.nci.caarray.ui.protocol.
ProtocolSearchAction
gov.nih.nci.caarray.ui.biomaterial.
SampleDetailAction
gov.nih.nci.caarray.ui.biomaterial.
SampleSearchAction
gov.nih.nci.caarray.ui.biomaterial.
SampleUpdateAction
gov.nih.nci.caarray.ui.protocol.
SoftwareAddUpdateAction
gov.nih.nci.caarray.ui.protocol.
SoftwareDetailAction
gov.nih.nci.caarray.ui.protocol.
SoftwareSearchAction
gov.nih.nci.caarray.ui.biomaterial.
SplitAction
gov.nih.nci.caarray.ui.biomaterial.
TreatmentActionOne
gov.nih.nci.caarray.ui.biomaterial.
TreatmentActionThree
gov.nih.nci.caarray.ui.biomaterial.
TreatmentActionTwo
gov.nih.nci.caarray.ui.useradmin.
UserManagementAction
gov.nih.nci.caarray.ui.useradmin.
GroupAddUpdateAction
gov.nih.nci.caarray.ui.useradmin.
GroupDetailAction
gov.nih.nci.caarray.ui.useradmin.
GroupSearchAction
gov.nih.nci.caarray.ui.useradmin.
UserAddUpdateAction
gov.nih.nci.caarray.ui.useradmin.
UserDetailAction
gov.nih.nci.caarray.ui.useradmin.
UserGroupAddUpdateAction
gov.nih.nci.caarray.ui.useradmin.
UserSearchAction
gov.nih.nci.caarray.ui.core.
TilesController
(implements org.apache.struts.tiles.Controller)
gov.nih.nci.caarray.services.util.ojb.conversions.
Action2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
org.apache.struts.action.ActionForm (implements java.io.Serializable)
gov.nih.nci.caarray.ui.arraydesign.
ArrayBaseForm
gov.nih.nci.caarray.ui.arraydesign.
ArrayAddUpdateForm
gov.nih.nci.caarray.ui.arraydesign.
ArrayCopyForm
gov.nih.nci.caarray.ui.arraydesign.
ArrayDetailForm
gov.nih.nci.caarray.ui.arraydesign.
ArraySearchForm
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignBaseForm
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignAddUpdateForm
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignDetailForm
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignSearchForm
gov.nih.nci.caarray.ui.core.
BaseForm
gov.nih.nci.caarray.ui.biomaterial.
BiomaterialBaseForm
gov.nih.nci.caarray.ui.biomaterial.
BiomaterialCharacteristicsForm
gov.nih.nci.caarray.ui.biomaterial.
BiosourceBaseForm
gov.nih.nci.caarray.ui.biomaterial.
BiosourceAddUpdateForm
gov.nih.nci.caarray.ui.biomaterial.
BiosourceDetailForm
gov.nih.nci.caarray.ui.biomaterial.
BiosourceSearchForm
gov.nih.nci.caarray.ui.biomaterial.
LabeledExtractBaseForm
gov.nih.nci.caarray.ui.biomaterial.
LabeledExtractDetailForm
gov.nih.nci.caarray.ui.biomaterial.
LabeledExtractSearchForm
gov.nih.nci.caarray.ui.biomaterial.
PoolForm
gov.nih.nci.caarray.ui.biomaterial.
SplitForm
gov.nih.nci.caarray.ui.biomaterial.
SampleBaseForm
gov.nih.nci.caarray.ui.experiment.
ExperimentBaseForm
gov.nih.nci.caarray.ui.experiment.
ExperimentDetailForm
gov.nih.nci.caarray.ui.experiment.
ExperimentSearchForm
gov.nih.nci.caarray.ui.experiment.
HybridizationFileUploadForm
gov.nih.nci.caarray.ui.useradmin.
GroupAddUpdateForm
gov.nih.nci.caarray.ui.useradmin.
GroupDetailForm
gov.nih.nci.caarray.ui.useradmin.
GroupSearchForm
gov.nih.nci.caarray.ui.protocol.
HardwareBaseForm
gov.nih.nci.caarray.ui.protocol.
HardwareAddUpdateForm
gov.nih.nci.caarray.ui.protocol.
HardwareDetailForm
gov.nih.nci.caarray.ui.protocol.
HardwareSearchForm
gov.nih.nci.caarray.ui.experiment.
HybridizationAnnotationForm
gov.nih.nci.caarray.ui.experiment.
HybridizationAnnotationMiniForm
gov.nih.nci.caarray.ui.experiment.
HybridizationDetailForm
gov.nih.nci.caarray.ui.login.
LoginForm
gov.nih.nci.caarray.ui.ontology.
OntologyActionForm
gov.nih.nci.caarray.ui.ontology.
OntologyStrainLineActionForm
gov.nih.nci.caarray.ui.contact.
OrganizationAddUpdateForm
gov.nih.nci.caarray.ui.contact.
OrganizationSearchForm
gov.nih.nci.caarray.ui.protocol.
ParameterAddForm
gov.nih.nci.caarray.ui.contact.
PeopleSearchForm
gov.nih.nci.caarray.ui.contact.
PersonAddUpdateForm
gov.nih.nci.caarray.ui.contact.
PersonDetailForm
gov.nih.nci.caarray.ui.contact.
OrganizationDetailForm
gov.nih.nci.caarray.ui.protocol.
ProtocolApplicationForm
gov.nih.nci.caarray.ui.protocol.
ProtocolBaseForm
gov.nih.nci.caarray.ui.protocol.
ProtocolActionMappingsForm
gov.nih.nci.caarray.ui.protocol.
ProtocolAddUpdateForm
gov.nih.nci.caarray.ui.protocol.
ProtocolDetailForm
gov.nih.nci.caarray.ui.protocol.
ProtocolSearchForm
gov.nih.nci.caarray.ui.login.
RegisterForm
gov.nih.nci.caarray.ui.biomaterial.
SampleDetailForm
gov.nih.nci.caarray.ui.biomaterial.
SampleSearchForm
gov.nih.nci.caarray.ui.biomaterial.
SampleUpdateForm
gov.nih.nci.caarray.ui.protocol.
SoftwareBaseForm
gov.nih.nci.caarray.ui.protocol.
SoftwareAddUpdateForm
gov.nih.nci.caarray.ui.protocol.
SoftwareDetailForm
gov.nih.nci.caarray.ui.protocol.
SoftwareSearchForm
gov.nih.nci.caarray.ui.biomaterial.
TreatmentFormOne
gov.nih.nci.caarray.ui.biomaterial.
TreatmentFormThree
gov.nih.nci.caarray.ui.biomaterial.
TreatmentFormTwo
gov.nih.nci.caarray.ui.biomaterial.
TreatmentModifyForm
gov.nih.nci.caarray.ui.useradmin.
UserAddUpdateForm
gov.nih.nci.caarray.ui.useradmin.
UserDetailForm
gov.nih.nci.caarray.ui.useradmin.
UserGroupAddUpdateForm
gov.nih.nci.caarray.ui.useradmin.
UserSearchForm
org.biomage.BioMaterial.
ActionProtocolTypeMap
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.biomaterial.
ActionProtocolTypeMapData
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.core.
ActionUtils
org.biomage.Experiment.
AdditionalDataProcessing
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
AdditionalDataProcessingData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
AdditionalQualifierData
(implements java.io.Serializable)
org.biomage.Experiment.
AdditionalUploadedFile
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
AdditionalUploadedFileData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.useradmin.
AdminData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.useradmin.
GroupData
gov.nih.nci.caarray.common.data.useradmin.
UserGroupData
gov.nih.nci.caarray.common.data.useradmin.
UserData
gov.nih.nci.caarray.common.data.useradmin.
UserRoleData
gov.nih.nci.caarray.common.delegate.
AdminManagerDelegate
gov.nih.nci.caarray.services.useradmin.
AdminUtils
gov.nih.nci.caarray.services.arraydesign.loader.affymetrix.
AffymetrixArrayDesignLoader
gov.nih.nci.caarray.services.arraydesign.
AffymetrixCdfLocatorUtil
gov.nih.nci.caarray.services.arraydesign.loader.agilent.
AgilentTxtArrayDesignLoader
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
AppletValidatorCodeGenerator
org.biomage.Array.
Array_package
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.array.
ArrayConstants
gov.nih.nci.caarray.common.data.array.
ArrayData
(implements java.io.Serializable)
org.biomage.ArrayDesign.
ArrayDesign_package
(implements java.io.Serializable)
gov.nih.nci.caarray.services.arraydesign.loader.
ArrayDesignCleaner
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignConstants
gov.nih.nci.caarray.common.data.arraydesign.
ArrayDesignData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.arraydesign.
ArrayDesignView
gov.nih.nci.caarray.common.data.arraydesign.
ArrayDesignDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.services.arraydesign.loader.handler.
ArrayDesignFileHandlerFactory
gov.nih.nci.caarray.services.fileparse2.mdb.
ArrayDesignFileParserMDB
(implements javax.ejb.MessageDrivenBean, javax.jms.MessageListener)
gov.nih.nci.caarray.services.arraydesign.loader.
ArrayDesignFileParsingJob
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.
ArrayDesignFileParsingService
gov.nih.nci.caarray.services.mageloader.test.
ArrayDesignFixer
gov.nih.nci.caarray.loader.
ArrayDesignLoaderClient
gov.nih.nci.caarray.common.delegate.
ArrayDesignManagerDelegate
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignManagerFactory
gov.nih.nci.caarray.services.arraydesign.loader.
ArrayDesignSaver
gov.nih.nci.caarray.services.fileupload.
ArrayDesignUploadDelegate
gov.nih.nci.caarray.common.data.fileupload2.
ArrayDesignUploadedFileData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse.mdb.
ArrayDesignUploadManagerMDB
(implements javax.ejb.MessageDrivenBean, javax.jms.MessageListener)
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignUtils
gov.nih.nci.caarray.ui.arraydesign.
ArrayDesignUtils
gov.nih.nci.caarray.services.fileupload.
ArrayDesignValues
(implements gov.nih.nci.caarray.services.fileparse.
FileMessageInterface
, java.io.Serializable)
org.biomage.Array.
ArrayGroup.OrientationMarkPosition
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.array.
ArrayGroupData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.array.
ArrayGroupDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.common.delegate.
ArrayManagerDelegate
gov.nih.nci.caarray.services.array.
ArrayUtils
gov.nih.nci.caarray.ui.arraydesign.
ArrayUtils
gov.nih.nci.caarray.services.util.dataconverter.assembler.
AssemblerFactory
gov.nih.nci.caarray.services.util.dataconverter.assembler.
BibliographicReferenceAssembler
gov.nih.nci.caarray.services.util.dataconverter.assembler.
DefaultAssembler
gov.nih.nci.caarray.services.util.dataconverter.assembler.
ExperimentAssembler
gov.nih.nci.caarray.services.util.dataconverter.assembler.
HybridizationFileUploadAssembler
gov.nih.nci.caarray.services.util.dataconverter.assembler.
HybridizationFileUploadEntryAssembler
gov.nih.nci.caarray.services.util.dataconverter.assembler.
MeasuredBioAssayAssembler
gov.nih.nci.caarray.services.util.dataconverter.assembler.
TreatmentAssembler
junit.framework.Assert
junit.framework.TestCase (implements junit.framework.Test)
gov.nih.nci.caarray.services.biomaterial.test.
AddBioSampleTest
gov.nih.nci.caarray.services.biomaterial.test.
AddBioSourceTest
gov.nih.nci.caarray.services.useradmin.test.
AdminManagementTest
gov.nih.nci.caarray.services.arraydesign.test.
ArrayDesignManagementTest
gov.nih.nci.caarray.services.array.test.
ArrayGroupManagementTest
gov.nih.nci.caarray.ui.test.
BaseHttpUnitTest
gov.nih.nci.caarray.ui.test.
ExperimentSearchTest
gov.nih.nci.caarray.services.fileparse2.parsers.test.
BeanConversionTest
gov.nih.nci.caarray.services.biomaterial.test.
BioSampleManagementTest
gov.nih.nci.caarray.services.biomaterial.test.
BioSourceManagementTest
gov.nih.nci.caarray.services.contact.test.
ContactManagementTest
gov.nih.nci.caarray.services.biomaterial.test.
DeleteTreatmentFromBioMaterial
gov.nih.nci.caarray.services.biomaterial.test.
DuplicateBioSourceTest
gov.nih.nci.caarray.services.experiment.test.
ExperimentManagementTest
gov.nih.nci.caarray.services.biomaterial.test.
GetTreatmentTest
gov.nih.nci.caarray.services.biomaterial.test.
LabeledExtractManagementTest
gov.nih.nci.caarray.services.fileparse2.parsers.test.
ParsingTest
gov.nih.nci.caarray.services.protocol.test.
ProtocolManagerAddTest
gov.nih.nci.caarray.services.protocol.test.
ProtocolManagerGetTest
gov.nih.nci.caarray.services.protocol.test.
ProtocolManagerParameterAddTest
gov.nih.nci.caarray.services.protocol.test.
ProtocolManagerUpdateTest
gov.nih.nci.caarray.services.security.test.
SecurityTester
gov.nih.nci.caarray.services.protocol.test.
SoftwareManagerAddTest
gov.nih.nci.caarray.services.protocol.test.
SoftwareManagerGetTest
gov.nih.nci.caarray.services.protocol.test.
SoftwareManagerUpdateTest
gov.nih.nci.caarray.services.util.dataconverter.test.
TestArrayDesignConversion
gov.nih.nci.caarray.services.util.dataconverter.test.
TestBioMaterialConversion
gov.nih.nci.caarray.services.util.dataconverter.test.
TestDataConverter
gov.nih.nci.caarray.services.util.dataconverter.test.
TestExperimentConversion
gov.nih.nci.caarray.services.util.dataconverter.test.
TestParameterConversion
gov.nih.nci.caarray.services.util.dataconverter.test.
TestProtocolConversion
gov.nih.nci.caarray.services.util.dataconverter.test.
TestTreatmentConversion
gov.nih.nci.caarray.services.util.dataconverter.test.
TestVocabConversion
gov.nih.nci.caarray.services.biomaterial.test.
UpdateBioSourceCharacteristicsTest
gov.nih.nci.caarray.services.biomaterial.test.
UpdateTreatmentTest
gov.nih.nci.caarray.services.vocab.test.
VocabManagerAddTest
gov.nih.nci.caarray.services.vocab.test.
VocabManagerDeleteTest
gov.nih.nci.caarray.services.vocab.test.
VocabManagerGetTest
gov.nih.nci.caarray.services.vocab.test.
VocabManagerUpdateTest
org.biomage.AuditAndSecurity.
Audit.Action
(implements java.io.Serializable)
org.biomage.AuditAndSecurity.
AuditAndSecurity_package
(implements java.io.Serializable)
gov.nih.nci.caarray.services.test.
BaseInContainerTest
(implements gov.nih.nci.caarray.services.test.
InContainerTest
)
gov.nih.nci.caarray.services.security.test.
GeneralSecuredElementUpdateTester
(implements gov.nih.nci.caarray.services.test.
InContainerTest
)
gov.nih.nci.caarray.services.fileparse2.parsers.
BaseMicroarrayFileHeaderParser
gov.nih.nci.caarray.services.fileparse2.arraydesign.
ArrayDesignFileHeaderParser
(implements gov.nih.nci.caarray.services.fileparse2.arraydesign.
ArrayDesignFileHeaderParserItf
)
gov.nih.nci.caarray.services.fileparse2.parsers.
MicroarrayTextFileHeaderParser
gov.nih.nci.caarray.services.fileparse2.arraydesign.
ArrayDesignTextFileHeaderParser
(implements gov.nih.nci.caarray.services.fileparse2.arraydesign.
ArrayDesignFileHeaderParserItf
)
gov.nih.nci.caarray.services.fileparse2.arraydesign.
GenePixGALFileHeaderParser
gov.nih.nci.caarray.services.fileparse2.arraydesign.
UCSFSpotFileHeaderParser
gov.nih.nci.caarray.services.fileparse2.parsers.
BaseMicroarrayFileParser
gov.nih.nci.caarray.services.fileparse2.hybridization.
AffyCelFileParser
gov.nih.nci.caarray.services.fileparse2.hybridization.
AffyChpFileParser
gov.nih.nci.caarray.services.fileparse2.parsers.
MicroarrayDelimitedFileParser
gov.nih.nci.caarray.services.fileparse2.parsers.
ArrayDesignDelimitedFileParser
gov.nih.nci.caarray.services.fileparse2.parsers.
HybridizationDelimitedFileParser
gov.nih.nci.caarray.common.data.util.
BaseSearchCriteria
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.arraydesign.
ArrayDesignSearchCriteria
gov.nih.nci.caarray.common.data.array.
ArraySearchCriteria
gov.nih.nci.caarray.common.data.biomaterial.
BioMaterialSearchCriteria
gov.nih.nci.caarray.common.data.arraydesign.
CompositeGroupSearchCriteria
gov.nih.nci.caarray.common.data.experiment.
ExperimentSearchCriteria
gov.nih.nci.caarray.common.data.arraydesign.
FeatureGroupSearchCriteria
gov.nih.nci.caarray.common.data.fileupload2.
FileUploadHistorySearchCriteria
gov.nih.nci.caarray.common.data.useradmin.
GroupSearchCriteria
gov.nih.nci.caarray.common.data.protocol.
HardwareSearchCriteria
gov.nih.nci.caarray.common.data.fileupload2.
MAGEMLFileUploadSearchCriteria
gov.nih.nci.caarray.common.data.contact.
OrganizationSearchCriteria
gov.nih.nci.caarray.common.data.contact.
PersonSearchCriteria
gov.nih.nci.caarray.common.data.protocol.
ProtocolSearchCriteria
gov.nih.nci.caarray.common.data.arraydesign.
ReporterGroupSearchCriteria
gov.nih.nci.caarray.common.data.protocol.
SoftwareSearchCriteria
gov.nih.nci.caarray.common.data.useradmin.
UserSearchCriteria
gov.nih.nci.caarray.common.data.vocab.
VocabSearchCriteria
gov.nih.nci.caarray.services.util.
BaseSecuredElement
(implements gov.nih.nci.caarray.services.security.intf.
SecuredElementItf
, java.io.Serializable)
org.apache.commons.beanutils.BasicDynaBean (implements org.apache.commons.beanutils.DynaBean, java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.parsers.
LocalDynaBeanImpl
(implements gov.nih.nci.caarray.services.fileparse2.parsers.
LocalDynaBean
)
gov.nih.nci.caarray.services.util.parse.
LocalDynaBeanImpl
(implements gov.nih.nci.caarray.services.util.parse.
LocalDynaBean
)
gov.nih.nci.caarray.services.util.ojb.conversions.
Basis2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
gov.nih.nci.caarray.services.fileparse2.
BeanProvider
org.biomage.BioAssay.
BioAssay_package
(implements java.io.Serializable)
org.biomage.BioAssayData.
BioAssayData_package
(implements java.io.Serializable)
gov.nih.nci.caarray.services.bioassaydata.
BioAssayDataInfo
(implements java.io.Serializable)
gov.nih.nci.caarray.services.bioassaydata.
BioAssayDataLoaderFactory
gov.nih.nci.caarray.services.fileparse.
BioAssayService
org.biomage.BioAssayData.
BioDataCube.Order
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.hybridization.
BioDataCubeCreator
org.biomage.BioEvent.
BioEvent_package
(implements java.io.Serializable)
org.biomage.BioMaterial.
BioMaterial_package
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.biomaterial.
BiomaterialConstants
gov.nih.nci.caarray.common.data.biomaterial.
BioMaterialData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.biomaterial.
BioMaterialView
gov.nih.nci.caarray.common.data.biomaterial.
BioSampleView
gov.nih.nci.caarray.common.data.biomaterial.
BioSourceView
gov.nih.nci.caarray.common.data.biomaterial.
LabeledExtractView
gov.nih.nci.caarray.common.data.biomaterial.
BioSampleData
gov.nih.nci.caarray.common.data.biomaterial.
SplitBioSampleData
gov.nih.nci.caarray.common.data.biomaterial.
BioSourceData
gov.nih.nci.caarray.common.data.biomaterial.
LabeledExtractData
gov.nih.nci.caarray.common.data.biomaterial.
BioMaterialDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.biomaterial.
BioSampleDesc
gov.nih.nci.caarray.common.data.biomaterial.
BioSourceDesc
gov.nih.nci.caarray.common.data.biomaterial.
LabeledExtractDesc
gov.nih.nci.caarray.common.delegate.
BioMaterialManagerDelegate
gov.nih.nci.caarray.ui.biomaterial.
BioMaterialUIUtils
gov.nih.nci.caarray.services.biomaterial.
BioMaterialUtils
gov.nih.nci.caarray.ui.core.
BioSampleComparator
(implements java.util.Comparator<T>)
org.biomage.BioSequence.
BioSequence_package
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.ojb.conversions.
Boolean2IntFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
org.biomage.BQS.
BQS_package
(implements java.io.Serializable)
gov.nih.nci.caarray.services.arraydesign.
CaArrayArrayDesignSecurityHelper
(implements gov.nih.nci.caarray.services.arraydesign.
ArrayDesignSecurityHelper
)
gov.nih.nci.caarray.services.util.cache.
CaArrayCache
gov.nih.nci.caarray.services.util.cache.
CaArrayCache2
gov.nih.nci.caarray.services.security.
CaarrayCallBackHandler
(implements javax.security.auth.callback.CallbackHandler)
gov.nih.nci.caarray.common.util.
CaArrayConstants
gov.nih.nci.caarray.services.fileupload2.
CAArrayDesignFileUploadEntry
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.fileupload2.
CAArrayDesignFileUploadEntryData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.security.
CaArrayPrincipal
(implements java.security.Principal, java.io.Serializable)
gov.nih.nci.caarray.services.util.properties.
CaArrayProperties
gov.nih.nci.caarray.services.fileparse.
CaArrayToMageConversion
gov.nih.nci.caarray.services.util.transaction.
CaArrayTransactionHandler
(implements gov.nih.nci.caarray.services.util.transaction.
TransactionHandler
)
gov.nih.nci.caarray.services.fileupload2.
CAFileUploadEntry
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.fileupload2.
CAFileUploadEntryData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileupload2.
CAFileUploadHistory
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.fileupload2.
CAFileUploadHistoryData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileupload2.
CAMagemlFileUploadEntry
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.fileupload2.
CAMagemlFileUploadEntryData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.delegate.
CaSecurityManagerDelegate
gov.nih.nci.caarray.services.security.
CaSecurityManagerHelper
gov.nih.nci.caarray.services.fileparse2.arraydesign.
ClassGenerator
java.lang.ClassLoader
java.security.SecureClassLoader
gov.nih.nci.caarray.services.fileparse2.arraydesign.
ClassGenerator.DirectLoader
gov.nih.nci.caarray.services.fileparse2.arraydesign.test.
TimeCalls.DirectLoader
gov.nih.nci.caarray.services.util.dataconverter.mapper.
ClassMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.
ClassMapperRepository
gov.nih.nci.caarray.services.util.dataconverter.mapper.
ClassMapperRepository.ConvertField
gov.nih.nci.caarray.services.util.dataconverter.mapper.
ClassMapperRepository.DTOClass
gov.nih.nci.caarray.services.util.dataconverter.mapper.
ClassMapperRepository.TargetClass
org.apache.struts.upload.CommonsMultipartRequestHandler (implements org.apache.struts.upload.MultipartRequestHandler)
gov.nih.nci.caarray.ui.core.
CustomMultipartRequestHandler
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.JPanel (implements javax.accessibility.Accessible)
org.biomage.tools.apps.annot.
PagePanel
org.biomage.tools.apps.annot.pages.
ArrayPage
org.biomage.tools.apps.annot.pages.
Contact
java.awt.Panel (implements javax.accessibility.Accessible)
java.applet.Applet
javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
HttpFileUploadApplet
(implements java.awt.event.ActionListener, java.awt.event.ItemListener)
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
ProcessDuplicatedFileName
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
HttpFileUploadApplet.HelpFrame
(implements java.awt.event.ActionListener)
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
HttpFileUploadApplet.ResultFrame
(implements java.awt.event.ActionListener)
org.biomage.tools.apps.annot.
MageXMLConverter
gov.nih.nci.caarray.ui.experiment.
UploadApplet
(implements java.awt.event.ActionListener, java.awt.event.ItemListener)
gov.nih.nci.caarray.common.data.arraydesign.
CompositeGroupData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.arraydesign.
CompositeGroupDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.designelement.
CompositeSequenceData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.designelement.
CompositeSequenceDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.properties.
CompoundAttrsProperties
gov.nih.nci.caarray.common.data.biomaterial.
CompoundMeasurementData
(implements java.io.Serializable)
org.biomage.Measurement.
ConcentrationUnit.UnitNameCV
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.contact.
ContactData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.contact.
OrganizationData
(implements java.lang.Comparable<T>)
gov.nih.nci.caarray.common.data.contact.
PersonData
gov.nih.nci.caarray.common.delegate.
ContactManagerDelegate
gov.nih.nci.caarray.services.contact.
ContactUtils
org.biomage.tools.generate_cpp.
CreateCPPFile
org.biomage.tools.generate_cpp.
CreateCPPFile.specificWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.ClassDeclWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.ConstructorBodyWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.AssignmentWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.ConstructorWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.DataMemberWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.EquivalenceWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.GetAndSetWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.ImportWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.IncludeWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.RemoveFromWriter
org.biomage.tools.generate_cpp.
CreateCPPFile.TemplateWriter
org.biomage.tools.generate_doc.
CreateDocFile
org.biomage.tools.generate_classes.
CreateFile
org.biomage.tools.generate_classes.
CreateClassFile
org.biomage.tools.generate_java.
CreateTransformedClassFile
org.biomage.tools.generate_classes.
CreateInterfaceFile
org.biomage.tools.generate_classes.
CreateMAGEFile
org.biomage.tools.generate_classes.
CreatePackageFile
org.biomage.tools.generate_java.
CreateTransformedInterfaceFile
org.biomage.tools.generate_classes.
CreateFile.AttrInformation
org.biomage.tools.generate_classes.
CreateClassFile.DataTypeAttrInformation
org.biomage.tools.generate_classes.
CreateClassFile.MethodInformation
org.biomage.tools.generate_classes.
CreateClassFile.MethodInformation.ParamInfo
org.biomage.tools.generate_classes.
CreateFile.AssociationAttrInformation
org.biomage.tools.generate_classes.
CreateFile.IdentifierAttrInformation
org.biomage.tools.generate_classes.
CreateFile.RoleInformation
org.biomage.tools.generate_java.
CreateJavaClasses
org.biomage.tools.generate_java.
CreateJavaFile
org.biomage.tools.generate_java.
CreateJavaClassFile
org.biomage.tools.generate_java.
CreateJavaMAGEFile
org.biomage.tools.generate_java.
CreateJavaPackageFile
org.biomage.tools.generate_java.
CreateJavaFile.rankComparator
(implements java.util.Comparator<T>)
org.biomage.tools.generate_java.
CreateJavaFile.WriteAttrInformation
org.biomage.tools.generate_java.
CreateJavaClassFile.WriteDataAttrInformation
org.biomage.tools.generate_java.
CreateJavaFile.WriteAssociationAttrInformation
org.biomage.tools.generate_java.
CreateJavaFile.WriteRoleInformation
org.biomage.tools.generate_classes.
CreateMageClassFileList
org.biomage.tools.generate_classes.
CreateMageClassFileList.AssociationInformation
org.biomage.tools.generate_classes.
CreateMageClassFileList.ExtendedAssociation
org.biomage.tools.generate_classes.
CreateMageClassFileList.ExtensionMechanisms
org.biomage.tools.generate_classes.
CreateMageClassFileList.PackageInformation
org.biomage.tools.generate_classes.
CreateMageDTDClasses
org.biomage.tools.generate_classes.
CreateMageClasses
org.biomage.tools.generate_er.
CreateMageER
gov.nih.nci.caarray.services.fileparse.
CubeCreator
gov.nih.nci.caarray.ui.core.
CustomCommonsFormFile
(implements gov.nih.nci.caarray.ui.core.
CustomFormFile
)
gov.nih.nci.caarray.services.mageloader.
CustomDataCubeIOHelpers
gov.nih.nci.caarray.ui.core.
DatabaseComparator
(implements java.util.Comparator<T>)
gov.nih.nci.caarray.common.data.vocab.
DatabaseData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.mageloader.
DatabaseImportMAGEReader
org.biomage.tools.generate_er.
DataColumn
org.biomage.tools.generate_er.
AssociationColumn
gov.nih.nci.caarray.services.util.dataconverter.
DataConverter
gov.nih.nci.caarray.services.hybridization.ejb.
DataFileAssessment
(implements java.io.Serializable)
gov.nih.nci.caarray.loader.
DataFileLoaderClient
gov.nih.nci.caarray.services.fileparse.
DataFileProcessorFactory
gov.nih.nci.caarray.services.hybridization.ejb.
DataFileReloadConfiguration
(implements java.io.Serializable)
gov.nih.nci.caarray.services.hybridization.ejb.
DataFileReloadResults
(implements java.io.Serializable)
gov.nih.nci.caarray.services.hybridization.ejb.
DataFileRepairResults
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.parsers.
DataHeaderMap
gov.nih.nci.caarray.services.fileupload2.
DataJobHandlerImpl
gov.nih.nci.caarray.services.fileupload2.
ArrayDesignFileParsingJobHandlerImpl
gov.nih.nci.caarray.services.fileupload2.
HybridizationDataJobHandlerImpl
gov.nih.nci.caarray.services.fileparse2.hybridization.
DataMatrix
gov.nih.nci.caarray.services.fileparse2.parsers.
DataSet
gov.nih.nci.caarray.services.fileparse2.parsers.
DataSetMapper
gov.nih.nci.caarray.services.fileparse2.parsers.
ArrayDesignDataSetMapper
gov.nih.nci.caarray.services.fileparse2.util.
DataSetMapperMap
gov.nih.nci.caarray.services.fileparse2.parsers.
DataTable
gov.nih.nci.caarray.services.fileparse2.parsers.
DataTableMap
gov.nih.nci.caarray.services.fileparse2.parsers.
ArrayDesignDataTableMap
gov.nih.nci.caarray.services.fileparse2.parsers.
HybridizationDataTableMap
gov.nih.nci.caarray.services.arraydesign.
DbArrayDesignDataSource
(implements gov.nih.nci.caarray.services.arraydesign.
ArrayDesignDataSource
)
org.biomage.tools.helpers.
DbConnectionBroker
(implements java.lang.Runnable)
gov.nih.nci.caarray.services.hybridization.
DbFileUploadEntrySaver
(implements gov.nih.nci.caarray.services.hybridization.
FileUploadEntrySaver
)
gov.nih.nci.caarray.services.util.
DBUtils
org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
gov.nih.nci.caarray.services.mageloader.
DatabaseImportMAGEContentHandler
org.biomage.tools.xmlutils.
MAGEContentHandler
gov.nih.nci.caarray.services.util.mage.
CustomMAGEContentHandler
gov.nih.nci.caarray.services.util.jms.
DefaultJMSMessageHandler
(implements gov.nih.nci.caarray.services.util.jms.
JMSMessageHandler
)
gov.nih.nci.caarray.services.security.mageom.
DefaultSecuredElementIdUpdater
(implements gov.nih.nci.caarray.services.security.mageom.
SecuredElementIdUpdater
)
gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers.
DefaultZoneMatcher
(implements gov.nih.nci.caarray.services.fileparse2.arraydesign.
ZoneMatcher
)
gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers.
GenePixGALZoneMatcher
gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers.
UCSFSpotZoneMatcher
gov.nih.nci.caarray.services.util.parse.
DelimitedExporter
gov.nih.nci.caarray.services.fileparse2.parsers.
DelimitedFileReader
gov.nih.nci.caarray.services.fileparse2.parsers.
DelimitedFileWriter
gov.nih.nci.caarray.services.util.parse.
DelimitedImportDefaultListener
(implements gov.nih.nci.caarray.services.util.parse.
DelimitedImportListener
)
gov.nih.nci.caarray.services.util.parse.
DelimitedImportParser
org.biomage.Description.
Description_package
(implements java.io.Serializable)
org.biomage.DesignElement.
DesignElement_package
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.parsers.
DesignElementColumnsMap
gov.nih.nci.caarray.services.bioassaydata.
DesignElementDimensionCreator
gov.nih.nci.caarray.services.fileparse2.hybridization.
DesignElementFinder
gov.nih.nci.caarray.services.arraydesign.
DesignElementRetrievalSettings
gov.nih.nci.caarray.services.arraydesign.
DesignElementRetrievalSettings.AttributeInfo
gov.nih.nci.caarray.services.fileparse.
DesignElementServiceFactory
org.biomage.ArrayDesign.
DesignProviderRole
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.arraydesign.
DesignProviderRoleData
(implements java.io.Serializable)
java.util.Dictionary<K,V>
java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
org.biomage.tools.xmlutils.
MultiHashtable
(implements org.biomage.tools.xmlutils.
MultiMap
)
org.biomage.Measurement.
DistanceUnit.UnitNameCV
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.cache.
EHCacheHelper
gov.nih.nci.caarray.services.util.
EJBUtils
org.biomage.Experiment.
Experiment_package
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
ExperimentalFactorData
(implements java.io.Serializable)
gov.nih.nci.caarray.loader.
ExperimentCleanerClient
gov.nih.nci.caarray.services.experiment.ejb.
ExperimentCleaningConfiguration
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
ExperimentData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
ExperimentView
gov.nih.nci.caarray.services.experiment.ejb.
ExperimentDeletionResult
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
ExperimentDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
ExperimentShortDesc
gov.nih.nci.caarray.common.data.experiment.
ExperimentFileTypeConstants
gov.nih.nci.caarray.common.data.experiment.
ExperimentFtpData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.delegate.
ExperimentManagerDelegate
gov.nih.nci.caarray.ui.experiment.
ExperimentNewDataObject
org.biomage.Experiment.
ExperimentProviderRole
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
ExperimentProviderRoleData
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.experiment.data.
ExperimentUIConstants
gov.nih.nci.caarray.services.experiment.
ExperimentUtils
gov.nih.nci.caarray.ui.experiment.
ExperimentUtils
gov.nih.nci.caarray.ui.experiment.data.
ExperimentValidationUtil
org.biomage.Common.
Extendable
(implements org.biomage.Interface.
HasPropertySets
, gov.nih.nci.caarray.services.security.intf.
SecuredElementItf
, java.io.Serializable)
org.biomage.Array.
ArrayManufactureDeviation
(implements org.biomage.Interface.
HasAdjustments
, org.biomage.Interface.
HasFeatureDefects
, java.io.Serializable)
org.biomage.BioAssayData.
BioAssayMapping
(implements org.biomage.Interface.
HasBioAssayMaps
, java.io.Serializable)
org.biomage.BioAssayData.
BioAssayTuple
(implements org.biomage.Interface.
HasDesignElementTuples
, java.io.Serializable)
org.biomage.BioAssayData.
BioDataValues
(implements java.io.Serializable)
org.biomage.BioAssayData.
BioDataCube
(implements java.io.Serializable)
org.biomage.BioAssayData.
BioDataTuples
(implements org.biomage.Interface.
HasBioAssayTupleData
, java.io.Serializable)
org.biomage.Description.Ontology.
BioMaterialCharacteristic
org.biomage.Description.
OntologyEntry
(implements org.biomage.Interface.
HasAssociations
, org.biomage.Interface.
HasOntologyReference
, java.io.Serializable)
org.biomage.Description.Ontology.
Age
org.biomage.Description.Ontology.
Biometrics
org.biomage.Description.Ontology.
ChromosomalAberration
org.biomage.tools.helpers.
MGEDOntologyEntry
org.biomage.tools.helpers.
MGEDOntologyClassEntry
org.biomage.tools.helpers.
MGEDOntologyPropertyEntry
org.biomage.BioMaterial.
BioMaterialMeasurement
(implements org.biomage.Interface.
HasBioMaterial
, org.biomage.Interface.
HasMeasurement
, java.io.Serializable)
org.biomage.BioMaterial.
CompoundMeasurement
(implements org.biomage.Interface.
HasCompound
, org.biomage.Interface.
HasMeasurement
, java.io.Serializable)
org.biomage.Description.
DatabaseEntry
(implements org.biomage.Interface.
HasDatabase
, org.biomage.Interface.
HasType
, java.io.Serializable)
org.biomage.tools.helpers.
MGEDOntologyEntry.OntologyDatabaseEntry
org.biomage.BioAssayData.
DataExternal
(implements java.io.Serializable)
org.biomage.BioAssayData.
DataInternal
(implements java.io.Serializable)
org.biomage.BioAssayData.
Datum
(implements java.io.Serializable)
org.biomage.Common.
Describable
(implements org.biomage.Interface.
HasAuditTrail
, org.biomage.Interface.
HasDescriptions
, org.biomage.Interface.
HasSecurity
, java.io.Serializable)
org.biomage.AuditAndSecurity.
Audit
(implements org.biomage.Interface.
HasPerformer
, java.io.Serializable)
org.biomage.BQS.
BibliographicReference
(implements org.biomage.Interface.
HasAccessions
, org.biomage.Interface.
HasParameters
, java.io.Serializable)
org.biomage.Description.
Description
(implements org.biomage.Interface.
HasAnnotations
, org.biomage.Interface.
HasBibliographicReferences
, org.biomage.Interface.
HasDatabaseReferences
, org.biomage.Interface.
HasExternalReference
, java.io.Serializable)
org.biomage.Experiment.
ExperimentDesign
(implements org.biomage.Interface.
HasExperimentalFactors
, org.biomage.Interface.
HasNormalizationDescription
, org.biomage.Interface.
HasQualityControlDescription
, org.biomage.Interface.
HasReplicateDescription
, org.biomage.Interface.
HasTopLevelBioAssays
, org.biomage.Interface.
HasTypes
, java.io.Serializable)
org.biomage.Array.
Fiducial
(implements org.biomage.Interface.
HasDistanceUnit
, org.biomage.Interface.
HasFiducialType
, org.biomage.Interface.
HasPosition
, java.io.Serializable)
org.biomage.Common.
Identifiable
(implements java.io.Serializable)
org.biomage.Array.
Array
(implements org.biomage.Interface.
HasArrayDesign
, org.biomage.Interface.
HasArrayGroup
, org.biomage.Interface.
HasArrayManufactureDeviations
, org.biomage.Interface.
HasInformation
, java.io.Serializable)
org.biomage.ArrayDesign.
ArrayDesign
(implements org.biomage.Interface.
HasCompositeGroups
, org.biomage.Interface.
HasDesignProviders
, org.biomage.Interface.
HasFeatureGroups
, org.biomage.Interface.
HasProtocolApplications
, org.biomage.Interface.
HasReporterGroups
, java.io.Serializable)
org.biomage.ArrayDesign.
PhysicalArrayDesign
(implements org.biomage.Interface.
HasSurfaceType
, org.biomage.Interface.
HasZoneGroups
, java.io.Serializable)
org.biomage.Array.
ArrayGroup
(implements org.biomage.Interface.
HasArrays
, org.biomage.Interface.
HasDistanceUnit
, org.biomage.Interface.
HasFiducials
, org.biomage.Interface.
HasSubstrateType
, java.io.Serializable)
org.biomage.Array.
ArrayManufacture
(implements org.biomage.Interface.
HasArrayManufacturers
, org.biomage.Interface.
HasArrays
, org.biomage.Interface.
HasFeatureLIMSs
, org.biomage.Interface.
HasProtocolApplications
, org.biomage.Interface.
HasQualityControlStatistics
, java.io.Serializable)
org.biomage.BioAssay.
BioAssay
(implements org.biomage.Interface.
HasBioAssayFactorValues
, org.biomage.Interface.
HasChannels
, java.io.Serializable)
org.biomage.BioAssay.
DerivedBioAssay
(implements org.biomage.Interface.
HasDerivedBioAssayData
, org.biomage.Interface.
HasDerivedBioAssayMap
, org.biomage.Interface.
HasType
, java.io.Serializable)
org.biomage.BioAssay.
MeasuredBioAssay
(implements org.biomage.Interface.
HasFeatureExtraction
, org.biomage.Interface.
HasMeasuredBioAssayData
, java.io.Serializable)
org.biomage.BioAssay.
PhysicalBioAssay
(implements org.biomage.Interface.
HasBioAssayCreation
, org.biomage.Interface.
HasBioAssayTreatments
, org.biomage.Interface.
HasPhysicalBioAssayData
, java.io.Serializable)
org.biomage.BioAssayData.
BioAssayData
(implements org.biomage.Interface.
HasBioAssayDimension
, org.biomage.Interface.
HasBioDataValues
, org.biomage.Interface.
HasDesignElementDimension
, org.biomage.Interface.
HasQuantitationTypeDimension
, org.biomage.Interface.
HasSummaryStatistics
, java.io.Serializable)
org.biomage.BioAssayData.
DerivedBioAssayData
(implements org.biomage.Interface.
HasProducerTransformation
, java.io.Serializable)
org.biomage.BioAssayData.
MeasuredBioAssayData
(implements java.io.Serializable)
org.biomage.HigherLevelAnalysis.
BioAssayDataCluster
(implements org.biomage.Interface.
HasClusterBioAssayData
, org.biomage.Interface.
HasNodes
, java.io.Serializable)
org.biomage.BioAssayData.
BioAssayDimension
(implements org.biomage.Interface.
HasBioAssays
, java.io.Serializable)
org.biomage.BioEvent.
BioEvent
(implements org.biomage.Interface.
HasProtocolApplications
, java.io.Serializable)
org.biomage.BioAssay.
BioAssayCreation
(implements org.biomage.Interface.
HasArray
, org.biomage.Interface.
HasPhysicalBioAssayTarget
, org.biomage.Interface.
HasSourceBioMaterialMeasurements
, java.io.Serializable)
org.biomage.BioAssay.
Hybridization
(implements java.io.Serializable)
org.biomage.BioAssay.
BioAssayTreatment
(implements org.biomage.Interface.
HasPhysicalBioAssay
, org.biomage.Interface.
HasTarget
, java.io.Serializable)
org.biomage.BioAssay.
ImageAcquisition
(implements org.biomage.Interface.
HasImages
, java.io.Serializable)
org.biomage.BioAssay.
FeatureExtraction
(implements org.biomage.Interface.
HasMeasuredBioAssayTarget
, org.biomage.Interface.
HasPhysicalBioAssaySource
, java.io.Serializable)
org.biomage.BioEvent.
Map
(implements java.io.Serializable)
org.biomage.BioAssayData.
BioAssayMap
(implements org.biomage.Interface.
HasBioAssayMapTarget
, org.biomage.Interface.
HasSourceBioAssays
, java.io.Serializable)
org.biomage.BioAssayData.
DesignElementMap
(implements java.io.Serializable)
org.biomage.DesignElement.
CompositeCompositeMap
(implements org.biomage.Interface.
HasCompositePositionSources
, org.biomage.Interface.
HasCompositeSequence
, java.io.Serializable)
org.biomage.DesignElement.
FeatureReporterMap
(implements org.biomage.Interface.
HasFeatureInformationSources
, org.biomage.Interface.
HasReporter
, java.io.Serializable)
org.biomage.DesignElement.
ReporterCompositeMap
(implements org.biomage.Interface.
HasCompositeSequence
, org.biomage.Interface.
HasReporterPositionSources
, java.io.Serializable)
org.biomage.BioAssayData.
QuantitationTypeMap
(implements org.biomage.Interface.
HasSourcesQuantitationType
, org.biomage.Interface.
HasTargetQuantitationType
, java.io.Serializable)
org.biomage.BioAssayData.
Transformation
(implements org.biomage.Interface.
HasBioAssayDataSources
, org.biomage.Interface.
HasBioAssayMapping
, org.biomage.Interface.
HasDerivedBioAssayDataTarget
, org.biomage.Interface.
HasDesignElementMapping
, org.biomage.Interface.
HasQuantitationTypeMapping
, java.io.Serializable)
org.biomage.BioMaterial.
Treatment
(implements org.biomage.Interface.
HasAction
, org.biomage.Interface.
HasActionMeasurement
, org.biomage.Interface.
HasCompoundMeasurements
, org.biomage.Interface.
HasSourceBioMaterialMeasurements
, java.io.Serializable)
org.biomage.BioMaterial.
BioMaterial
(implements org.biomage.Interface.
HasCharacteristics
, org.biomage.Interface.
HasMaterialType
, org.biomage.Interface.
HasQualityControlStatistics
, org.biomage.Interface.
HasTopBioMaterial
, org.biomage.Interface.
HasTreatments
, java.io.Serializable)
org.biomage.BioMaterial.
BioSample
(implements java.lang.Comparable<T>, org.biomage.Interface.
HasType
, java.io.Serializable)
org.biomage.BioMaterial.
BioSource
(implements java.lang.Comparable<T>, org.biomage.Interface.
HasSourceContact
, java.io.Serializable)
org.biomage.BioMaterial.
LabeledExtract
(implements java.lang.Comparable<T>, org.biomage.Interface.
HasLabels
, java.io.Serializable)
org.biomage.BioSequence.
BioSequence
(implements org.biomage.Interface.
HasOntologyEntries
, org.biomage.Interface.
HasPolymerType
, org.biomage.Interface.
HasSeqFeatures
, org.biomage.Interface.
HasSequenceDatabases
, org.biomage.Interface.
HasSpecies
, org.biomage.Interface.
HasType
, java.io.Serializable)
org.biomage.BioAssay.
Channel
(implements org.biomage.Interface.
HasLabels
, java.io.Serializable)
org.biomage.BioMaterial.
Compound
(implements org.biomage.Interface.
HasComponentCompounds
, org.biomage.Interface.
HasCompoundIndices
, org.biomage.Interface.
HasExternalLIMS
, java.io.Serializable)
org.biomage.AuditAndSecurity.
Contact
(implements org.biomage.Interface.
HasRoles
, java.io.Serializable)
org.biomage.AuditAndSecurity.
Organization
(implements org.biomage.Interface.
HasParent
, java.io.Serializable)
org.biomage.AuditAndSecurity.
Person
(implements org.biomage.Interface.
HasAffiliation
, java.io.Serializable)
org.biomage.AuditAndSecurity.
User
(implements java.io.Serializable)
org.biomage.Description.
Database
(implements org.biomage.Interface.
HasContacts
, java.io.Serializable)
org.biomage.DesignElement.
DesignElement
(implements org.biomage.Interface.
HasControlType
, java.io.Serializable)
org.biomage.DesignElement.
CompositeSequence
(implements org.biomage.Interface.
HasBiologicalCharacteristics
, org.biomage.Interface.
HasCompositeCompositeMaps
, org.biomage.Interface.
HasReporterCompositeMaps
, java.io.Serializable)
org.biomage.DesignElement.
Feature
(implements org.biomage.Interface.
HasControlFeatures
, org.biomage.Interface.
HasControlledFeatures
, org.biomage.Interface.
HasFeatureGroup
, org.biomage.Interface.
HasFeatureLocation
, org.biomage.Interface.
HasPosition
, org.biomage.Interface.
HasZone
, java.io.Serializable)
org.biomage.DesignElement.
Reporter
(implements org.biomage.Interface.
HasFailTypes
, org.biomage.Interface.
HasFeatureReporterMaps
, org.biomage.Interface.
HasImmobilizedCharacteristics
, org.biomage.Interface.
HasWarningType
, java.io.Serializable)
org.biomage.BioAssayData.
DesignElementDimension
(implements java.io.Serializable)
org.biomage.BioAssayData.
CompositeSequenceDimension
(implements org.biomage.Interface.
HasCompositeSequences
, java.io.Serializable)
org.biomage.BioAssayData.
FeatureDimension
(implements org.biomage.Interface.
HasContainedFeatures
, java.io.Serializable)
org.biomage.BioAssayData.
ReporterDimension
(implements org.biomage.Interface.
HasReporters
, java.io.Serializable)
org.biomage.ArrayDesign.
DesignElementGroup
(implements org.biomage.Interface.
HasSpecies
, org.biomage.Interface.
HasTypes
, java.io.Serializable)
org.biomage.ArrayDesign.
CompositeGroup
(implements org.biomage.Interface.
HasCompositeSequences
, java.io.Serializable)
org.biomage.ArrayDesign.
FeatureGroup
(implements org.biomage.Interface.
HasDistanceUnit
, org.biomage.Interface.
HasFeatures
, org.biomage.Interface.
HasFeatureShape
, org.biomage.Interface.
HasTechnologyType
, java.io.Serializable)
org.biomage.ArrayDesign.
ReporterGroup
(implements org.biomage.Interface.
HasReporters
, java.io.Serializable)
org.biomage.Experiment.
Experiment
(implements org.biomage.Interface.
HasAnalysisResults
, org.biomage.Interface.
HasBioAssayData
, org.biomage.Interface.
HasBioAssays
, org.biomage.Interface.
HasExperimentDesigns
, org.biomage.Interface.
HasProviders
, java.io.Serializable)
org.biomage.Experiment.
ExperimentalFactor
(implements org.biomage.Interface.
HasAnnotations
, org.biomage.Interface.
HasCategory
, org.biomage.Interface.
HasFactorValues
, java.io.Serializable)
org.biomage.Experiment.
FactorValue
(implements org.biomage.Interface.
HasExperimentalFactor
, org.biomage.Interface.
HasMeasurement
, org.biomage.Interface.
HasValue
, java.io.Serializable)
org.biomage.BioAssay.
Image
(implements org.biomage.Interface.
HasChannels
, org.biomage.Interface.
HasFormat
, java.io.Serializable)
org.biomage.Protocol.
Parameter
(implements org.biomage.Interface.
HasDataType
, org.biomage.Interface.
HasDefaultValue
, java.io.Serializable)
org.biomage.Protocol.
Parameterizable
(implements org.biomage.Interface.
HasParameterTypes
, java.io.Serializable)
org.biomage.Protocol.
Hardware
(implements org.biomage.Interface.
HasHardwareManufacturers
, org.biomage.Interface.
HasSoftwares
, org.biomage.Interface.
HasType
, java.io.Serializable)
org.biomage.Protocol.
Protocol
(implements org.biomage.Interface.
HasHardwares
, org.biomage.Interface.
HasSoftwares
, org.biomage.Interface.
HasType
, java.io.Serializable)
org.biomage.Protocol.
Software
(implements org.biomage.Interface.
HasHardware
, org.biomage.Interface.
HasSoftwareManufacturers
, org.biomage.Interface.
HasSoftwares
, org.biomage.Interface.
HasType
, java.io.Serializable)
org.biomage.QuantitationType.
QuantitationType
(implements org.biomage.Interface.
HasChannel
, org.biomage.Interface.
HasConfidenceIndicators
, org.biomage.Interface.
HasDataType
, org.biomage.Interface.
HasQuantitationTypeMaps
, org.biomage.Interface.
HasScale
, java.io.Serializable)
org.biomage.QuantitationType.
SpecializedQuantitationType
(implements java.io.Serializable)
org.biomage.QuantitationType.
StandardQuantitationType
(implements java.io.Serializable)
org.biomage.QuantitationType.
ConfidenceIndicator
(implements org.biomage.Interface.
HasTargetQuantitationType
, java.io.Serializable)
org.biomage.QuantitationType.
Error
(implements java.io.Serializable)
org.biomage.QuantitationType.
ExpectedValue
(implements java.io.Serializable)
org.biomage.QuantitationType.
PValue
(implements java.io.Serializable)
org.biomage.QuantitationType.
DerivedSignal
(implements java.io.Serializable)
org.biomage.QuantitationType.
Failed
(implements java.io.Serializable)
org.biomage.QuantitationType.
MeasuredSignal
(implements java.io.Serializable)
org.biomage.QuantitationType.
PresentAbsent
(implements java.io.Serializable)
org.biomage.QuantitationType.
Ratio
(implements java.io.Serializable)
org.biomage.BioAssayData.
QuantitationTypeDimension
(implements org.biomage.Interface.
HasQuantitationTypes
, java.io.Serializable)
org.biomage.AuditAndSecurity.
Security
(implements org.biomage.Interface.
HasOwner
, org.biomage.Interface.
HasSecurityGroups
, java.io.Serializable)
org.biomage.AuditAndSecurity.
SecurityGroup
(implements org.biomage.Interface.
HasMembers
, java.io.Serializable)
org.biomage.ArrayDesign.
Zone
(implements org.biomage.Interface.
HasDistanceUnit
, java.io.Serializable)
org.biomage.Array.
ManufactureLIMS
(implements org.biomage.Interface.
HasBioMaterial
, org.biomage.Interface.
HasFeature
, org.biomage.Interface.
HasIdentifierLIMS
, java.io.Serializable)
org.biomage.Array.
ManufactureLIMSBiomaterial
(implements java.io.Serializable)
org.biomage.HigherLevelAnalysis.
Node
(implements org.biomage.Interface.
HasNodeContents
, org.biomage.Interface.
HasNodes
, org.biomage.Interface.
HasNodeValue
, java.io.Serializable)
org.biomage.HigherLevelAnalysis.
NodeContents
(implements org.biomage.Interface.
HasBioAssayDimension
, org.biomage.Interface.
HasDesignElementDimension
, org.biomage.Interface.
HasQuantitationDimension
, java.io.Serializable)
org.biomage.Protocol.
ParameterizableApplication
(implements org.biomage.Interface.
HasParameterValues
, java.io.Serializable)
org.biomage.Protocol.
HardwareApplication
(implements org.biomage.Interface.
HasHardware
, java.io.Serializable)
org.biomage.Protocol.
ProtocolApplication
(implements org.biomage.Interface.
HasHardwareApplications
, org.biomage.Interface.
HasPerformers
, org.biomage.Interface.
HasProtocol
, org.biomage.Interface.
HasSoftwareApplications
, java.io.Serializable)
org.biomage.Protocol.
SoftwareApplication
(implements org.biomage.Interface.
HasSoftware
, java.io.Serializable)
org.biomage.BioSequence.
SeqFeature
(implements org.biomage.Interface.
HasRegions
, java.io.Serializable)
org.biomage.BioAssayData.
DesignElementMapping
(implements org.biomage.Interface.
HasDesignElementMaps
, java.io.Serializable)
org.biomage.BioAssayData.
DesignElementTuple
(implements org.biomage.Interface.
HasQuantitationTypeTuples
, java.io.Serializable)
org.biomage.Description.
ExternalReference
(implements java.io.Serializable)
org.biomage.Array.
FeatureDefect
(implements org.biomage.Interface.
HasDefectType
, org.biomage.Interface.
HasFeature
, org.biomage.Interface.
HasPositionDelta
, java.io.Serializable)
org.biomage.DesignElement.
FeatureInformation
(implements org.biomage.Interface.
HasFeature
, org.biomage.Interface.
HasMismatchInformation
, java.io.Serializable)
org.biomage.DesignElement.
FeatureLocation
(implements java.io.Serializable)
org.biomage.Measurement.
Measurement
(implements org.biomage.Interface.
HasUnit
, java.io.Serializable)
org.biomage.DesignElement.
MismatchInformation
(implements java.io.Serializable)
org.biomage.HigherLevelAnalysis.
NodeValue
(implements org.biomage.Interface.
HasDataType
, org.biomage.Interface.
HasScale
, org.biomage.Interface.
HasType
, java.io.Serializable)
org.biomage.Protocol.
ParameterValue
(implements org.biomage.Interface.
HasParameterType
, java.io.Serializable)
org.biomage.DesignElement.
Position
(implements org.biomage.Interface.
HasDistanceUnit
, java.io.Serializable)
org.biomage.Array.
PositionDelta
(implements org.biomage.Interface.
HasDistanceUnit
, java.io.Serializable)
org.biomage.BioAssayData.
QuantitationTypeMapping
(implements org.biomage.Interface.
HasQuantitationTypeMaps
, java.io.Serializable)
org.biomage.BioAssayData.
QuantitationTypeTuple
(implements java.io.Serializable)
org.biomage.BioSequence.
SeqFeatureLocation
(implements org.biomage.Interface.
HasCoordinate
, org.biomage.Interface.
HasSubregions
, java.io.Serializable)
org.biomage.BioSequence.
SequencePosition
(implements java.io.Serializable)
org.biomage.DesignElement.
CompositePosition
(implements org.biomage.Interface.
HasComposite
, org.biomage.Interface.
HasMismatchInformation
, java.io.Serializable)
org.biomage.DesignElement.
ReporterPosition
(implements org.biomage.Interface.
HasMismatchInformation
, org.biomage.Interface.
HasReporter
, java.io.Serializable)
org.biomage.Measurement.
Unit
(implements java.io.Serializable)
org.biomage.Measurement.
ConcentrationUnit
(implements java.io.Serializable)
org.biomage.Measurement.
DistanceUnit
(implements java.io.Serializable)
org.biomage.Measurement.
MassUnit
(implements java.io.Serializable)
org.biomage.Measurement.
OtherUnit
(implements java.io.Serializable)
org.biomage.Measurement.
QuantityUnit
(implements java.io.Serializable)
org.biomage.Measurement.
TemperatureUnit
(implements java.io.Serializable)
org.biomage.Measurement.
TimeUnit
(implements java.io.Serializable)
org.biomage.Measurement.
VolumeUnit
(implements java.io.Serializable)
org.biomage.Array.
ZoneDefect
(implements org.biomage.Interface.
HasDefectType
, org.biomage.Interface.
HasPositionDelta
, org.biomage.Interface.
HasZone
, java.io.Serializable)
org.biomage.ArrayDesign.
ZoneGroup
(implements org.biomage.Interface.
HasDistanceUnit
, org.biomage.Interface.
HasZoneLayout
, org.biomage.Interface.
HasZoneLocations
, java.io.Serializable)
org.biomage.ArrayDesign.
ZoneLayout
(implements org.biomage.Interface.
HasDistanceUnit
, java.io.Serializable)
org.biomage.tools.helpers.
ExternalDataCubeIOHelpers
gov.nih.nci.caarray.ui.experiment.data.
ExtractData
gov.nih.nci.caarray.ui.experiment.data.
ExtractDropDownData
gov.nih.nci.caarray.ui.experiment.data.
FactorDropDownData
gov.nih.nci.caarray.common.data.experiment.
FactorValueData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.arraydesign.
FeatureGroupData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.arraydesign.
FeatureGroupDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.services.test.
FetchFileListTest
gov.nih.nci.caarray.services.util.dataconverter.mapper.
FieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
ArrayManufacturerFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
BibliographicReferenceAccessionFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
BioMaterialParentsFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
BioSourceProviderFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
Date2NameValueTypeFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
Date2StringFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
DescriptionFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
ExperimentTypeFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
HardwaresSoftwaresParameterTypesFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
Id2ObjectFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
IdFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
LabelFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
NumberOfChannelsFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
ParsingSucceededFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
ProtocolApplicationFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
ProtocolApplicationPerformerFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
ProviderFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
SoftwareOrHardwareManufacturerFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
SqlDate2JavaDateFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
TechnologyTypeFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
UnitDataFieldMapper
gov.nih.nci.caarray.services.util.dataconverter.mapper.fieldmappers.
VocabDataFieldMapper
gov.nih.nci.caarray.common.data.util.
FileData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.fileuploadapplet.
FileDataObject
gov.nih.nci.caarray.services.util.file.
FileLocatorUtils
gov.nih.nci.caarray.services.fileparse.
FileMessageTypes
gov.nih.nci.caarray.services.util.file.
FilePacker
gov.nih.nci.caarray.services.fileparse2.mdb.
FileParserDelegate
gov.nih.nci.caarray.services.fileparse.
FileParsingDelegate
gov.nih.nci.caarray.services.fileparse.
FileParsingService
gov.nih.nci.caarray.common.data.fileupload2.
FileType
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.fileupload2.
HybridizationFileType
gov.nih.nci.caarray.services.fileparse2.util.
FileTypeFactory
gov.nih.nci.caarray.services.fileparse2.util.
FileTypeGroupMap
gov.nih.nci.caarray.services.fileupload.
FileTypeManager
gov.nih.nci.caarray.common.data.fileupload2.
FileTypeMap
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileupload.
FileUploadDelegate
gov.nih.nci.caarray.services.fileupload2.mdb.
FileUploadHandlerMDB
(implements javax.ejb.MessageDrivenBean, javax.jms.MessageListener)
gov.nih.nci.caarray.common.delegate.
FileUploadManagerDelegate
gov.nih.nci.caarray.services.fileparse.mdb.
FileUploadManagerMDB
(implements javax.ejb.MessageDrivenBean, javax.jms.MessageListener)
gov.nih.nci.caarray.services.fileupload2.
FileUploadUtils
gov.nih.nci.caarray.services.util.file.
FileUtility
gov.nih.nci.caarray.services.util.file.
FileValidator
gov.nih.nci.caarray.services.util.file.
FileZipper
org.biomage.tools.generate_er.
ForeignKey
gov.nih.nci.caarray.ui.core.
FormUtils
gov.nih.nci.caarray.services.fileparse.gal.
GalBlockData
gov.nih.nci.caarray.services.fileparse.gal.
GalFeatureData
(implements gov.nih.nci.caarray.services.util.parse.
ParserBeanPropertiesInterface
)
gov.nih.nci.caarray.services.fileparse.gal.
GalFileParseHandler
gov.nih.nci.caarray.services.fileparse.gal.
GalHeaderListener
gov.nih.nci.caarray.services.fileparse.gal.
GalHeaderParser
(implements gov.nih.nci.caarray.services.util.parse.
Notifiable
)
gov.nih.nci.caarray.services.fileparse.gal.
GalIdGenerator
gov.nih.nci.caarray.services.fileparse.gal.
GalImportService
gov.nih.nci.caarray.services.fileparse.gal.magemapping.
GalToMageMapping
gov.nih.nci.caarray.services.fileparse.gpr.
GenePixDataMatrix
(implements gov.nih.nci.caarray.services.fileparse.
ParsingDataMatrix
)
gov.nih.nci.caarray.services.fileparse.gpr.
GenePixDesignElement
(implements gov.nih.nci.caarray.services.fileparse.
ParsingDesignElement
)
gov.nih.nci.caarray.services.fileparse.gpr.
GenePixDesignElementService
(implements gov.nih.nci.caarray.services.fileparse.
DesignElementService
)
gov.nih.nci.caarray.services.arraydesign.loader.genepix.
GenepixGalArrayDesignLoader
gov.nih.nci.caarray.services.arraydesign.loader.genepix.
GenepixGprArrayDesignLoader
gov.nih.nci.caarray.services.fileparse.gpr.
GenePixQuantificationService
(implements gov.nih.nci.caarray.services.fileparse.
QuantitationTypeService
)
gov.nih.nci.caarray.services.fileparse.gpr.
GenePixQuantitationType
(implements gov.nih.nci.caarray.services.fileparse.
ParsingQuantitationType
)
javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
javax.servlet.http.HttpServlet (implements java.io.Serializable)
gov.nih.nci.caarray.services.util.file.
DownloadFile
gov.nih.nci.caarray.ui.experiment.
ExperimentFileDownloadServlet
gov.nih.nci.caarray.services.util.file.
ProcessBatchFileDownload
gov.nih.nci.caarray.services.util.file.
ProcessFetchFileList
gov.nih.nci.caarray.services.util.file.
ProcessFileUpload
gov.nih.nci.caarray.services.fileparse.gpr.
GprDataRow
(implements gov.nih.nci.caarray.services.fileparse.
DataRow
)
gov.nih.nci.caarray.services.fileparse.gpr.
GprFileParseHandler
gov.nih.nci.caarray.services.fileparse.gpr.
GprHeaderListener
gov.nih.nci.caarray.services.fileparse.gpr.
GprHeaderParser
(implements gov.nih.nci.caarray.services.util.parse.
Notifiable
)
gov.nih.nci.caarray.services.fileparse.gpr.
GprParsingService
(implements gov.nih.nci.caarray.services.fileparse.
DataFileProcessor
)
org.biomage.tools.apps.annot.
GuiSet
gov.nih.nci.caarray.common.data.protocol.
HardwareData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.protocol.
HardwareDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.common.delegate.
HardwareManagerDelegate
org.biomage.HigherLevelAnalysis.
HigherLevelAnalysis_package
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.arraydesign.test.
HolderBean
gov.nih.nci.caarray.services.util.properties.
HttpFileProperties
gov.nih.nci.caarray.ui.core.
HttpFileUploadAppletParams
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.experiment.data.
HttpFileUploadAppletParams
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.experiment.data.
HttpFileUploadCache
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
HttpFileUploader
gov.nih.nci.caarray.ui.core.
HttpFileUploadSessionData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
HttpTunnelingFetchFileList
gov.nih.nci.caarray.ui.core.
HttpUploadedFileData
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.experiment.data.
HttpUploadedFileData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
HttpUploadFile
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
HttpUploadParameters
gov.nih.nci.caarray.ui.experiment.data.
Hybridization
gov.nih.nci.caarray.ui.experiment.data.
HybridizationCommonData
gov.nih.nci.caarray.services.hybridization.
HybridizationDataJob
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.experiment.data.
HybridizationDataObj
gov.nih.nci.caarray.ui.experiment.
HybridizationDataObject
gov.nih.nci.caarray.services.experiment.ejb.
HybridizationDeletionConfiguration
(implements java.io.Serializable)
gov.nih.nci.caarray.services.experiment.ejb.
HybridizationDeletionResult
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.experiment.
HybridizationFactorDataObject
gov.nih.nci.caarray.common.delegate.
HybridizationFileHandlerDelegate
gov.nih.nci.caarray.services.hybridization.
HybridizationFileHandlerFactory
gov.nih.nci.caarray.services.fileparse2.mdb.
HybridizationFileParserMDB
(implements javax.ejb.MessageDrivenBean, javax.jms.MessageListener)
gov.nih.nci.caarray.services.fileparse2.
HybridizationFileParsingService
org.biomage.Experiment.
HybridizationFileUpload
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
HybridizationFileUploadData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.arraydesign.loader.illumina.
IlluminaArrayDesignLoader
gov.nih.nci.caarray.services.bioassaydata.
IlluminaDbDataHanderDataSource
gov.nih.nci.caarray.services.arraydesign.loader.imagene.
ImageneTxtArrayDesignLoader
org.biomage.tools.xmlutils.
ImportExportTest
org.biomage.tools.generate_er.
Index
java.io.InputStream (implements java.io.Closeable)
java.io.FilterInputStream
gov.nih.nci.caarray.services.fileparse2.parsers.
AppendInputStream
javax.swing.InputVerifier
org.biomage.tools.apps.annot.validator.
FloatValidator
org.biomage.tools.apps.annot.validator.
IntValidator
org.biomage.tools.apps.annot.validator.
MandatoryFloat
org.biomage.tools.apps.annot.validator.
MandatoryInt
org.biomage.tools.apps.annot.validator.
MandatoryText
org.biomage.tools.apps.annot.validator.
XMLConvertInputVerifier
gov.nih.nci.caarray.services.fileparse2.arraydesign.
InternalFeatureIdGenerator
gov.nih.nci.caarray.services.util.parse.
InternalTable
gov.nih.nci.caarray.services.util.cache.
JCSHelper
org.apache.ojb.broker.accesslayer.JdbcAccessImpl (implements org.apache.ojb.broker.accesslayer.JdbcAccess)
gov.nih.nci.caarray.services.util.ojb.
JdbcAccessImpl
org.biomage.tools.helpers.
JDBCConnection2
org.biomage.tools.helpers.
JDBCConnectionImpl2
gov.nih.nci.caarray.services.security.db.
JDBCParms
org.biomage.tools.helpers.
JDBCParms
gov.nih.nci.caarray.services.util.ojb.conversions.
KindCV2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
gov.nih.nci.caarray.services.security.
LdapAuthenticationDAObj
(implements gov.nih.nci.caarray.services.security.intf.
AuthenticationDAItf
)
gov.nih.nci.caarray.services.security.db.
LDAPConnection
gov.nih.nci.caarray.services.util.file.
LineSplitterImpl
(implements gov.nih.nci.caarray.services.util.file.
LineSplitter
)
org.biomage.tools.generate_er.
LinkingKey
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
LoadDuplicateFileNameProcessor
gov.nih.nci.caarray.services.security.mageom.
LoggingSecuredElementOrphanHandler
(implements gov.nih.nci.caarray.services.security.mageom.
SecuredElementOrphanHandler
)
gov.nih.nci.caarray.services.util.
LoggingUserTransaction
(implements javax.transaction.UserTransaction)
gov.nih.nci.caarray.services.util.ojb.conversions.
Long2LongObjectFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
org.biomage.tools.xmlutils.
MAGEContentHandler.UnresolvedRef
gov.nih.nci.caarray.services.mageloader.
MAGECubeBuilder
org.biomage.Common.
MAGEJava
(implements java.io.Serializable)
gov.nih.nci.caarray.services.mageml.
MAGEMLFileValues
(implements java.io.Serializable)
gov.nih.nci.caarray.services.mageml.
MAGEMLGeneratorDelegate
gov.nih.nci.caarray.services.mageml.mdb.
MAGEMLGeneratorMDB
(implements javax.ejb.MessageDrivenBean, javax.jms.MessageListener)
gov.nih.nci.caarray.services.security.test.
MAGEMLImportSecuredElementBuilder
(implements gov.nih.nci.caarray.services.security.test.
SecuredElementBuilder
)
gov.nih.nci.caarray.services.mageml.
MAGEMLManagerDelegate
gov.nih.nci.caarray.services.util.mage.
MAGEReader
org.biomage.tools.xmlutils.
MAGEReader
gov.nih.nci.caarray.services.mageloader.
MAGEResolver
(implements org.xml.sax.EntityResolver)
gov.nih.nci.caarray.services.util.mage.
MAGEWriter
gov.nih.nci.caarray.services.util.db.
ManagerDB
gov.nih.nci.caarray.services.useradmin.
AdminManagerDB
gov.nih.nci.caarray.services.fileupload.
ArrayDesignFinder
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignManagerDB
gov.nih.nci.caarray.services.array.
ArrayManagerDB
gov.nih.nci.caarray.services.biomaterial.
BioMaterialManagerDB
gov.nih.nci.caarray.services.arraydesign.
CompositeGroupManagerDB
gov.nih.nci.caarray.services.contact.
ContactManagerDB
gov.nih.nci.caarray.services.fileparse2.
DesignElementManagerDB
gov.nih.nci.caarray.services.experiment.
ExperimentManagerDB
gov.nih.nci.caarray.services.arraydesign.
FeatureGroupManagerDB
gov.nih.nci.caarray.services.fileparse.
FileParseManagerDB
gov.nih.nci.caarray.services.fileupload2.
FileUploadManagerDB
gov.nih.nci.caarray.services.protocol.
HardwareManagerDB
gov.nih.nci.caarray.services.fileparse2.
HybridizationManagerDB
gov.nih.nci.caarray.services.bioassaydata.
IlluminaDataHandlerDataSourceManagerDB
gov.nih.nci.caarray.services.util.jms.
JMSMessageManagerDB
gov.nih.nci.caarray.services.util.mage.
MAGEManagerDB
gov.nih.nci.caarray.services.mageml.
MAGEMLExportManagerDB
gov.nih.nci.caarray.services.mageloader.
MAGEMLImportManagerDB
gov.nih.nci.caarray.services.protocol.
MeasurementManagerDB
gov.nih.nci.caarray.services.protocol.
ProtocolManagerDB
gov.nih.nci.caarray.services.fileparse2.
QuantitationTypeManagerDB
gov.nih.nci.caarray.services.arraydesign.
ReporterGroupManagerDB
gov.nih.nci.caarray.services.security.
SecurityAdminService
gov.nih.nci.caarray.services.protocol.
SoftwareManagerDB
gov.nih.nci.caarray.services.vocab.
VocabManagerDB
gov.nih.nci.caarray.services.arraydesign.
ZoneGroupManagerDB
org.biomage.Measurement.
MassUnit.UnitNameCV
(implements java.io.Serializable)
org.biomage.Measurement.
Measurement_package
(implements java.io.Serializable)
org.biomage.Measurement.
Measurement.KindCV
(implements java.io.Serializable)
org.biomage.Measurement.
Measurement.Type
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.measurement.
MeasurementData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.jms.
MessageData
(implements java.io.Serializable)
org.biomage.Common.
NameValueType
(implements org.biomage.Interface.
HasPropertySets
, java.io.Serializable)
gov.nih.nci.caarray.services.util.netcdf.
NETCDFCreator
gov.nih.nci.caarray.services.util.netcdf.
NETCDFFileReader
gov.nih.nci.caarray.services.util.netcdf.
NonNumericQuantitationTypes
gov.nih.nci.caarray.services.util.netcdf.
NonNumericQuantitationTypesService
gov.nih.nci.caarray.services.util.cache.
ObjectCacheEHCacheImpl
(implements org.apache.ojb.broker.cache.ObjectCache)
gov.nih.nci.caarray.services.util.db.
ODMGImplementationManager
gov.nih.nci.caarray.services.util.db.
OjbInitializer
(implements javax.servlet.ServletContextListener)
gov.nih.nci.caarray.services.util.properties.
OntologyCategoriesProperties
gov.nih.nci.caarray.ui.ontology.
OntologyConstants
gov.nih.nci.caarray.services.util.properties.
OntologyEntryAttrsProperties
org.biomage.tools.helpers.
OntologyHelper
org.biomage.tools.helpers.
OntologyHelper.ClassInformation
org.biomage.tools.helpers.
OntologyHelper.InstanceInformation
org.biomage.tools.helpers.
OntologyImport
gov.nih.nci.caarray.ui.useradmin.
OptionData
gov.nih.nci.caarray.services.util.ojb.conversions.
Order2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
gov.nih.nci.caarray.ui.core.
OrganizationComparator
(implements java.util.Comparator<T>)
gov.nih.nci.caarray.common.data.contact.
OrganizationDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.ojb.conversions.
OrientationMarkPosition2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
org.biomage.tools.apps.annot.data.
PageRecord
gov.nih.nci.caarray.common.data.protocol.
ParameterData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.protocol.
ParameterizableApplicationData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.protocol.
HardwareApplicationData
gov.nih.nci.caarray.common.data.protocol.
ProtocolApplicationData
gov.nih.nci.caarray.common.data.protocol.
SoftwareApplicationData
gov.nih.nci.caarray.common.data.protocol.
ParameterValueData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.parsers.
ParserUtils
gov.nih.nci.caarray.services.fileparse.
ParsingBioAssay
gov.nih.nci.caarray.services.util.properties.
ParsingProperties
gov.nih.nci.caarray.services.security.mageom.
PathElement
gov.nih.nci.caarray.services.security.mageom.
PathInfo
gov.nih.nci.caarray.services.util.ojb.
PBLifeCycleAdapter
(implements org.apache.ojb.broker.PBLifeCycleListener)
gov.nih.nci.caarray.services.util.ojb.
PBLifeCycleListenerAbstractClassPKPersistence
gov.nih.nci.caarray.services.util.ojb.
PBLifeCycleListenerCompoundResolver
gov.nih.nci.caarray.services.util.ojb.
PBLifeCycleListenerDescriptorModifier
gov.nih.nci.caarray.services.util.ojb.
PBLifeCycleListenerMAGEIdentifierAssigner
gov.nih.nci.caarray.services.util.ojb.
PBLifeCycleListenerOntologyEntryResolver
gov.nih.nci.caarray.services.security.mageom.
SecuredElementUpdateListener
org.biomage.tools.xmlutils.
PCDataImpl
(implements org.biomage.tools.xmlutils.
PCData
)
gov.nih.nci.caarray.services.mageloader.test.
PerfTest
gov.nih.nci.caarray.services.util.db.
PersistenceBrokerManager
gov.nih.nci.caarray.ui.core.
PersonComparator
(implements java.util.Comparator<T>)
gov.nih.nci.caarray.common.data.contact.
PersonDesc
(implements java.lang.Comparable<T>, java.io.Serializable)
gov.nih.nci.caarray.services.security.mageom.
PrimaryInfo
org.biomage.tools.generate_er.
PrimaryKey
gov.nih.nci.caarray.services.util.properties.
PropertiesReader
gov.nih.nci.caarray.services.security.db.
ProtectionAppGroupElement
gov.nih.nci.caarray.services.security.db.
ProtectionElement
gov.nih.nci.caarray.common.data.security.
ProtectionGroupData
(implements java.io.Serializable)
org.biomage.Protocol.
Protocol_package
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.protocol.
ProtocolData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.protocol.
ProtocolDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.common.delegate.
ProtocolManagerDelegate
gov.nih.nci.caarray.ui.protocol.
ProtocolUIUtils
gov.nih.nci.caarray.services.protocol.
ProtocolUtils
gov.nih.nci.caarray.common.data.experiment.
PublicationData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.experiment.
QualityControlData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.properties.
QuantitationNamesProperties
org.biomage.QuantitationType.
QuantitationType_package
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.parsers.
QuantitationTypeColumnsMap
gov.nih.nci.caarray.services.fileparse2.hybridization.
QuantitationTypeFinder
gov.nih.nci.caarray.services.fileparse2.util.
QuantitationTypeName2JavaPropertyNameMap
gov.nih.nci.caarray.services.fileparse.
QuantitationTypeServiceFactory
org.biomage.Measurement.
QuantityUnit.UnitNameCV
(implements java.io.Serializable)
org.apache.ojb.broker.accesslayer.QueryCustomizerDefaultImpl (implements org.apache.ojb.broker.accesslayer.QueryCustomizer)
gov.nih.nci.caarray.services.util.ojb.
QueryCustomizerExcludingObjectsMarkedAsDeleted
gov.nih.nci.caarray.services.security.
RdbmsAuthenticationDAObj
(implements gov.nih.nci.caarray.services.security.intf.
AuthenticationDAItf
)
gov.nih.nci.caarray.services.security.
RdbmsAuthorizationDAObj
(implements gov.nih.nci.caarray.services.security.intf.
AuthorizationDAItf
)
gov.nih.nci.caarray.services.util.file.
ReadZipFileContent
gov.nih.nci.caarray.services.fileparse2.arraydesign.test.
ReflectAccess
gov.nih.nci.caarray.common.data.arraydesign.
ReporterGroupData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.arraydesign.
ReporterGroupDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.arraydesign.
ReporterTypeData
gov.nih.nci.caarray.common.data.security.
Role
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.security.
RoleAssignmentData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.security.
RoleData
(implements java.io.Serializable)
org.apache.ojb.broker.accesslayer.RowReaderDefaultImpl (implements org.apache.ojb.broker.accesslayer.RowReader)
gov.nih.nci.caarray.services.util.ojb.
RowReaderBioSequence
gov.nih.nci.caarray.services.util.ojb.
RowReaderUnit
gov.nih.nci.caarray.services.util.
SearchCriteriaConverter
gov.nih.nci.caarray.services.security.mageom.
SecondaryInfo
gov.nih.nci.caarray.common.data.security.
SecuredElementData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.security.mageom.
SecuredElementIdUpdaterFactory
gov.nih.nci.caarray.services.security.mageom.mdb.
SecuredElementIdUpdaterMDB
(implements javax.ejb.MessageDrivenBean, javax.jms.MessageListener)
gov.nih.nci.caarray.services.security.mageom.
SecuredElementInfo
gov.nih.nci.caarray.services.security.mageom.
SecuredElementOrphanHandlerFactory
gov.nih.nci.caarray.services.security.mageom.mdb.
SecuredElementUpdateMessage
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.
SecurityConstants
gov.nih.nci.caarray.ui.core.
SecurityContextFilter
(implements javax.servlet.Filter)
gov.nih.nci.caarray.services.security.db.
SecurityDSConnectionUtil
gov.nih.nci.caarray.common.delegate.
SecurityManagerDelegate
gov.nih.nci.caarray.services.security.
SecurityObjFactory
gov.nih.nci.caarray.services.security.
SecurityServiceObj
(implements gov.nih.nci.caarray.services.security.intf.
SecurityServiceItf
)
gov.nih.nci.caarray.services.util.
SecurityUtils
gov.nih.nci.caarray.services.util.fileuploadapplet.
SelectedFiles
(implements java.io.Serializable)
gov.nih.nci.caarray.common.util.
SendMail
org.biomage.BioSequence.
SeqFeature.Basis
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileparse2.parsers.
SequenceInputFile
gov.nih.nci.caarray.services.fileupload2.
SerializableFileUploadBean
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileupload2.
FileParsingEntry
gov.nih.nci.caarray.services.fileupload2.
ArrayDesignFileParsingEntry
gov.nih.nci.caarray.services.fileupload2.
HybridizationFileParsingEntry
gov.nih.nci.caarray.services.fileupload2.
FileUploadEntry
gov.nih.nci.caarray.services.fileupload2.
ArrayDesignFileUploadEntry
gov.nih.nci.caarray.services.fileupload2.
HybridizationFileUploadEntry
gov.nih.nci.caarray.services.fileupload2.
MAGEMLFileUploadEntry
gov.nih.nci.caarray.services.fileupload2.
FileUploadGroup
gov.nih.nci.caarray.services.fileupload2.
ArrayDesignFileUploadGroup
gov.nih.nci.caarray.services.fileupload2.
HybridizationFileUploadGroup
gov.nih.nci.caarray.services.fileupload2.
FileUploadHistory
gov.nih.nci.caarray.common.data.fileupload2.
SerializableFileUploadDataBean
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.fileupload2.
FileParsingEntryData
gov.nih.nci.caarray.common.data.fileupload2.
ArrayDesignFileParsingEntryData
gov.nih.nci.caarray.common.data.fileupload2.
HybridizationFileParsingEntryData
gov.nih.nci.caarray.common.data.fileupload2.
FileUploadEntryData
gov.nih.nci.caarray.common.data.fileupload2.
ArrayDesignFileUploadEntryData
gov.nih.nci.caarray.common.data.fileupload2.
HybridizationFileUploadEntryData
gov.nih.nci.caarray.common.data.fileupload2.
MAGEMLFileUploadEntryData
gov.nih.nci.caarray.common.data.fileupload2.
FileUploadGroupData
gov.nih.nci.caarray.common.data.fileupload2.
ArrayDesignFileUploadGroupData
gov.nih.nci.caarray.common.data.fileupload2.
HybridizationFileUploadGroupData
gov.nih.nci.caarray.common.data.fileupload2.
FileUploadHistoryData
gov.nih.nci.caarray.common.data.fileupload2.
HybridizationFileUploadEntrySummaryData
gov.nih.nci.caarray.services.exception.
ServerMessageConstants
gov.nih.nci.caarray.services.util.
ServiceLocator
gov.nih.nci.caarray.services.util.dataconverter.mapper.
SimpleField
gov.nih.nci.caarray.services.util.dataconverter.mapper.
CollectionField
gov.nih.nci.caarray.services.fileparse2.hybridization.
SimpleQuantitationType
gov.nih.nci.caarray.common.data.protocol.
SoftwareData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.protocol.
SoftwareDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.common.delegate.
SoftwareManagerDelegate
gov.nih.nci.caarray.services.util.ojb.conversions.
SourceType2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
gov.nih.nci.caarray.services.util.db.
SqlUtil
gov.nih.nci.caarray.ui.
StringFormatter
org.biomage.tools.helpers.
StringManipHelpers
org.biomage.tools.helpers.
StringOutputHelpers
org.biomage.tools.generate_er.
Table
org.displaytag.decorator.TableDecorator
org.apache.taglibs.display.Decorator
gov.nih.nci.caarray.ui.
CaarrayDecorator
org.biomage.Measurement.
TemperatureUnit.UnitNameCV
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.
TestCallbackHandler
(implements javax.security.auth.callback.CallbackHandler)
gov.nih.nci.caarray.services.fileparse.test.
Tester
gov.nih.nci.caarray.services.security.test.
Tester
gov.nih.nci.caarray.services.test.
Tester
gov.nih.nci.caarray.services.util.netcdf.test.
Tester
gov.nih.nci.caarray.services.util.dataconverter.test.
TestUtils
java.lang.Thread (implements java.lang.Runnable)
gov.nih.nci.caarray.services.util.httpfileuploadapplet.
HttpFileUploadThread
gov.nih.nci.caarray.services.util.netcdf.
ThreeDArrayTransformer
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
gov.nih.nci.caarray.services.exception.
AccessDeniedException
gov.nih.nci.caarray.services.exception.
InheritedAccessDeniedException
gov.nih.nci.caarray.services.exception.
MissingSecuredElementIdException
gov.nih.nci.caarray.services.arraydesign.loader.agilent.
AgilentTxtFormatException
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignDataSourceException
gov.nih.nci.caarray.services.arraydesign.loader.handler.
ArrayDesignFileParsingException
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignRetrievalException
gov.nih.nci.caarray.services.arraydesign.loader.
ArrayDesignSaveException
gov.nih.nci.caarray.services.bioassaydata.
BioAssayDataLoaderException
gov.nih.nci.caarray.services.arraydesign.loader.affymetrix.
CdfFileNotFoundException
gov.nih.nci.caarray.services.exception.
ConfigurationException
gov.nih.nci.caarray.services.exception.
CreateObjectException
gov.nih.nci.caarray.services.exception.
CreateSecuredElementException
gov.nih.nci.caarray.services.bioassaydata.reader.
DataFileParseException
gov.nih.nci.caarray.services.bioassaydata.
DataHandlerDataSourceException
gov.nih.nci.caarray.services.exception.
DBException
gov.nih.nci.caarray.services.hybridization.
EntrySaveException
gov.nih.nci.caarray.services.hybridization.ejb.
FileUploadEntryLookupException
gov.nih.nci.caarray.services.arraydesign.loader.genepix.
GenepixGalFormatException
gov.nih.nci.caarray.services.arraydesign.loader.genepix.
GenepixGprFormatException
gov.nih.nci.caarray.common.exception.
GeneralException
gov.nih.nci.caarray.services.arraydesign.loader.illumina.
IlluminaCsvFormatException
gov.nih.nci.caarray.services.arraydesign.loader.imagene.
ImageneTxtFormatException
gov.nih.nci.caarray.common.exception.
ImportException
gov.nih.nci.caarray.services.exception.
InsertObjectException
org.biomage.Common.
MAGEException
gov.nih.nci.caarray.services.util.netcdf.
NETCDFException
gov.nih.nci.caarray.services.exception.
ObjectInUseException
gov.nih.nci.caarray.services.exception.
ObjectNotExistException
gov.nih.nci.caarray.services.exception.
ParseException
gov.nih.nci.caarray.services.security.db.
PoolException
java.lang.RuntimeException
gov.nih.nci.caarray.services.util.dataconverter.assembler.
AssemblerNotAvailableException
org.apache.commons.lang.exception.NestableRuntimeException (implements org.apache.commons.lang.exception.Nestable)
org.apache.ojb.broker.OJBRuntimeException
gov.nih.nci.caarray.services.util.cache.
RuntimeCacheException
gov.nih.nci.caarray.services.util.db.
PersistenceBrokerManagerInitializationException
gov.nih.nci.caarray.services.exception.
SecurityException
gov.nih.nci.caarray.services.exception.
ServiceLookupException
gov.nih.nci.caarray.services.test.
TestException
gov.nih.nci.caarray.services.util.transaction.
TransactionException
gov.nih.nci.caarray.services.arraydesign.loader.ucsf.
UcsfGalFormatException
gov.nih.nci.caarray.services.arraydesign.loader.ucsf.
UcsfGprFormatException
org.biomage.tools.generate_classes.
XMIParseHelpers.IDREFException
gov.nih.nci.caarray.services.fileparse2.arraydesign.test.
TimeCalls
gov.nih.nci.caarray.services.fileparse2.arraydesign.test.
BCELCalls
gov.nih.nci.caarray.services.fileparse2.arraydesign.test.
JavassistCalls
org.biomage.Measurement.
TimeUnit.UnitNameCV
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.db.
TransactionHandler
org.biomage.tools.generate_dtd.
TransformBioAssayData
(implements org.biomage.tools.generate_dtd.
WriteDTDFile.CreateClassTransformer
)
org.biomage.tools.generate_java.
TransformBioAssayData
(implements org.biomage.tools.generate_classes.
CreateMageClasses.CreateClassTransformer
)
gov.nih.nci.caarray.common.data.biomaterial.
TreatmentData
(implements java.io.Serializable)
gov.nih.nci.caarray.ui.biomaterial.
TreatmentEvent
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.ojb.conversions.
Type2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
gov.nih.nci.caarray.services.arraydesign.loader.ucsf.
UcsfGalArrayDesignLoader
gov.nih.nci.caarray.services.arraydesign.loader.ucsf.
UcsfGprArrayDesignLoader
gov.nih.nci.caarray.ui.
UIConstants
gov.nih.nci.caarray.common.exception.
UIMessageConstants
org.biomage.tools.generate_er.
Unique
gov.nih.nci.caarray.common.data.measurement.
UnitData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.ojb.conversions.
UnitNameCV2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
gov.nih.nci.caarray.common.data.fileupload2.
UploadedFileData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileupload.
UploadFile
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.MICROARRAY_FILE_TYPE
(implements java.io.Serializable)
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.AFFY_CEL_TYPE_CLASS
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.AFFY_CHP_TYPE_CLASS
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.GENEPIX_GAL_TYPE_CLASS
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.GENEPIX_GPR_TYPE_CLASS
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.GENEPIX_GPS_TYPE_CLASS
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.GENEPIX_SPOT_TYPE_CLASS
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.MAGEML_TYPE_CLASS
gov.nih.nci.caarray.services.fileupload.
UploadFileTypes.OTHER_TYPE_CLASS
gov.nih.nci.caarray.services.fileupload.
UploadFileValues
(implements gov.nih.nci.caarray.services.fileparse.
FileMessageInterface
, java.io.Serializable)
gov.nih.nci.caarray.ui.arraydesign.
UploadTypeData
gov.nih.nci.caarray.common.data.security.
UserData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.security.
UserDesc
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.
UserInfo
gov.nih.nci.caarray.ui.core.
UserInfo
gov.nih.nci.caarray.common.data.security.
UserRoleData
(implements java.io.Serializable)
gov.nih.nci.caarray.services.util.ojb.conversions.
Value2StringFieldConversion
(implements org.apache.ojb.broker.accesslayer.conversions.FieldConversion)
gov.nih.nci.caarray.ui.core.
VisibilityComparator
(implements java.util.Comparator<T>)
gov.nih.nci.caarray.common.data.security.
VisibilityData
gov.nih.nci.caarray.common.data.vocab.
VocabCategory
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.vocab.
VocabData
(implements java.io.Serializable)
gov.nih.nci.caarray.common.data.vocab.
AgeData
gov.nih.nci.caarray.common.data.vocab.
BiometricsData
gov.nih.nci.caarray.common.data.vocab.
ChromosomalAberrationData
gov.nih.nci.caarray.common.data.vocab.
VocabDesc
(implements java.lang.Comparable<T>, java.io.Serializable)
gov.nih.nci.caarray.common.delegate.
VocabManagerDelegate
gov.nih.nci.caarray.services.vocab.
VocabUtils
org.biomage.Measurement.
VolumeUnit.UnitNameCV
(implements java.io.Serializable)
org.apache.commons.beanutils.WrapDynaBean (implements org.apache.commons.beanutils.DynaBean)
gov.nih.nci.caarray.services.fileparse2.parsers.
LocalDynaBeanWrapper
(implements gov.nih.nci.caarray.services.fileparse2.parsers.
LocalDynaBean
)
gov.nih.nci.caarray.services.fileparse2.hybridization.
HybridizationRowWrapper
gov.nih.nci.caarray.services.fileparse2.arraydesign.
ParsedFeature
gov.nih.nci.caarray.services.fileparse2.hybridization.
SimpleDesignElement
gov.nih.nci.caarray.services.util.parse.
LocalDynaBeanWrapper
(implements gov.nih.nci.caarray.services.util.parse.
LocalDynaBean
)
org.biomage.tools.generate_dtd.
WriteDTDElement
org.biomage.tools.generate_dtd.
WriteDTDClassElement
org.biomage.tools.generate_dtd.
WriteDTDMageElement
org.biomage.tools.generate_dtd.
WriteDTDPackageElement
org.biomage.tools.generate_dtd.
WriteDTDFile
org.biomage.tools.generate_dtd.
WriteDTDFile.PackageDependencies
org.biomage.tools.generate_classes.
XMIParseHelpers
gov.nih.nci.caarray.services.util.fileuploadapplet.
Zipper
gov.nih.nci.caarray.services.util.file.
ZipUtil
gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers.
ZoneLocationZoneMatcher
(implements gov.nih.nci.caarray.services.fileparse2.arraydesign.
ZoneMatcher
)
Interface Hierarchy
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignDataSource
gov.nih.nci.caarray.services.arraydesign.loader.handler.
ArrayDesignFileHandler
gov.nih.nci.caarray.services.fileparse2.arraydesign.
ArrayDesignFileHeaderParserItf
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignManager
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignSecurityHelper
gov.nih.nci.caarray.services.security.intf.
AuthenticationDAItf
gov.nih.nci.caarray.services.security.intf.
AuthorizationDAItf
gov.nih.nci.caarray.services.bioassaydata.
BioAssayDataLoader
org.biomage.tools.generate_classes.
CreateMageClasses.CreateClassTransformer
gov.nih.nci.caarray.common.data.util.
DataDescInterface
gov.nih.nci.caarray.services.fileparse.
DataFileProcessor
org.biomage.tools.apps.annot.data.
DataLoader
gov.nih.nci.caarray.services.fileparse.
DataRow
gov.nih.nci.caarray.services.util.parse.
DelimitedImportListener
gov.nih.nci.caarray.services.fileparse.
DesignElementService
org.apache.commons.beanutils.DynaBean
gov.nih.nci.caarray.services.fileparse2.parsers.
LocalDynaBean
gov.nih.nci.caarray.services.util.parse.
LocalDynaBean
gov.nih.nci.caarray.services.fileparse.
FileMessageInterface
gov.nih.nci.caarray.services.hybridization.
FileUploadEntrySaver
org.apache.struts.upload.FormFile
gov.nih.nci.caarray.ui.core.
CustomFormFile
org.biomage.Interface.
HasAccessions
org.biomage.Interface.
HasAction
org.biomage.Interface.
HasActionMeasurement
org.biomage.Interface.
HasAdjustments
org.biomage.Interface.
HasAffiliation
org.biomage.Interface.
HasAnalysisResults
org.biomage.Interface.
HasAnnotations
org.biomage.Interface.
HasArray
org.biomage.Interface.
HasArrayDesign
org.biomage.Interface.
HasArrayGroup
org.biomage.Interface.
HasArrayManufactureDeviations
org.biomage.Interface.
HasArrayManufacturers
org.biomage.Interface.
HasArrays
org.biomage.Interface.
HasAssociations
org.biomage.Interface.
HasAuditTrail
org.biomage.Interface.
HasBibliographicReferences
org.biomage.Interface.
HasBioAssay
org.biomage.Interface.
HasBioAssayCreation
org.biomage.Interface.
HasBioAssayData
org.biomage.Interface.
HasBioAssayDataSources
org.biomage.Interface.
HasBioAssayDimension
org.biomage.Interface.
HasBioAssayFactorValues
org.biomage.Interface.
HasBioAssayMapping
org.biomage.Interface.
HasBioAssayMaps
org.biomage.Interface.
HasBioAssayMapTarget
org.biomage.Interface.
HasBioAssays
org.biomage.Interface.
HasBioAssayTreatments
org.biomage.Interface.
HasBioAssayTupleData
org.biomage.Interface.
HasBioDataValues
org.biomage.Interface.
HasBiologicalCharacteristics
org.biomage.Interface.
HasBioMaterial
org.biomage.Interface.
HasCategory
org.biomage.Interface.
HasChannel
org.biomage.Interface.
HasChannels
org.biomage.Interface.
HasCharacteristics
org.biomage.Interface.
HasClusterBioAssayData
org.biomage.Interface.
HasComponentCompounds
org.biomage.Interface.
HasComposite
org.biomage.Interface.
HasCompositeCompositeMaps
org.biomage.Interface.
HasCompositeGroups
org.biomage.Interface.
HasCompositePositionSources
org.biomage.Interface.
HasCompositeSequence
org.biomage.Interface.
HasCompositeSequences
org.biomage.Interface.
HasCompound
org.biomage.Interface.
HasCompoundIndices
org.biomage.Interface.
HasCompoundMeasurements
org.biomage.Interface.
HasConfidenceIndicators
org.biomage.Interface.
HasContacts
org.biomage.Interface.
HasContainedFeatures
org.biomage.Interface.
HasControlFeatures
org.biomage.Interface.
HasControlledFeatures
org.biomage.Interface.
HasControlType
org.biomage.Interface.
HasCoordinate
org.biomage.Interface.
HasDatabase
org.biomage.Interface.
HasDatabaseReferences
org.biomage.Interface.
HasDataType
org.biomage.Interface.
HasDefaultValue
org.biomage.Interface.
HasDefectType
org.biomage.Interface.
HasDerivedBioAssayData
org.biomage.Interface.
HasDerivedBioAssayDataTarget
org.biomage.Interface.
HasDerivedBioAssayMap
org.biomage.Interface.
HasDescriptions
org.biomage.Interface.
HasDesignElement
org.biomage.Interface.
HasDesignElementDimension
org.biomage.Interface.
HasDesignElementMapping
org.biomage.Interface.
HasDesignElementMaps
org.biomage.Interface.
HasDesignElementTuples
org.biomage.Interface.
HasDesignProviders
org.biomage.Interface.
HasDistanceUnit
org.biomage.Interface.
HasExperimentalFactor
org.biomage.Interface.
HasExperimentalFactors
org.biomage.Interface.
HasExperimentDesigns
org.biomage.Interface.
HasExternalLIMS
org.biomage.Interface.
HasExternalReference
org.biomage.Interface.
HasFactorValues
org.biomage.Interface.
HasFailTypes
org.biomage.Interface.
HasFeature
org.biomage.Interface.
HasFeatureDefects
org.biomage.Interface.
HasFeatureExtraction
org.biomage.Interface.
HasFeatureGroup
org.biomage.Interface.
HasFeatureGroups
org.biomage.Interface.
HasFeatureInformationSources
org.biomage.Interface.
HasFeatureLIMSs
org.biomage.Interface.
HasFeatureLocation
org.biomage.Interface.
HasFeatureReporterMaps
org.biomage.Interface.
HasFeatures
org.biomage.Interface.
HasFeatureShape
org.biomage.Interface.
HasFiducials
org.biomage.Interface.
HasFiducialType
org.biomage.Interface.
HasFormat
org.biomage.Interface.
HasHardware
org.biomage.Interface.
HasHardwareApplications
org.biomage.Interface.
HasHardwareManufacturers
org.biomage.Interface.
HasHardwares
org.biomage.Interface.
HasIdentifierLIMS
org.biomage.Interface.
HasImages
org.biomage.Interface.
HasImmobilizedCharacteristics
org.biomage.Interface.
HasInformation
org.biomage.Interface.
HasLabels
org.biomage.Interface.
HasMaterialType
org.biomage.Interface.
HasMeasuredBioAssayData
org.biomage.Interface.
HasMeasuredBioAssayTarget
org.biomage.Interface.
HasMeasurement
org.biomage.Interface.
HasMembers
org.biomage.Interface.
HasMismatchInformation
org.biomage.Interface.
HasNodeContents
org.biomage.Interface.
HasNodes
org.biomage.Interface.
HasNodeValue
org.biomage.Interface.
HasNormalizationDescription
org.biomage.Interface.
HasOntologyEntries
org.biomage.Interface.
HasOntologyReference
org.biomage.Interface.
HasOwner
org.biomage.Interface.
HasParameters
org.biomage.Interface.
HasParameterType
org.biomage.Interface.
HasParameterTypes
org.biomage.Interface.
HasParameterValues
org.biomage.Interface.
HasParent
org.biomage.Interface.
HasPerformer
org.biomage.Interface.
HasPerformers
org.biomage.Interface.
HasPhysicalBioAssay
org.biomage.Interface.
HasPhysicalBioAssayData
org.biomage.Interface.
HasPhysicalBioAssaySource
org.biomage.Interface.
HasPhysicalBioAssayTarget
org.biomage.Interface.
HasPolymerType
org.biomage.Interface.
HasPosition
org.biomage.Interface.
HasPositionDelta
org.biomage.Interface.
HasProducerTransformation
org.biomage.Interface.
HasPropertySets
org.biomage.Interface.
HasProtocol
org.biomage.Interface.
HasProtocolApplications
org.biomage.Interface.
HasProviders
org.biomage.Interface.
HasQualityControlDescription
org.biomage.Interface.
HasQualityControlStatistics
org.biomage.Interface.
HasQuantitationDimension
org.biomage.Interface.
HasQuantitationType
org.biomage.Interface.
HasQuantitationTypeDimension
org.biomage.Interface.
HasQuantitationTypeMapping
org.biomage.Interface.
HasQuantitationTypeMaps
org.biomage.Interface.
HasQuantitationTypes
org.biomage.Interface.
HasQuantitationTypeTuples
org.biomage.Interface.
HasRegions
org.biomage.Interface.
HasReplicateDescription
org.biomage.Interface.
HasReporter
org.biomage.Interface.
HasReporterCompositeMaps
org.biomage.Interface.
HasReporterGroups
org.biomage.Interface.
HasReporterPositionSources
org.biomage.Interface.
HasReporters
org.biomage.Interface.
HasRoles
org.biomage.Interface.
HasScale
org.biomage.Interface.
HasSecurity
org.biomage.Interface.
HasSecurityGroups
org.biomage.Interface.
HasSeqFeatures
org.biomage.Interface.
HasSequenceDatabases
org.biomage.Interface.
HasSoftware
org.biomage.Interface.
HasSoftwareApplications
org.biomage.Interface.
HasSoftwareManufacturers
org.biomage.Interface.
HasSoftwares
org.biomage.Interface.
HasSourceBioAssays
org.biomage.Interface.
HasSourceBioMaterialMeasurements
org.biomage.Interface.
HasSourceContact
org.biomage.Interface.
HasSourcesQuantitationType
org.biomage.Interface.
HasSpecies
org.biomage.Interface.
HasSubregions
org.biomage.Interface.
HasSubstrateType
org.biomage.Interface.
HasSummaryStatistics
org.biomage.Interface.
HasSurfaceType
org.biomage.Interface.
HasTarget
org.biomage.Interface.
HasTargetQuantitationType
org.biomage.Interface.
HasTechnologyType
org.biomage.Interface.
HasTopBioMaterial
org.biomage.Interface.
HasTopLevelBioAssays
org.biomage.Interface.
HasTreatments
org.biomage.Interface.
HasType
org.biomage.Interface.
HasTypes
org.biomage.Interface.
HasUnit
org.biomage.Interface.
HasValue
org.biomage.Interface.
HasWarningType
org.biomage.Interface.
HasZone
org.biomage.Interface.
HasZoneGroups
org.biomage.Interface.
HasZoneLayout
org.biomage.Interface.
HasZoneLocations
gov.nih.nci.caarray.services.hybridization.
HybridizationFileHandler
gov.nih.nci.caarray.services.fileparse2.arraydesign.test.
IAccess
gov.nih.nci.caarray.services.test.
InContainerTest
java.lang.Iterable<T>
java.util.Collection<E>
gov.nih.nci.caarray.services.util.jms.
JMSMessageCollection
(also extends java.io.Serializable)
gov.nih.nci.caarray.services.util.jms.
JMSMessageCollection
(also extends java.util.Collection<E>, java.io.Serializable)
gov.nih.nci.caarray.services.util.jms.
JMSMessageHandler
gov.nih.nci.caarray.services.util.file.
LineSplitter
java.util.Map<K,V>
org.biomage.tools.xmlutils.
MultiMap
gov.nih.nci.caarray.services.security.db.
SecurityDSConnectionUtil.CustomRowMap
gov.nih.nci.caarray.services.util.parse.
Notifiable
gov.nih.nci.caarray.services.util.parse.
ParserBeanPropertiesInterface
gov.nih.nci.caarray.services.fileparse.
ParsingDataMatrix
gov.nih.nci.caarray.services.fileparse.
ParsingDesignElement
gov.nih.nci.caarray.services.fileparse.
ParsingQuantitationType
org.biomage.tools.xmlutils.
PCData
gov.nih.nci.caarray.services.fileparse.
QuantitationTypeService
gov.nih.nci.caarray.services.security.test.
SecuredElementBuilder
gov.nih.nci.caarray.services.security.mageom.
SecuredElementIdUpdater
gov.nih.nci.caarray.services.security.intf.
SecuredElementItf
gov.nih.nci.caarray.services.security.mageom.
SecuredElementOrphanHandler
gov.nih.nci.caarray.services.security.intf.
SecurityServiceItf
java.io.Serializable
gov.nih.nci.caarray.services.util.jms.
JMSMessageCollection
(also extends java.util.Collection<E>)
gov.nih.nci.caarray.services.util.transaction.
TransactionHandler
gov.nih.nci.caarray.services.fileparse.test.usecases.
UseCase
gov.nih.nci.caarray.services.security.test.usecases.
UseCase
gov.nih.nci.caarray.services.test.usecases.
UseCase
gov.nih.nci.caarray.services.util.netcdf.test.usecases.
UseCase
org.biomage.tools.generate_dtd.
WriteDTDFile.CreateClassTransformer
gov.nih.nci.caarray.services.fileparse2.arraydesign.
ZoneMatcher
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
gov.nih.nci.caarray.services.arraydesign.
ArrayDesignType
gov.nih.nci.caarray.services.bioassaydata.descriptor.
ScaleEnum
gov.nih.nci.caarray.services.bioassaydata.descriptor.
QuantitationTypeDescriptor
gov.nih.nci.caarray.services.bioassaydata.descriptor.
DataTypeEnum
gov.nih.nci.caarray.services.bioassaydata.descriptor.
DataTableDescriptor
gov.nih.nci.caarray.services.bioassaydata.descriptor.
DataColumnDescriptor
gov.nih.nci.caarray.services.contact.
OrganizationDescriptor
org.biomage.BioAssayData.
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