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Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.arraydesign | |
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CompositeSequence
A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence. |
Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.arraydesign.loader | |
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CompositeSequence
A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence. |
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Feature
An intended position on an array. |
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Reporter
A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences. |
Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.fileparse | |
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DesignElement
An element of an array. |
Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.fileparse2 | |
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DesignElement
An element of an array. |
Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.util.netcdf | |
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DesignElement
An element of an array. |
Classes in org.biomage.DesignElement used by org.biomage.Array | |
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Feature
An intended position on an array. |
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Position
Specifies a position on an array. |
Classes in org.biomage.DesignElement used by org.biomage.ArrayDesign | |
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CompositeSequence
A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence. |
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Feature
An intended position on an array. |
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Reporter
A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences. |
Classes in org.biomage.DesignElement used by org.biomage.BioAssayData | |
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CompositeSequence
A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence. |
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DesignElement
An element of an array. |
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Feature
An intended position on an array. |
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Reporter
A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences. |
Classes in org.biomage.DesignElement used by org.biomage.Common | |
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DesignElement_package
The classes of this package are the contained classes of the ArrayDesign and describe through the DesignElements what is intended to be at each location of the Array. |
Classes in org.biomage.DesignElement used by org.biomage.DesignElement | |
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CompositeCompositeMap
A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence. |
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CompositePosition
The location in the compositeSequence target's sequence to which a source compositeSequence maps. |
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CompositeSequence
A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence. |
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DesignElement
An element of an array. |
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DesignElement_package.CompositeCompositeMap_list
Inner list class for holding multiple entries for attribute compositeCompositeMap. |
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DesignElement_package.CompositeSequence_list
Inner list class for holding multiple entries for attribute compositeSequence. |
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DesignElement_package.FeatureReporterMap_list
Inner list class for holding multiple entries for attribute featureReporterMap. |
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DesignElement_package.Reporter_list
Inner list class for holding multiple entries for attribute reporter. |
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DesignElement_package.ReporterCompositeMap_list
Inner list class for holding multiple entries for attribute reporterCompositeMap. |
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Feature
An intended position on an array. |
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FeatureInformation
As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter. |
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FeatureLocation
Specifies where a feature is located relative to a grid. |
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FeatureReporterMap
A FeatureReporterMap is the description of how source features are transformed into a target reporter. |
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MismatchInformation
Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence. |
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Position
Specifies a position on an array. |
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Reporter
A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences. |
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ReporterCompositeMap
A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences. |
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ReporterPosition
The location in the composite target's sequence to which a source reporter maps. |
Classes in org.biomage.DesignElement used by org.biomage.Interface | |
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CompositeCompositeMap
A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence. |
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CompositePosition
The location in the compositeSequence target's sequence to which a source compositeSequence maps. |
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CompositeSequence
A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence. |
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DesignElement
An element of an array. |
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Feature
An intended position on an array. |
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FeatureInformation
As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter. |
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FeatureLocation
Specifies where a feature is located relative to a grid. |
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FeatureReporterMap
A FeatureReporterMap is the description of how source features are transformed into a target reporter. |
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MismatchInformation
Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence. |
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Position
Specifies a position on an array. |
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Reporter
A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences. |
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ReporterCompositeMap
A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences. |
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ReporterPosition
The location in the composite target's sequence to which a source reporter maps. |
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