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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.BioAssay.Channel
public class Channel
A channel represents an independent acquisition scheme for the ImageAcquisition event, typically a wavelength.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasLabels |
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HasLabels.Labels_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
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HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
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HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected java.util.List |
labels
The compound used to label the extract. |
Fields inherited from class org.biomage.Common.Describable |
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security |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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Channel()
Default constructor. |
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Channel(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToLabels(Compound compound)
Method to add Compound to Labels_list |
void |
addToLabels(int position,
Compound compound)
Method to add Compound at position to Labels_list |
boolean |
emptyMAGEobject()
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Compound |
getFromLabels(int position)
Method to get Compound from Labels_list |
HasLabels.Labels_list |
getLabels()
Get method for labels |
java.lang.String |
getModelClassName()
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void |
removeElementAtFromLabels(int position)
Method to remove by position from Labels_list |
void |
removeFromLabels(Compound compound)
Method to remove first Compound from Labels_list |
void |
setAttributes(org.xml.sax.Attributes atts)
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void |
setLabels(HasLabels.Labels_list labels)
Set method for labels |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Identifiable |
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getIdentifier, getName, setIdentifier, setName, toString |
Methods inherited from class org.biomage.Common.Describable |
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addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.util.List labels
Constructor Detail |
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public Channel()
public Channel(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class Identifiable
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Identifiable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Identifiable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Identifiable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Identifiable
public void setLabels(HasLabels.Labels_list labels)
setLabels
in interface HasLabels
value
- to setpublic HasLabels.Labels_list getLabels()
getLabels
in interface HasLabels
public void addToLabels(Compound compound)
addToLabels
in interface HasLabels
public void addToLabels(int position, Compound compound)
addToLabels
in interface HasLabels
public Compound getFromLabels(int position)
getFromLabels
in interface HasLabels
public void removeElementAtFromLabels(int position)
removeElementAtFromLabels
in interface HasLabels
public void removeFromLabels(Compound compound)
removeFromLabels
in interface HasLabels
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