Uses of Package
org.biomage.BioAssayData

Packages that use org.biomage.BioAssayData
gov.nih.nci.caarray.services.bioassaydata   
gov.nih.nci.caarray.services.bioassaydata.descriptor   
gov.nih.nci.caarray.services.fileparse2   
gov.nih.nci.caarray.services.mageloader   
org.biomage.BioAssay   
org.biomage.BioAssayData   
org.biomage.Common   
org.biomage.DesignElement   
org.biomage.Experiment   
org.biomage.HigherLevelAnalysis   
org.biomage.Interface   
org.biomage.QuantitationType   
 

Classes in org.biomage.BioAssayData used by gov.nih.nci.caarray.services.bioassaydata
BioAssayData
          Represents the dataset created when the BioAssays are created.
SourceType
          Indicates the source of a BioAssayCube.
 

Classes in org.biomage.BioAssayData used by gov.nih.nci.caarray.services.bioassaydata.descriptor
SourceType
          Indicates the source of a BioAssayCube.
 

Classes in org.biomage.BioAssayData used by gov.nih.nci.caarray.services.fileparse2
BioAssayData
          Represents the dataset created when the BioAssays are created.
 

Classes in org.biomage.BioAssayData used by gov.nih.nci.caarray.services.mageloader
BioAssayData
          Represents the dataset created when the BioAssays are created.
 

Classes in org.biomage.BioAssayData used by org.biomage.BioAssay
BioAssayMap
          The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays.
DerivedBioAssayData
          The output of a transformation event.
MeasuredBioAssayData
          The data associated with the MeasuredBioAssay produced by FeatureExtraction.
 

Classes in org.biomage.BioAssayData used by org.biomage.BioAssayData
BioAssayData
          Represents the dataset created when the BioAssays are created.
BioAssayData_package.BioAssayData_list
          Inner list class for holding multiple entries for attribute bioAssayData.
BioAssayData_package.BioAssayDimension_list
          Inner list class for holding multiple entries for attribute bioAssayDimension.
BioAssayData_package.BioAssayMap_list
          Inner list class for holding multiple entries for attribute bioAssayMap.
BioAssayData_package.DesignElementDimension_list
          Inner list class for holding multiple entries for attribute designElementDimension.
BioAssayData_package.QuantitationTypeDimension_list
          Inner list class for holding multiple entries for attribute quantitationTypeDimension.
BioAssayData_package.QuantitationTypeMap_list
          Inner list class for holding multiple entries for attribute quantitationTypeMap.
BioAssayDimension
          An ordered list of bioAssays.
BioAssayMap
          The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays.
BioAssayMapping
          Container of the mappings of the input BioAssay dimensions to the output BioAssay dimension.
BioAssayTuple
          Transformed container to specify a BioAssay and the Design Elements and their data for that BioAssay.
BioDataCube.Order
          Inner class for the enumeration values that the attribute order can assume.
BioDataValues
          The actual values for the BioAssayCube.
DataExternal
          Transformed class to associate external data to the BioAssayDataCube
DataInternal
          Transformed class to associate whitespaced delimited data to the BioAssayDataCube
Datum
          Transformed container to hold a value.
DerivedBioAssayData
          The output of a transformation event.
DesignElementDimension
          An ordered list of designElements.
DesignElementMap
          A DesignElementMap is the description of how source DesignElements are transformed into a target DesignElement.
DesignElementMapping
          Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.
DesignElementTuple
          Transformed container to specify a DesignElement and QuantitationTypes for that Element.
QuantitationTypeDimension
          An ordered list of quantitationTypes.
QuantitationTypeMap
          A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType.
QuantitationTypeMapping
          Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.
QuantitationTypeTuple
          Transformed container to specify a Quantitation Type and the value for that Type.
SourceType
          Indicates the source of a BioAssayCube.
Transformation
          The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays.
 

Classes in org.biomage.BioAssayData used by org.biomage.Common
BioAssayData_package
          The classes defined here provide data and the information and annotation on the derivation of that data.
 

Classes in org.biomage.BioAssayData used by org.biomage.DesignElement
DesignElementMap
          A DesignElementMap is the description of how source DesignElements are transformed into a target DesignElement.
 

Classes in org.biomage.BioAssayData used by org.biomage.Experiment
BioAssayData
          Represents the dataset created when the BioAssays are created.
 

Classes in org.biomage.BioAssayData used by org.biomage.HigherLevelAnalysis
BioAssayData
          Represents the dataset created when the BioAssays are created.
BioAssayDimension
          An ordered list of bioAssays.
DesignElementDimension
          An ordered list of designElements.
QuantitationTypeDimension
          An ordered list of quantitationTypes.
 

Classes in org.biomage.BioAssayData used by org.biomage.Interface
BioAssayData
          Represents the dataset created when the BioAssays are created.
BioAssayDimension
          An ordered list of bioAssays.
BioAssayMap
          The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays.
BioAssayMapping
          Container of the mappings of the input BioAssay dimensions to the output BioAssay dimension.
BioAssayTuple
          Transformed container to specify a BioAssay and the Design Elements and their data for that BioAssay.
BioDataValues
          The actual values for the BioAssayCube.
DerivedBioAssayData
          The output of a transformation event.
DesignElementDimension
          An ordered list of designElements.
DesignElementMap
          A DesignElementMap is the description of how source DesignElements are transformed into a target DesignElement.
DesignElementMapping
          Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.
DesignElementTuple
          Transformed container to specify a DesignElement and QuantitationTypes for that Element.
MeasuredBioAssayData
          The data associated with the MeasuredBioAssay produced by FeatureExtraction.
QuantitationTypeDimension
          An ordered list of quantitationTypes.
QuantitationTypeMap
          A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType.
QuantitationTypeMapping
          Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.
QuantitationTypeTuple
          Transformed container to specify a Quantitation Type and the value for that Type.
Transformation
          The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays.
 

Classes in org.biomage.BioAssayData used by org.biomage.QuantitationType
QuantitationTypeMap
          A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType.