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java.lang.Objectgov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileHeaderParser
gov.nih.nci.caarray.services.fileparse2.parsers.MicroarrayTextFileHeaderParser
gov.nih.nci.caarray.services.fileparse2.arraydesign.ArrayDesignTextFileHeaderParser
gov.nih.nci.caarray.services.fileparse2.arraydesign.UCSFSpotFileHeaderParser
public final class UCSFSpotFileHeaderParser
Field Summary |
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Fields inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.MicroarrayTextFileHeaderParser |
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headerEndMarkerPattern_ |
Fields inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileHeaderParser |
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dataSetMapper_, header_, logger_ |
Constructor Summary | |
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UCSFSpotFileHeaderParser(DataSetMapper dataSetMapper)
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Method Summary | |
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void |
parse(SequenceInputFile inputFile)
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Methods inherited from class gov.nih.nci.caarray.services.fileparse2.arraydesign.ArrayDesignTextFileHeaderParser |
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addZoneLocation, addZoneLocation, getZoneGroup, removeZoneLocation, setZoneLayout, setZoneLayout |
Methods inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.MicroarrayTextFileHeaderParser |
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extractHeaderSection, getMatch, main, match, matchHeaderEndMarkerPattern, validate |
Methods inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileHeaderParser |
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getDataSetMapper, getHeader |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public UCSFSpotFileHeaderParser(DataSetMapper dataSetMapper)
dataSetMapper
- Method Detail |
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public void parse(SequenceInputFile inputFile) throws java.io.IOException
parse
in interface ArrayDesignFileHeaderParserItf
parse
in class MicroarrayTextFileHeaderParser
java.io.IOException
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