org.biomage.BioAssayData
Class DesignElementMapping

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.BioAssayData.DesignElementMapping
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasDesignElementMaps, HasPropertySets

public class DesignElementMapping
extends Extendable
implements java.io.Serializable, HasDesignElementMaps

Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDesignElementMaps
HasDesignElementMaps.DesignElementMaps_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
protected  java.util.List designElementMaps
          The maps for the DesignElements.
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
DesignElementMapping()
          Default constructor.
DesignElementMapping(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 void addToDesignElementMaps(DesignElementMap designElementMap)
          Method to add DesignElementMap to DesignElementMaps_list
 void addToDesignElementMaps(int position, DesignElementMap designElementMap)
          Method to add DesignElementMap at position to DesignElementMaps_list
 boolean emptyMAGEobject()
           
 HasDesignElementMaps.DesignElementMaps_list getDesignElementMaps()
          Get method for designElementMaps
 DesignElementMap getFromDesignElementMaps(int position)
          Method to get DesignElementMap from DesignElementMaps_list
 java.lang.String getModelClassName()
           
 void removeElementAtFromDesignElementMaps(int position)
          Method to remove by position from DesignElementMaps_list
 void removeFromDesignElementMaps(DesignElementMap designElementMap)
          Method to remove first DesignElementMap from DesignElementMaps_list
 void setDesignElementMaps(HasDesignElementMaps.DesignElementMaps_list designElementMaps)
          Set method for designElementMaps
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

designElementMaps

protected java.util.List designElementMaps
The maps for the DesignElements.

Constructor Detail

DesignElementMapping

public DesignElementMapping()
Default constructor.


DesignElementMapping

public DesignElementMapping(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class Extendable
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class Extendable
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class Extendable
Throws:
java.io.IOException

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class Extendable

setDesignElementMaps

public void setDesignElementMaps(HasDesignElementMaps.DesignElementMaps_list designElementMaps)
Set method for designElementMaps

Specified by:
setDesignElementMaps in interface HasDesignElementMaps
Parameters:
value - to set

getDesignElementMaps

public HasDesignElementMaps.DesignElementMaps_list getDesignElementMaps()
Get method for designElementMaps

Specified by:
getDesignElementMaps in interface HasDesignElementMaps
Returns:
value of the attribute

addToDesignElementMaps

public void addToDesignElementMaps(DesignElementMap designElementMap)
Method to add DesignElementMap to DesignElementMaps_list

Specified by:
addToDesignElementMaps in interface HasDesignElementMaps

addToDesignElementMaps

public void addToDesignElementMaps(int position,
                                   DesignElementMap designElementMap)
Method to add DesignElementMap at position to DesignElementMaps_list

Specified by:
addToDesignElementMaps in interface HasDesignElementMaps

getFromDesignElementMaps

public DesignElementMap getFromDesignElementMaps(int position)
Method to get DesignElementMap from DesignElementMaps_list

Specified by:
getFromDesignElementMaps in interface HasDesignElementMaps

removeElementAtFromDesignElementMaps

public void removeElementAtFromDesignElementMaps(int position)
Method to remove by position from DesignElementMaps_list

Specified by:
removeElementAtFromDesignElementMaps in interface HasDesignElementMaps

removeFromDesignElementMaps

public void removeFromDesignElementMaps(DesignElementMap designElementMap)
Method to remove first DesignElementMap from DesignElementMaps_list

Specified by:
removeFromDesignElementMaps in interface HasDesignElementMaps