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java.lang.Objectgov.nih.nci.caarray.common.delegate.BioMaterialManagerDelegate
public final class BioMaterialManagerDelegate
Constructor Summary | |
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BioMaterialManagerDelegate()
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Method Summary | |
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long |
addBioSample(BioSampleData bioSampleData)
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long |
addBioSource(BioSourceData bioSourceData,
VocabData[] characteristics)
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long |
addTreatmentToBioSample(long bioSampleId,
TreatmentData treatmentData)
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long |
addTreatmentToLabeledExtract(long labeledExtractId,
TreatmentData treatmentData)
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long |
copyLabeledExtract(long labeledExtractId,
java.lang.String newLabeledExtractName)
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void |
deleteBioSample(long bioMaterialId)
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void |
deleteBioSource(long bioMaterialId)
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void |
deleteLabeledExtract(long bioMaterialId)
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void |
deleteTreatmentFromBioMaterial(long bioMaterialId,
long treatmentId)
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long |
duplicateBioSource(long sourceBioSourceId,
java.lang.String dupBiosourceName)
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long |
duplicateLabelExtract(long sourceLabelExtractId,
java.lang.String dupLabelExtractName)
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BioMaterialData |
getBioMaterial(long id)
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BioSampleData |
getBioSample(long id)
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BioSampleView |
getBioSampleView(long id)
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BioSourceData |
getBioSource(long id)
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BioSourceView |
getBioSourceView(long id)
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LabeledExtractData |
getLabeledExtract(long id)
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LabeledExtractView |
getLabeledExtractView(long id)
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TreatmentData |
getTreatment(long id)
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TreatmentData[] |
getTreatments(long bioMaterialId)
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long |
labelBioSample(TreatmentData labelingTreatment,
LabeledExtractData extractData)
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long |
poolBioSamples(TreatmentData poolingTreatment,
BioSampleData outputBioSample)
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BioMaterialDesc[] |
searchBioMaterials(BioMaterialSearchCriteria criteria)
Deprecated. No uses appear to be found, possible dead code |
BioSampleDesc[] |
searchBioSamples(BioMaterialSearchCriteria criteria)
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BioSampleDesc[] |
searchBioSamples(BioMaterialSearchCriteria criteria,
boolean ownerOnly)
deprecated No uses appear to be found, possible dead code |
BioSampleDesc[] |
searchBioSamples(BioMaterialSearchCriteria criteria,
int pageSize,
int pageNum)
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BioSampleDesc[] |
searchBioSamplesShallow(BioMaterialSearchCriteria criteria)
Perform a shallow search (used typically to populate pull-down lists in UI) |
BioSampleDesc[] |
searchBioSamplesShallow(BioMaterialSearchCriteria criteria,
boolean ownerOnly)
Perform a shallow search (used typically to populate pull-down lists in UI) |
BioSourceDesc[] |
searchBioSources(BioMaterialSearchCriteria criteria)
|
BioSourceDesc[] |
searchBioSources(BioMaterialSearchCriteria criteria,
boolean ownerOnly)
Deprecated. No uses appear to be found, possible dead code |
BioSourceDesc[] |
searchBioSources(BioMaterialSearchCriteria criteria,
int pageSize,
int pageNum)
|
BioSourceDesc[] |
searchBioSourcesShallow(BioMaterialSearchCriteria criteria)
Perform a shallow search (used typically to populate pull-down lists in UI) |
BioSourceDesc[] |
searchBioSourcesShallow(BioMaterialSearchCriteria criteria,
boolean ownerOnly)
Perform a shallow search (used typically to populate pull-down lists in UI) |
LabeledExtractDesc[] |
searchLabeledExtracts(BioMaterialSearchCriteria criteria)
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LabeledExtractDesc[] |
searchLabeledExtracts(BioMaterialSearchCriteria criteria,
int pageSize,
int pageNum)
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LabeledExtractDesc[] |
searchLabeledExtractsShallow(BioMaterialSearchCriteria criteria)
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long[] |
splitBioSample(TreatmentData splittingTreatment,
SplitBioSampleData[] outputBioSamples)
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long |
treatBioMaterial(TreatmentData[] treatmentData,
BioMaterialData outputBioMaterialData)
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long |
treatBioMaterial(TreatmentData treatmentData,
BioMaterialData outputBioMaterialData)
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void |
updateBioMaterialCharacteristics(long bioMaterialId,
VocabData[] characteristics)
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void |
updateBioSample(BioSampleData bioSampleData)
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void |
updateBioSource(BioSourceData bioSourceData)
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void |
updateLabeledExtract(TreatmentData labelingTreatment,
LabeledExtractData extractData)
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void |
updateTreatment(TreatmentData treatmentData)
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public BioMaterialManagerDelegate()
Method Detail |
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public long addBioSample(BioSampleData bioSampleData) throws java.lang.Exception
java.lang.Exception
public long addBioSource(BioSourceData bioSourceData, VocabData[] characteristics) throws java.lang.Exception
java.lang.Exception
public void deleteTreatmentFromBioMaterial(long bioMaterialId, long treatmentId) throws java.lang.Exception
java.lang.Exception
public void deleteBioSample(long bioMaterialId) throws java.lang.Exception
java.lang.Exception
public void deleteBioSource(long bioMaterialId) throws java.lang.Exception
java.lang.Exception
public void deleteLabeledExtract(long bioMaterialId) throws java.lang.Exception
java.lang.Exception
public long duplicateBioSource(long sourceBioSourceId, java.lang.String dupBiosourceName) throws java.lang.Exception
java.lang.Exception
public long duplicateLabelExtract(long sourceLabelExtractId, java.lang.String dupLabelExtractName) throws java.lang.Exception
java.lang.Exception
public BioSampleData getBioSample(long id) throws java.lang.Exception
java.lang.Exception
public TreatmentData getTreatment(long id) throws java.lang.Exception
java.lang.Exception
public BioSampleView getBioSampleView(long id) throws java.lang.Exception
java.lang.Exception
public BioMaterialData getBioMaterial(long id) throws java.lang.Exception
java.lang.Exception
public BioSourceData getBioSource(long id) throws java.lang.Exception
java.lang.Exception
public BioSourceView getBioSourceView(long id) throws java.lang.Exception
id
-
AccessDeniedException
ObjectNotExistException
GeneralException
java.lang.Exception
public LabeledExtractData getLabeledExtract(long id) throws java.lang.Exception
java.lang.Exception
public LabeledExtractView getLabeledExtractView(long id) throws java.lang.Exception
java.lang.Exception
public long labelBioSample(TreatmentData labelingTreatment, LabeledExtractData extractData) throws java.lang.Exception
java.lang.Exception
public long poolBioSamples(TreatmentData poolingTreatment, BioSampleData outputBioSample) throws java.lang.Exception
java.lang.Exception
public BioMaterialDesc[] searchBioMaterials(BioMaterialSearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public BioSampleDesc[] searchBioSamplesShallow(BioMaterialSearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public BioSampleDesc[] searchBioSamplesShallow(BioMaterialSearchCriteria criteria, boolean ownerOnly) throws java.lang.Exception
java.lang.Exception
public BioSampleDesc[] searchBioSamples(BioMaterialSearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public BioSampleDesc[] searchBioSamples(BioMaterialSearchCriteria criteria, boolean ownerOnly) throws java.lang.Exception
java.lang.Exception
public BioSampleDesc[] searchBioSamples(BioMaterialSearchCriteria criteria, int pageSize, int pageNum) throws java.lang.Exception
java.lang.Exception
public BioSourceDesc[] searchBioSources(BioMaterialSearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public BioSourceDesc[] searchBioSourcesShallow(BioMaterialSearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public BioSourceDesc[] searchBioSourcesShallow(BioMaterialSearchCriteria criteria, boolean ownerOnly) throws java.lang.Exception
java.lang.Exception
public BioSourceDesc[] searchBioSources(BioMaterialSearchCriteria criteria, boolean ownerOnly) throws java.lang.Exception
java.lang.Exception
public BioSourceDesc[] searchBioSources(BioMaterialSearchCriteria criteria, int pageSize, int pageNum) throws java.lang.Exception
java.lang.Exception
public LabeledExtractDesc[] searchLabeledExtracts(BioMaterialSearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public LabeledExtractDesc[] searchLabeledExtractsShallow(BioMaterialSearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public LabeledExtractDesc[] searchLabeledExtracts(BioMaterialSearchCriteria criteria, int pageSize, int pageNum) throws java.lang.Exception
java.lang.Exception
public long[] splitBioSample(TreatmentData splittingTreatment, SplitBioSampleData[] outputBioSamples) throws java.lang.Exception
java.lang.Exception
public TreatmentData[] getTreatments(long bioMaterialId) throws java.lang.Exception
java.lang.Exception
public long treatBioMaterial(TreatmentData treatmentData, BioMaterialData outputBioMaterialData) throws java.lang.Exception
java.lang.Exception
public long treatBioMaterial(TreatmentData[] treatmentData, BioMaterialData outputBioMaterialData) throws java.lang.Exception
java.lang.Exception
public void updateBioMaterialCharacteristics(long bioMaterialId, VocabData[] characteristics) throws java.lang.Exception
java.lang.Exception
public void updateBioSample(BioSampleData bioSampleData) throws java.lang.Exception
java.lang.Exception
public void updateTreatment(TreatmentData treatmentData) throws java.lang.Exception
treatmentData
-
AccessDeniedException
ObjectNotExistException
GeneralException
java.lang.Exception
public void updateBioSource(BioSourceData bioSourceData) throws java.lang.Exception
java.lang.Exception
public void updateLabeledExtract(TreatmentData labelingTreatment, LabeledExtractData extractData) throws java.lang.Exception
java.lang.Exception
public long addTreatmentToBioSample(long bioSampleId, TreatmentData treatmentData) throws java.lang.Exception
bioSampleId
- treatmentData
-
AccessDeniedException
ObjectNotExistException
InsertObjectException
GeneralException
java.lang.Exception
public long addTreatmentToLabeledExtract(long labeledExtractId, TreatmentData treatmentData) throws java.lang.Exception
java.lang.Exception
public long copyLabeledExtract(long labeledExtractId, java.lang.String newLabeledExtractName) throws java.lang.Exception
java.lang.Exception
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