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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.BioAssayData.BioDataValues
org.biomage.BioAssayData.BioDataTuples
public class BioDataTuples
A relational, tuple representation of the data.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasBioAssayTupleData |
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HasBioAssayTupleData.BioAssayTuples_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary |
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Fields inherited from class org.biomage.BioAssayData.BioDataValues |
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ojbConcreteClass |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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BioDataTuples()
Default constructor. |
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BioDataTuples(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToBioAssayTuples(BioAssayTuple bioAssayTuple)
Method to add BioAssayTuple to BioAssayTuples_list |
void |
addToBioAssayTuples(int position,
BioAssayTuple bioAssayTuple)
Method to add BioAssayTuple at position to BioAssayTuples_list |
boolean |
emptyMAGEobject()
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HasBioAssayTupleData.BioAssayTuples_list |
getBioAssayTuples()
Get method for bioAssayTuples |
BioAssayTuple |
getFromBioAssayTuples(int position)
Method to get BioAssayTuple from BioAssayTuples_list |
java.lang.String |
getModelClassName()
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void |
removeElementAtFromBioAssayTuples(int position)
Method to remove by position from BioAssayTuples_list |
void |
removeFromBioAssayTuples(BioAssayTuple bioAssayTuple)
Method to remove first BioAssayTuple from BioAssayTuples_list |
void |
setBioAssayTuples(HasBioAssayTupleData.BioAssayTuples_list bioAssayTuples)
Set method for bioAssayTuples |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public BioDataTuples()
public BioDataTuples(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class BioDataValues
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class BioDataValues
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class BioDataValues
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class BioDataValues
public void setBioAssayTuples(HasBioAssayTupleData.BioAssayTuples_list bioAssayTuples)
setBioAssayTuples
in interface HasBioAssayTupleData
value
- to setpublic HasBioAssayTupleData.BioAssayTuples_list getBioAssayTuples()
getBioAssayTuples
in interface HasBioAssayTupleData
public void addToBioAssayTuples(BioAssayTuple bioAssayTuple)
addToBioAssayTuples
in interface HasBioAssayTupleData
public void addToBioAssayTuples(int position, BioAssayTuple bioAssayTuple)
addToBioAssayTuples
in interface HasBioAssayTupleData
public BioAssayTuple getFromBioAssayTuples(int position)
getFromBioAssayTuples
in interface HasBioAssayTupleData
public void removeElementAtFromBioAssayTuples(int position)
removeElementAtFromBioAssayTuples
in interface HasBioAssayTupleData
public void removeFromBioAssayTuples(BioAssayTuple bioAssayTuple)
removeFromBioAssayTuples
in interface HasBioAssayTupleData
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