Uses of Class
org.biomage.BioSequence.SequencePosition

Packages that use SequencePosition
org.biomage.BioSequence   
org.biomage.DesignElement   
org.biomage.Interface   
 

Uses of SequencePosition in org.biomage.BioSequence
 

Fields in org.biomage.BioSequence declared as SequencePosition
protected  SequencePosition SeqFeatureLocation.coordinate
          At which base pairs or amino acid this SeqFeature begins and ends.
 

Methods in org.biomage.BioSequence that return SequencePosition
 SequencePosition SeqFeatureLocation.getCoordinate()
          Get method for coordinate
 

Methods in org.biomage.BioSequence with parameters of type SequencePosition
 void SeqFeatureLocation.setCoordinate(SequencePosition coordinate)
          Set method for coordinate
 

Uses of SequencePosition in org.biomage.DesignElement
 

Subclasses of SequencePosition in org.biomage.DesignElement
 class CompositePosition
          The location in the compositeSequence target's sequence to which a source compositeSequence maps.
 class ReporterPosition
          The location in the composite target's sequence to which a source reporter maps.
 

Uses of SequencePosition in org.biomage.Interface
 

Methods in org.biomage.Interface that return SequencePosition
 SequencePosition HasCoordinate.getCoordinate()
          Get method for coordinate
 

Methods in org.biomage.Interface with parameters of type SequencePosition
 void HasCoordinate.setCoordinate(SequencePosition coordinate)
          Set method for coordinate