gov.nih.nci.caarray.services.fileparse2.arraydesign
Class GenePixGALFileHeaderParser

java.lang.Object
  extended by gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileHeaderParser
      extended by gov.nih.nci.caarray.services.fileparse2.parsers.MicroarrayTextFileHeaderParser
          extended by gov.nih.nci.caarray.services.fileparse2.arraydesign.ArrayDesignTextFileHeaderParser
              extended by gov.nih.nci.caarray.services.fileparse2.arraydesign.GenePixGALFileHeaderParser
All Implemented Interfaces:
ArrayDesignFileHeaderParserItf

public final class GenePixGALFileHeaderParser
extends ArrayDesignTextFileHeaderParser

Author:
TranP

Field Summary
 
Fields inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.MicroarrayTextFileHeaderParser
headerEndMarkerPattern_
 
Fields inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileHeaderParser
dataSetMapper_, header_, logger_
 
Constructor Summary
GenePixGALFileHeaderParser(DataSetMapper dataSetMapper)
           
GenePixGALFileHeaderParser(DataSetMapper dataSetMapper, java.lang.String headerEndMarkerPattern)
           
 
Method Summary
 void parse(SequenceInputFile inputFile)
           
 
Methods inherited from class gov.nih.nci.caarray.services.fileparse2.arraydesign.ArrayDesignTextFileHeaderParser
addZoneLocation, addZoneLocation, getZoneGroup, removeZoneLocation, setZoneLayout, setZoneLayout
 
Methods inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.MicroarrayTextFileHeaderParser
extractHeaderSection, getMatch, main, match, matchHeaderEndMarkerPattern, validate
 
Methods inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileHeaderParser
getDataSetMapper, getHeader
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GenePixGALFileHeaderParser

public GenePixGALFileHeaderParser(DataSetMapper dataSetMapper)
Parameters:
dataSetMapper -

GenePixGALFileHeaderParser

public GenePixGALFileHeaderParser(DataSetMapper dataSetMapper,
                                  java.lang.String headerEndMarkerPattern)
Parameters:
dataSetMapper -
headerEndMarkerPattern -
Method Detail

parse

public void parse(SequenceInputFile inputFile)
           throws java.io.IOException
Specified by:
parse in interface ArrayDesignFileHeaderParserItf
Overrides:
parse in class MicroarrayTextFileHeaderParser
Throws:
java.io.IOException