Uses of Class
org.biomage.ArrayDesign.Zone

Packages that use Zone
gov.nih.nci.caarray.services.fileparse2.arraydesign   
gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers   
org.biomage.Array   
org.biomage.ArrayDesign   
org.biomage.DesignElement   
org.biomage.Interface   
 

Uses of Zone in gov.nih.nci.caarray.services.fileparse2.arraydesign
 

Methods in gov.nih.nci.caarray.services.fileparse2.arraydesign that return Zone
 Zone ZoneMatcher.matchZone(java.util.Map zoneMappings, ParsedFeature parsedFeature)
           
 

Methods in gov.nih.nci.caarray.services.fileparse2.arraydesign with parameters of type Zone
 void ArrayDesignTextFileHeaderParser.addZoneLocation(Zone zone)
           
 void ArrayDesignFileHeaderParserItf.addZoneLocation(Zone zone)
           
 void ArrayDesignFileHeaderParser.addZoneLocation(Zone zone)
           
 java.util.Map ZoneMatcher.setupZoneMappings(Zone[] zones)
           
 

Uses of Zone in gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers
 

Methods in gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers that return Zone
 Zone ZoneLocationZoneMatcher.matchZone(java.util.Map zoneMappings, ParsedFeature parsedFeature)
           
 Zone UCSFSpotZoneMatcher.matchZone(java.util.Map zoneMappings, ParsedFeature parsedFeature)
           
 Zone GenePixGALZoneMatcher.matchZone(java.util.Map zoneMappings, ParsedFeature parsedFeature)
           
 Zone DefaultZoneMatcher.matchZone(java.util.Map zoneMappings, ParsedFeature parsedFeature)
           
 

Methods in gov.nih.nci.caarray.services.fileparse2.arraydesign.zonematchers with parameters of type Zone
 java.util.Map ZoneLocationZoneMatcher.setupZoneMappings(Zone[] zones)
           
 java.util.Map UCSFSpotZoneMatcher.setupZoneMappings(Zone[] zones)
           
 java.util.Map DefaultZoneMatcher.setupZoneMappings(Zone[] zones)
           
 

Uses of Zone in org.biomage.Array
 

Fields in org.biomage.Array declared as Zone
protected  Zone ZoneDefect.zone
          Reference to the Zone that was misprinted.
 

Methods in org.biomage.Array that return Zone
 Zone ZoneDefect.getZone()
          Get method for zone
 

Methods in org.biomage.Array with parameters of type Zone
 void ZoneDefect.setZone(Zone zone)
          Set method for zone
 

Uses of Zone in org.biomage.ArrayDesign
 

Methods in org.biomage.ArrayDesign that return Zone
 Zone ZoneGroup.getFromZoneLocations(int position)
          Method to get Zone from ZoneLocations_list
 

Methods in org.biomage.ArrayDesign with parameters of type Zone
 void ZoneGroup.addToZoneLocations(int position, Zone zone)
          Method to add Zone at position to ZoneLocations_list
 void ZoneGroup.addToZoneLocations(Zone zone)
          Method to add Zone to ZoneLocations_list
 void ZoneGroup.removeFromZoneLocations(Zone zone)
          Method to remove first Zone from ZoneLocations_list
 

Uses of Zone in org.biomage.DesignElement
 

Fields in org.biomage.DesignElement declared as Zone
protected  Zone Feature.zone
          A reference to the zone this feature is in.
 

Methods in org.biomage.DesignElement that return Zone
 Zone Feature.getZone()
          Get method for zone
 

Methods in org.biomage.DesignElement with parameters of type Zone
 void Feature.setZone(Zone zone)
          Set method for zone
 

Uses of Zone in org.biomage.Interface
 

Methods in org.biomage.Interface that return Zone
 Zone HasZoneLocations.getFromZoneLocations(int position)
          Method to get Zone from ZoneLocations_list
 Zone HasZone.getZone()
          Get method for zone
 

Methods in org.biomage.Interface with parameters of type Zone
 void HasZoneLocations.addToZoneLocations(int position, Zone zone)
          Method to add Zone at position to ZoneLocations_list
 void HasZoneLocations.addToZoneLocations(Zone zone)
          Method to add Zone to ZoneLocations_list
 void HasZoneLocations.removeFromZoneLocations(Zone zone)
          Method to remove first Zone from ZoneLocations_list
 void HasZone.setZone(Zone zone)
          Set method for zone