org.biomage.ArrayDesign
Class Zone

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.Common.Describable
          extended by org.biomage.Common.Identifiable
              extended by org.biomage.ArrayDesign.Zone
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasAuditTrail, HasDescriptions, HasDistanceUnit, HasPropertySets, HasSecurity

public class Zone
extends Identifiable
implements java.io.Serializable, HasDistanceUnit

Specifies the location of a zone on an array.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail
HasAuditTrail.AuditTrail_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions
HasDescriptions.Descriptions_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
protected  DistanceUnit distanceUnit
          Unit for the Zone attributes.
 
Fields inherited from class org.biomage.Common.Describable
security
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
Zone()
          Default constructor.
Zone(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 boolean emptyMAGEobject()
           
 java.lang.Integer getColumn()
          Get method for column
 DistanceUnit getDistanceUnit()
          Get method for distanceUnit
 java.lang.Float getLowerRightX()
          Get method for lowerRightX
 java.lang.Float getLowerRightY()
          Get method for lowerRightY
 java.lang.String getModelClassName()
           
 java.lang.Integer getRow()
          Get method for row
 java.lang.Float getUpperLeftX()
          Get method for upperLeftX
 java.lang.Float getUpperLeftY()
          Get method for upperLeftY
 void setAttributes(org.xml.sax.Attributes atts)
           
 void setColumn(java.lang.Integer column)
          Set method for column
 void setDistanceUnit(DistanceUnit distanceUnit)
          Set method for distanceUnit
 void setLowerRightX(java.lang.Float lowerRightX)
          Set method for lowerRightX
 void setLowerRightY(java.lang.Float lowerRightY)
          Set method for lowerRightY
 void setRow(java.lang.Integer row)
          Set method for row
 void setUpperLeftX(java.lang.Float upperLeftX)
          Set method for upperLeftX
 void setUpperLeftY(java.lang.Float upperLeftY)
          Set method for upperLeftY
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.Common.Identifiable
getIdentifier, getName, setIdentifier, setName, toString
 
Methods inherited from class org.biomage.Common.Describable
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

distanceUnit

protected DistanceUnit distanceUnit
Unit for the Zone attributes.

Constructor Detail

Zone

public Zone()
Default constructor.


Zone

public Zone(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

setAttributes

public void setAttributes(org.xml.sax.Attributes atts)
Overrides:
setAttributes in class Identifiable

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class Identifiable
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class Identifiable
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class Identifiable
Throws:
java.io.IOException

setRow

public void setRow(java.lang.Integer row)
Set method for row

Parameters:
value - to set

getRow

public java.lang.Integer getRow()
Get method for row

Returns:
value of the attribute

setColumn

public void setColumn(java.lang.Integer column)
Set method for column

Parameters:
value - to set

getColumn

public java.lang.Integer getColumn()
Get method for column

Returns:
value of the attribute

setUpperLeftX

public void setUpperLeftX(java.lang.Float upperLeftX)
Set method for upperLeftX

Parameters:
value - to set

getUpperLeftX

public java.lang.Float getUpperLeftX()
Get method for upperLeftX

Returns:
value of the attribute

setUpperLeftY

public void setUpperLeftY(java.lang.Float upperLeftY)
Set method for upperLeftY

Parameters:
value - to set

getUpperLeftY

public java.lang.Float getUpperLeftY()
Get method for upperLeftY

Returns:
value of the attribute

setLowerRightX

public void setLowerRightX(java.lang.Float lowerRightX)
Set method for lowerRightX

Parameters:
value - to set

getLowerRightX

public java.lang.Float getLowerRightX()
Get method for lowerRightX

Returns:
value of the attribute

setLowerRightY

public void setLowerRightY(java.lang.Float lowerRightY)
Set method for lowerRightY

Parameters:
value - to set

getLowerRightY

public java.lang.Float getLowerRightY()
Get method for lowerRightY

Returns:
value of the attribute

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class Identifiable

setDistanceUnit

public void setDistanceUnit(DistanceUnit distanceUnit)
Set method for distanceUnit

Specified by:
setDistanceUnit in interface HasDistanceUnit
Parameters:
value - to set

getDistanceUnit

public DistanceUnit getDistanceUnit()
Get method for distanceUnit

Specified by:
getDistanceUnit in interface HasDistanceUnit
Returns:
value of the attribute