org.biomage.BioAssayData
Class QuantitationTypeTuple

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.BioAssayData.QuantitationTypeTuple
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasPropertySets

public class QuantitationTypeTuple
extends Extendable
implements java.io.Serializable

Transformed container to specify a Quantitation Type and the value for that Type.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
protected  QuantitationType quantitationType
          The QuantitationType associated with the value of the BioAssayDatum.
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
QuantitationTypeTuple()
          Default constructor.
QuantitationTypeTuple(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 boolean emptyMAGEobject()
           
 Datum getDatum()
          Get method for datum
 java.lang.String getModelClassName()
           
 QuantitationType getQuantitationType()
          Get method for quantitationType
 void setDatum(Datum datum)
          Set method for datum
 void setQuantitationType(QuantitationType quantitationType)
          Set method for quantitationType
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

quantitationType

protected QuantitationType quantitationType
The QuantitationType associated with the value of the BioAssayDatum.

Constructor Detail

QuantitationTypeTuple

public QuantitationTypeTuple()
Default constructor.


QuantitationTypeTuple

public QuantitationTypeTuple(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class Extendable
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class Extendable
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class Extendable
Throws:
java.io.IOException

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class Extendable

setQuantitationType

public void setQuantitationType(QuantitationType quantitationType)
Set method for quantitationType

Parameters:
value - to set

getQuantitationType

public QuantitationType getQuantitationType()
Get method for quantitationType

Returns:
value of the attribute

setDatum

public void setDatum(Datum datum)
Set method for datum

Parameters:
value - to set

getDatum

public Datum getDatum()
Get method for datum

Returns:
value of the attribute