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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.BioAssayData.DesignElementDimension
org.biomage.BioAssayData.FeatureDimension
public class FeatureDimension
Specialized DesignElementDimension to hold Features.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasContainedFeatures |
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HasContainedFeatures.ContainedFeatures_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
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HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
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HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected java.util.List |
containedFeatures
The features for this dimension. |
Fields inherited from class org.biomage.BioAssayData.DesignElementDimension |
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ojbConcreteClass |
Fields inherited from class org.biomage.Common.Describable |
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security |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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FeatureDimension()
Default constructor. |
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FeatureDimension(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToContainedFeatures(Feature feature)
Method to add Feature to ContainedFeatures_list |
void |
addToContainedFeatures(int position,
Feature feature)
Method to add Feature at position to ContainedFeatures_list |
boolean |
emptyMAGEobject()
|
HasContainedFeatures.ContainedFeatures_list |
getContainedFeatures()
Get method for containedFeatures |
Feature |
getFromContainedFeatures(int position)
Method to get Feature from ContainedFeatures_list |
java.lang.String |
getModelClassName()
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void |
removeElementAtFromContainedFeatures(int position)
Method to remove by position from ContainedFeatures_list |
void |
removeFromContainedFeatures(Feature feature)
Method to remove first Feature from ContainedFeatures_list |
void |
setAttributes(org.xml.sax.Attributes atts)
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void |
setContainedFeatures(HasContainedFeatures.ContainedFeatures_list containedFeatures)
Set method for containedFeatures |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Identifiable |
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getIdentifier, getName, setIdentifier, setName, toString |
Methods inherited from class org.biomage.Common.Describable |
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addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.util.List containedFeatures
Constructor Detail |
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public FeatureDimension()
public FeatureDimension(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class DesignElementDimension
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class DesignElementDimension
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class DesignElementDimension
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class DesignElementDimension
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class DesignElementDimension
public void setContainedFeatures(HasContainedFeatures.ContainedFeatures_list containedFeatures)
setContainedFeatures
in interface HasContainedFeatures
value
- to setpublic HasContainedFeatures.ContainedFeatures_list getContainedFeatures()
getContainedFeatures
in interface HasContainedFeatures
public void addToContainedFeatures(Feature feature)
addToContainedFeatures
in interface HasContainedFeatures
public void addToContainedFeatures(int position, Feature feature)
addToContainedFeatures
in interface HasContainedFeatures
public Feature getFromContainedFeatures(int position)
getFromContainedFeatures
in interface HasContainedFeatures
public void removeElementAtFromContainedFeatures(int position)
removeElementAtFromContainedFeatures
in interface HasContainedFeatures
public void removeFromContainedFeatures(Feature feature)
removeFromContainedFeatures
in interface HasContainedFeatures
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