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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.HigherLevelAnalysis.NodeValue
public class NodeValue
A value associated with the Node that can rank it in relation to the other nodes produced by the clustering algorithm.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected OntologyEntry |
dataType
The data type of the any element. |
protected OntologyEntry |
scale
The scale (linear, log10, ln, etc.) of the value. |
protected OntologyEntry |
type
The type of value, distance, etc. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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NodeValue()
Default constructor. |
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NodeValue(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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boolean |
emptyMAGEobject()
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OntologyEntry |
getDataType()
Get method for dataType |
java.lang.String |
getModelClassName()
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java.lang.String |
getName()
Get method for name |
OntologyEntry |
getScale()
Get method for scale |
OntologyEntry |
getType()
Get method for type |
java.lang.Object |
getValue()
Get method for value |
void |
setDataType(OntologyEntry dataType)
Set method for dataType |
void |
setName(java.lang.String name)
Set method for name |
void |
setScale(OntologyEntry scale)
Set method for scale |
void |
setType(OntologyEntry type)
Set method for type |
void |
setValue(java.lang.Object value)
Set method for value |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected OntologyEntry type
protected OntologyEntry scale
protected OntologyEntry dataType
Constructor Detail |
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public NodeValue()
public NodeValue(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public void setName(java.lang.String name)
value
- to setpublic java.lang.String getName()
public void setValue(java.lang.Object value)
value
- to setpublic java.lang.Object getValue()
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setType(OntologyEntry type)
setType
in interface HasType
value
- to setpublic OntologyEntry getType()
getType
in interface HasType
public void setScale(OntologyEntry scale)
setScale
in interface HasScale
value
- to setpublic OntologyEntry getScale()
getScale
in interface HasScale
public void setDataType(OntologyEntry dataType)
setDataType
in interface HasDataType
value
- to setpublic OntologyEntry getDataType()
getDataType
in interface HasDataType
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