gov.nih.nci.caarray.services.fileparse2.parsers.test
Class ParsingTest
java.lang.Object
junit.framework.Assert
junit.framework.TestCase
gov.nih.nci.caarray.services.fileparse2.parsers.test.ParsingTest
- All Implemented Interfaces:
- junit.framework.Test
public class ParsingTest
- extends junit.framework.TestCase
Testing caArray's EJB by logging in the application with a test account.
For the login, you must configure on the command with:
-Djava.security.auth.login.config=[jboss-home]/client/auth.conf
- Author:
- tranp
Methods inherited from class junit.framework.TestCase |
countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString |
Methods inherited from class junit.framework.Assert |
assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
ParsingTest
public ParsingTest()
ParsingTest
public ParsingTest(java.lang.String arg0)
- Parameters:
arg0
-
main
public static void main(java.lang.String[] args)
suite
public static junit.framework.Test suite()
setUp
public void setUp()
throws java.lang.Exception
- Overrides:
setUp
in class junit.framework.TestCase
- Throws:
java.lang.Exception
testParseCHPDev
public void testParseCHPDev()
throws java.lang.Exception
- Throws:
java.lang.Exception
testParseGPRFromUCSFSpotDev
public void testParseGPRFromUCSFSpotDev()
throws java.lang.Exception
- Throws:
java.lang.Exception
testParseImaGeneDev
public void testParseImaGeneDev()
throws java.lang.Exception
- Throws:
java.lang.Exception
testParseGPRDev2
public void testParseGPRDev2()
throws java.lang.Exception
- This test tests two cases:
1. Mapping of quantitation names in quantitationNames.properties.
2. Invalid column name and rollback
The tests use Xiaopeng's GPR file that has column name "Rgn Rē (635/532)".
For case 1, that column name is converted to "Rgn R2 635/532"
as specified in quantificationName.properties and the parsing succeeded
For case2, remove this mapping from quantificationName.properties and
an exception is thrown with message "column name Rgn R2 (635/532) not found"
and upload annotations are rolled back.
- Throws:
java.lang.Exception
testParseGPRDev
public void testParseGPRDev()
throws java.lang.Exception
- Throws:
java.lang.Exception
testGetHyb
public void testGetHyb()
throws java.lang.Exception
- Throws:
java.lang.Exception
testParseCELDev
public void testParseCELDev()
throws java.lang.Exception
- Throws:
java.lang.Exception
testParseCHPStage
public void testParseCHPStage()
throws java.lang.Exception
- Throws:
java.lang.Exception
testParseGAL
public void testParseGAL()
throws java.lang.Exception
- Throws:
java.lang.Exception
testFileUploadManager
public void testFileUploadManager()
throws java.lang.Exception
- Throws:
java.lang.Exception
testCopyLabeledExtract
public void testCopyLabeledExtract()
throws java.lang.Exception
- Throws:
java.lang.Exception