org.biomage.tools.helpers
Class OntologyHelper
java.lang.Object
org.biomage.tools.helpers.OntologyHelper
public class OntologyHelper
- extends java.lang.Object
Field Summary |
protected static java.lang.String |
PARSER_NAME
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
PARSER_NAME
protected static final java.lang.String PARSER_NAME
- See Also:
- Constant Field Values
OntologyHelper
public OntologyHelper(java.lang.String uri)
throws java.lang.Exception
- Throws:
java.lang.Exception
main
public static void main(java.lang.String[] args)
throws java.lang.Exception
- Throws:
java.lang.Exception
isInstantiable
public boolean isInstantiable(java.lang.String mgedClassName)
getInstances
public java.util.ArrayList getInstances(java.lang.String mgedClassName)
getEnumValues
public java.util.ArrayList getEnumValues(java.lang.String mgedPropertyName)
getPropertiesInfo
public java.util.HashMap getPropertiesInfo(java.lang.String mgedClassName)
resolveOntologyClassNameFromModel
public java.lang.String resolveOntologyClassNameFromModel(Extendable referingObject,
java.lang.String ontologyEntryName)
checkEntryName
public java.lang.String checkEntryName(java.lang.String referingClassName,
java.lang.String ontEntryName)
getOntologyReference
public DatabaseEntry getOntologyReference(java.lang.String term)
getSubClassNames
public java.util.ArrayList getSubClassNames(java.lang.String ontClass)
getPossibleNames
public java.util.ArrayList getPossibleNames(Extendable object,
java.lang.String propertyName)
getPossibleNames
public java.util.ArrayList getPossibleNames(OntologyHelper.ClassInformation classInfo,
java.lang.String propertyName)
classExists
public boolean classExists(java.lang.String className)
parse
public void parse(java.lang.String uri)
throws java.lang.Exception
- Throws:
java.lang.Exception
getInstanceIndex
public java.util.ArrayList getInstanceIndex()
- Returns:
- Returns the instanceIndex.