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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.BioAssayData.BioAssayTuple
public class BioAssayTuple
Transformed container to specify a BioAssay and the Design Elements and their data for that BioAssay.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasDesignElementTuples |
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HasDesignElementTuples.DesignElementTuples_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected BioAssay |
bioAssay
The BioAssay associated with the value of the BioAssayDatum. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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BioAssayTuple()
Default constructor. |
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BioAssayTuple(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToDesignElementTuples(DesignElementTuple designElementTuple)
Method to add DesignElementTuple to DesignElementTuples_list |
void |
addToDesignElementTuples(int position,
DesignElementTuple designElementTuple)
Method to add DesignElementTuple at position to DesignElementTuples_list |
boolean |
emptyMAGEobject()
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BioAssay |
getBioAssay()
Get method for bioAssay |
HasDesignElementTuples.DesignElementTuples_list |
getDesignElementTuples()
Get method for designElementTuples |
DesignElementTuple |
getFromDesignElementTuples(int position)
Method to get DesignElementTuple from DesignElementTuples_list |
java.lang.String |
getModelClassName()
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void |
removeElementAtFromDesignElementTuples(int position)
Method to remove by position from DesignElementTuples_list |
void |
removeFromDesignElementTuples(DesignElementTuple designElementTuple)
Method to remove first DesignElementTuple from DesignElementTuples_list |
void |
setBioAssay(BioAssay bioAssay)
Set method for bioAssay |
void |
setDesignElementTuples(HasDesignElementTuples.DesignElementTuples_list designElementTuples)
Set method for designElementTuples |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected BioAssay bioAssay
Constructor Detail |
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public BioAssayTuple()
public BioAssayTuple(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setBioAssay(BioAssay bioAssay)
value
- to setpublic BioAssay getBioAssay()
public void setDesignElementTuples(HasDesignElementTuples.DesignElementTuples_list designElementTuples)
setDesignElementTuples
in interface HasDesignElementTuples
value
- to setpublic HasDesignElementTuples.DesignElementTuples_list getDesignElementTuples()
getDesignElementTuples
in interface HasDesignElementTuples
public void addToDesignElementTuples(DesignElementTuple designElementTuple)
addToDesignElementTuples
in interface HasDesignElementTuples
public void addToDesignElementTuples(int position, DesignElementTuple designElementTuple)
addToDesignElementTuples
in interface HasDesignElementTuples
public DesignElementTuple getFromDesignElementTuples(int position)
getFromDesignElementTuples
in interface HasDesignElementTuples
public void removeElementAtFromDesignElementTuples(int position)
removeElementAtFromDesignElementTuples
in interface HasDesignElementTuples
public void removeFromDesignElementTuples(DesignElementTuple designElementTuple)
removeFromDesignElementTuples
in interface HasDesignElementTuples
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