|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Uses of BioAssay in gov.nih.nci.caarray.services.bioassaydata |
---|
Methods in gov.nih.nci.caarray.services.bioassaydata that return BioAssay | |
---|---|
BioAssay |
BioAssayDataInfo.getBioAssay()
|
Constructors in gov.nih.nci.caarray.services.bioassaydata with parameters of type BioAssay | |
---|---|
BioAssayDataInfo(BioAssayData bioAssayData,
BioAssay bioAssay,
java.io.File dataFile,
SourceType sourceType,
Array array,
Experiment experiment,
java.lang.String username)
Creates a new instance. |
Uses of BioAssay in gov.nih.nci.caarray.services.experiment |
---|
Methods in gov.nih.nci.caarray.services.experiment with parameters of type BioAssay | |
---|---|
boolean |
ExperimentManagerDB.deleteBioAssayFromExperiment(BioAssay bioAssay,
Experiment experiment)
|
Uses of BioAssay in gov.nih.nci.caarray.services.fileparse |
---|
Methods in gov.nih.nci.caarray.services.fileparse that return BioAssay | |
---|---|
static BioAssay[] |
CaArrayToMageConversion.getMageTypesForBioAssays(ParsingBioAssay[] inArray)
|
Uses of BioAssay in gov.nih.nci.caarray.services.fileparse2 |
---|
Methods in gov.nih.nci.caarray.services.fileparse2 with parameters of type BioAssay | |
---|---|
void |
HybridizationManagerDB.saveBioAssay(BioAssay bioAssay)
|
Uses of BioAssay in gov.nih.nci.caarray.services.util.netcdf |
---|
Methods in gov.nih.nci.caarray.services.util.netcdf with parameters of type BioAssay | |
---|---|
java.lang.Object |
NETCDFFileReader.getBioAssayDatum(BioAssay assay,
QuantitationType quantitationType,
DesignElement designElement)
|
java.lang.String |
NETCDFFileReader.getCubeStringBDQ(BioAssay assay)
Get the cube in the order people like to see it |
java.lang.String |
NETCDFFileReader.getCubeStringBQD(BioAssay assay)
Get the cube in the caArray natural order |
java.lang.Object[] |
NETCDFFileReader.getQuantitationArray(BioAssay assay,
QuantitationType quantitationType)
|
QuantitationType[] |
NETCDFFileReader.getQuantitations(BioAssay assay)
Gets an entire quantitation type for an assay |
Constructors in gov.nih.nci.caarray.services.util.netcdf with parameters of type BioAssay | |
---|---|
NETCDFCreator(DesignElement[] designElementDimension,
QuantitationType[] quantitationTypeDimension,
BioAssay[] bioAssayDimension)
Constructs the class with the neccessary items as arrays |
Uses of BioAssay in org.biomage.BioAssay |
---|
Subclasses of BioAssay in org.biomage.BioAssay | |
---|---|
class |
DerivedBioAssay
A BioAssay that is created by the Transformation BioEvent from one or more MeasuredBioAssays or DerivedBioAssays. |
class |
MeasuredBioAssay
A measured bioAssay is the direct processing of information in a physical bioAssay by the featureExtraction event. |
class |
PhysicalBioAssay
A bioAssay created by the bioAssayCreation event (e.g. |
Methods in org.biomage.BioAssay that return BioAssay | |
---|---|
BioAssay |
BioAssay_package.getFromBioAssay_list(int position)
Method to get BioAssay from BioAssay_list |
Methods in org.biomage.BioAssay with parameters of type BioAssay | |
---|---|
void |
BioAssay_package.addToBioAssay_list(BioAssay bioAssay)
Method to add BioAssay to BioAssay_list |
void |
BioAssay_package.addToBioAssay_list(int position,
BioAssay bioAssay)
Method to add BioAssay at position to BioAssay_list |
void |
BioAssay_package.removeFromBioAssay_list(BioAssay bioAssay)
Method to remove first BioAssay from BioAssay_list |
Uses of BioAssay in org.biomage.BioAssayData |
---|
Fields in org.biomage.BioAssayData declared as BioAssay | |
---|---|
protected BioAssay |
BioAssayTuple.bioAssay
The BioAssay associated with the value of the BioAssayDatum. |
Methods in org.biomage.BioAssayData that return BioAssay | |
---|---|
BioAssay |
BioAssayTuple.getBioAssay()
Get method for bioAssay |
BioAssay |
BioAssayDimension.getFromBioAssays(int position)
Method to get BioAssay from BioAssays_list |
BioAssay |
BioAssayMap.getFromSourceBioAssays(int position)
Method to get BioAssay from SourceBioAssays_list |
Methods in org.biomage.BioAssayData with parameters of type BioAssay | |
---|---|
void |
BioAssayDimension.addToBioAssays(BioAssay bioAssay)
Method to add BioAssay to BioAssays_list |
void |
BioAssayDimension.addToBioAssays(int position,
BioAssay bioAssay)
Method to add BioAssay at position to BioAssays_list |
void |
BioAssayMap.addToSourceBioAssays(BioAssay bioAssay)
Method to add BioAssay to SourceBioAssays_list |
void |
BioAssayMap.addToSourceBioAssays(int position,
BioAssay bioAssay)
Method to add BioAssay at position to SourceBioAssays_list |
void |
BioAssayDimension.removeFromBioAssays(BioAssay bioAssay)
Method to remove first BioAssay from BioAssays_list |
void |
BioAssayMap.removeFromSourceBioAssays(BioAssay bioAssay)
Method to remove first BioAssay from SourceBioAssays_list |
void |
BioAssayTuple.setBioAssay(BioAssay bioAssay)
Set method for bioAssay |
Uses of BioAssay in org.biomage.Experiment |
---|
Methods in org.biomage.Experiment that return BioAssay | |
---|---|
BioAssay |
Experiment.getFromBioAssays(int position)
Method to get BioAssay from BioAssays_list |
BioAssay |
ExperimentDesign.getFromTopLevelBioAssays(int position)
Method to get BioAssay from TopLevelBioAssays_list |
Methods in org.biomage.Experiment with parameters of type BioAssay | |
---|---|
void |
Experiment.addToBioAssays(BioAssay bioAssay)
Method to add BioAssay to BioAssays_list |
void |
Experiment.addToBioAssays(int position,
BioAssay bioAssay)
Method to add BioAssay at position to BioAssays_list |
void |
ExperimentDesign.addToTopLevelBioAssays(BioAssay bioAssay)
Method to add BioAssay to TopLevelBioAssays_list |
void |
ExperimentDesign.addToTopLevelBioAssays(int position,
BioAssay bioAssay)
Method to add BioAssay at position to TopLevelBioAssays_list |
void |
Experiment.removeFromBioAssays(BioAssay bioAssay)
Method to remove first BioAssay from BioAssays_list |
void |
ExperimentDesign.removeFromTopLevelBioAssays(BioAssay bioAssay)
Method to remove first BioAssay from TopLevelBioAssays_list |
Uses of BioAssay in org.biomage.Interface |
---|
Methods in org.biomage.Interface that return BioAssay | |
---|---|
BioAssay |
HasBioAssay.getBioAssay()
Get method for bioAssay |
BioAssay |
HasBioAssays.getFromBioAssays(int position)
Method to get BioAssay from BioAssays_list |
BioAssay |
HasSourceBioAssays.getFromSourceBioAssays(int position)
Method to get BioAssay from SourceBioAssays_list |
BioAssay |
HasTopLevelBioAssays.getFromTopLevelBioAssays(int position)
Method to get BioAssay from TopLevelBioAssays_list |
Methods in org.biomage.Interface with parameters of type BioAssay | |
---|---|
void |
HasBioAssays.addToBioAssays(BioAssay bioAssay)
Method to add BioAssay to BioAssays_list |
void |
HasBioAssays.addToBioAssays(int position,
BioAssay bioAssay)
Method to add BioAssay at position to BioAssays_list |
void |
HasSourceBioAssays.addToSourceBioAssays(BioAssay bioAssay)
Method to add BioAssay to SourceBioAssays_list |
void |
HasSourceBioAssays.addToSourceBioAssays(int position,
BioAssay bioAssay)
Method to add BioAssay at position to SourceBioAssays_list |
void |
HasTopLevelBioAssays.addToTopLevelBioAssays(BioAssay bioAssay)
Method to add BioAssay to TopLevelBioAssays_list |
void |
HasTopLevelBioAssays.addToTopLevelBioAssays(int position,
BioAssay bioAssay)
Method to add BioAssay at position to TopLevelBioAssays_list |
void |
HasBioAssays.removeFromBioAssays(BioAssay bioAssay)
Method to remove first BioAssay from BioAssays_list |
void |
HasSourceBioAssays.removeFromSourceBioAssays(BioAssay bioAssay)
Method to remove first BioAssay from SourceBioAssays_list |
void |
HasTopLevelBioAssays.removeFromTopLevelBioAssays(BioAssay bioAssay)
Method to remove first BioAssay from TopLevelBioAssays_list |
void |
HasBioAssay.setBioAssay(BioAssay bioAssay)
Set method for bioAssay |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |