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java.lang.Objectorg.biomage.QuantitationType.QuantitationType_package
public class QuantitationType_package
This Package defines the classes for quantitations, such as measured and derived signal, error, and pvalue. The subclasses of StandardQuantitationType will be the best fit from FeatureExtraction or Transformation Protocol for the values obtained. Other values can be specified using SpecializedQuantitationType.
Nested Class Summary | |
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class |
QuantitationType_package.QuantitationType_list
Inner list class for holding multiple entries for attribute quantitationType. |
Field Summary | |
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QuantitationType_package.QuantitationType_list |
quantitationType_list
A method for calculating a single datum of the matrix (e.g. |
Constructor Summary | |
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QuantitationType_package()
Default constructor. |
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QuantitationType_package(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToQuantitationType_list(int position,
QuantitationType quantitationType)
Method to add QuantitationType at position to QuantitationType_list |
void |
addToQuantitationType_list(QuantitationType quantitationType)
Method to add QuantitationType to QuantitationType_list |
boolean |
emptyMAGEobject()
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QuantitationType |
getFromQuantitationType_list(int position)
Method to get QuantitationType from QuantitationType_list |
java.lang.String |
getModelClassName()
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QuantitationType_package.QuantitationType_list |
getQuantitationType_list()
Get method for quantitationType_list |
void |
removeElementAtFromQuantitationType_list(int position)
Method to remove by position from QuantitationType_list |
void |
removeFromQuantitationType_list(QuantitationType quantitationType)
Method to remove first QuantitationType from QuantitationType_list |
void |
setQuantitationType_list(QuantitationType_package.QuantitationType_list quantitationType_list)
Set method for quantitationType_list |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public QuantitationType_package.QuantitationType_list quantitationType_list
Constructor Detail |
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public QuantitationType_package()
public QuantitationType_package(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
java.io.IOException
public java.lang.String getModelClassName()
public void setQuantitationType_list(QuantitationType_package.QuantitationType_list quantitationType_list)
value
- to setpublic QuantitationType_package.QuantitationType_list getQuantitationType_list()
public void addToQuantitationType_list(QuantitationType quantitationType)
public void addToQuantitationType_list(int position, QuantitationType quantitationType)
public QuantitationType getFromQuantitationType_list(int position)
public void removeElementAtFromQuantitationType_list(int position)
public void removeFromQuantitationType_list(QuantitationType quantitationType)
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