org.biomage.BioMaterial
Class BioMaterialMeasurement

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.BioMaterial.BioMaterialMeasurement
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasBioMaterial, HasMeasurement, HasPropertySets

public class BioMaterialMeasurement
extends Extendable
implements java.io.Serializable, HasBioMaterial, HasMeasurement

A BioMaterialMeasurement is a pairing of a source BioMaterial and an amount (Measurement) of that BioMaterial.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
protected  BioMaterial bioMaterial
          A source BioMaterial for a treatment.
protected  Measurement measurement
          The amount of the BioMaterial.
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
BioMaterialMeasurement()
          Default constructor.
BioMaterialMeasurement(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 boolean emptyMAGEobject()
           
 BioMaterial getBioMaterial()
          Get method for bioMaterial
 Measurement getMeasurement()
          Get method for measurement
 java.lang.String getModelClassName()
           
 void setBioMaterial(BioMaterial bioMaterial)
          Set method for bioMaterial
 void setMeasurement(Measurement measurement)
          Set method for measurement
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

bioMaterial

protected BioMaterial bioMaterial
A source BioMaterial for a treatment.


measurement

protected Measurement measurement
The amount of the BioMaterial.

Constructor Detail

BioMaterialMeasurement

public BioMaterialMeasurement()
Default constructor.


BioMaterialMeasurement

public BioMaterialMeasurement(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class Extendable
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class Extendable
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class Extendable
Throws:
java.io.IOException

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class Extendable

setBioMaterial

public void setBioMaterial(BioMaterial bioMaterial)
Set method for bioMaterial

Specified by:
setBioMaterial in interface HasBioMaterial
Parameters:
value - to set

getBioMaterial

public BioMaterial getBioMaterial()
Get method for bioMaterial

Specified by:
getBioMaterial in interface HasBioMaterial
Returns:
value of the attribute

setMeasurement

public void setMeasurement(Measurement measurement)
Set method for measurement

Specified by:
setMeasurement in interface HasMeasurement
Parameters:
value - to set

getMeasurement

public Measurement getMeasurement()
Get method for measurement

Specified by:
getMeasurement in interface HasMeasurement
Returns:
value of the attribute