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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.ArrayDesign.ZoneLayout
public class ZoneLayout
Specifies the layout of features in a rectangular grid.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected DistanceUnit |
distanceUnit
Unit of the ZoneLayout attributes. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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ZoneLayout()
Default constructor. |
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ZoneLayout(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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boolean |
emptyMAGEobject()
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DistanceUnit |
getDistanceUnit()
Get method for distanceUnit |
java.lang.String |
getModelClassName()
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java.lang.Integer |
getNumFeaturesPerCol()
Get method for numFeaturesPerCol |
java.lang.Integer |
getNumFeaturesPerRow()
Get method for numFeaturesPerRow |
java.lang.Float |
getSpacingBetweenCols()
Get method for spacingBetweenCols |
java.lang.Float |
getSpacingBetweenRows()
Get method for spacingBetweenRows |
void |
setDistanceUnit(DistanceUnit distanceUnit)
Set method for distanceUnit |
void |
setNumFeaturesPerCol(java.lang.Integer numFeaturesPerCol)
Set method for numFeaturesPerCol |
void |
setNumFeaturesPerRow(java.lang.Integer numFeaturesPerRow)
Set method for numFeaturesPerRow |
void |
setSpacingBetweenCols(java.lang.Float spacingBetweenCols)
Set method for spacingBetweenCols |
void |
setSpacingBetweenRows(java.lang.Float spacingBetweenRows)
Set method for spacingBetweenRows |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected DistanceUnit distanceUnit
Constructor Detail |
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public ZoneLayout()
public ZoneLayout(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public void setNumFeaturesPerRow(java.lang.Integer numFeaturesPerRow)
value
- to setpublic java.lang.Integer getNumFeaturesPerRow()
public void setNumFeaturesPerCol(java.lang.Integer numFeaturesPerCol)
value
- to setpublic java.lang.Integer getNumFeaturesPerCol()
public void setSpacingBetweenRows(java.lang.Float spacingBetweenRows)
value
- to setpublic java.lang.Float getSpacingBetweenRows()
public void setSpacingBetweenCols(java.lang.Float spacingBetweenCols)
value
- to setpublic java.lang.Float getSpacingBetweenCols()
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setDistanceUnit(DistanceUnit distanceUnit)
setDistanceUnit
in interface HasDistanceUnit
value
- to setpublic DistanceUnit getDistanceUnit()
getDistanceUnit
in interface HasDistanceUnit
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