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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.Experiment.FactorValue
public class FactorValue
The value for a ExperimentalFactor
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
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HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
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HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected ExperimentalFactor |
experimentalFactor
The pairing of BioAssay FactorValues with the ExperimentDesign ExperimentFactor. |
protected Measurement |
measurement
The measured value for this factor. |
protected OntologyEntry |
value
Allows a more complex value to be specified for a FactorValue than a simple Measurement. |
Fields inherited from class org.biomage.Common.Describable |
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security |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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FactorValue()
Default constructor. |
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FactorValue(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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boolean |
emptyMAGEobject()
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ExperimentalFactor |
getExperimentalFactor()
Get method for experimentalFactor |
Measurement |
getMeasurement()
Get method for measurement |
java.lang.String |
getModelClassName()
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OntologyEntry |
getValue()
Get method for value |
void |
setAttributes(org.xml.sax.Attributes atts)
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void |
setExperimentalFactor(ExperimentalFactor experimentalFactor)
Set method for experimentalFactor |
void |
setMeasurement(Measurement measurement)
Set method for measurement |
void |
setValue(OntologyEntry value)
Set method for value |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Identifiable |
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getIdentifier, getName, setIdentifier, setName, toString |
Methods inherited from class org.biomage.Common.Describable |
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addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected ExperimentalFactor experimentalFactor
protected Measurement measurement
protected OntologyEntry value
Constructor Detail |
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public FactorValue()
public FactorValue(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class Identifiable
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Identifiable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Identifiable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Identifiable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Identifiable
public void setExperimentalFactor(ExperimentalFactor experimentalFactor)
setExperimentalFactor
in interface HasExperimentalFactor
value
- to setpublic ExperimentalFactor getExperimentalFactor()
getExperimentalFactor
in interface HasExperimentalFactor
public void setMeasurement(Measurement measurement)
setMeasurement
in interface HasMeasurement
value
- to setpublic Measurement getMeasurement()
getMeasurement
in interface HasMeasurement
public void setValue(OntologyEntry value)
setValue
in interface HasValue
value
- to setpublic OntologyEntry getValue()
getValue
in interface HasValue
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