gov.nih.nci.caarray.services.fileparse2
Class HybridizationManagerDB

java.lang.Object
  extended by gov.nih.nci.caarray.services.util.db.ManagerDB
      extended by gov.nih.nci.caarray.services.fileparse2.HybridizationManagerDB

public final class HybridizationManagerDB
extends ManagerDB

Author:
gustafsons, tranp

Field Summary
 
Fields inherited from class gov.nih.nci.caarray.services.util.db.ManagerDB
CASCADE_LINK, CASCADE_NONE, CASCADE_OBJECT, ID_UNSET
 
Constructor Summary
HybridizationManagerDB()
           
 
Method Summary
 void createBioAssayData(long bioAssayId, long experimentId, long arrayDesignId, DesignElement[] designElements, QuantitationType[] quantitationTypes)
           
 long createDerivedBioAssay(long measuredBioAssayId, long experimentId)
          Creates a DerivedBioAssay that is derived from the specified MeasuredBioAssay.
 void saveBioAssay(BioAssay bioAssay)
           
 void saveBioAssayData(BioAssayData bioAssayData)
           
 
Methods inherited from class gov.nih.nci.caarray.services.util.db.ManagerDB
clearCache, close, countObjects, countObjects, deleteByQuery, deleteMtoNRelation, deleteObject, deleteObject, deleteObject, deleteObjectByQuery, exists, getIdentifiable, getObject, getObject, getObject, getObject, getObject, getObject, getObjectIterator, getObjectIterator, getObjects, getObjects, getObjects, getPersistenceBroker, getSqlInLimit, insertMtoNRelation, insertMtoNRelation, insertObject, insertObject, link, link, removeFromCache, retrieveReference, retrieveReferences, setCascadeDelete, setCascadeRetrieve, setCascadeStore, storeObject, storeObject, unlink, unlink, updateObject, updateObject
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

HybridizationManagerDB

public HybridizationManagerDB()
Method Detail

createDerivedBioAssay

public long createDerivedBioAssay(long measuredBioAssayId,
                                  long experimentId)
                           throws java.lang.Exception
Creates a DerivedBioAssay that is derived from the specified MeasuredBioAssay. The created DerivedBioAssay is associated with the specified Experiment.

Parameters:
measuredBioAssayId -
experimentId -
Returns:
Throws:
java.lang.Exception

createBioAssayData

public void createBioAssayData(long bioAssayId,
                               long experimentId,
                               long arrayDesignId,
                               DesignElement[] designElements,
                               QuantitationType[] quantitationTypes)
                        throws java.lang.Exception
Throws:
java.lang.Exception

saveBioAssayData

public void saveBioAssayData(BioAssayData bioAssayData)
                      throws java.lang.Exception
Throws:
java.lang.Exception

saveBioAssay

public void saveBioAssay(BioAssay bioAssay)
                  throws java.lang.Exception
Throws:
java.lang.Exception