gov.nih.nci.caarray.services.fileparse
Class FileParseManagerDB

java.lang.Object
  extended by gov.nih.nci.caarray.services.util.db.ManagerDB
      extended by gov.nih.nci.caarray.services.fileparse.FileParseManagerDB

public final class FileParseManagerDB
extends ManagerDB

Author:
gustafsons

Field Summary
 
Fields inherited from class gov.nih.nci.caarray.services.util.db.ManagerDB
CASCADE_LINK, CASCADE_NONE, CASCADE_OBJECT, ID_UNSET
 
Constructor Summary
FileParseManagerDB()
           
 
Method Summary
 void createBioAssayData(java.lang.Long bioAssayId, java.lang.Long experimentId, DesignElement[] designElements, QuantitationType[] mageTypes, java.lang.Long arrayDesignId)
           
 DerivedBioAssay createDerivedBioAssay(java.lang.Long mAssayId, java.lang.Long experimentId)
           
 java.util.Iterator getCELFeatureIterator(java.lang.Long featureGroupId)
           
 java.util.Iterator getCompositeIterator(java.lang.Long compositeGroupId)
           
 java.util.Iterator getFeatureIterator(java.lang.Long featureGroupId)
           
 
Methods inherited from class gov.nih.nci.caarray.services.util.db.ManagerDB
clearCache, close, countObjects, countObjects, deleteByQuery, deleteMtoNRelation, deleteObject, deleteObject, deleteObject, deleteObjectByQuery, exists, getIdentifiable, getObject, getObject, getObject, getObject, getObject, getObject, getObjectIterator, getObjectIterator, getObjects, getObjects, getObjects, getPersistenceBroker, getSqlInLimit, insertMtoNRelation, insertMtoNRelation, insertObject, insertObject, link, link, removeFromCache, retrieveReference, retrieveReferences, setCascadeDelete, setCascadeRetrieve, setCascadeStore, storeObject, storeObject, unlink, unlink, updateObject, updateObject
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

FileParseManagerDB

public FileParseManagerDB()
Method Detail

createDerivedBioAssay

public DerivedBioAssay createDerivedBioAssay(java.lang.Long mAssayId,
                                             java.lang.Long experimentId)
                                      throws java.lang.Exception
Throws:
java.lang.Exception

createBioAssayData

public void createBioAssayData(java.lang.Long bioAssayId,
                               java.lang.Long experimentId,
                               DesignElement[] designElements,
                               QuantitationType[] mageTypes,
                               java.lang.Long arrayDesignId)
                        throws java.lang.Exception
Throws:
java.lang.Exception

getCELFeatureIterator

public java.util.Iterator getCELFeatureIterator(java.lang.Long featureGroupId)
                                         throws java.lang.Exception
Throws:
java.lang.Exception

getFeatureIterator

public java.util.Iterator getFeatureIterator(java.lang.Long featureGroupId)
                                      throws java.lang.Exception
Throws:
java.lang.Exception

getCompositeIterator

public java.util.Iterator getCompositeIterator(java.lang.Long compositeGroupId)
                                        throws java.lang.Exception
Throws:
java.lang.Exception