Deprecated API


Contents
Deprecated Classes
org.biomage.Experiment.HybridizationFileUpload
          This bean is replaced by HybridizationFileUploadGroup and HybridizationFileUploadEntry for version 1.3 
gov.nih.nci.caarray.common.data.experiment.HybridizationFileUploadData
          This bean is replaced by HybridizationFileUploadGroupData and HybridizationFileUploadEntryData for version 1.3 
gov.nih.nci.caarray.services.util.mage.MAGEReader
          Use mageloader.DatabaseImportMAGEReader instead 
 

Deprecated Methods
gov.nih.nci.caarray.common.delegate.FileUploadManagerDelegate.addArrayDesignFileUploadEntry(ArrayDesignFileUploadEntryData, String)
          no longer used 
gov.nih.nci.caarray.services.fileupload2.ejb.FileUploadManagerEJB.addArrayDesignFileUploadEntry(ArrayDesignFileUploadEntryData, String)
          no longer used 
gov.nih.nci.caarray.services.experiment.ejb.ExperimentManagerEJB.addHybridizationFileUpload(long, HybridizationFileUploadData)
          This method is replaced by FileUploadManagerEJB.addHybridizationFileUploadGroup 
gov.nih.nci.caarray.services.experiment.ejb.ExperimentManagerEJB.addHybridizationFileUploads(long, HybridizationFileUploadData[])
          This method is replaced by FileUploadManagerEJB.addHybridizationFileUploadGroup 
gov.nih.nci.caarray.common.delegate.SecurityManagerDelegate.canUserAccessElement(String, SecuredElementItf[], String[])
            
gov.nih.nci.caarray.common.delegate.CaSecurityManagerDelegate.canUserAccessElement(String, SecuredElementItf[], String[])
            
gov.nih.nci.caarray.common.delegate.SecurityManagerDelegate.canUserAccessElement(String, String, String[])
            
gov.nih.nci.caarray.common.delegate.CaSecurityManagerDelegate.canUserAccessElement(String, String, String[])
            
gov.nih.nci.caarray.services.security.ejb.SecurityManagerEJB.canUserAccessElement(String, String, String[])
            
gov.nih.nci.caarray.services.security.ejb.CaSecurityManagerEJB.canUserAccessElement(String, String, String[])
            
gov.nih.nci.caarray.services.experiment.ExperimentManagerDB.countHybridizationFileUploads(long)
          This method was replaced by countHybridizationFileUploadEntries for the redesigned 
gov.nih.nci.caarray.services.security.SecurityAdminService.deassignElementToRole(long, String)
          Not used, marked for removal 
gov.nih.nci.caarray.services.experiment.ejb.ExperimentManagerEJB.deleteHybridizationFileUploadFromExperiment(long, long)
          - No longer applicable 
gov.nih.nci.caarray.services.experiment.ejb.ExperimentManagerEJB.getHybridizationFileUpload(long)
          This method is replaced by FileUploadManagerEJB.addHybridizationFileUploadEntry 
gov.nih.nci.caarray.services.experiment.ejb.ExperimentManagerEJB.getHybridizationFileUploads(long)
          This method is replaced by FileUploadManagerEJB.getHybridizationFileUploadEntries 
gov.nih.nci.caarray.services.experiment.ejb.ExperimentManagerEJB.getInputFilesDirectory(long)
          need to sraigten backend. Move files from ftp area to common area and download from there 
gov.nih.nci.caarray.common.delegate.SecurityManagerDelegate.isUserElementOwner(String, String)
            
gov.nih.nci.caarray.common.delegate.CaSecurityManagerDelegate.isUserElementOwner(String, String)
            
gov.nih.nci.caarray.services.security.ejb.SecurityManagerEJB.isUserElementOwner(String, String)
            
gov.nih.nci.caarray.services.security.ejb.CaSecurityManagerEJB.isUserElementOwner(String, String)
            
gov.nih.nci.caarray.services.fileparse.test.usecases.AbstractUseCase.readLineWithMessage(String)
          Used for interactive command prompt 
gov.nih.nci.caarray.services.security.test.usecases.AbstractUseCase.readLineWithMessage(String)
          Used for interactive command prompt 
gov.nih.nci.caarray.services.test.usecases.AbstractUseCase.readLineWithMessage(String)
          Used for interactive command prompt 
gov.nih.nci.caarray.services.util.netcdf.test.usecases.AbstractUseCase.readLineWithMessage(String)
          Used for interactive command prompt 
gov.nih.nci.caarray.common.delegate.BioMaterialManagerDelegate.searchBioMaterials(BioMaterialSearchCriteria)
          No uses appear to be found, possible dead code 
gov.nih.nci.caarray.common.delegate.BioMaterialManagerDelegate.searchBioSources(BioMaterialSearchCriteria, boolean)
          No uses appear to be found, possible dead code 
gov.nih.nci.caarray.services.experiment.ejb.ExperimentManagerEJB.submitHybridizationFileUploadsForParsing(long, long[])
          This functionality is handled by FileUploadManagerEJB for 1.3 
gov.nih.nci.caarray.services.experiment.ejb.ExperimentManagerEJB.updateHybridizationFileUpload(HybridizationFileUploadData)
          This method is replaced by FileUploadManagerEJB.addHybridizationFileUploadGroup