org.biomage.Protocol
Class SoftwareApplication

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.Common.Describable
          extended by org.biomage.Protocol.ParameterizableApplication
              extended by org.biomage.Protocol.SoftwareApplication
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasAuditTrail, HasDescriptions, HasParameterValues, HasPropertySets, HasSecurity, HasSoftware

public class SoftwareApplication
extends ParameterizableApplication
implements java.io.Serializable, HasSoftware

The use of a piece of software with the requisite Parameters and ParameterValues.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasParameterValues
HasParameterValues.ParameterValues_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail
HasAuditTrail.AuditTrail_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions
HasDescriptions.Descriptions_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
protected  Software software
          The underlying software.
 
Fields inherited from class org.biomage.Protocol.ParameterizableApplication
parameterValues
 
Fields inherited from class org.biomage.Common.Describable
security
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
SoftwareApplication()
          Default constructor.
SoftwareApplication(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 boolean emptyMAGEobject()
           
 java.lang.String getModelClassName()
           
 java.util.Date getReleaseDate()
          Get method for releaseDate
 Software getSoftware()
          Get method for software
 java.lang.String getVersion()
          Get method for version
 void setReleaseDate(java.util.Date releaseDate)
          Set method for releaseDate
 void setSoftware(Software software)
          Set method for software
 void setVersion(java.lang.String version)
          Set method for version
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.Protocol.ParameterizableApplication
addToParameterValues, addToParameterValues, getFromParameterValues, getParameterValues, removeElementAtFromParameterValues, removeFromParameterValues, setParameterValues
 
Methods inherited from class org.biomage.Common.Describable
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAttributes, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId, toString
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

software

protected Software software
The underlying software.

Constructor Detail

SoftwareApplication

public SoftwareApplication()
Default constructor.


SoftwareApplication

public SoftwareApplication(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class ParameterizableApplication
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class ParameterizableApplication
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class ParameterizableApplication
Throws:
java.io.IOException

setVersion

public void setVersion(java.lang.String version)
Set method for version

Parameters:
value - to set

getVersion

public java.lang.String getVersion()
Get method for version

Returns:
value of the attribute

setReleaseDate

public void setReleaseDate(java.util.Date releaseDate)
Set method for releaseDate

Parameters:
value - to set

getReleaseDate

public java.util.Date getReleaseDate()
Get method for releaseDate

Returns:
value of the attribute

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class ParameterizableApplication

setSoftware

public void setSoftware(Software software)
Set method for software

Specified by:
setSoftware in interface HasSoftware
Parameters:
value - to set

getSoftware

public Software getSoftware()
Get method for software

Specified by:
getSoftware in interface HasSoftware
Returns:
value of the attribute