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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.BioAssayData.DataExternal
public class DataExternal
Transformed class to associate external data to the BioAssayDataCube
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary |
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Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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DataExternal()
Default constructor. |
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DataExternal(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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boolean |
emptyMAGEobject()
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java.lang.String |
getDataFormat()
Get method for dataFormat |
java.lang.String |
getDataFormatInfoURI()
Get method for dataFormatInfoURI |
java.lang.String |
getFilenameURI()
Get method for filenameURI |
java.lang.String |
getModelClassName()
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void |
setDataFormat(java.lang.String dataFormat)
Set method for dataFormat |
void |
setDataFormatInfoURI(java.lang.String dataFormatInfoURI)
Set method for dataFormatInfoURI |
void |
setFilenameURI(java.lang.String filenameURI)
Set method for filenameURI |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public DataExternal()
public DataExternal(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public void setDataFormat(java.lang.String dataFormat)
value
- to setpublic java.lang.String getDataFormat()
public void setDataFormatInfoURI(java.lang.String dataFormatInfoURI)
value
- to setpublic java.lang.String getDataFormatInfoURI()
public void setFilenameURI(java.lang.String filenameURI)
value
- to setpublic java.lang.String getFilenameURI()
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
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