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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.Array.ArrayManufacture
public class ArrayManufacture
Describes the process by which arrays are produced.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasArrays |
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HasArrays.Arrays_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasProtocolApplications |
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HasProtocolApplications.ProtocolApplications_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasFeatureLIMSs |
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HasFeatureLIMSs.FeatureLIMSs_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasArrayManufacturers |
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HasArrayManufacturers.ArrayManufacturers_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasQualityControlStatistics |
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HasQualityControlStatistics.QualityControlStatistics_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
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HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
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HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected java.util.List |
arrayManufacturers
The person or organization to contact for information concerning the ArrayManufacture. |
protected java.util.List |
arrays
Association between the manufactured array and the information on that manufacture. |
protected java.util.List |
featureLIMSs
Information on the manufacture of the features. |
protected java.util.List |
protocolApplications
The protocols followed in the manufacturing of the arrays. |
protected java.util.List |
qualityControlStatistics
Information on the quality of the ArrayManufacture. |
Fields inherited from class org.biomage.Common.Describable |
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security |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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ArrayManufacture()
Default constructor. |
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ArrayManufacture(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToArrayManufacturers(Contact contact)
Method to add Contact to ArrayManufacturers_list |
void |
addToArrayManufacturers(int position,
Contact contact)
Method to add Contact at position to ArrayManufacturers_list |
void |
addToArrays(Array array)
Method to add Array to Arrays_list |
void |
addToArrays(int position,
Array array)
Method to add Array at position to Arrays_list |
void |
addToFeatureLIMSs(int position,
ManufactureLIMS manufactureLIMS)
Method to add ManufactureLIMS at position to FeatureLIMSs_list |
void |
addToFeatureLIMSs(ManufactureLIMS manufactureLIMS)
Method to add ManufactureLIMS to FeatureLIMSs_list |
void |
addToProtocolApplications(int position,
ProtocolApplication protocolApplication)
Method to add ProtocolApplication at position to ProtocolApplications_list |
void |
addToProtocolApplications(ProtocolApplication protocolApplication)
Method to add ProtocolApplication to ProtocolApplications_list |
void |
addToQualityControlStatistics(int position,
NameValueType nameValueType)
Method to add NameValueType at position to QualityControlStatistics_list |
void |
addToQualityControlStatistics(NameValueType nameValueType)
Method to add NameValueType to QualityControlStatistics_list |
boolean |
emptyMAGEobject()
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HasArrayManufacturers.ArrayManufacturers_list |
getArrayManufacturers()
Get method for arrayManufacturers |
HasArrays.Arrays_list |
getArrays()
Get method for arrays |
HasFeatureLIMSs.FeatureLIMSs_list |
getFeatureLIMSs()
Get method for featureLIMSs |
Contact |
getFromArrayManufacturers(int position)
Method to get Contact from ArrayManufacturers_list |
Array |
getFromArrays(int position)
Method to get Array from Arrays_list |
ManufactureLIMS |
getFromFeatureLIMSs(int position)
Method to get ManufactureLIMS from FeatureLIMSs_list |
ProtocolApplication |
getFromProtocolApplications(int position)
Method to get ProtocolApplication from ProtocolApplications_list |
NameValueType |
getFromQualityControlStatistics(int position)
Method to get NameValueType from QualityControlStatistics_list |
java.util.Date |
getManufacturingDate()
Get method for manufacturingDate |
java.lang.String |
getModelClassName()
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HasProtocolApplications.ProtocolApplications_list |
getProtocolApplications()
Get method for protocolApplications |
HasQualityControlStatistics.QualityControlStatistics_list |
getQualityControlStatistics()
Get method for qualityControlStatistics |
java.lang.Float |
getTolerance()
Get method for tolerance |
void |
removeElementAtFromArrayManufacturers(int position)
Method to remove by position from ArrayManufacturers_list |
void |
removeElementAtFromArrays(int position)
Method to remove by position from Arrays_list |
void |
removeElementAtFromFeatureLIMSs(int position)
Method to remove by position from FeatureLIMSs_list |
void |
removeElementAtFromProtocolApplications(int position)
Method to remove by position from ProtocolApplications_list |
void |
removeElementAtFromQualityControlStatistics(int position)
Method to remove by position from QualityControlStatistics_list |
void |
removeFromArrayManufacturers(Contact contact)
Method to remove first Contact from ArrayManufacturers_list |
void |
removeFromArrays(Array array)
Method to remove first Array from Arrays_list |
void |
removeFromFeatureLIMSs(ManufactureLIMS manufactureLIMS)
Method to remove first ManufactureLIMS from FeatureLIMSs_list |
void |
removeFromProtocolApplications(ProtocolApplication protocolApplication)
Method to remove first ProtocolApplication from ProtocolApplications_list |
void |
removeFromQualityControlStatistics(NameValueType nameValueType)
Method to remove first NameValueType from QualityControlStatistics_list |
void |
setArrayManufacturers(HasArrayManufacturers.ArrayManufacturers_list arrayManufacturers)
Set method for arrayManufacturers |
void |
setArrays(HasArrays.Arrays_list arrays)
Set method for arrays |
void |
setAttributes(org.xml.sax.Attributes atts)
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void |
setFeatureLIMSs(HasFeatureLIMSs.FeatureLIMSs_list featureLIMSs)
Set method for featureLIMSs |
void |
setManufacturingDate(java.util.Date manufacturingDate)
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void |
setProtocolApplications(HasProtocolApplications.ProtocolApplications_list protocolApplications)
Set method for protocolApplications |
void |
setQualityControlStatistics(HasQualityControlStatistics.QualityControlStatistics_list qualityControlStatistics)
Set method for qualityControlStatistics |
void |
setTolerance(java.lang.Float tolerance)
Set method for tolerance |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Identifiable |
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getIdentifier, getName, setIdentifier, setName, toString |
Methods inherited from class org.biomage.Common.Describable |
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addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.util.List arrays
protected java.util.List arrayManufacturers
protected java.util.List qualityControlStatistics
protected java.util.List featureLIMSs
protected java.util.List protocolApplications
Constructor Detail |
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public ArrayManufacture()
public ArrayManufacture(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class Identifiable
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Identifiable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Identifiable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Identifiable
java.io.IOException
public java.util.Date getManufacturingDate()
public void setTolerance(java.lang.Float tolerance)
value
- to setpublic java.lang.Float getTolerance()
public java.lang.String getModelClassName()
getModelClassName
in class Identifiable
public void setArrays(HasArrays.Arrays_list arrays)
setArrays
in interface HasArrays
value
- to setpublic HasArrays.Arrays_list getArrays()
getArrays
in interface HasArrays
public void addToArrays(Array array)
addToArrays
in interface HasArrays
public void addToArrays(int position, Array array)
addToArrays
in interface HasArrays
public Array getFromArrays(int position)
getFromArrays
in interface HasArrays
public void removeElementAtFromArrays(int position)
removeElementAtFromArrays
in interface HasArrays
public void removeFromArrays(Array array)
removeFromArrays
in interface HasArrays
public void setArrayManufacturers(HasArrayManufacturers.ArrayManufacturers_list arrayManufacturers)
setArrayManufacturers
in interface HasArrayManufacturers
value
- to setpublic HasArrayManufacturers.ArrayManufacturers_list getArrayManufacturers()
getArrayManufacturers
in interface HasArrayManufacturers
public void addToArrayManufacturers(Contact contact)
addToArrayManufacturers
in interface HasArrayManufacturers
public void addToArrayManufacturers(int position, Contact contact)
addToArrayManufacturers
in interface HasArrayManufacturers
public Contact getFromArrayManufacturers(int position)
getFromArrayManufacturers
in interface HasArrayManufacturers
public void removeElementAtFromArrayManufacturers(int position)
removeElementAtFromArrayManufacturers
in interface HasArrayManufacturers
public void removeFromArrayManufacturers(Contact contact)
removeFromArrayManufacturers
in interface HasArrayManufacturers
public void setQualityControlStatistics(HasQualityControlStatistics.QualityControlStatistics_list qualityControlStatistics)
setQualityControlStatistics
in interface HasQualityControlStatistics
value
- to setpublic HasQualityControlStatistics.QualityControlStatistics_list getQualityControlStatistics()
getQualityControlStatistics
in interface HasQualityControlStatistics
public void addToQualityControlStatistics(NameValueType nameValueType)
addToQualityControlStatistics
in interface HasQualityControlStatistics
public void addToQualityControlStatistics(int position, NameValueType nameValueType)
addToQualityControlStatistics
in interface HasQualityControlStatistics
public NameValueType getFromQualityControlStatistics(int position)
getFromQualityControlStatistics
in interface HasQualityControlStatistics
public void removeElementAtFromQualityControlStatistics(int position)
removeElementAtFromQualityControlStatistics
in interface HasQualityControlStatistics
public void removeFromQualityControlStatistics(NameValueType nameValueType)
removeFromQualityControlStatistics
in interface HasQualityControlStatistics
public void setFeatureLIMSs(HasFeatureLIMSs.FeatureLIMSs_list featureLIMSs)
setFeatureLIMSs
in interface HasFeatureLIMSs
value
- to setpublic HasFeatureLIMSs.FeatureLIMSs_list getFeatureLIMSs()
getFeatureLIMSs
in interface HasFeatureLIMSs
public void addToFeatureLIMSs(ManufactureLIMS manufactureLIMS)
addToFeatureLIMSs
in interface HasFeatureLIMSs
public void addToFeatureLIMSs(int position, ManufactureLIMS manufactureLIMS)
addToFeatureLIMSs
in interface HasFeatureLIMSs
public ManufactureLIMS getFromFeatureLIMSs(int position)
getFromFeatureLIMSs
in interface HasFeatureLIMSs
public void removeElementAtFromFeatureLIMSs(int position)
removeElementAtFromFeatureLIMSs
in interface HasFeatureLIMSs
public void removeFromFeatureLIMSs(ManufactureLIMS manufactureLIMS)
removeFromFeatureLIMSs
in interface HasFeatureLIMSs
public void setProtocolApplications(HasProtocolApplications.ProtocolApplications_list protocolApplications)
setProtocolApplications
in interface HasProtocolApplications
value
- to setpublic HasProtocolApplications.ProtocolApplications_list getProtocolApplications()
getProtocolApplications
in interface HasProtocolApplications
public void addToProtocolApplications(ProtocolApplication protocolApplication)
addToProtocolApplications
in interface HasProtocolApplications
public void addToProtocolApplications(int position, ProtocolApplication protocolApplication)
addToProtocolApplications
in interface HasProtocolApplications
public ProtocolApplication getFromProtocolApplications(int position)
getFromProtocolApplications
in interface HasProtocolApplications
public void removeElementAtFromProtocolApplications(int position)
removeElementAtFromProtocolApplications
in interface HasProtocolApplications
public void removeFromProtocolApplications(ProtocolApplication protocolApplication)
removeFromProtocolApplications
in interface HasProtocolApplications
public void setManufacturingDate(java.util.Date manufacturingDate)
manufacturingDate
- The manufacturingDate to set.
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