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java.lang.Objectgov.nih.nci.caarray.services.util.db.ManagerDB
gov.nih.nci.caarray.services.fileupload2.FileUploadManagerDB
public class FileUploadManagerDB
Field Summary |
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Fields inherited from class gov.nih.nci.caarray.services.util.db.ManagerDB |
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CASCADE_LINK, CASCADE_NONE, CASCADE_OBJECT, ID_UNSET |
Constructor Summary | |
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FileUploadManagerDB()
Default Constructor |
Methods inherited from class gov.nih.nci.caarray.services.util.db.ManagerDB |
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clearCache, countObjects, countObjects, deleteByQuery, deleteMtoNRelation, deleteObject, deleteObject, deleteObject, deleteObjectByQuery, exists, getIdentifiable, getObject, getObject, getObject, getObject, getObject, getObject, getObjectIterator, getObjectIterator, getObjects, getObjects, getObjects, getPersistenceBroker, getSqlInLimit, insertMtoNRelation, insertMtoNRelation, insertObject, insertObject, link, link, removeFromCache, retrieveReference, retrieveReferences, setCascadeDelete, setCascadeRetrieve, setCascadeStore, storeObject, storeObject, unlink, unlink, updateObject, updateObject |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public FileUploadManagerDB()
Method Detail |
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public HybridizationFileUploadGroup getHybridizationFileUploadGroup(long hybridizationFileUploadGroupId) throws java.lang.Exception
java.lang.Exception
public long addArrayDesignFileUploadEntry(ArrayDesignFileUploadEntry fileUploadEntry, java.lang.String errorDescription) throws java.lang.Exception
java.lang.Exception
public FileType getFileTypeById(java.lang.String fileTypeId) throws java.lang.Exception
java.lang.Exception
public long addCAFileUploadEntry(CAFileUploadEntry fileUploadEntry) throws java.lang.Exception
java.lang.Exception
public long addHybridizationFileUploadEntry(HybridizationFileUploadEntry fileUploadEntry, java.lang.String errorDescription) throws java.lang.Exception
java.lang.Exception
public long addHybridizationFileUploadGroup(HybridizationFileUploadGroup fileUploadGroup) throws java.lang.Exception
java.lang.Exception
public void updateHybridizationFileUploadGroup(HybridizationFileUploadGroup fileUploadGroup) throws java.lang.Exception
java.lang.Exception
public void updateHybridizationFileUploadGroup(HybridizationFileUploadGroup fileUploadGroup, boolean updateFileUploadEntriesWithAnnotations) throws java.lang.Exception
fileUploadGroup
- updateFileUploadEntriesWithAnnotations
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ObjectNotExistException
DBException
java.lang.Exception
public void deleteHybridizationFileUploadGroup(long fileUploadGroupId) throws java.lang.Exception
java.lang.Exception
public HybridizationFileUploadEntry getHybridizationFileUploadEntry(long hybridizationFileUploadEntryId) throws java.lang.Exception
java.lang.Exception
public HybridizationFileUploadEntry[] getAllHybridizationFileUploadEntries() throws java.lang.Exception
java.lang.Exception
public FileUploadEntry getFileUploadEntry(long fileUploadEntryId) throws java.lang.Exception
java.lang.Exception
public HybridizationFileUploadEntry[] getHybridizationFileUploadEntries(long experimentId) throws java.lang.Exception
java.lang.Exception
public void updateHybridizationFileUploadEntry(HybridizationFileUploadEntry fileUploadEntry, boolean updateAnnotations, java.lang.String errorDescription) throws java.lang.Exception
java.lang.Exception
public boolean addHybridizationFileParsingEntryToFileUploadEntry(HybridizationFileUploadEntry fileUploadEntry)
public HybridizationFileParsingEntry getHybridizationFileParsingEntry(long hybridizationFileParsingEntryId) throws java.lang.Exception
java.lang.Exception
public long addHybridizationFileParsingEntry(HybridizationFileParsingEntry fileParsingEntry) throws java.lang.Exception
java.lang.Exception
public void updateHybridizationFileParsingEntry(HybridizationFileParsingEntry fileParsingEntry) throws java.lang.Exception
java.lang.Exception
public ArrayDesignFileUploadGroup getArrayDesignFileUploadGroup(long arrayDesignFileUploadGroupId) throws java.lang.Exception
java.lang.Exception
public ArrayDesignFileUploadGroup getArrayDesignFileUploadGroupByArrayDesign(long arrayDesignId) throws java.lang.Exception
java.lang.Exception
public long addArrayDesignFileUploadGroup(ArrayDesignFileUploadGroup fileUploadGroup) throws java.lang.Exception
java.lang.Exception
public void updateArrayDesignFileUploadGroup(ArrayDesignFileUploadGroup fileUploadGroup) throws java.lang.Exception
java.lang.Exception
public void deleteArrayDesignFileUploadGroup(long fileUploadGroupId) throws java.lang.Exception
java.lang.Exception
public void deleteArrayDesignFileUploadGroupByArrayDesign(long arrayDesignId) throws java.lang.Exception
arrayDesignId
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ObjectNotExistException
ObjectInUseException
DBException
java.lang.Exception
public MAGEMLFileUploadEntry getMAGEMLFileUploadEntry(long fileUploadEntryId) throws java.lang.Exception
java.lang.Exception
public long addMAGEMLFileUploadEntry(MAGEMLFileUploadEntry fileUploadEntry, java.lang.String errorDescription) throws java.lang.Exception
java.lang.Exception
public void updateMAGEMLFileUploadEntry(MAGEMLFileUploadEntry fileUploadEntry, java.lang.String errorDescription) throws java.lang.Exception
java.lang.Exception
public ArrayDesignFileUploadEntry getArrayDesignFileUploadEntry(long fileUploadEntryId) throws java.lang.Exception
java.lang.Exception
public void updateArrayDesignFileUploadEntry(ArrayDesignFileUploadEntry fileUploadEntry, java.lang.String errorDescription) throws java.lang.Exception
java.lang.Exception
public long addArrayDesignFileParsingEntry(ArrayDesignFileParsingEntry fileParsingEntry) throws java.lang.Exception
java.lang.Exception
public void updateArrayDesignFileParsingEntry(ArrayDesignFileParsingEntry fileParsingEntry) throws java.lang.Exception
java.lang.Exception
public java.lang.String[] getHybridizationSoftwareNames()
public boolean updateHybridizationFileUploadEntryFactorValues(long hybridizationUploadEntryId, long[] channelOneFactorValues, long[] channelTwoFactorValues) throws java.lang.Exception
java.lang.Exception
public boolean deleteHybridizationFileUploadEntry(long fileUploadEntryId) throws java.lang.Exception
java.lang.Exception
public boolean deleteAnnotationFromHybridizationFileUploadEntry(long fileUploadEntryId) throws java.lang.Exception
java.lang.Exception
public int countHybridizationFileUploadEntries(long experimentId) throws java.lang.Exception
java.lang.Exception
public void close()
ManagerDB
close
in class ManagerDB
public FileUploadHistory[] getFileHistoryEntries(FileUploadHistorySearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public MAGEMLFileUploadEntry[] getMAGEMLFileEntries(MAGEMLFileUploadSearchCriteria criteria) throws java.lang.Exception
java.lang.Exception
public void formatForView(HybridizationFileUploadEntry entry)
entry
- the upload entry requiring reformatting.public void save(HybridizationFileUploadEntry fileUploadEntry) throws java.lang.Exception
HybridizationFileUploadEntry
without saving
(linking only) any associated MAGE objects.
fileUploadEntry
-
java.lang.Exception
public void save(CAFileUploadEntry entry) throws java.lang.Exception
CAFileUploadEntry
without saving
(linking only) any associated MAGE objects.
entry
-
java.lang.Exception
public ArrayDesignFileUploadEntry getArrayDesignFileUploadEntryByArrayDesignId(long arrayDesignId) throws ObjectNotExistException, java.lang.Exception
ObjectNotExistException
java.lang.Exception
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