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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.BioSequence.SequencePosition
public class SequencePosition
Designates the position of the Feature in its BioSequence.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected java.lang.String |
ojbConcreteClass
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Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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SequencePosition()
Default constructor. |
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SequencePosition(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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boolean |
emptyMAGEobject()
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java.lang.Integer |
getEnd()
Get method for end |
java.lang.String |
getModelClassName()
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java.lang.Integer |
getStart()
Get method for start |
void |
setEnd(java.lang.Integer end)
Set method for end |
void |
setStart(java.lang.Integer start)
Set method for start |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.lang.String ojbConcreteClass
Constructor Detail |
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public SequencePosition()
public SequencePosition(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public void setStart(java.lang.Integer start)
value
- to setpublic java.lang.Integer getStart()
public void setEnd(java.lang.Integer end)
value
- to setpublic java.lang.Integer getEnd()
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
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