org.biomage.QuantitationType
Class PresentAbsent
java.lang.Object
org.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.QuantitationType.QuantitationType
org.biomage.QuantitationType.StandardQuantitationType
org.biomage.QuantitationType.PresentAbsent
- All Implemented Interfaces:
- SecuredElementItf, java.io.Serializable, HasAuditTrail, HasChannel, HasConfidenceIndicators, HasDataType, HasDescriptions, HasPropertySets, HasQuantitationTypeMaps, HasScale, HasSecurity
public class PresentAbsent
- extends StandardQuantitationType
- implements java.io.Serializable
Indicates relative presence or absence. From the enumeration
AbsoluteCallTypeEnum {Present | Absent | Marginal | No call} or
ComparisonCallTypeEnum {Increase I Marginal Increase | Decrease |
Marginal Decrease | No change | No Call | Unknown }, as specified by
the dataType.
- See Also:
- Serialized Form
Method Summary |
boolean |
emptyMAGEobject()
|
java.lang.String |
getModelClassName()
|
void |
setAttributes(org.xml.sax.Attributes atts)
|
void |
writeAssociations(java.io.Writer out)
writeAssociations
This method is responsible for assembling the association data
into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes
This method is responsible for assembling the attribute data into
XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML
This method is responsible for assembling the attribute and
association data into XML. |
Methods inherited from class org.biomage.QuantitationType.QuantitationType |
addToConfidenceIndicators, addToConfidenceIndicators, addToQuantitationTypeMaps, addToQuantitationTypeMaps, getChannel, getConfidenceIndicators, getDataType, getFromConfidenceIndicators, getFromQuantitationTypeMaps, getIsBackground, getQuantitationTypeMaps, getScale, removeElementAtFromConfidenceIndicators, removeElementAtFromQuantitationTypeMaps, removeFromConfidenceIndicators, removeFromQuantitationTypeMaps, setChannel, setConfidenceIndicators, setDataType, setIsBackground, setQuantitationTypeMaps, setScale |
Methods inherited from class org.biomage.Common.Describable |
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
PresentAbsent
public PresentAbsent()
- Default constructor.
PresentAbsent
public PresentAbsent(org.xml.sax.Attributes atts)
- Attribute constructor.
Looks up the attributes in the parameter and casts them from strings
appropriately
- Parameters:
atts:
- the attribute list.
setAttributes
public void setAttributes(org.xml.sax.Attributes atts)
- Overrides:
setAttributes
in class StandardQuantitationType
writeMAGEML
public void writeMAGEML(java.io.Writer out)
throws java.io.IOException
- writeMAGEML
This method is responsible for assembling the attribute and
association data into XML. It creates the object tag and then calls
the writeAttributes and writeAssociation methods.
- Overrides:
writeMAGEML
in class StandardQuantitationType
- Throws:
java.io.IOException
emptyMAGEobject
public boolean emptyMAGEobject()
writeAttributes
public void writeAttributes(java.io.Writer out)
throws java.io.IOException
- writeAttributes
This method is responsible for assembling the attribute data into
XML. It calls the super method to write out all attributes of this
class and it's ancestors.
- Overrides:
writeAttributes
in class StandardQuantitationType
- Throws:
java.io.IOException
writeAssociations
public void writeAssociations(java.io.Writer out)
throws java.io.IOException
- writeAssociations
This method is responsible for assembling the association data
into XML. It calls the super method to write out all associations of
this class's ancestors.
- Overrides:
writeAssociations
in class StandardQuantitationType
- Throws:
java.io.IOException
getModelClassName
public java.lang.String getModelClassName()
- Overrides:
getModelClassName
in class StandardQuantitationType