gov.nih.nci.caarray.services.fileparse2.hybridization
Class AffyCelFileParser

java.lang.Object
  extended by gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileParser
      extended by gov.nih.nci.caarray.services.fileparse2.hybridization.AffyCelFileParser

public class AffyCelFileParser
extends BaseMicroarrayFileParser

This class parses an Affymetrix's .cel data file. This class is almost identical to AffyChpFileParser with the only difference that it extracts GDACProbe from a .cel file while the other extracts GDACCHPProbeSet from a .chp file.

Author:
TranP, gustafsons

Field Summary
 
Fields inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileParser
dataSet_, dataSetMapper_, headerParser_, logger_, parsed_
 
Constructor Summary
AffyCelFileParser(DataSetMapper dataSetMapper)
           
 
Method Summary
 void parse(SequenceInputFile inputFile)
           
 
Methods inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileParser
createDataTableRowBeanClass, getDataSet, getDataSetMapper, readFile, readRows
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

AffyCelFileParser

public AffyCelFileParser(DataSetMapper dataSetMapper)
Method Detail

parse

public void parse(SequenceInputFile inputFile)
           throws java.io.IOException
Specified by:
parse in class BaseMicroarrayFileParser
Throws:
java.io.IOException