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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
public abstract class Describable
Abstract class that allows subclasses to inherit the association to Description, for detailed annotations such as Ontology entries and Database references, the association to Audit, for tracking changes, and the association to Security for indicating permissions.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
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HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
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HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected Security |
security
Information on the security for the instance of the class. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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Describable()
Default constructor. |
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Describable(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToAuditTrail(Audit audit)
Method to add Audit to AuditTrail_list |
void |
addToAuditTrail(int position,
Audit audit)
Method to add Audit at position to AuditTrail_list |
void |
addToDescriptions(Description description)
Method to add Description to Descriptions_list |
void |
addToDescriptions(int position,
Description description)
Method to add Description at position to Descriptions_list |
HasAuditTrail.AuditTrail_list |
getAuditTrail()
Get method for auditTrail |
HasDescriptions.Descriptions_list |
getDescriptions()
Get method for descriptions |
Audit |
getFromAuditTrail(int position)
Method to get Audit from AuditTrail_list |
Description |
getFromDescriptions(int position)
Method to get Description from Descriptions_list |
java.lang.String |
getModelClassName()
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Security |
getSecurity()
Get method for security |
void |
removeElementAtFromAuditTrail(int position)
Method to remove by position from AuditTrail_list |
void |
removeElementAtFromDescriptions(int position)
Method to remove by position from Descriptions_list |
void |
removeFromAuditTrail(Audit audit)
Method to remove first Audit from AuditTrail_list |
void |
removeFromDescriptions(Description description)
Method to remove first Description from Descriptions_list |
void |
setAttributes(org.xml.sax.Attributes atts)
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void |
setAuditTrail(HasAuditTrail.AuditTrail_list auditTrail)
Set method for auditTrail |
void |
setDescriptions(HasDescriptions.Descriptions_list descriptions)
Set method for descriptions |
void |
setSecurity(Security security)
Set method for security |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected Security security
Constructor Detail |
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public Describable()
public Describable(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class Extendable
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setDescriptions(HasDescriptions.Descriptions_list descriptions)
setDescriptions
in interface HasDescriptions
value
- to setpublic HasDescriptions.Descriptions_list getDescriptions()
getDescriptions
in interface HasDescriptions
public void addToDescriptions(Description description)
addToDescriptions
in interface HasDescriptions
public void addToDescriptions(int position, Description description)
addToDescriptions
in interface HasDescriptions
public Description getFromDescriptions(int position)
getFromDescriptions
in interface HasDescriptions
public void removeElementAtFromDescriptions(int position)
removeElementAtFromDescriptions
in interface HasDescriptions
public void removeFromDescriptions(Description description)
removeFromDescriptions
in interface HasDescriptions
public void setAuditTrail(HasAuditTrail.AuditTrail_list auditTrail)
setAuditTrail
in interface HasAuditTrail
value
- to setpublic HasAuditTrail.AuditTrail_list getAuditTrail()
getAuditTrail
in interface HasAuditTrail
public void addToAuditTrail(Audit audit)
addToAuditTrail
in interface HasAuditTrail
public void addToAuditTrail(int position, Audit audit)
addToAuditTrail
in interface HasAuditTrail
public Audit getFromAuditTrail(int position)
getFromAuditTrail
in interface HasAuditTrail
public void removeElementAtFromAuditTrail(int position)
removeElementAtFromAuditTrail
in interface HasAuditTrail
public void removeFromAuditTrail(Audit audit)
removeFromAuditTrail
in interface HasAuditTrail
public void setSecurity(Security security)
setSecurity
in interface HasSecurity
value
- to setpublic Security getSecurity()
getSecurity
in interface HasSecurity
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