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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.BioEvent.BioEvent
org.biomage.BioAssay.BioAssayTreatment
org.biomage.BioAssay.ImageAcquisition
public class ImageAcquisition
The process by which an image is generated (typically scanning).
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasImages |
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HasImages.Images_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasProtocolApplications |
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HasProtocolApplications.ProtocolApplications_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail |
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HasAuditTrail.AuditTrail_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions |
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HasDescriptions.Descriptions_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected java.util.List |
images
The images produced by the ImageAcquisition event. |
Fields inherited from class org.biomage.BioAssay.BioAssayTreatment |
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ojbConcreteClass, physicalBioAssay, target |
Fields inherited from class org.biomage.Common.Describable |
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security |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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ImageAcquisition()
Default constructor. |
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ImageAcquisition(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToImages(Image image)
Method to add Image to Images_list |
void |
addToImages(int position,
Image image)
Method to add Image at position to Images_list |
boolean |
emptyMAGEobject()
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Image |
getFromImages(int position)
Method to get Image from Images_list |
HasImages.Images_list |
getImages()
Get method for images |
java.lang.String |
getModelClassName()
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void |
removeElementAtFromImages(int position)
Method to remove by position from Images_list |
void |
removeFromImages(Image image)
Method to remove first Image from Images_list |
void |
setAttributes(org.xml.sax.Attributes atts)
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void |
setImages(HasImages.Images_list images)
Set method for images |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.BioAssay.BioAssayTreatment |
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getPhysicalBioAssay, getTarget, setPhysicalBioAssay, setTarget |
Methods inherited from class org.biomage.BioEvent.BioEvent |
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addToProtocolApplications, addToProtocolApplications, getFromProtocolApplications, getProtocolApplications, removeElementAtFromProtocolApplications, removeFromProtocolApplications, setProtocolApplications |
Methods inherited from class org.biomage.Common.Identifiable |
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getIdentifier, getName, setIdentifier, setName, toString |
Methods inherited from class org.biomage.Common.Describable |
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addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.util.List images
Constructor Detail |
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public ImageAcquisition()
public ImageAcquisition(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void setAttributes(org.xml.sax.Attributes atts)
setAttributes
in class BioAssayTreatment
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class BioAssayTreatment
java.io.IOException
public boolean emptyMAGEobject()
emptyMAGEobject
in class BioAssayTreatment
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class BioAssayTreatment
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class BioAssayTreatment
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class BioAssayTreatment
public void setImages(HasImages.Images_list images)
setImages
in interface HasImages
value
- to setpublic HasImages.Images_list getImages()
getImages
in interface HasImages
public void addToImages(Image image)
addToImages
in interface HasImages
public void addToImages(int position, Image image)
addToImages
in interface HasImages
public Image getFromImages(int position)
getFromImages
in interface HasImages
public void removeElementAtFromImages(int position)
removeElementAtFromImages
in interface HasImages
public void removeFromImages(Image image)
removeFromImages
in interface HasImages
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