|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Array.ArrayManufactureDeviation
public class ArrayManufactureDeviation
Stores information of the potential difference between an array design and arrays that have been manufactured using that design (e.g. a tip failed to print several spots).
Nested Class Summary |
---|
Nested classes/interfaces inherited from interface org.biomage.Interface.HasFeatureDefects |
---|
HasFeatureDefects.FeatureDefects_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAdjustments |
---|
HasAdjustments.Adjustments_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
---|
HasPropertySets.PropertySets_list |
Field Summary | |
---|---|
protected java.util.List |
adjustments
Descriptions of how a Zone has been printed differently than specified in the ArrayDesign. |
protected java.util.List |
featureDefects
Description on features who are manufactured in a different location than specified in the ArrayDesign. |
Fields inherited from class org.biomage.Common.Extendable |
---|
editable, id, securedElementId |
Constructor Summary | |
---|---|
ArrayManufactureDeviation()
Default constructor. |
|
ArrayManufactureDeviation(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
---|---|
void |
addToAdjustments(int position,
ZoneDefect zoneDefect)
Method to add ZoneDefect at position to Adjustments_list |
void |
addToAdjustments(ZoneDefect zoneDefect)
Method to add ZoneDefect to Adjustments_list |
void |
addToFeatureDefects(FeatureDefect featureDefect)
Method to add FeatureDefect to FeatureDefects_list |
void |
addToFeatureDefects(int position,
FeatureDefect featureDefect)
Method to add FeatureDefect at position to FeatureDefects_list |
boolean |
emptyMAGEobject()
|
HasAdjustments.Adjustments_list |
getAdjustments()
Get method for adjustments |
HasFeatureDefects.FeatureDefects_list |
getFeatureDefects()
Get method for featureDefects |
ZoneDefect |
getFromAdjustments(int position)
Method to get ZoneDefect from Adjustments_list |
FeatureDefect |
getFromFeatureDefects(int position)
Method to get FeatureDefect from FeatureDefects_list |
java.lang.String |
getModelClassName()
|
void |
removeElementAtFromAdjustments(int position)
Method to remove by position from Adjustments_list |
void |
removeElementAtFromFeatureDefects(int position)
Method to remove by position from FeatureDefects_list |
void |
removeFromAdjustments(ZoneDefect zoneDefect)
Method to remove first ZoneDefect from Adjustments_list |
void |
removeFromFeatureDefects(FeatureDefect featureDefect)
Method to remove first FeatureDefect from FeatureDefects_list |
void |
setAdjustments(HasAdjustments.Adjustments_list adjustments)
Set method for adjustments |
void |
setFeatureDefects(HasFeatureDefects.FeatureDefects_list featureDefects)
Set method for featureDefects |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
---|
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
---|
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
---|
protected java.util.List adjustments
protected java.util.List featureDefects
Constructor Detail |
---|
public ArrayManufactureDeviation()
public ArrayManufactureDeviation(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
---|
public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setAdjustments(HasAdjustments.Adjustments_list adjustments)
setAdjustments
in interface HasAdjustments
value
- to setpublic HasAdjustments.Adjustments_list getAdjustments()
getAdjustments
in interface HasAdjustments
public void addToAdjustments(ZoneDefect zoneDefect)
addToAdjustments
in interface HasAdjustments
public void addToAdjustments(int position, ZoneDefect zoneDefect)
addToAdjustments
in interface HasAdjustments
public ZoneDefect getFromAdjustments(int position)
getFromAdjustments
in interface HasAdjustments
public void removeElementAtFromAdjustments(int position)
removeElementAtFromAdjustments
in interface HasAdjustments
public void removeFromAdjustments(ZoneDefect zoneDefect)
removeFromAdjustments
in interface HasAdjustments
public void setFeatureDefects(HasFeatureDefects.FeatureDefects_list featureDefects)
setFeatureDefects
in interface HasFeatureDefects
value
- to setpublic HasFeatureDefects.FeatureDefects_list getFeatureDefects()
getFeatureDefects
in interface HasFeatureDefects
public void addToFeatureDefects(FeatureDefect featureDefect)
addToFeatureDefects
in interface HasFeatureDefects
public void addToFeatureDefects(int position, FeatureDefect featureDefect)
addToFeatureDefects
in interface HasFeatureDefects
public FeatureDefect getFromFeatureDefects(int position)
getFromFeatureDefects
in interface HasFeatureDefects
public void removeElementAtFromFeatureDefects(int position)
removeElementAtFromFeatureDefects
in interface HasFeatureDefects
public void removeFromFeatureDefects(FeatureDefect featureDefect)
removeFromFeatureDefects
in interface HasFeatureDefects
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |