Uses of Package
org.biomage.DesignElement

Packages that use org.biomage.DesignElement
gov.nih.nci.caarray.services.arraydesign   
gov.nih.nci.caarray.services.arraydesign.loader   
gov.nih.nci.caarray.services.fileparse   
gov.nih.nci.caarray.services.fileparse2   
gov.nih.nci.caarray.services.util.netcdf   
org.biomage.Array   
org.biomage.ArrayDesign   
org.biomage.BioAssayData   
org.biomage.Common   
org.biomage.DesignElement   
org.biomage.Interface   
 

Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.arraydesign
CompositeSequence
          A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
 

Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.arraydesign.loader
CompositeSequence
          A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
Feature
          An intended position on an array.
Reporter
          A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
 

Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.fileparse
DesignElement
          An element of an array.
 

Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.fileparse2
DesignElement
          An element of an array.
 

Classes in org.biomage.DesignElement used by gov.nih.nci.caarray.services.util.netcdf
DesignElement
          An element of an array.
 

Classes in org.biomage.DesignElement used by org.biomage.Array
Feature
          An intended position on an array.
Position
          Specifies a position on an array.
 

Classes in org.biomage.DesignElement used by org.biomage.ArrayDesign
CompositeSequence
          A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
Feature
          An intended position on an array.
Reporter
          A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
 

Classes in org.biomage.DesignElement used by org.biomage.BioAssayData
CompositeSequence
          A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
DesignElement
          An element of an array.
Feature
          An intended position on an array.
Reporter
          A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
 

Classes in org.biomage.DesignElement used by org.biomage.Common
DesignElement_package
          The classes of this package are the contained classes of the ArrayDesign and describe through the DesignElements what is intended to be at each location of the Array.
 

Classes in org.biomage.DesignElement used by org.biomage.DesignElement
CompositeCompositeMap
          A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence.
CompositePosition
          The location in the compositeSequence target's sequence to which a source compositeSequence maps.
CompositeSequence
          A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
DesignElement
          An element of an array.
DesignElement_package.CompositeCompositeMap_list
          Inner list class for holding multiple entries for attribute compositeCompositeMap.
DesignElement_package.CompositeSequence_list
          Inner list class for holding multiple entries for attribute compositeSequence.
DesignElement_package.FeatureReporterMap_list
          Inner list class for holding multiple entries for attribute featureReporterMap.
DesignElement_package.Reporter_list
          Inner list class for holding multiple entries for attribute reporter.
DesignElement_package.ReporterCompositeMap_list
          Inner list class for holding multiple entries for attribute reporterCompositeMap.
Feature
          An intended position on an array.
FeatureInformation
          As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter.
FeatureLocation
          Specifies where a feature is located relative to a grid.
FeatureReporterMap
          A FeatureReporterMap is the description of how source features are transformed into a target reporter.
MismatchInformation
          Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence.
Position
          Specifies a position on an array.
Reporter
          A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
ReporterCompositeMap
          A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.
ReporterPosition
          The location in the composite target's sequence to which a source reporter maps.
 

Classes in org.biomage.DesignElement used by org.biomage.Interface
CompositeCompositeMap
          A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence.
CompositePosition
          The location in the compositeSequence target's sequence to which a source compositeSequence maps.
CompositeSequence
          A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
DesignElement
          An element of an array.
Feature
          An intended position on an array.
FeatureInformation
          As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter.
FeatureLocation
          Specifies where a feature is located relative to a grid.
FeatureReporterMap
          A FeatureReporterMap is the description of how source features are transformed into a target reporter.
MismatchInformation
          Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence.
Position
          Specifies a position on an array.
Reporter
          A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
ReporterCompositeMap
          A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.
ReporterPosition
          The location in the composite target's sequence to which a source reporter maps.