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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.Description.Ontology.BioMaterialCharacteristic
public abstract class BioMaterialCharacteristic
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected java.lang.String |
ojbConcreteClass
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Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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BioMaterialCharacteristic()
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BioMaterialCharacteristic(org.xml.sax.Attributes atts)
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Method Summary | |
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abstract void |
addToAssociations(int position,
OntologyEntry ontologyEntry)
Method to add OntologyEntry at position to Associations_list |
abstract void |
addToAssociations(OntologyEntry ontologyEntry)
Method to add OntologyEntry to Associations_list |
protected static OntologyEntry |
createMGEDMeasurementRestriction(java.lang.String restriction,
OntologyEntry value,
OntologyEntry unit)
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abstract HasAssociations.Associations_list |
getAssociations()
Get method for associations |
abstract java.lang.String |
getCategory()
Get method for category |
abstract java.lang.String |
getDescription()
Get method for description |
abstract OntologyEntry |
getFromAssociations(int position)
Method to get OntologyEntry from Associations_list |
abstract DatabaseEntry |
getOntologyReference()
Get method for ontologyReference |
abstract java.lang.String |
getValue()
Get method for value |
abstract void |
removeElementAtFromAssociations(int position)
Method to remove by position from Associations_list |
abstract void |
removeFromAssociations(OntologyEntry ontologyEntry)
Method to remove first OntologyEntry from Associations_list |
abstract void |
setAssociations(HasAssociations.Associations_list associations)
Set method for associations |
abstract void |
setCategory(java.lang.String category)
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abstract void |
setDescription(java.lang.String description)
Set method for description |
abstract void |
setOntologyReference(DatabaseEntry ontologyReference)
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abstract void |
setValue(java.lang.String value)
Set method for value |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getModelClassName, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString, writeAssociations, writeAttributes, writeMAGEML |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.lang.String ojbConcreteClass
Constructor Detail |
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public BioMaterialCharacteristic()
public BioMaterialCharacteristic(org.xml.sax.Attributes atts)
atts
- Method Detail |
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public abstract void setCategory(java.lang.String category)
public abstract java.lang.String getCategory()
public abstract void setValue(java.lang.String value)
value
- to setpublic abstract java.lang.String getValue()
public abstract void setDescription(java.lang.String description)
value
- to setpublic abstract java.lang.String getDescription()
public abstract void setOntologyReference(DatabaseEntry ontologyReference)
public abstract DatabaseEntry getOntologyReference()
public abstract void setAssociations(HasAssociations.Associations_list associations)
value
- to setpublic abstract HasAssociations.Associations_list getAssociations()
public abstract void addToAssociations(OntologyEntry ontologyEntry)
public abstract void addToAssociations(int position, OntologyEntry ontologyEntry)
public abstract OntologyEntry getFromAssociations(int position)
public abstract void removeElementAtFromAssociations(int position)
public abstract void removeFromAssociations(OntologyEntry ontologyEntry)
protected static OntologyEntry createMGEDMeasurementRestriction(java.lang.String restriction, OntologyEntry value, OntologyEntry unit)
restriction
- - e.g. has_measurement, has_maximum_measurementvalue
- - An OntologyEntry
having category=valueunit
- - A MGED OntologyEntry
carrying the unit name
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