Uses of Class
org.biomage.BioAssayData.BioAssayData

Packages that use BioAssayData
gov.nih.nci.caarray.services.bioassaydata   
gov.nih.nci.caarray.services.fileparse2   
gov.nih.nci.caarray.services.mageloader   
org.biomage.BioAssayData   
org.biomage.Experiment   
org.biomage.HigherLevelAnalysis   
org.biomage.Interface   
 

Uses of BioAssayData in gov.nih.nci.caarray.services.bioassaydata
 

Methods in gov.nih.nci.caarray.services.bioassaydata that return BioAssayData
 BioAssayData BioAssayDataInfo.getBioAssayData()
           
 

Constructors in gov.nih.nci.caarray.services.bioassaydata with parameters of type BioAssayData
BioAssayDataInfo(BioAssayData bioAssayData, BioAssay bioAssay, java.io.File dataFile, SourceType sourceType, Array array, Experiment experiment, java.lang.String username)
          Creates a new instance.
 

Uses of BioAssayData in gov.nih.nci.caarray.services.fileparse2
 

Methods in gov.nih.nci.caarray.services.fileparse2 with parameters of type BioAssayData
 void HybridizationManagerDB.saveBioAssayData(BioAssayData bioAssayData)
           
 

Uses of BioAssayData in gov.nih.nci.caarray.services.mageloader
 

Constructors in gov.nih.nci.caarray.services.mageloader with parameters of type BioAssayData
MAGECubeBuilder(BioAssayData data, java.lang.String directory)
          Construtor for a new Cube Builder for MAGE
 

Uses of BioAssayData in org.biomage.BioAssayData
 

Subclasses of BioAssayData in org.biomage.BioAssayData
 class DerivedBioAssayData
          The output of a transformation event.
 class MeasuredBioAssayData
          The data associated with the MeasuredBioAssay produced by FeatureExtraction.
 

Methods in org.biomage.BioAssayData that return BioAssayData
 BioAssayData BioAssayData_package.getFromBioAssayData_list(int position)
          Method to get BioAssayData from BioAssayData_list
 BioAssayData Transformation.getFromBioAssayDataSources(int position)
          Method to get BioAssayData from BioAssayDataSources_list
 

Methods in org.biomage.BioAssayData with parameters of type BioAssayData
 void BioAssayData_package.addToBioAssayData_list(BioAssayData bioAssayData)
          Method to add BioAssayData to BioAssayData_list
 void BioAssayData_package.addToBioAssayData_list(int position, BioAssayData bioAssayData)
          Method to add BioAssayData at position to BioAssayData_list
 void Transformation.addToBioAssayDataSources(BioAssayData bioAssayData)
          Method to add BioAssayData to BioAssayDataSources_list
 void Transformation.addToBioAssayDataSources(int position, BioAssayData bioAssayData)
          Method to add BioAssayData at position to BioAssayDataSources_list
 void BioAssayData_package.removeFromBioAssayData_list(BioAssayData bioAssayData)
          Method to remove first BioAssayData from BioAssayData_list
 void Transformation.removeFromBioAssayDataSources(BioAssayData bioAssayData)
          Method to remove first BioAssayData from BioAssayDataSources_list
 

Uses of BioAssayData in org.biomage.Experiment
 

Methods in org.biomage.Experiment that return BioAssayData
 BioAssayData Experiment.getFromBioAssayData(int position)
          Method to get BioAssayData from BioAssayData_list
 

Methods in org.biomage.Experiment with parameters of type BioAssayData
 void Experiment.addToBioAssayData(BioAssayData bioAssayData)
          Method to add BioAssayData to BioAssayData_list
 void Experiment.addToBioAssayData(int position, BioAssayData bioAssayData)
          Method to add BioAssayData at position to BioAssayData_list
 void Experiment.removeFromBioAssayData(BioAssayData bioAssayData)
          Method to remove first BioAssayData from BioAssayData_list
 

Uses of BioAssayData in org.biomage.HigherLevelAnalysis
 

Fields in org.biomage.HigherLevelAnalysis declared as BioAssayData
protected  BioAssayData BioAssayDataCluster.clusterBioAssayData
          The BioAssayData whose values were used by the cluster algorithm.
 

Methods in org.biomage.HigherLevelAnalysis that return BioAssayData
 BioAssayData BioAssayDataCluster.getClusterBioAssayData()
          Get method for clusterBioAssayData
 

Methods in org.biomage.HigherLevelAnalysis with parameters of type BioAssayData
 void BioAssayDataCluster.setClusterBioAssayData(BioAssayData clusterBioAssayData)
          Set method for clusterBioAssayData
 

Uses of BioAssayData in org.biomage.Interface
 

Methods in org.biomage.Interface that return BioAssayData
 BioAssayData HasClusterBioAssayData.getClusterBioAssayData()
          Get method for clusterBioAssayData
 BioAssayData HasBioAssayData.getFromBioAssayData(int position)
          Method to get BioAssayData from BioAssayData_list
 BioAssayData HasBioAssayDataSources.getFromBioAssayDataSources(int position)
          Method to get BioAssayData from BioAssayDataSources_list
 

Methods in org.biomage.Interface with parameters of type BioAssayData
 void HasBioAssayData.addToBioAssayData(BioAssayData bioAssayData)
          Method to add BioAssayData to BioAssayData_list
 void HasBioAssayData.addToBioAssayData(int position, BioAssayData bioAssayData)
          Method to add BioAssayData at position to BioAssayData_list
 void HasBioAssayDataSources.addToBioAssayDataSources(BioAssayData bioAssayData)
          Method to add BioAssayData to BioAssayDataSources_list
 void HasBioAssayDataSources.addToBioAssayDataSources(int position, BioAssayData bioAssayData)
          Method to add BioAssayData at position to BioAssayDataSources_list
 void HasBioAssayData.removeFromBioAssayData(BioAssayData bioAssayData)
          Method to remove first BioAssayData from BioAssayData_list
 void HasBioAssayDataSources.removeFromBioAssayDataSources(BioAssayData bioAssayData)
          Method to remove first BioAssayData from BioAssayDataSources_list
 void HasClusterBioAssayData.setClusterBioAssayData(BioAssayData clusterBioAssayData)
          Set method for clusterBioAssayData