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java.lang.Objectorg.biomage.Description.Description_package
public class Description_package
The classes in this package allow a variety of references to third party annotation and direct annotation by the experimenter.
Nested Class Summary | |
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class |
Description_package.Database_list
Inner list class for holding multiple entries for attribute database. |
Field Summary | |
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Description_package.Database_list |
database_list
An address to a repository. |
Constructor Summary | |
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Description_package()
Default constructor. |
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Description_package(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToDatabase_list(Database database)
Method to add Database to Database_list |
void |
addToDatabase_list(int position,
Database database)
Method to add Database at position to Database_list |
boolean |
emptyMAGEobject()
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Description_package.Database_list |
getDatabase_list()
Get method for database_list |
Database |
getFromDatabase_list(int position)
Method to get Database from Database_list |
java.lang.String |
getModelClassName()
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void |
removeElementAtFromDatabase_list(int position)
Method to remove by position from Database_list |
void |
removeFromDatabase_list(Database database)
Method to remove first Database from Database_list |
void |
setDatabase_list(Description_package.Database_list database_list)
Set method for database_list |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public Description_package.Database_list database_list
Constructor Detail |
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public Description_package()
public Description_package(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
java.io.IOException
public java.lang.String getModelClassName()
public void setDatabase_list(Description_package.Database_list database_list)
value
- to setpublic Description_package.Database_list getDatabase_list()
public void addToDatabase_list(Database database)
public void addToDatabase_list(int position, Database database)
public Database getFromDatabase_list(int position)
public void removeElementAtFromDatabase_list(int position)
public void removeFromDatabase_list(Database database)
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