org.biomage.Array
Class ManufactureLIMSBiomaterial

java.lang.Object
  extended by org.biomage.Common.Extendable
      extended by org.biomage.Common.Describable
          extended by org.biomage.Array.ManufactureLIMS
              extended by org.biomage.Array.ManufactureLIMSBiomaterial
All Implemented Interfaces:
SecuredElementItf, java.io.Serializable, HasAuditTrail, HasBioMaterial, HasDescriptions, HasFeature, HasIdentifierLIMS, HasPropertySets, HasSecurity

public class ManufactureLIMSBiomaterial
extends ManufactureLIMS
implements java.io.Serializable

Stores the location from which a biomaterial was obtained.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasAuditTrail
HasAuditTrail.AuditTrail_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasDescriptions
HasDescriptions.Descriptions_list
 
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets
HasPropertySets.PropertySets_list
 
Field Summary
 
Fields inherited from class org.biomage.Array.ManufactureLIMS
bioMaterial, feature, identifierLIMS, ojbConcreteClass
 
Fields inherited from class org.biomage.Common.Describable
security
 
Fields inherited from class org.biomage.Common.Extendable
editable, id, securedElementId
 
Constructor Summary
ManufactureLIMSBiomaterial()
          Default constructor.
ManufactureLIMSBiomaterial(org.xml.sax.Attributes atts)
          Attribute constructor.
 
Method Summary
 boolean emptyMAGEobject()
           
 java.lang.String getBioMaterialPlateCol()
          Get method for bioMaterialPlateCol
 java.lang.String getBioMaterialPlateIdentifier()
          Get method for bioMaterialPlateIdentifier
 java.lang.String getBioMaterialPlateRow()
          Get method for bioMaterialPlateRow
 java.lang.String getModelClassName()
           
 void setBioMaterialPlateCol(java.lang.String bioMaterialPlateCol)
          Set method for bioMaterialPlateCol
 void setBioMaterialPlateIdentifier(java.lang.String bioMaterialPlateIdentifier)
          Set method for bioMaterialPlateIdentifier
 void setBioMaterialPlateRow(java.lang.String bioMaterialPlateRow)
          Set method for bioMaterialPlateRow
 void writeAssociations(java.io.Writer out)
          writeAssociations This method is responsible for assembling the association data into XML.
 void writeAttributes(java.io.Writer out)
          writeAttributes This method is responsible for assembling the attribute data into XML.
 void writeMAGEML(java.io.Writer out)
          writeMAGEML This method is responsible for assembling the attribute and association data into XML.
 
Methods inherited from class org.biomage.Array.ManufactureLIMS
getBioMaterial, getFeature, getIdentifierLIMS, getQuality, setBioMaterial, setFeature, setIdentifierLIMS, setQuality
 
Methods inherited from class org.biomage.Common.Describable
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAttributes, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class org.biomage.Common.Extendable
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId, toString
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

ManufactureLIMSBiomaterial

public ManufactureLIMSBiomaterial()
Default constructor.


ManufactureLIMSBiomaterial

public ManufactureLIMSBiomaterial(org.xml.sax.Attributes atts)
Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Parameters:
atts: - the attribute list.
Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException
writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:
writeMAGEML in class ManufactureLIMS
Throws:
java.io.IOException

emptyMAGEobject

public boolean emptyMAGEobject()
Overrides:
emptyMAGEobject in class ManufactureLIMS

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException
writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:
writeAttributes in class ManufactureLIMS
Throws:
java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException
writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:
writeAssociations in class ManufactureLIMS
Throws:
java.io.IOException

setBioMaterialPlateIdentifier

public void setBioMaterialPlateIdentifier(java.lang.String bioMaterialPlateIdentifier)
Set method for bioMaterialPlateIdentifier

Parameters:
value - to set

getBioMaterialPlateIdentifier

public java.lang.String getBioMaterialPlateIdentifier()
Get method for bioMaterialPlateIdentifier

Returns:
value of the attribute

setBioMaterialPlateRow

public void setBioMaterialPlateRow(java.lang.String bioMaterialPlateRow)
Set method for bioMaterialPlateRow

Parameters:
value - to set

getBioMaterialPlateRow

public java.lang.String getBioMaterialPlateRow()
Get method for bioMaterialPlateRow

Returns:
value of the attribute

setBioMaterialPlateCol

public void setBioMaterialPlateCol(java.lang.String bioMaterialPlateCol)
Set method for bioMaterialPlateCol

Parameters:
value - to set

getBioMaterialPlateCol

public java.lang.String getBioMaterialPlateCol()
Get method for bioMaterialPlateCol

Returns:
value of the attribute

getModelClassName

public java.lang.String getModelClassName()
Overrides:
getModelClassName in class ManufactureLIMS