Uses of Class
org.biomage.DesignElement.DesignElement

Packages that use DesignElement
gov.nih.nci.caarray.services.fileparse   
gov.nih.nci.caarray.services.fileparse2   
gov.nih.nci.caarray.services.util.netcdf   
org.biomage.BioAssayData   
org.biomage.DesignElement   
org.biomage.Interface   
 

Uses of DesignElement in gov.nih.nci.caarray.services.fileparse
 

Methods in gov.nih.nci.caarray.services.fileparse that return DesignElement
static DesignElement[] CaArrayToMageConversion.getMageTypesForDesignElements(ParsingDesignElement[] inArray, UploadFileTypes.MICROARRAY_FILE_TYPE type)
           
 

Methods in gov.nih.nci.caarray.services.fileparse with parameters of type DesignElement
 void FileParseManagerDB.createBioAssayData(java.lang.Long bioAssayId, java.lang.Long experimentId, DesignElement[] designElements, QuantitationType[] mageTypes, java.lang.Long arrayDesignId)
           
 

Uses of DesignElement in gov.nih.nci.caarray.services.fileparse2
 

Methods in gov.nih.nci.caarray.services.fileparse2 with parameters of type DesignElement
 void HybridizationManagerDB.createBioAssayData(long bioAssayId, long experimentId, long arrayDesignId, DesignElement[] designElements, QuantitationType[] quantitationTypes)
           
 

Uses of DesignElement in gov.nih.nci.caarray.services.util.netcdf
 

Methods in gov.nih.nci.caarray.services.util.netcdf with parameters of type DesignElement
 java.lang.Object NETCDFFileReader.getBioAssayDatum(BioAssay assay, QuantitationType quantitationType, DesignElement designElement)
           
 

Constructors in gov.nih.nci.caarray.services.util.netcdf with parameters of type DesignElement
NETCDFCreator(DesignElement[] designElementDimension, QuantitationType[] quantitationTypeDimension, BioAssay[] bioAssayDimension)
          Constructs the class with the neccessary items as arrays
 

Uses of DesignElement in org.biomage.BioAssayData
 

Fields in org.biomage.BioAssayData declared as DesignElement
protected  DesignElement DesignElementTuple.designElement
          The DesignElement associated with the value of the BioAssayDatum.
 

Methods in org.biomage.BioAssayData that return DesignElement
 DesignElement DesignElementTuple.getDesignElement()
          Get method for designElement
 

Methods in org.biomage.BioAssayData with parameters of type DesignElement
 void DesignElementTuple.setDesignElement(DesignElement designElement)
          Set method for designElement
 

Uses of DesignElement in org.biomage.DesignElement
 

Subclasses of DesignElement in org.biomage.DesignElement
 class CompositeSequence
          A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
 class Feature
          An intended position on an array.
 class Reporter
          A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
 

Uses of DesignElement in org.biomage.Interface
 

Methods in org.biomage.Interface that return DesignElement
 DesignElement HasDesignElement.getDesignElement()
          Get method for designElement
 

Methods in org.biomage.Interface with parameters of type DesignElement
 void HasDesignElement.setDesignElement(DesignElement designElement)
          Set method for designElement