gov.nih.nci.caarray.services.fileparse2.parsers
Class BaseMicroarrayFileParser
java.lang.Object
gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileParser
- Direct Known Subclasses:
- AffyCelFileParser, AffyChpFileParser, MicroarrayDelimitedFileParser
public abstract class BaseMicroarrayFileParser
- extends java.lang.Object
- Author:
- TranP
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
logger_
protected org.apache.log4j.Logger logger_
- Logger used by this class.
dataSetMapper_
protected DataSetMapper dataSetMapper_
dataSet_
protected DataSet dataSet_
parsed_
protected boolean parsed_
headerParser_
protected BaseMicroarrayFileHeaderParser headerParser_
BaseMicroarrayFileParser
public BaseMicroarrayFileParser(DataSetMapper dataSetMapper)
parse
public abstract void parse(SequenceInputFile inputFile)
throws java.io.IOException
- Throws:
java.io.IOException
readRows
public LocalDynaBean[] readRows()
getDataSet
public DataSet getDataSet()
- Returns:
- Returns the dataSet.
getDataSetMapper
public DataSetMapper getDataSetMapper()
createDataTableRowBeanClass
protected org.apache.commons.beanutils.BasicDynaClass createDataTableRowBeanClass()
readFile
protected static final java.io.File readFile(java.lang.String fileName)
throws java.io.FileNotFoundException
- Throws:
java.io.FileNotFoundException