Uses of Interface
org.biomage.Interface.HasProtocolApplications

Packages that use HasProtocolApplications
org.biomage.Array   
org.biomage.ArrayDesign   
org.biomage.BioAssay   
org.biomage.BioAssayData   
org.biomage.BioEvent   
org.biomage.BioMaterial   
org.biomage.DesignElement   
 

Uses of HasProtocolApplications in org.biomage.Array
 

Classes in org.biomage.Array that implement HasProtocolApplications
 class ArrayManufacture
          Describes the process by which arrays are produced.
 

Uses of HasProtocolApplications in org.biomage.ArrayDesign
 

Classes in org.biomage.ArrayDesign that implement HasProtocolApplications
 class ArrayDesign
          Describes the design of an gene expression layout.
 class PhysicalArrayDesign
          A design that is expected to be used to manufacture physical arrays.
 

Uses of HasProtocolApplications in org.biomage.BioAssay
 

Classes in org.biomage.BioAssay that implement HasProtocolApplications
 class BioAssayCreation
          The process by which an array and one or more biomaterials are combined to create a bioAssayCreation.
 class BioAssayTreatment
          The event which records the process by which PhysicalBioAssays are processed (typically washing, blocking, etc...).
 class FeatureExtraction
          The process by which data is extracted from an image producing a measuredBioAssayData and a measuredBioAssay.
 class Hybridization
          The archetypal bioAssayCreation event, whereby biomaterials are hybridized to an array.
 class ImageAcquisition
          The process by which an image is generated (typically scanning).
 

Uses of HasProtocolApplications in org.biomage.BioAssayData
 

Classes in org.biomage.BioAssayData that implement HasProtocolApplications
 class BioAssayMap
          The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays.
 class DesignElementMap
          A DesignElementMap is the description of how source DesignElements are transformed into a target DesignElement.
 class QuantitationTypeMap
          A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType.
 class Transformation
          The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays.
 

Uses of HasProtocolApplications in org.biomage.BioEvent
 

Classes in org.biomage.BioEvent that implement HasProtocolApplications
 class BioEvent
          An abstract class to capture the concept of an event (either in the laboratory or a computational analysis).
 class Map
          A Map is the description of how sources are transformed into a target.
 

Uses of HasProtocolApplications in org.biomage.BioMaterial
 

Classes in org.biomage.BioMaterial that implement HasProtocolApplications
 class Treatment
          The process by which a biomaterial is created (from source biomaterials).
 

Uses of HasProtocolApplications in org.biomage.DesignElement
 

Classes in org.biomage.DesignElement that implement HasProtocolApplications
 class CompositeCompositeMap
          A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence.
 class FeatureReporterMap
          A FeatureReporterMap is the description of how source features are transformed into a target reporter.
 class ReporterCompositeMap
          A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.