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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.BioAssayData.DesignElementTuple
public class DesignElementTuple
Transformed container to specify a DesignElement and QuantitationTypes for that Element.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasQuantitationTypeTuples |
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HasQuantitationTypeTuples.QuantitationTypeTuples_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected DesignElement |
designElement
The DesignElement associated with the value of the BioAssayDatum. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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DesignElementTuple()
Default constructor. |
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DesignElementTuple(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToQuantitationTypeTuples(int position,
QuantitationTypeTuple quantitationTypeTuple)
Method to add QuantitationTypeTuple at position to QuantitationTypeTuples_list |
void |
addToQuantitationTypeTuples(QuantitationTypeTuple quantitationTypeTuple)
Method to add QuantitationTypeTuple to QuantitationTypeTuples_list |
boolean |
emptyMAGEobject()
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DesignElement |
getDesignElement()
Get method for designElement |
QuantitationTypeTuple |
getFromQuantitationTypeTuples(int position)
Method to get QuantitationTypeTuple from QuantitationTypeTuples_list |
java.lang.String |
getModelClassName()
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HasQuantitationTypeTuples.QuantitationTypeTuples_list |
getQuantitationTypeTuples()
Get method for quantitationTypeTuples |
void |
removeElementAtFromQuantitationTypeTuples(int position)
Method to remove by position from QuantitationTypeTuples_list |
void |
removeFromQuantitationTypeTuples(QuantitationTypeTuple quantitationTypeTuple)
Method to remove first QuantitationTypeTuple from QuantitationTypeTuples_list |
void |
setDesignElement(DesignElement designElement)
Set method for designElement |
void |
setQuantitationTypeTuples(HasQuantitationTypeTuples.QuantitationTypeTuples_list quantitationTypeTuples)
Set method for quantitationTypeTuples |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected DesignElement designElement
Constructor Detail |
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public DesignElementTuple()
public DesignElementTuple(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setDesignElement(DesignElement designElement)
value
- to setpublic DesignElement getDesignElement()
public void setQuantitationTypeTuples(HasQuantitationTypeTuples.QuantitationTypeTuples_list quantitationTypeTuples)
setQuantitationTypeTuples
in interface HasQuantitationTypeTuples
value
- to setpublic HasQuantitationTypeTuples.QuantitationTypeTuples_list getQuantitationTypeTuples()
getQuantitationTypeTuples
in interface HasQuantitationTypeTuples
public void addToQuantitationTypeTuples(QuantitationTypeTuple quantitationTypeTuple)
addToQuantitationTypeTuples
in interface HasQuantitationTypeTuples
public void addToQuantitationTypeTuples(int position, QuantitationTypeTuple quantitationTypeTuple)
addToQuantitationTypeTuples
in interface HasQuantitationTypeTuples
public QuantitationTypeTuple getFromQuantitationTypeTuples(int position)
getFromQuantitationTypeTuples
in interface HasQuantitationTypeTuples
public void removeElementAtFromQuantitationTypeTuples(int position)
removeElementAtFromQuantitationTypeTuples
in interface HasQuantitationTypeTuples
public void removeFromQuantitationTypeTuples(QuantitationTypeTuple quantitationTypeTuple)
removeFromQuantitationTypeTuples
in interface HasQuantitationTypeTuples
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