org.biomage.QuantitationType
Class ConfidenceIndicator
java.lang.Object
org.biomage.Common.Extendable
org.biomage.Common.Describable
org.biomage.Common.Identifiable
org.biomage.QuantitationType.QuantitationType
org.biomage.QuantitationType.StandardQuantitationType
org.biomage.QuantitationType.ConfidenceIndicator
- All Implemented Interfaces:
- SecuredElementItf, java.io.Serializable, HasAuditTrail, HasChannel, HasConfidenceIndicators, HasDataType, HasDescriptions, HasPropertySets, HasQuantitationTypeMaps, HasScale, HasSecurity, HasTargetQuantitationType
- Direct Known Subclasses:
- Error, ExpectedValue, PValue
public abstract class ConfidenceIndicator
- extends StandardQuantitationType
- implements java.io.Serializable, HasTargetQuantitationType
Indication of some measure of confidence for a standard quantitation
type.
- See Also:
- Serialized Form
Methods inherited from class org.biomage.QuantitationType.QuantitationType |
addToConfidenceIndicators, addToConfidenceIndicators, addToQuantitationTypeMaps, addToQuantitationTypeMaps, getChannel, getConfidenceIndicators, getDataType, getFromConfidenceIndicators, getFromQuantitationTypeMaps, getIsBackground, getQuantitationTypeMaps, getScale, removeElementAtFromConfidenceIndicators, removeElementAtFromQuantitationTypeMaps, removeFromConfidenceIndicators, removeFromQuantitationTypeMaps, setChannel, setConfidenceIndicators, setDataType, setIsBackground, setQuantitationTypeMaps, setScale |
Methods inherited from class org.biomage.Common.Describable |
addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity |
Methods inherited from class org.biomage.Common.Extendable |
addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setId, setIsEditable, setPropertySets, setSecuredElementId |
Methods inherited from class java.lang.Object |
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
targetQuantitationType
protected QuantitationType targetQuantitationType
- The association between a ConfidenceIndicator and the
QuantitationType its is an indicator for.
ConfidenceIndicator
public ConfidenceIndicator()
- Default constructor.
ConfidenceIndicator
public ConfidenceIndicator(org.xml.sax.Attributes atts)
- Attribute constructor.
Looks up the attributes in the parameter and casts them from strings
appropriately
- Parameters:
atts:
- the attribute list.
setAttributes
public void setAttributes(org.xml.sax.Attributes atts)
- Overrides:
setAttributes
in class StandardQuantitationType
writeMAGEML
public void writeMAGEML(java.io.Writer out)
throws java.io.IOException
- writeMAGEML
This method is responsible for assembling the attribute and
association data into XML. It creates the object tag and then calls
the writeAttributes and writeAssociation methods.
- Overrides:
writeMAGEML
in class StandardQuantitationType
- Throws:
java.io.IOException
writeAttributes
public void writeAttributes(java.io.Writer out)
throws java.io.IOException
- writeAttributes
This method is responsible for assembling the attribute data into
XML. It calls the super method to write out all attributes of this
class and it's ancestors.
- Overrides:
writeAttributes
in class StandardQuantitationType
- Throws:
java.io.IOException
writeAssociations
public void writeAssociations(java.io.Writer out)
throws java.io.IOException
- writeAssociations
This method is responsible for assembling the association data
into XML. It calls the super method to write out all associations of
this class's ancestors.
- Overrides:
writeAssociations
in class StandardQuantitationType
- Throws:
java.io.IOException
getModelClassName
public java.lang.String getModelClassName()
- Overrides:
getModelClassName
in class StandardQuantitationType
setTargetQuantitationType
public void setTargetQuantitationType(QuantitationType targetQuantitationType)
- Set method for targetQuantitationType
- Specified by:
setTargetQuantitationType
in interface HasTargetQuantitationType
- Parameters:
value
- to set
getTargetQuantitationType
public QuantitationType getTargetQuantitationType()
- Get method for targetQuantitationType
- Specified by:
getTargetQuantitationType
in interface HasTargetQuantitationType
- Returns:
- value of the attribute