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java.lang.Objectorg.biomage.Common.Extendable
org.biomage.BioAssayData.BioAssayMapping
public class BioAssayMapping
Container of the mappings of the input BioAssay dimensions to the output BioAssay dimension.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biomage.Interface.HasBioAssayMaps |
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HasBioAssayMaps.BioAssayMaps_list |
Nested classes/interfaces inherited from interface org.biomage.Interface.HasPropertySets |
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HasPropertySets.PropertySets_list |
Field Summary | |
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protected java.util.List |
bioAssayMaps
The maps for the BioAssays. |
Fields inherited from class org.biomage.Common.Extendable |
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editable, id, securedElementId |
Constructor Summary | |
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BioAssayMapping()
Default constructor. |
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BioAssayMapping(org.xml.sax.Attributes atts)
Attribute constructor. |
Method Summary | |
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void |
addToBioAssayMaps(BioAssayMap bioAssayMap)
Method to add BioAssayMap to BioAssayMaps_list |
void |
addToBioAssayMaps(int position,
BioAssayMap bioAssayMap)
Method to add BioAssayMap at position to BioAssayMaps_list |
boolean |
emptyMAGEobject()
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HasBioAssayMaps.BioAssayMaps_list |
getBioAssayMaps()
Get method for bioAssayMaps |
BioAssayMap |
getFromBioAssayMaps(int position)
Method to get BioAssayMap from BioAssayMaps_list |
java.lang.String |
getModelClassName()
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void |
removeElementAtFromBioAssayMaps(int position)
Method to remove by position from BioAssayMaps_list |
void |
removeFromBioAssayMaps(BioAssayMap bioAssayMap)
Method to remove first BioAssayMap from BioAssayMaps_list |
void |
setBioAssayMaps(HasBioAssayMaps.BioAssayMaps_list bioAssayMaps)
Set method for bioAssayMaps |
void |
writeAssociations(java.io.Writer out)
writeAssociations This method is responsible for assembling the association data into XML. |
void |
writeAttributes(java.io.Writer out)
writeAttributes This method is responsible for assembling the attribute data into XML. |
void |
writeMAGEML(java.io.Writer out)
writeMAGEML This method is responsible for assembling the attribute and association data into XML. |
Methods inherited from class org.biomage.Common.Extendable |
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addToPropertySets, addToPropertySets, equals, getFromPropertySets, getId, getIsEditable, getPropertySets, getSecuredElementId, isEditable, removeElementAtFromPropertySets, removeFromPropertySets, setAttributes, setId, setIsEditable, setPropertySets, setSecuredElementId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected java.util.List bioAssayMaps
Constructor Detail |
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public BioAssayMapping()
public BioAssayMapping(org.xml.sax.Attributes atts)
atts:
- the attribute list.Method Detail |
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public void writeMAGEML(java.io.Writer out) throws java.io.IOException
writeMAGEML
in class Extendable
java.io.IOException
public boolean emptyMAGEobject()
public void writeAttributes(java.io.Writer out) throws java.io.IOException
writeAttributes
in class Extendable
java.io.IOException
public void writeAssociations(java.io.Writer out) throws java.io.IOException
writeAssociations
in class Extendable
java.io.IOException
public java.lang.String getModelClassName()
getModelClassName
in class Extendable
public void setBioAssayMaps(HasBioAssayMaps.BioAssayMaps_list bioAssayMaps)
setBioAssayMaps
in interface HasBioAssayMaps
value
- to setpublic HasBioAssayMaps.BioAssayMaps_list getBioAssayMaps()
getBioAssayMaps
in interface HasBioAssayMaps
public void addToBioAssayMaps(BioAssayMap bioAssayMap)
addToBioAssayMaps
in interface HasBioAssayMaps
public void addToBioAssayMaps(int position, BioAssayMap bioAssayMap)
addToBioAssayMaps
in interface HasBioAssayMaps
public BioAssayMap getFromBioAssayMaps(int position)
getFromBioAssayMaps
in interface HasBioAssayMaps
public void removeElementAtFromBioAssayMaps(int position)
removeElementAtFromBioAssayMaps
in interface HasBioAssayMaps
public void removeFromBioAssayMaps(BioAssayMap bioAssayMap)
removeFromBioAssayMaps
in interface HasBioAssayMaps
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