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java.lang.Objectgov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileParser
gov.nih.nci.caarray.services.fileparse2.hybridization.AffyCelFileParser
public class AffyCelFileParser
This class parses an Affymetrix's .cel data file. This class is almost identical to AffyChpFileParser with the only difference that it extracts GDACProbe from a .cel file while the other extracts GDACCHPProbeSet from a .chp file.
Field Summary |
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Fields inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileParser |
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dataSet_, dataSetMapper_, headerParser_, logger_, parsed_ |
Constructor Summary | |
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AffyCelFileParser(DataSetMapper dataSetMapper)
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Method Summary | |
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void |
parse(SequenceInputFile inputFile)
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Methods inherited from class gov.nih.nci.caarray.services.fileparse2.parsers.BaseMicroarrayFileParser |
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createDataTableRowBeanClass, getDataSet, getDataSetMapper, readFile, readRows |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public AffyCelFileParser(DataSetMapper dataSetMapper)
Method Detail |
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public void parse(SequenceInputFile inputFile) throws java.io.IOException
parse
in class BaseMicroarrayFileParser
java.io.IOException
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