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Uses of DatabaseEntry in org.biomage.Array |
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Fields in org.biomage.Array declared as DatabaseEntry | |
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protected DatabaseEntry |
ManufactureLIMS.identifierLIMS
Association to a LIMS data source for further information on the manufacturing process. |
Methods in org.biomage.Array that return DatabaseEntry | |
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DatabaseEntry |
ManufactureLIMS.getIdentifierLIMS()
Get method for identifierLIMS |
Methods in org.biomage.Array with parameters of type DatabaseEntry | |
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void |
ManufactureLIMS.setIdentifierLIMS(DatabaseEntry identifierLIMS)
Set method for identifierLIMS |
Uses of DatabaseEntry in org.biomage.BioMaterial |
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Fields in org.biomage.BioMaterial declared as DatabaseEntry | |
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protected DatabaseEntry |
Compound.externalLIMS
Reference to an entry in an external LIMS data source. |
Methods in org.biomage.BioMaterial that return DatabaseEntry | |
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DatabaseEntry |
Compound.getExternalLIMS()
Get method for externalLIMS |
Methods in org.biomage.BioMaterial with parameters of type DatabaseEntry | |
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void |
Compound.setExternalLIMS(DatabaseEntry externalLIMS)
Set method for externalLIMS |
Uses of DatabaseEntry in org.biomage.BioSequence |
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Methods in org.biomage.BioSequence that return DatabaseEntry | |
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DatabaseEntry |
BioSequence.getFromSequenceDatabases(int position)
Method to get DatabaseEntry from SequenceDatabases_list |
Methods in org.biomage.BioSequence with parameters of type DatabaseEntry | |
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void |
BioSequence.addToSequenceDatabases(DatabaseEntry databaseEntry)
Method to add DatabaseEntry to SequenceDatabases_list |
void |
BioSequence.addToSequenceDatabases(int position,
DatabaseEntry databaseEntry)
Method to add DatabaseEntry at position to SequenceDatabases_list |
void |
BioSequence.removeFromSequenceDatabases(DatabaseEntry databaseEntry)
Method to remove first DatabaseEntry from SequenceDatabases_list |
Uses of DatabaseEntry in org.biomage.BQS |
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Methods in org.biomage.BQS that return DatabaseEntry | |
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DatabaseEntry |
BibliographicReference.getFromAccessions(int position)
Method to get DatabaseEntry from Accessions_list |
Methods in org.biomage.BQS with parameters of type DatabaseEntry | |
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void |
BibliographicReference.addToAccessions(DatabaseEntry databaseEntry)
Method to add DatabaseEntry to Accessions_list |
void |
BibliographicReference.addToAccessions(int position,
DatabaseEntry databaseEntry)
Method to add DatabaseEntry at position to Accessions_list |
void |
BibliographicReference.removeFromAccessions(DatabaseEntry databaseEntry)
Method to remove first DatabaseEntry from Accessions_list |
Uses of DatabaseEntry in org.biomage.Description |
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Fields in org.biomage.Description declared as DatabaseEntry | |
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protected DatabaseEntry |
OntologyEntry.ontologyReference
Many ontology entries will not yet have formalized ontologies. |
Methods in org.biomage.Description that return DatabaseEntry | |
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DatabaseEntry |
Description.getFromDatabaseReferences(int position)
Method to get DatabaseEntry from DatabaseReferences_list |
DatabaseEntry |
OntologyEntry.getOntologyReference()
Get method for ontologyReference |
Methods in org.biomage.Description with parameters of type DatabaseEntry | |
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void |
Description.addToDatabaseReferences(DatabaseEntry databaseEntry)
Method to add DatabaseEntry to DatabaseReferences_list |
void |
Description.addToDatabaseReferences(int position,
DatabaseEntry databaseEntry)
Method to add DatabaseEntry at position to DatabaseReferences_list |
void |
Description.removeFromDatabaseReferences(DatabaseEntry databaseEntry)
Method to remove first DatabaseEntry from DatabaseReferences_list |
void |
OntologyEntry.setOntologyReference(DatabaseEntry ontologyReference)
Set method for ontologyReference |
Uses of DatabaseEntry in org.biomage.Description.Ontology |
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Methods in org.biomage.Description.Ontology that return DatabaseEntry | |
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abstract DatabaseEntry |
BioMaterialCharacteristic.getOntologyReference()
Get method for ontologyReference |
Methods in org.biomage.Description.Ontology with parameters of type DatabaseEntry | |
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abstract void |
BioMaterialCharacteristic.setOntologyReference(DatabaseEntry ontologyReference)
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Uses of DatabaseEntry in org.biomage.Interface |
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Methods in org.biomage.Interface that return DatabaseEntry | |
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DatabaseEntry |
HasExternalLIMS.getExternalLIMS()
Get method for externalLIMS |
DatabaseEntry |
HasAccessions.getFromAccessions(int position)
Method to get DatabaseEntry from Accessions_list |
DatabaseEntry |
HasDatabaseReferences.getFromDatabaseReferences(int position)
Method to get DatabaseEntry from DatabaseReferences_list |
DatabaseEntry |
HasSequenceDatabases.getFromSequenceDatabases(int position)
Method to get DatabaseEntry from SequenceDatabases_list |
DatabaseEntry |
HasIdentifierLIMS.getIdentifierLIMS()
Get method for identifierLIMS |
DatabaseEntry |
HasOntologyReference.getOntologyReference()
Get method for ontologyReference |
Methods in org.biomage.Interface with parameters of type DatabaseEntry | |
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void |
HasAccessions.addToAccessions(DatabaseEntry databaseEntry)
Method to add DatabaseEntry to Accessions_list |
void |
HasAccessions.addToAccessions(int position,
DatabaseEntry databaseEntry)
Method to add DatabaseEntry at position to Accessions_list |
void |
HasDatabaseReferences.addToDatabaseReferences(DatabaseEntry databaseEntry)
Method to add DatabaseEntry to DatabaseReferences_list |
void |
HasDatabaseReferences.addToDatabaseReferences(int position,
DatabaseEntry databaseEntry)
Method to add DatabaseEntry at position to DatabaseReferences_list |
void |
HasSequenceDatabases.addToSequenceDatabases(DatabaseEntry databaseEntry)
Method to add DatabaseEntry to SequenceDatabases_list |
void |
HasSequenceDatabases.addToSequenceDatabases(int position,
DatabaseEntry databaseEntry)
Method to add DatabaseEntry at position to SequenceDatabases_list |
void |
HasAccessions.removeFromAccessions(DatabaseEntry databaseEntry)
Method to remove first DatabaseEntry from Accessions_list |
void |
HasDatabaseReferences.removeFromDatabaseReferences(DatabaseEntry databaseEntry)
Method to remove first DatabaseEntry from DatabaseReferences_list |
void |
HasSequenceDatabases.removeFromSequenceDatabases(DatabaseEntry databaseEntry)
Method to remove first DatabaseEntry from SequenceDatabases_list |
void |
HasExternalLIMS.setExternalLIMS(DatabaseEntry externalLIMS)
Set method for externalLIMS |
void |
HasIdentifierLIMS.setIdentifierLIMS(DatabaseEntry identifierLIMS)
Set method for identifierLIMS |
void |
HasOntologyReference.setOntologyReference(DatabaseEntry ontologyReference)
Set method for ontologyReference |
Uses of DatabaseEntry in org.biomage.tools.helpers |
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Subclasses of DatabaseEntry in org.biomage.tools.helpers | |
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static class |
MGEDOntologyEntry.OntologyDatabaseEntry
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Methods in org.biomage.tools.helpers that return DatabaseEntry | |
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DatabaseEntry |
OntologyHelper.getOntologyReference(java.lang.String term)
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