Uses of Class
org.biomage.BioMaterial.BioMaterial

Packages that use BioMaterial
gov.nih.nci.caarray.services.biomaterial   
gov.nih.nci.caarray.services.util.dataconverter.test   
org.biomage.Array   
org.biomage.BioMaterial   
org.biomage.Interface   
 

Uses of BioMaterial in gov.nih.nci.caarray.services.biomaterial
 

Methods in gov.nih.nci.caarray.services.biomaterial that return BioMaterial
 BioMaterial BioMaterialManagerDB.getBioMaterial(long id)
          Retrieve a BioMaterial
 BioMaterial[] BioMaterialManagerDB.getBioMaterials(BioMaterialSearchCriteria criteria)
           
protected  BioMaterial[] BioMaterialManagerDB.getBioMaterials(BioMaterialSearchCriteria criteria, java.lang.Class objectClass)
          Get available BioMaterials.
 BioMaterial[] BioMaterialManagerDB.getTopMostSourceBioMaterials(BioMaterial bioMaterial)
          Gets the parents of the specified bio material, which are in most cases bio sources.
 

Methods in gov.nih.nci.caarray.services.biomaterial with parameters of type BioMaterial
 void BioMaterialManagerDB.clearBiomaterialFromCache(BioMaterial bioMaterialToClear)
          Recursively removes a biomaterial and all it's parents from the cache, to be used after copying to make sure you get the latest copy from the database
 long BioMaterialManagerDB.copyBioMaterial(BioMaterial bioMaterialToCopy, java.lang.Class sourceBioMaterialClass, java.lang.String duplicateBioMaterialName, java.lang.String owner)
          Recursively copies the whole biomaterial tree Move heirarchicaly fromtop down.
 BioMaterial[] BioMaterialManagerDB.getTopMostSourceBioMaterials(BioMaterial bioMaterial)
          Gets the parents of the specified bio material, which are in most cases bio sources.
 

Uses of BioMaterial in gov.nih.nci.caarray.services.util.dataconverter.test
 

Methods in gov.nih.nci.caarray.services.util.dataconverter.test with parameters of type BioMaterial
static void TestBioMaterialConversion.compare(BioMaterial material, BioMaterialData data)
           
static void TestBioMaterialConversion.compare(BioMaterial material, BioMaterialDesc desc)
           
 

Uses of BioMaterial in org.biomage.Array
 

Fields in org.biomage.Array declared as BioMaterial
protected  BioMaterial ManufactureLIMS.bioMaterial
          The BioMaterial used for the feature.
 

Methods in org.biomage.Array that return BioMaterial
 BioMaterial ManufactureLIMS.getBioMaterial()
          Get method for bioMaterial
 

Methods in org.biomage.Array with parameters of type BioMaterial
 void ManufactureLIMS.setBioMaterial(BioMaterial bioMaterial)
          Set method for bioMaterial
 

Uses of BioMaterial in org.biomage.BioMaterial
 

Subclasses of BioMaterial in org.biomage.BioMaterial
 class BioSample
          BioSamples are products of treatments that are of interest.
 class BioSource
          The BioSource is the original source material before any treatment events.
 class LabeledExtract
          LabeledExtracts are special BioSamples that have Compounds which are detectable (these are often fluorescent or reactive moieties).
 

Fields in org.biomage.BioMaterial declared as BioMaterial
protected  BioMaterial BioMaterialMeasurement.bioMaterial
          A source BioMaterial for a treatment.
 

Methods in org.biomage.BioMaterial that return BioMaterial
 BioMaterial BioMaterialMeasurement.getBioMaterial()
          Get method for bioMaterial
 BioMaterial BioMaterial_package.getFromBioMaterial_list(int position)
          Method to get BioMaterial from BioMaterial_list
 BioMaterial BioMaterial.getFromTopLevelBioMaterials(int position)
          Method to get Treatment from Treatments_list
 

Methods in org.biomage.BioMaterial with parameters of type BioMaterial
 void BioMaterial_package.addToBioMaterial_list(BioMaterial bioMaterial)
          Method to add BioMaterial to BioMaterial_list
 void BioMaterial_package.addToBioMaterial_list(int position, BioMaterial bioMaterial)
          Method to add BioMaterial at position to BioMaterial_list
 void BioMaterial.addToTopLevelBioMaterials(BioMaterial bioMaterial)
          Method to add Treatment to Treatments_list
 void BioMaterial.addToTopLevelBioMaterials(int position, BioMaterial bioMaterial)
          Method to add Treatment at position to Treatments_list
 void BioMaterial_package.removeFromBioMaterial_list(BioMaterial bioMaterial)
          Method to remove first BioMaterial from BioMaterial_list
 void BioMaterial.removeFromTopLevelBioMaterials(BioMaterial bioMaterial)
          Method to remove first Treatment from Treatments_list
 void BioMaterialMeasurement.setBioMaterial(BioMaterial bioMaterial)
          Set method for bioMaterial
 

Uses of BioMaterial in org.biomage.Interface
 

Methods in org.biomage.Interface that return BioMaterial
 BioMaterial HasBioMaterial.getBioMaterial()
          Get method for bioMaterial
 BioMaterial HasTopBioMaterial.getFromTopLevelBioMaterials(int position)
          Method to get BioMaterial from TopLevelBioMaterials_list
 

Methods in org.biomage.Interface with parameters of type BioMaterial
 void HasTopBioMaterial.addToTopLevelBioMaterials(BioMaterial bioMaterial)
          Method to add BioMaterial to TopLevelBioMaterials_list
 void HasTopBioMaterial.addToTopLevelBioMaterials(int position, BioMaterial bioMaterial)
          Method to add BioMaterial at position to TopLevelBioMaterials_list
 void HasTopBioMaterial.removeFromTopLevelBioMaterials(BioMaterial bioMaterial)
          Method to remove first BioMaterial from TopLevelBioMaterials_list
 void HasBioMaterial.setBioMaterial(BioMaterial bioMaterial)
          Set method for bioMaterial