gov.nih.nci.mageom.domain.BioAssayData.impl
Class DerivedBioAssayDataImpl

java.lang.Object
  extended by gov.nih.nci.mageom.domain.impl.MAGEOMObject
      extended by gov.nih.nci.mageom.domain.impl.ExtendableImpl
          extended by gov.nih.nci.mageom.domain.impl.DescribableImpl
              extended by gov.nih.nci.mageom.domain.impl.IdentifiableImpl
                  extended by gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
                      extended by gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
All Implemented Interfaces:
BioAssayData, DerivedBioAssayData, Describable, Extendable, Identifiable, java.io.Serializable

public class DerivedBioAssayDataImpl
extends BioAssayDataImpl
implements DerivedBioAssayData

The output of a transformation event.

Version:
%I%, %G%
See Also:
Serialized Form

Field Summary
protected static java.util.ArrayList allAssociationMethods
           
protected static java.util.Hashtable associationMethods
           
protected  Transformation producerTransformation
          DOCUMENT ME
protected  java.lang.Long producerTransformationId
          The internal ID of the associated producerTransformation object.
 
Fields inherited from class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
bioAssayDimension, bioAssayDimensionId, bioDataValues, bioDataValuesId, designElementDimension, designElementDimensionId, quantitationTypeDimension, quantitationTypeDimensionId, summaryStatistics, summaryStatisticsCount
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
identifier, name
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
propertySets, propertySetsCount, securedElementId
 
Constructor Summary
DerivedBioAssayDataImpl()
          Default constructor
 
Method Summary
 Transformation getProducerTransformation()
          Returns the value of this DerivedBioAssayData object's producerTransformation attribute.
 java.util.Hashtable getXMLMethodDescriptors()
          Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
protected  void init()
           
 DerivedBioAssayData[] searchDerivedBioAssayDatas(DerivedBioAssayDataSearchCriteria criteria)
          Returns an array of DerivedBioAssayData objects that satisfy the given DerivedBioAssayDataSearchCriteria.
 void setProducerTransformation(Transformation p_producerTransformation)
          Sets the producerTransformation attribute.
 java.lang.String toString()
          Returns a String representation of this object suitable for console display.
 org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc, java.util.ArrayList fillOutValues)
          Returns an XML representation of the object.
 
Methods inherited from class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
getBioAssayDimension, getBioAssayDimensionId, getBioDataValues, getDesignElementDimension, getDesignElementDimensionId, getQuantitationTypeDimension, getSummaryStatistics, getSummaryStatisticsCount, searchBioAssayDatas, setBioAssayDimension, setBioDataValues, setDesignElementDimension, setQuantitationTypeDimension, setSummaryStatistics
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
getIdentifier, getName, searchIdentifiables, setIdentifier, setName
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject
getId, getIsEditable, setId
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
getBioAssayDimension, getBioDataValues, getDesignElementDimension, getQuantitationTypeDimension, getSummaryStatistics, setBioAssayDimension, setBioDataValues, setDesignElementDimension, setQuantitationTypeDimension, setSummaryStatistics
 
Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from interface gov.nih.nci.mageom.domain.Describable
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from interface gov.nih.nci.mageom.domain.Extendable
getPropertySets, setPropertySets
 

Field Detail

allAssociationMethods

protected static java.util.ArrayList allAssociationMethods

associationMethods

protected static java.util.Hashtable associationMethods

producerTransformation

protected Transformation producerTransformation
DOCUMENT ME


producerTransformationId

protected java.lang.Long producerTransformationId
The internal ID of the associated producerTransformation object.

Constructor Detail

DerivedBioAssayDataImpl

public DerivedBioAssayDataImpl()
Default constructor

Method Detail

init

protected void init()
Overrides:
init in class BioAssayDataImpl

searchDerivedBioAssayDatas

public DerivedBioAssayData[] searchDerivedBioAssayDatas(DerivedBioAssayDataSearchCriteria criteria)
                                                 throws gov.nih.nci.common.search.SearchException
Returns an array of DerivedBioAssayData objects that satisfy the given DerivedBioAssayDataSearchCriteria.

Parameters:
criteria - The DerivedBioAssayDataSearchCriteria which represents a query for DerivedBioAssayData objects.
Returns:
An array of DerivedBioAssayData objects.
Throws:
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchException

setProducerTransformation

public void setProducerTransformation(Transformation p_producerTransformation)
Sets the producerTransformation attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a DerivedBioAssayData object.

Specified by:
setProducerTransformation in interface DerivedBioAssayData
Parameters:
p_producerTransformation - The new value for producerTransformation.
See Also:
DerivedBioAssayData.getProducerTransformation()

getProducerTransformation

public Transformation getProducerTransformation()
Description copied from interface: DerivedBioAssayData
Returns the value of this DerivedBioAssayData object's producerTransformation attribute.

Specified by:
getProducerTransformation in interface DerivedBioAssayData
Returns:
gov.nih.nci.mageom.bean.BioAssayData.Transformation The value of producerTransformation.
See Also:
DerivedBioAssayData.getProducerTransformation()

toXML

public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
Overrides:
toXML in class BioAssayDataImpl

toXMLDoc

public org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
Overrides:
toXMLDoc in class BioAssayDataImpl

toXMLProcessor

public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
                                          java.util.ArrayList fillOutValues)
Returns an XML representation of the object. The document is not modified.

Overrides:
toXMLProcessor in class BioAssayDataImpl
Parameters:
doc - the working document
fillOutValues - a list of attribute names that should have full XML for their values.
Returns:
org.w3c.dom.Element an XML representation

getXMLMethodDescriptors

public java.util.Hashtable getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.

Overrides:
getXMLMethodDescriptors in class BioAssayDataImpl
Returns:
Hashtable The Hashtable of descriptors.

toString

public java.lang.String toString()
Returns a String representation of this object suitable for console display.

Overrides:
toString in class BioAssayDataImpl
Returns:
the String representation.