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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
public class DerivedBioAssayImpl
A BioAssay that is created by the Transformation BioEvent from one or more MeasuredBioAssays or DerivedBioAssays.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected DerivedBioAssayData[] |
derivedBioAssayData
DOCUMENT ME |
protected int |
derivedBioAssayDataCount
The count of DerivedBioAssayData objects. |
protected BioAssayMap[] |
derivedBioAssayMap
DOCUMENT ME |
protected int |
derivedBioAssayMapCount
The count of BioAssayMap objects. |
protected OntologyEntry |
type
DOCUMENT ME |
protected java.lang.Long |
typeId
The internal ID of the associated type object. |
| Fields inherited from class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl |
|---|
bioAssayFactorValues, bioAssayFactorValuesCount, channels, channelsCount |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
DerivedBioAssayImpl()
Default constructor |
|
| Method Summary | |
|---|---|
DerivedBioAssayData[] |
getDerivedBioAssayData()
Returns the value of this DerivedBioAssay object's derivedBioAssayData attribute. |
int |
getDerivedBioAssayDataCount()
Returns the count of all DerivedBioAssayData
associated with this DerivedBioAssay object. |
BioAssayMap[] |
getDerivedBioAssayMap()
Returns the value of this DerivedBioAssay object's derivedBioAssayMap attribute. |
int |
getDerivedBioAssayMapCount()
Returns the count of all BioAssayMap
associated with this DerivedBioAssay object. |
OntologyEntry |
getType()
Returns the value of this DerivedBioAssay object's type attribute. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
DerivedBioAssay[] |
searchDerivedBioAssays(DerivedBioAssaySearchCriteria criteria)
Returns an array of DerivedBioAssay objects that
satisfy the given DerivedBioAssaySearchCriteria. |
void |
setDerivedBioAssayData(DerivedBioAssayData[] p_derivedBioAssayData)
Sets the derivedBioAssayData attribute. |
void |
setDerivedBioAssayMap(BioAssayMap[] p_derivedBioAssayMap)
Sets the derivedBioAssayMap attribute. |
void |
setType(OntologyEntry p_type)
Sets the type attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl |
|---|
getBioAssayFactorValues, getBioAssayFactorValuesCount, getChannels, getChannelsCount, searchBioAssays, setBioAssayFactorValues, setChannels |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.BioAssay.BioAssay |
|---|
getBioAssayFactorValues, getChannels, setBioAssayFactorValues, setChannels |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected int derivedBioAssayMapCount
protected BioAssayMap[] derivedBioAssayMap
protected int derivedBioAssayDataCount
protected DerivedBioAssayData[] derivedBioAssayData
protected OntologyEntry type
protected java.lang.Long typeId
| Constructor Detail |
|---|
public DerivedBioAssayImpl()
| Method Detail |
|---|
protected void init()
init in class BioAssayImpl
public DerivedBioAssay[] searchDerivedBioAssays(DerivedBioAssaySearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
DerivedBioAssay objects that
satisfy the given DerivedBioAssaySearchCriteria.
criteria - The DerivedBioAssaySearchCriteria
which represents a query for DerivedBioAssay objects.
DerivedBioAssay objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setDerivedBioAssayMap(BioAssayMap[] p_derivedBioAssayMap)
DerivedBioAssay object.
setDerivedBioAssayMap in interface DerivedBioAssayp_derivedBioAssayMap - The new value for derivedBioAssayMap.DerivedBioAssay.getDerivedBioAssayMap()public BioAssayMap[] getDerivedBioAssayMap()
DerivedBioAssayDerivedBioAssay object's derivedBioAssayMap attribute.
getDerivedBioAssayMap in interface DerivedBioAssaygov.nih.nci.mageom.bean.BioAssayData.BioAssayMap[] The value of derivedBioAssayMap.DerivedBioAssay.getDerivedBioAssayMap()public void setDerivedBioAssayData(DerivedBioAssayData[] p_derivedBioAssayData)
DerivedBioAssay object.
setDerivedBioAssayData in interface DerivedBioAssayp_derivedBioAssayData - The new value for derivedBioAssayData.DerivedBioAssay.getDerivedBioAssayData()public DerivedBioAssayData[] getDerivedBioAssayData()
DerivedBioAssayDerivedBioAssay object's derivedBioAssayData attribute.
getDerivedBioAssayData in interface DerivedBioAssaygov.nih.nci.mageom.bean.BioAssayData.DerivedBioAssayData[] The value of derivedBioAssayData.DerivedBioAssay.getDerivedBioAssayData()public void setType(OntologyEntry p_type)
DerivedBioAssay object.
setType in interface DerivedBioAssayp_type - The new value for type.DerivedBioAssay.getType()public OntologyEntry getType()
DerivedBioAssayDerivedBioAssay object's type attribute.
getType in interface DerivedBioAssaygov.nih.nci.mageom.bean.Description.OntologyEntry The value of type.DerivedBioAssay.getType()public int getDerivedBioAssayMapCount()
BioAssayMap
associated with this DerivedBioAssay object.
DerivedBioAssay.getDerivedBioAssayMap()public int getDerivedBioAssayDataCount()
DerivedBioAssayData
associated with this DerivedBioAssay object.
DerivedBioAssay.getDerivedBioAssayData()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class BioAssayImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class BioAssayImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class BioAssayImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class BioAssayImplpublic java.lang.String toString()
toString in class BioAssayImpl
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