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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
public class TreatmentImpl
The process by which a biomaterial is created (from source biomaterials). Treatments have an order and an action.
| Field Summary | |
|---|---|
protected OntologyEntry |
action
DOCUMENT ME |
protected java.lang.Long |
actionId
The internal ID of the associated action object. |
protected Measurement |
actionMeasurement
The measurement of an action, time exposed, speed of centrifuge, etc. |
protected java.lang.Long |
actionMeasurementId
The internal ID of the associated actionMeasurement object. |
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected CompoundMeasurement[] |
compoundMeasurements
DOCUMENT ME |
protected int |
compoundMeasurementsCount
The count of CompoundMeasurement objects. |
protected java.lang.Integer |
order
The chronological order in which a treatment occurred (in relation to other treatments). |
protected BioMaterialMeasurement[] |
sourceBioMaterialMeasurements
DOCUMENT ME |
protected int |
sourceBioMaterialMeasurementsCount
The count of BioMaterialMeasurement objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl |
|---|
protocolApplications, protocolApplicationsCount |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
TreatmentImpl()
Default constructor |
|
| Method Summary | |
|---|---|
OntologyEntry |
getAction()
Returns the value of this Treatment object's action attribute. |
Measurement |
getActionMeasurement()
Returns the value of this Treatment object's actionMeasurement attribute. |
CompoundMeasurement[] |
getCompoundMeasurements()
Returns the value of this Treatment object's compoundMeasurements attribute. |
int |
getCompoundMeasurementsCount()
Returns the count of all CompoundMeasurement
associated with this Treatment object. |
java.lang.Integer |
getOrder()
Returns the value of this Treatment object's order attribute. |
BioMaterialMeasurement[] |
getSourceBioMaterialMeasurements()
Returns the value of this Treatment object's sourceBioMaterialMeasurements attribute. |
int |
getSourceBioMaterialMeasurementsCount()
Returns the count of all BioMaterialMeasurement
associated with this Treatment object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
Treatment[] |
searchTreatments(TreatmentSearchCriteria criteria)
Returns an array of Treatment objects that
satisfy the given TreatmentSearchCriteria. |
void |
setAction(OntologyEntry p_action)
Sets the action attribute. |
void |
setActionMeasurement(Measurement p_actionMeasurement)
Sets the actionMeasurement attribute. |
void |
setCompoundMeasurements(CompoundMeasurement[] p_compoundMeasurements)
Sets the compoundMeasurements attribute. |
void |
setOrder(java.lang.Integer p_order)
Sets the order attribute. |
void |
setSourceBioMaterialMeasurements(BioMaterialMeasurement[] p_sourceBioMaterialMeasurements)
Sets the sourceBioMaterialMeasurements attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl |
|---|
getProtocolApplications, getProtocolApplicationsCount, searchBioEvents, setProtocolApplications |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.BioEvent.BioEvent |
|---|
getProtocolApplications, setProtocolApplications |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected java.lang.Integer order
protected Measurement actionMeasurement
protected java.lang.Long actionMeasurementId
protected int sourceBioMaterialMeasurementsCount
protected BioMaterialMeasurement[] sourceBioMaterialMeasurements
protected int compoundMeasurementsCount
protected CompoundMeasurement[] compoundMeasurements
protected OntologyEntry action
protected java.lang.Long actionId
| Constructor Detail |
|---|
public TreatmentImpl()
| Method Detail |
|---|
protected void init()
init in class BioEventImpl
public Treatment[] searchTreatments(TreatmentSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
Treatment objects that
satisfy the given TreatmentSearchCriteria.
criteria - The TreatmentSearchCriteria
which represents a query for Treatment objects.
Treatment objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setOrder(java.lang.Integer p_order)
Treatment object.
setOrder in interface Treatmentp_order - The new value for order.Treatment.getOrder()public java.lang.Integer getOrder()
TreatmentTreatment object's order attribute.
Description of order:
The chronological order in which a treatment occurred (in relation to other treatments). More than
one treatment can have the same chronological order indicating that they happened (or were caused
to happen) simultaneously.
getOrder in interface Treatmentint The value of order.Treatment.getOrder()public void setActionMeasurement(Measurement p_actionMeasurement)
Treatment object.
setActionMeasurement in interface Treatmentp_actionMeasurement - The new value for actionMeasurement.Treatment.getActionMeasurement()public Measurement getActionMeasurement()
TreatmentTreatment object's actionMeasurement attribute.
getActionMeasurement in interface Treatmentgov.nih.nci.mageom.bean.Measurement.Measurement The value of actionMeasurement.Treatment.getActionMeasurement()public void setSourceBioMaterialMeasurements(BioMaterialMeasurement[] p_sourceBioMaterialMeasurements)
Treatment object.
setSourceBioMaterialMeasurements in interface Treatmentp_sourceBioMaterialMeasurements - The new value for sourceBioMaterialMeasurements.Treatment.getSourceBioMaterialMeasurements()public BioMaterialMeasurement[] getSourceBioMaterialMeasurements()
TreatmentTreatment object's sourceBioMaterialMeasurements attribute.
getSourceBioMaterialMeasurements in interface Treatmentgov.nih.nci.mageom.bean.BioMaterial.BioMaterialMeasurement[] The value of sourceBioMaterialMeasurements.Treatment.getSourceBioMaterialMeasurements()public void setCompoundMeasurements(CompoundMeasurement[] p_compoundMeasurements)
Treatment object.
setCompoundMeasurements in interface Treatmentp_compoundMeasurements - The new value for compoundMeasurements.Treatment.getCompoundMeasurements()public CompoundMeasurement[] getCompoundMeasurements()
TreatmentTreatment object's compoundMeasurements attribute.
getCompoundMeasurements in interface Treatmentgov.nih.nci.mageom.bean.BioMaterial.CompoundMeasurement[] The value of compoundMeasurements.Treatment.getCompoundMeasurements()public void setAction(OntologyEntry p_action)
Treatment object.
setAction in interface Treatmentp_action - The new value for action.Treatment.getAction()public OntologyEntry getAction()
TreatmentTreatment object's action attribute.
getAction in interface Treatmentgov.nih.nci.mageom.bean.Description.OntologyEntry The value of action.Treatment.getAction()public int getSourceBioMaterialMeasurementsCount()
BioMaterialMeasurement
associated with this Treatment object.
Treatment.getSourceBioMaterialMeasurements()public int getCompoundMeasurementsCount()
CompoundMeasurement
associated with this Treatment object.
Treatment.getCompoundMeasurements()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class BioEventImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class BioEventImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class BioEventImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class BioEventImplpublic java.lang.String toString()
toString in class BioEventImpl
|
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