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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
public class FeatureExtractionImpl
The process by which data is extracted from an image producing a measuredBioAssayData and a measuredBioAssay.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected MeasuredBioAssay |
measuredBioAssayTarget
DOCUMENT ME |
protected java.lang.Long |
measuredBioAssayTargetId
The internal ID of the associated measuredBioAssayTarget object. |
protected PhysicalBioAssay |
physicalBioAssaySource
DOCUMENT ME |
protected java.lang.Long |
physicalBioAssaySourceId
The internal ID of the associated physicalBioAssaySource object. |
| Fields inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl |
|---|
protocolApplications, protocolApplicationsCount |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
FeatureExtractionImpl()
Default constructor |
|
| Method Summary | |
|---|---|
MeasuredBioAssay |
getMeasuredBioAssayTarget()
Returns the value of this FeatureExtraction object's measuredBioAssayTarget attribute. |
PhysicalBioAssay |
getPhysicalBioAssaySource()
Returns the value of this FeatureExtraction object's physicalBioAssaySource attribute. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
FeatureExtraction[] |
searchFeatureExtractions(FeatureExtractionSearchCriteria criteria)
Returns an array of FeatureExtraction objects that
satisfy the given FeatureExtractionSearchCriteria. |
void |
setMeasuredBioAssayTarget(MeasuredBioAssay p_measuredBioAssayTarget)
Sets the measuredBioAssayTarget attribute. |
void |
setPhysicalBioAssaySource(PhysicalBioAssay p_physicalBioAssaySource)
Sets the physicalBioAssaySource attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl |
|---|
getProtocolApplications, getProtocolApplicationsCount, searchBioEvents, setProtocolApplications |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.BioEvent.BioEvent |
|---|
getProtocolApplications, setProtocolApplications |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected PhysicalBioAssay physicalBioAssaySource
protected java.lang.Long physicalBioAssaySourceId
protected MeasuredBioAssay measuredBioAssayTarget
protected java.lang.Long measuredBioAssayTargetId
| Constructor Detail |
|---|
public FeatureExtractionImpl()
| Method Detail |
|---|
protected void init()
init in class BioEventImpl
public FeatureExtraction[] searchFeatureExtractions(FeatureExtractionSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
FeatureExtraction objects that
satisfy the given FeatureExtractionSearchCriteria.
criteria - The FeatureExtractionSearchCriteria
which represents a query for FeatureExtraction objects.
FeatureExtraction objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setPhysicalBioAssaySource(PhysicalBioAssay p_physicalBioAssaySource)
FeatureExtraction object.
setPhysicalBioAssaySource in interface FeatureExtractionp_physicalBioAssaySource - The new value for physicalBioAssaySource.FeatureExtraction.getPhysicalBioAssaySource()public PhysicalBioAssay getPhysicalBioAssaySource()
FeatureExtractionFeatureExtraction object's physicalBioAssaySource attribute.
getPhysicalBioAssaySource in interface FeatureExtractiongov.nih.nci.mageom.bean.BioAssay.PhysicalBioAssay The value of physicalBioAssaySource.FeatureExtraction.getPhysicalBioAssaySource()public void setMeasuredBioAssayTarget(MeasuredBioAssay p_measuredBioAssayTarget)
FeatureExtraction object.
setMeasuredBioAssayTarget in interface FeatureExtractionp_measuredBioAssayTarget - The new value for measuredBioAssayTarget.FeatureExtraction.getMeasuredBioAssayTarget()public MeasuredBioAssay getMeasuredBioAssayTarget()
FeatureExtractionFeatureExtraction object's measuredBioAssayTarget attribute.
getMeasuredBioAssayTarget in interface FeatureExtractiongov.nih.nci.mageom.bean.BioAssay.MeasuredBioAssay The value of measuredBioAssayTarget.FeatureExtraction.getMeasuredBioAssayTarget()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class BioEventImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class BioEventImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class BioEventImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class BioEventImplpublic java.lang.String toString()
toString in class BioEventImpl
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