|
||||||||||
| PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
| SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD | |||||||||
java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
public class FeatureInformationImpl
As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter. Useful for control purposes such as in Affymetrix probe pairs.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected Feature |
feature
DOCUMENT ME |
protected java.lang.Long |
featureId
The internal ID of the associated feature object. |
protected MismatchInformation[] |
mismatchInformation
DOCUMENT ME |
protected int |
mismatchInformationCount
The count of MismatchInformation objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
FeatureInformationImpl()
Default constructor |
|
| Method Summary | |
|---|---|
Feature |
getFeature()
Returns the value of this FeatureInformation object's feature attribute. |
MismatchInformation[] |
getMismatchInformation()
Returns the value of this FeatureInformation object's mismatchInformation attribute. |
int |
getMismatchInformationCount()
Returns the count of all MismatchInformation
associated with this FeatureInformation object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
FeatureInformation[] |
searchFeatureInformations(FeatureInformationSearchCriteria criteria)
Returns an array of FeatureInformation objects that
satisfy the given FeatureInformationSearchCriteria. |
void |
setFeature(Feature p_feature)
Sets the feature attribute. |
void |
setMismatchInformation(MismatchInformation[] p_mismatchInformation)
Sets the mismatchInformation attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected int mismatchInformationCount
protected MismatchInformation[] mismatchInformation
protected Feature feature
protected java.lang.Long featureId
| Constructor Detail |
|---|
public FeatureInformationImpl()
| Method Detail |
|---|
protected void init()
init in class ExtendableImpl
public FeatureInformation[] searchFeatureInformations(FeatureInformationSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
FeatureInformation objects that
satisfy the given FeatureInformationSearchCriteria.
criteria - The FeatureInformationSearchCriteria
which represents a query for FeatureInformation objects.
FeatureInformation objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setMismatchInformation(MismatchInformation[] p_mismatchInformation)
FeatureInformation object.
setMismatchInformation in interface FeatureInformationp_mismatchInformation - The new value for mismatchInformation.FeatureInformation.getMismatchInformation()public MismatchInformation[] getMismatchInformation()
FeatureInformationFeatureInformation object's mismatchInformation attribute.
getMismatchInformation in interface FeatureInformationgov.nih.nci.mageom.bean.DesignElement.MismatchInformation[] The value of mismatchInformation.FeatureInformation.getMismatchInformation()public void setFeature(Feature p_feature)
FeatureInformation object.
setFeature in interface FeatureInformationp_feature - The new value for feature.FeatureInformation.getFeature()public Feature getFeature()
FeatureInformationFeatureInformation object's feature attribute.
getFeature in interface FeatureInformationgov.nih.nci.mageom.bean.DesignElement.Feature The value of feature.FeatureInformation.getFeature()public int getMismatchInformationCount()
MismatchInformation
associated with this FeatureInformation object.
FeatureInformation.getMismatchInformation()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class ExtendableImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class ExtendableImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class ExtendableImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class ExtendableImplpublic java.lang.String toString()
toString in class ExtendableImpl
|
||||||||||
| PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
| SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD | |||||||||