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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
public class DesignElementGroupImpl
The DesignElementGroup holds information on either features, reporters, or compositeSequences, particularly that information that is common between all of the DesignElements contained.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected OntologyEntry |
species
DOCUMENT ME |
protected java.lang.Long |
speciesId
The internal ID of the associated species object. |
protected OntologyEntry[] |
types
DOCUMENT ME |
protected int |
typesCount
The count of OntologyEntry objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
DesignElementGroupImpl()
Default constructor |
|
| Method Summary | |
|---|---|
OntologyEntry |
getSpecies()
Returns the value of this DesignElementGroup object's species attribute. |
OntologyEntry[] |
getTypes()
Returns the value of this DesignElementGroup object's types attribute. |
int |
getTypesCount()
Returns the count of all OntologyEntry
associated with this DesignElementGroup object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
DesignElementGroup[] |
searchDesignElementGroups(DesignElementGroupSearchCriteria criteria)
Returns an array of DesignElementGroup objects that
satisfy the given DesignElementGroupSearchCriteria. |
void |
setSpecies(OntologyEntry p_species)
Sets the species attribute. |
void |
setTypes(OntologyEntry[] p_types)
Sets the types attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected OntologyEntry species
protected java.lang.Long speciesId
protected int typesCount
protected OntologyEntry[] types
| Constructor Detail |
|---|
public DesignElementGroupImpl()
| Method Detail |
|---|
protected void init()
init in class IdentifiableImpl
public DesignElementGroup[] searchDesignElementGroups(DesignElementGroupSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
DesignElementGroup objects that
satisfy the given DesignElementGroupSearchCriteria.
criteria - The DesignElementGroupSearchCriteria
which represents a query for DesignElementGroup objects.
DesignElementGroup objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setSpecies(OntologyEntry p_species)
DesignElementGroup object.
setSpecies in interface DesignElementGroupp_species - The new value for species.DesignElementGroup.getSpecies()public OntologyEntry getSpecies()
DesignElementGroupDesignElementGroup object's species attribute.
getSpecies in interface DesignElementGroupgov.nih.nci.mageom.bean.Description.OntologyEntry The value of species.DesignElementGroup.getSpecies()public void setTypes(OntologyEntry[] p_types)
DesignElementGroup object.
setTypes in interface DesignElementGroupp_types - The new value for types.DesignElementGroup.getTypes()public OntologyEntry[] getTypes()
DesignElementGroupDesignElementGroup object's types attribute.
getTypes in interface DesignElementGroupgov.nih.nci.mageom.bean.Description.OntologyEntry[] The value of types.DesignElementGroup.getTypes()public int getTypesCount()
OntologyEntry
associated with this DesignElementGroup object.
DesignElementGroup.getTypes()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class IdentifiableImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class IdentifiableImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class IdentifiableImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class IdentifiableImplpublic java.lang.String toString()
toString in class IdentifiableImpl
|
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