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public interface CompositeCompositeMap
A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence. For instance, several CompositeSequences could represent different sequence regions for a Gene and could be mapped to different CompositeSequences, each representing a different splice variant for that Gene.
| Method Summary | |
|---|---|
CompositePosition[] |
getCompositePositionSources()
Returns the value of this CompositeCompositeMap object's compositePositionSources attribute. |
CompositeSequence |
getCompositeSequence()
Returns the value of this CompositeCompositeMap object's compositeSequence attribute. |
void |
setCompositePositionSources(CompositePosition[] p_compositePositionSources)
Sets the compositePositionSources attribute. |
void |
setCompositeSequence(CompositeSequence p_compositeSequence)
Sets the compositeSequence attribute. |
| Methods inherited from interface gov.nih.nci.mageom.domain.BioEvent.BioEvent |
|---|
getProtocolApplications, setProtocolApplications |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
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getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
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getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
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getPropertySets, setPropertySets |
| Method Detail |
|---|
void setCompositeSequence(CompositeSequence p_compositeSequence)
CompositeCompositeMap object.
p_compositeSequence - The new value for compositeSequence.getCompositeSequence()CompositeSequence getCompositeSequence()
CompositeCompositeMap object's compositeSequence attribute.
gov.nih.nci.mageom.bean.DesignElement.CompositeSequence The value of compositeSequence.CompositeSequencevoid setCompositePositionSources(CompositePosition[] p_compositePositionSources)
CompositeCompositeMap object.
p_compositePositionSources - The new value for compositePositionSources.getCompositePositionSources()CompositePosition[] getCompositePositionSources()
CompositeCompositeMap object's compositePositionSources attribute.
gov.nih.nci.mageom.bean.DesignElement.CompositePosition[] The value of compositePositionSources.CompositePosition
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