|
||||||||||
| PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
| SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD | |||||||||
java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
public class PhysicalBioAssayImpl
A bioAssay created by the bioAssayCreation event (e.g. in gene expression analysis this event is represented by the hybridization event).
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected BioAssayCreation |
bioAssayCreation
DOCUMENT ME |
protected java.lang.Long |
bioAssayCreationId
The internal ID of the associated bioAssayCreation object. |
protected BioAssayTreatment[] |
bioAssayTreatments
DOCUMENT ME |
protected int |
bioAssayTreatmentsCount
The count of BioAssayTreatment objects. |
protected Image[] |
physicalBioAssayData
DOCUMENT ME |
protected int |
physicalBioAssayDataCount
The count of Image objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl |
|---|
bioAssayFactorValues, bioAssayFactorValuesCount, channels, channelsCount |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
PhysicalBioAssayImpl()
Default constructor |
|
| Method Summary | |
|---|---|
BioAssayCreation |
getBioAssayCreation()
Returns the value of this PhysicalBioAssay object's bioAssayCreation attribute. |
BioAssayTreatment[] |
getBioAssayTreatments()
Returns the value of this PhysicalBioAssay object's bioAssayTreatments attribute. |
int |
getBioAssayTreatmentsCount()
Returns the count of all BioAssayTreatment
associated with this PhysicalBioAssay object. |
Image[] |
getPhysicalBioAssayData()
Returns the value of this PhysicalBioAssay object's physicalBioAssayData attribute. |
int |
getPhysicalBioAssayDataCount()
Returns the count of all Image
associated with this PhysicalBioAssay object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
PhysicalBioAssay[] |
searchPhysicalBioAssays(PhysicalBioAssaySearchCriteria criteria)
Returns an array of PhysicalBioAssay objects that
satisfy the given PhysicalBioAssaySearchCriteria. |
void |
setBioAssayCreation(BioAssayCreation p_bioAssayCreation)
Sets the bioAssayCreation attribute. |
void |
setBioAssayTreatments(BioAssayTreatment[] p_bioAssayTreatments)
Sets the bioAssayTreatments attribute. |
void |
setPhysicalBioAssayData(Image[] p_physicalBioAssayData)
Sets the physicalBioAssayData attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl |
|---|
getBioAssayFactorValues, getBioAssayFactorValuesCount, getChannels, getChannelsCount, searchBioAssays, setBioAssayFactorValues, setChannels |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.BioAssay.BioAssay |
|---|
getBioAssayFactorValues, getChannels, setBioAssayFactorValues, setChannels |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected int physicalBioAssayDataCount
protected Image[] physicalBioAssayData
protected BioAssayCreation bioAssayCreation
protected java.lang.Long bioAssayCreationId
protected int bioAssayTreatmentsCount
protected BioAssayTreatment[] bioAssayTreatments
| Constructor Detail |
|---|
public PhysicalBioAssayImpl()
| Method Detail |
|---|
protected void init()
init in class BioAssayImpl
public PhysicalBioAssay[] searchPhysicalBioAssays(PhysicalBioAssaySearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
PhysicalBioAssay objects that
satisfy the given PhysicalBioAssaySearchCriteria.
criteria - The PhysicalBioAssaySearchCriteria
which represents a query for PhysicalBioAssay objects.
PhysicalBioAssay objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setPhysicalBioAssayData(Image[] p_physicalBioAssayData)
PhysicalBioAssay object.
setPhysicalBioAssayData in interface PhysicalBioAssayp_physicalBioAssayData - The new value for physicalBioAssayData.PhysicalBioAssay.getPhysicalBioAssayData()public Image[] getPhysicalBioAssayData()
PhysicalBioAssayPhysicalBioAssay object's physicalBioAssayData attribute.
getPhysicalBioAssayData in interface PhysicalBioAssaygov.nih.nci.mageom.bean.BioAssay.Image[] The value of physicalBioAssayData.PhysicalBioAssay.getPhysicalBioAssayData()public void setBioAssayCreation(BioAssayCreation p_bioAssayCreation)
PhysicalBioAssay object.
setBioAssayCreation in interface PhysicalBioAssayp_bioAssayCreation - The new value for bioAssayCreation.PhysicalBioAssay.getBioAssayCreation()public BioAssayCreation getBioAssayCreation()
PhysicalBioAssayPhysicalBioAssay object's bioAssayCreation attribute.
getBioAssayCreation in interface PhysicalBioAssaygov.nih.nci.mageom.bean.BioAssay.BioAssayCreation The value of bioAssayCreation.PhysicalBioAssay.getBioAssayCreation()public void setBioAssayTreatments(BioAssayTreatment[] p_bioAssayTreatments)
PhysicalBioAssay object.
setBioAssayTreatments in interface PhysicalBioAssayp_bioAssayTreatments - The new value for bioAssayTreatments.PhysicalBioAssay.getBioAssayTreatments()public BioAssayTreatment[] getBioAssayTreatments()
PhysicalBioAssayPhysicalBioAssay object's bioAssayTreatments attribute.
getBioAssayTreatments in interface PhysicalBioAssaygov.nih.nci.mageom.bean.BioAssay.BioAssayTreatment[] The value of bioAssayTreatments.PhysicalBioAssay.getBioAssayTreatments()public int getPhysicalBioAssayDataCount()
Image
associated with this PhysicalBioAssay object.
PhysicalBioAssay.getPhysicalBioAssayData()public int getBioAssayTreatmentsCount()
BioAssayTreatment
associated with this PhysicalBioAssay object.
PhysicalBioAssay.getBioAssayTreatments()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class BioAssayImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class BioAssayImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class BioAssayImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class BioAssayImplpublic java.lang.String toString()
toString in class BioAssayImpl
|
||||||||||
| PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
| SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD | |||||||||