gov.nih.nci.mageom.domain.BioAssay.impl
Class FeatureExtractionImpl

java.lang.Object
  extended by gov.nih.nci.mageom.domain.impl.MAGEOMObject
      extended by gov.nih.nci.mageom.domain.impl.ExtendableImpl
          extended by gov.nih.nci.mageom.domain.impl.DescribableImpl
              extended by gov.nih.nci.mageom.domain.impl.IdentifiableImpl
                  extended by gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
                      extended by gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
All Implemented Interfaces:
FeatureExtraction, BioEvent, Describable, Extendable, Identifiable, java.io.Serializable

public class FeatureExtractionImpl
extends BioEventImpl
implements FeatureExtraction

The process by which data is extracted from an image producing a measuredBioAssayData and a measuredBioAssay.

Version:
%I%, %G%
See Also:
Serialized Form

Field Summary
protected static java.util.ArrayList allAssociationMethods
           
protected static java.util.Hashtable associationMethods
           
protected  MeasuredBioAssay measuredBioAssayTarget
          DOCUMENT ME
protected  java.lang.Long measuredBioAssayTargetId
          The internal ID of the associated measuredBioAssayTarget object.
protected  PhysicalBioAssay physicalBioAssaySource
          DOCUMENT ME
protected  java.lang.Long physicalBioAssaySourceId
          The internal ID of the associated physicalBioAssaySource object.
 
Fields inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
protocolApplications, protocolApplicationsCount
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
identifier, name
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
propertySets, propertySetsCount, securedElementId
 
Constructor Summary
FeatureExtractionImpl()
          Default constructor
 
Method Summary
 MeasuredBioAssay getMeasuredBioAssayTarget()
          Returns the value of this FeatureExtraction object's measuredBioAssayTarget attribute.
 PhysicalBioAssay getPhysicalBioAssaySource()
          Returns the value of this FeatureExtraction object's physicalBioAssaySource attribute.
 java.util.Hashtable getXMLMethodDescriptors()
          Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
protected  void init()
           
 FeatureExtraction[] searchFeatureExtractions(FeatureExtractionSearchCriteria criteria)
          Returns an array of FeatureExtraction objects that satisfy the given FeatureExtractionSearchCriteria.
 void setMeasuredBioAssayTarget(MeasuredBioAssay p_measuredBioAssayTarget)
          Sets the measuredBioAssayTarget attribute.
 void setPhysicalBioAssaySource(PhysicalBioAssay p_physicalBioAssaySource)
          Sets the physicalBioAssaySource attribute.
 java.lang.String toString()
          Returns a String representation of this object suitable for console display.
 org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc, java.util.ArrayList fillOutValues)
          Returns an XML representation of the object.
 
Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
getProtocolApplications, getProtocolApplicationsCount, searchBioEvents, setProtocolApplications
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
getIdentifier, getName, searchIdentifiables, setIdentifier, setName
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject
getId, getIsEditable, setId
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface gov.nih.nci.mageom.domain.BioEvent.BioEvent
getProtocolApplications, setProtocolApplications
 
Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from interface gov.nih.nci.mageom.domain.Describable
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from interface gov.nih.nci.mageom.domain.Extendable
getPropertySets, setPropertySets
 

Field Detail

allAssociationMethods

protected static java.util.ArrayList allAssociationMethods

associationMethods

protected static java.util.Hashtable associationMethods

physicalBioAssaySource

protected PhysicalBioAssay physicalBioAssaySource
DOCUMENT ME


physicalBioAssaySourceId

protected java.lang.Long physicalBioAssaySourceId
The internal ID of the associated physicalBioAssaySource object.


measuredBioAssayTarget

protected MeasuredBioAssay measuredBioAssayTarget
DOCUMENT ME


measuredBioAssayTargetId

protected java.lang.Long measuredBioAssayTargetId
The internal ID of the associated measuredBioAssayTarget object.

Constructor Detail

FeatureExtractionImpl

public FeatureExtractionImpl()
Default constructor

Method Detail

init

protected void init()
Overrides:
init in class BioEventImpl

searchFeatureExtractions

public FeatureExtraction[] searchFeatureExtractions(FeatureExtractionSearchCriteria criteria)
                                             throws gov.nih.nci.common.search.SearchException
Returns an array of FeatureExtraction objects that satisfy the given FeatureExtractionSearchCriteria.

Parameters:
criteria - The FeatureExtractionSearchCriteria which represents a query for FeatureExtraction objects.
Returns:
An array of FeatureExtraction objects.
Throws:
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchException

setPhysicalBioAssaySource

public void setPhysicalBioAssaySource(PhysicalBioAssay p_physicalBioAssaySource)
Sets the physicalBioAssaySource attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a FeatureExtraction object.

Specified by:
setPhysicalBioAssaySource in interface FeatureExtraction
Parameters:
p_physicalBioAssaySource - The new value for physicalBioAssaySource.
See Also:
FeatureExtraction.getPhysicalBioAssaySource()

getPhysicalBioAssaySource

public PhysicalBioAssay getPhysicalBioAssaySource()
Description copied from interface: FeatureExtraction
Returns the value of this FeatureExtraction object's physicalBioAssaySource attribute.

Specified by:
getPhysicalBioAssaySource in interface FeatureExtraction
Returns:
gov.nih.nci.mageom.bean.BioAssay.PhysicalBioAssay The value of physicalBioAssaySource.
See Also:
FeatureExtraction.getPhysicalBioAssaySource()

setMeasuredBioAssayTarget

public void setMeasuredBioAssayTarget(MeasuredBioAssay p_measuredBioAssayTarget)
Sets the measuredBioAssayTarget attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a FeatureExtraction object.

Specified by:
setMeasuredBioAssayTarget in interface FeatureExtraction
Parameters:
p_measuredBioAssayTarget - The new value for measuredBioAssayTarget.
See Also:
FeatureExtraction.getMeasuredBioAssayTarget()

getMeasuredBioAssayTarget

public MeasuredBioAssay getMeasuredBioAssayTarget()
Description copied from interface: FeatureExtraction
Returns the value of this FeatureExtraction object's measuredBioAssayTarget attribute.

Specified by:
getMeasuredBioAssayTarget in interface FeatureExtraction
Returns:
gov.nih.nci.mageom.bean.BioAssay.MeasuredBioAssay The value of measuredBioAssayTarget.
See Also:
FeatureExtraction.getMeasuredBioAssayTarget()

toXML

public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
Overrides:
toXML in class BioEventImpl

toXMLDoc

public org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
Overrides:
toXMLDoc in class BioEventImpl

toXMLProcessor

public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
                                          java.util.ArrayList fillOutValues)
Returns an XML representation of the object. The document is not modified.

Overrides:
toXMLProcessor in class BioEventImpl
Parameters:
doc - the working document
fillOutValues - a list of attribute names that should have full XML for their values.
Returns:
org.w3c.dom.Element an XML representation

getXMLMethodDescriptors

public java.util.Hashtable getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.

Overrides:
getXMLMethodDescriptors in class BioEventImpl
Returns:
Hashtable The Hashtable of descriptors.

toString

public java.lang.String toString()
Returns a String representation of this object suitable for console display.

Overrides:
toString in class BioEventImpl
Returns:
the String representation.