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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
public class BioAssayImpl
An abstract class which represents both physical and computational groupings of arrays and biomaterials.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected FactorValue[] |
bioAssayFactorValues
DOCUMENT ME |
protected int |
bioAssayFactorValuesCount
The count of FactorValue objects. |
protected Channel[] |
channels
DOCUMENT ME |
protected int |
channelsCount
The count of Channel objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
BioAssayImpl()
Default constructor |
|
| Method Summary | |
|---|---|
FactorValue[] |
getBioAssayFactorValues()
Returns the value of this BioAssay object's bioAssayFactorValues attribute. |
int |
getBioAssayFactorValuesCount()
Returns the count of all FactorValue
associated with this BioAssay object. |
Channel[] |
getChannels()
Returns the value of this BioAssay object's channels attribute. |
int |
getChannelsCount()
Returns the count of all Channel
associated with this BioAssay object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
BioAssay[] |
searchBioAssays(BioAssaySearchCriteria criteria)
Returns an array of BioAssay objects that
satisfy the given BioAssaySearchCriteria. |
void |
setBioAssayFactorValues(FactorValue[] p_bioAssayFactorValues)
Sets the bioAssayFactorValues attribute. |
void |
setChannels(Channel[] p_channels)
Sets the channels attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected int bioAssayFactorValuesCount
protected FactorValue[] bioAssayFactorValues
protected int channelsCount
protected Channel[] channels
| Constructor Detail |
|---|
public BioAssayImpl()
| Method Detail |
|---|
protected void init()
init in class IdentifiableImpl
public BioAssay[] searchBioAssays(BioAssaySearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
BioAssay objects that
satisfy the given BioAssaySearchCriteria.
criteria - The BioAssaySearchCriteria
which represents a query for BioAssay objects.
BioAssay objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setBioAssayFactorValues(FactorValue[] p_bioAssayFactorValues)
BioAssay object.
setBioAssayFactorValues in interface BioAssayp_bioAssayFactorValues - The new value for bioAssayFactorValues.BioAssay.getBioAssayFactorValues()public FactorValue[] getBioAssayFactorValues()
BioAssayBioAssay object's bioAssayFactorValues attribute.
getBioAssayFactorValues in interface BioAssaygov.nih.nci.mageom.bean.Experiment.FactorValue[] The value of bioAssayFactorValues.BioAssay.getBioAssayFactorValues()public void setChannels(Channel[] p_channels)
BioAssay object.
setChannels in interface BioAssayp_channels - The new value for channels.BioAssay.getChannels()public Channel[] getChannels()
BioAssayBioAssay object's channels attribute.
getChannels in interface BioAssaygov.nih.nci.mageom.bean.BioAssay.Channel[] The value of channels.BioAssay.getChannels()public int getBioAssayFactorValuesCount()
FactorValue
associated with this BioAssay object.
BioAssay.getBioAssayFactorValues()public int getChannelsCount()
Channel
associated with this BioAssay object.
BioAssay.getChannels()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class IdentifiableImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class IdentifiableImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class IdentifiableImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class IdentifiableImplpublic java.lang.String toString()
toString in class IdentifiableImpl
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