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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
public class CompositeSequenceDimensionImpl
Specialized DesignElementDimension to hold CompositeSequences.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected CompositeSequence[] |
compositeSequences
DOCUMENT ME |
protected int |
compositeSequencesCount
The count of CompositeSequence objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
CompositeSequenceDimensionImpl()
Default constructor |
|
| Method Summary | |
|---|---|
CompositeSequence[] |
getCompositeSequences()
Returns the value of this CompositeSequenceDimension object's compositeSequences attribute. |
int |
getCompositeSequencesCount()
Returns the count of all CompositeSequence
associated with this CompositeSequenceDimension object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
CompositeSequenceDimension[] |
searchCompositeSequenceDimensions(CompositeSequenceDimensionSearchCriteria criteria)
Returns an array of CompositeSequenceDimension objects that
satisfy the given CompositeSequenceDimensionSearchCriteria. |
void |
setCompositeSequences(CompositeSequence[] p_compositeSequences)
Sets the compositeSequences attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl |
|---|
searchDesignElementDimensions |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected int compositeSequencesCount
protected CompositeSequence[] compositeSequences
| Constructor Detail |
|---|
public CompositeSequenceDimensionImpl()
| Method Detail |
|---|
protected void init()
init in class DesignElementDimensionImpl
public CompositeSequenceDimension[] searchCompositeSequenceDimensions(CompositeSequenceDimensionSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
CompositeSequenceDimension objects that
satisfy the given CompositeSequenceDimensionSearchCriteria.
criteria - The CompositeSequenceDimensionSearchCriteria
which represents a query for CompositeSequenceDimension objects.
CompositeSequenceDimension objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setCompositeSequences(CompositeSequence[] p_compositeSequences)
CompositeSequenceDimension object.
setCompositeSequences in interface CompositeSequenceDimensionp_compositeSequences - The new value for compositeSequences.CompositeSequenceDimension.getCompositeSequences()public CompositeSequence[] getCompositeSequences()
CompositeSequenceDimensionCompositeSequenceDimension object's compositeSequences attribute.
getCompositeSequences in interface CompositeSequenceDimensiongov.nih.nci.mageom.bean.DesignElement.CompositeSequence[] The value of compositeSequences.CompositeSequenceDimension.getCompositeSequences()public int getCompositeSequencesCount()
CompositeSequence
associated with this CompositeSequenceDimension object.
CompositeSequenceDimension.getCompositeSequences()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class DesignElementDimensionImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class DesignElementDimensionImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class DesignElementDimensionImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class DesignElementDimensionImplpublic java.lang.String toString()
toString in class DesignElementDimensionImpl
|
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