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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
public class PhysicalArrayDesignImpl
A design that is expected to be used to manufacture physical arrays.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected OntologyEntry |
surfaceType
DOCUMENT ME |
protected java.lang.Long |
surfaceTypeId
The internal ID of the associated surfaceType object. |
protected ZoneGroup[] |
zoneGroups
DOCUMENT ME |
protected int |
zoneGroupsCount
The count of ZoneGroup objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl |
|---|
compositeGroups, compositeGroupsCount, designProviders, designProvidersCount, featureGroups, featureGroupsCount, numberOfFeatures, protocolApplications, protocolApplicationsCount, reporterGroups, reporterGroupsCount, version |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
PhysicalArrayDesignImpl()
Default constructor |
|
| Method Summary | |
|---|---|
OntologyEntry |
getSurfaceType()
Returns the value of this PhysicalArrayDesign object's surfaceType attribute. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
ZoneGroup[] |
getZoneGroups()
Returns the value of this PhysicalArrayDesign object's zoneGroups attribute. |
int |
getZoneGroupsCount()
Returns the count of all ZoneGroup
associated with this PhysicalArrayDesign object. |
protected void |
init()
|
PhysicalArrayDesign[] |
searchPhysicalArrayDesigns(PhysicalArrayDesignSearchCriteria criteria)
Returns an array of PhysicalArrayDesign objects that
satisfy the given PhysicalArrayDesignSearchCriteria. |
void |
setSurfaceType(OntologyEntry p_surfaceType)
Sets the surfaceType attribute. |
void |
setZoneGroups(ZoneGroup[] p_zoneGroups)
Sets the zoneGroups attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl |
|---|
getCompositeGroups, getCompositeGroupsCount, getDesignProviders, getDesignProvidersCount, getFeatureGroups, getFeatureGroupsCount, getNumberOfFeatures, getProtocolApplications, getProtocolApplicationsCount, getReporterGroups, getReporterGroupsCount, getVersion, searchArrayDesigns, setCompositeGroups, setDesignProviders, setFeatureGroups, setNumberOfFeatures, setProtocolApplications, setReporterGroups, setVersion |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign |
|---|
getCompositeGroups, getDesignProviders, getFeatureGroups, getNumberOfFeatures, getProtocolApplications, getReporterGroups, getVersion, setCompositeGroups, setDesignProviders, setFeatureGroups, setNumberOfFeatures, setProtocolApplications, setReporterGroups, setVersion |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected int zoneGroupsCount
protected ZoneGroup[] zoneGroups
protected OntologyEntry surfaceType
protected java.lang.Long surfaceTypeId
| Constructor Detail |
|---|
public PhysicalArrayDesignImpl()
| Method Detail |
|---|
protected void init()
init in class ArrayDesignImpl
public PhysicalArrayDesign[] searchPhysicalArrayDesigns(PhysicalArrayDesignSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
PhysicalArrayDesign objects that
satisfy the given PhysicalArrayDesignSearchCriteria.
criteria - The PhysicalArrayDesignSearchCriteria
which represents a query for PhysicalArrayDesign objects.
PhysicalArrayDesign objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setZoneGroups(ZoneGroup[] p_zoneGroups)
PhysicalArrayDesign object.
setZoneGroups in interface PhysicalArrayDesignp_zoneGroups - The new value for zoneGroups.PhysicalArrayDesign.getZoneGroups()public ZoneGroup[] getZoneGroups()
PhysicalArrayDesignPhysicalArrayDesign object's zoneGroups attribute.
getZoneGroups in interface PhysicalArrayDesigngov.nih.nci.mageom.bean.ArrayDesign.ZoneGroup[] The value of zoneGroups.PhysicalArrayDesign.getZoneGroups()public void setSurfaceType(OntologyEntry p_surfaceType)
PhysicalArrayDesign object.
setSurfaceType in interface PhysicalArrayDesignp_surfaceType - The new value for surfaceType.PhysicalArrayDesign.getSurfaceType()public OntologyEntry getSurfaceType()
PhysicalArrayDesignPhysicalArrayDesign object's surfaceType attribute.
getSurfaceType in interface PhysicalArrayDesigngov.nih.nci.mageom.bean.Description.OntologyEntry The value of surfaceType.PhysicalArrayDesign.getSurfaceType()public int getZoneGroupsCount()
ZoneGroup
associated with this PhysicalArrayDesign object.
PhysicalArrayDesign.getZoneGroups()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class ArrayDesignImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class ArrayDesignImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class ArrayDesignImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class ArrayDesignImplpublic java.lang.String toString()
toString in class ArrayDesignImpl
|
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