Serialized Form


Package gov.nih.nci.caarray.services.util.ojb.conversions

Class gov.nih.nci.caarray.services.util.ojb.conversions.Action2StringFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.Basis2StringFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.Boolean2IntFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.KindCV2StringFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.Long2LongObjectFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.Order2StringFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.OrientationMarkPosition2StringFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.SourceType2StringFieldConversion extends java.lang.Object implements Serializable

serialVersionUID: 8346405256667832336L

Class gov.nih.nci.caarray.services.util.ojb.conversions.Type2StringFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.UnitNameCV2StringFieldConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.caarray.services.util.ojb.conversions.Value2StringFieldConversion extends java.lang.Object implements Serializable


Package gov.nih.nci.common.persistence

Class gov.nih.nci.common.persistence.DefaultValueCache extends java.lang.Object implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_beanName

java.lang.String _beanName

_attributeName

java.lang.String _attributeName

_valColName

java.lang.String _valColName

_sessionId

java.lang.String _sessionId

_values

java.util.HashSet<E> _values

Class gov.nih.nci.common.persistence.PersistenceException extends gov.nih.nci.common.exception.ManagerException implements Serializable


Package gov.nih.nci.common.persistence.conversions

Class gov.nih.nci.common.persistence.conversions.BN2BoolConv extends java.lang.Object implements Serializable

Class gov.nih.nci.common.persistence.conversions.Double2FloatConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.common.persistence.conversions.String2ClobConversion extends java.lang.Object implements Serializable

Class gov.nih.nci.common.persistence.conversions.String2DateConversion extends java.lang.Object implements Serializable


Package gov.nih.nci.common.process

Class gov.nih.nci.common.process.QueryHandlerException extends java.lang.Exception implements Serializable


Package gov.nih.nci.common.query

Class gov.nih.nci.common.query.BooleanOperationEnum extends java.lang.Object implements Serializable

Serialized Fields

value

java.lang.String value

Class gov.nih.nci.common.query.ConditionalEnum extends java.lang.Object implements Serializable

Serialized Fields

value

java.lang.String value

Class gov.nih.nci.common.query.FetchPath extends java.lang.Object implements Serializable

Serialized Fields

name

java.lang.String name

fetchPath

java.util.Collection<E> fetchPath

Class gov.nih.nci.common.query.OrderByField extends java.lang.Object implements Serializable

Serialized Fields

name

java.lang.String name

ascending

boolean ascending

Class gov.nih.nci.common.query.QueryFactory extends java.lang.Object implements Serializable

Class gov.nih.nci.common.query.SubClassFetchPath extends FetchPath implements Serializable

Serialized Fields

queryName

java.lang.String queryName

Package gov.nih.nci.common.query.impl

Class gov.nih.nci.common.query.impl.AssociationCriterionImpl extends java.lang.Object implements Serializable

Serialized Fields

name

java.lang.String name

query

Query query

negative

boolean negative

Class gov.nih.nci.common.query.impl.CriterionGroupImpl extends java.lang.Object implements Serializable

Serialized Fields

booleanOperation

BooleanOperationEnum booleanOperation

criterion

java.util.Collection<E> criterion

associationCriterion

java.util.Collection<E> associationCriterion

subCriterionGroup

java.util.Collection<E> subCriterionGroup

Class gov.nih.nci.common.query.impl.CriterionImpl extends java.lang.Object implements Serializable

Serialized Fields

name

java.lang.String name

conditional

ConditionalEnum conditional

value

java.util.Collection<E> value

negative

boolean negative

caseInsensitive

boolean caseInsensitive

Class gov.nih.nci.common.query.impl.QueryImpl extends java.lang.Object implements Serializable

Serialized Fields

name

java.lang.String name

criterionGroup

java.util.Collection<E> criterionGroup

prefetchPath

java.util.Collection<E> prefetchPath

orderBy

java.util.Collection<E> orderBy

startAt

int startAt

maxResultSize

int maxResultSize

Package gov.nih.nci.common.remote.rmi

Class gov.nih.nci.common.remote.rmi.RMIObjectManagerProxy extends java.lang.Object implements Serializable

Class gov.nih.nci.common.remote.rmi.RMIObjectManagerRemote extends java.rmi.server.UnicastRemoteObject implements Serializable

Class gov.nih.nci.common.remote.rmi.RMIObjectManagerRemote_Stub extends java.rmi.server.RemoteStub implements Serializable

serialVersionUID: 2L

Class gov.nih.nci.common.remote.rmi.RMIPersistenceManagerProxy extends java.lang.Object implements Serializable

Class gov.nih.nci.common.remote.rmi.RMIPersistenceManagerRemote extends java.rmi.server.UnicastRemoteObject implements Serializable

Class gov.nih.nci.common.remote.rmi.RMIPersistenceManagerRemote_Stub extends java.rmi.server.RemoteStub implements Serializable

serialVersionUID: 2L

Class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy extends java.lang.Object implements Serializable

Serialized Fields

_searchLocation

java.lang.String _searchLocation

Class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerRemote extends java.rmi.server.UnicastRemoteObject implements Serializable

Class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy extends java.lang.Object implements Serializable

Serialized Fields

_instanceMgr

RMISecureSessionManagerRemoteIF _instanceMgr

Class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemote extends java.rmi.server.UnicastRemoteObject implements Serializable


Package gov.nih.nci.common.search

Class gov.nih.nci.common.search._DummySearchCriteria extends gov.nih.nci.common.search.SearchCriteria implements Serializable

Class gov.nih.nci.common.search.AssociationCriterion extends java.lang.Object implements Serializable

Serialized Fields

_name

java.lang.String _name

_criteria

gov.nih.nci.common.search.SearchCriteria _criteria

Class gov.nih.nci.common.search.AttributeCriterion extends java.lang.Object implements Serializable

Serialized Fields

_name

java.lang.String _name

_conditional

int _conditional

_values

java.util.Collection<E> _values

_caseInsensitive

boolean _caseInsensitive

Class gov.nih.nci.common.search.CriteriaElement extends java.lang.Object implements Serializable

serialVersionUID: -2633597343710997012L

Serialized Fields

name

java.lang.String name

criteria

java.lang.Object criteria

caseInsensitive

boolean caseInsensitive

booleanOp

java.lang.String booleanOp

Class gov.nih.nci.common.search.CriteriaGroup extends java.lang.Object implements Serializable

Serialized Fields

_booleanOp

int _booleanOp

_criteria

java.util.Collection<E> _criteria

Class gov.nih.nci.common.search.DefaultSearchSession extends java.lang.Object implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_sessionId

java.lang.String _sessionId

_startTime

long _startTime

_vcIndex

java.util.HashMap<K,V> _vcIndex

Class gov.nih.nci.common.search.EVSOntologyRelationshipSearchCriteria extends gov.nih.nci.common.search.SearchCriteria implements Serializable

Class gov.nih.nci.common.search.EVSOntologySearchCriteria extends gov.nih.nci.common.search.SearchCriteria implements Serializable

Class gov.nih.nci.common.search.InvalidCriterionException extends gov.nih.nci.common.exception.BaseException implements Serializable

Class gov.nih.nci.common.search.OntologicalCriterion extends gov.nih.nci.common.search.AttributeCriterion implements Serializable

Class gov.nih.nci.common.search.RangeCriterion extends gov.nih.nci.common.search.AttributeCriterion implements Serializable

Serialized Fields

_rangeStart

java.lang.Object _rangeStart

_rangeEnd

java.lang.Object _rangeEnd

Class gov.nih.nci.common.search.RuntimeSearchException extends java.lang.RuntimeException implements Serializable

Class gov.nih.nci.common.search.SCUtils extends java.lang.Object implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.common.search.SearchCriteria extends gov.nih.nci.caBIO.util.PermissionObject implements Serializable

serialVersionUID: -5073636467121055993L

Serialized Fields

_sessionId

java.lang.String _sessionId

myObjects

java.lang.Object[] myObjects

fillInObjects

java.lang.String[] fillInObjects

fillInAllObjects

java.lang.Boolean fillInAllObjects

criteriaCollection

java.util.Vector<E> criteriaCollection

orderBy

java.lang.String orderBy

beanClassName

java.lang.String beanClassName

startAt

java.lang.Integer startAt

returnCount

java.lang.Boolean returnCount

returnObjects

java.lang.Boolean returnObjects

maxRecordset

java.lang.Integer maxRecordset

_ands

java.util.Collection<E> _ands

_ors

java.util.Collection<E> _ors

_groups

java.util.Collection<E> _groups

Class gov.nih.nci.common.search.SearchException extends gov.nih.nci.common.exception.BaseException implements Serializable

Class gov.nih.nci.common.search.SearchResult extends java.lang.Object implements Serializable

serialVersionUID: -5680022174776778550L

Serialized Fields

hasMore

boolean hasMore

startsAt

java.lang.Integer startsAt

endsAt

java.lang.Integer endsAt

count

java.lang.Integer count

resultSet

java.lang.Object[] resultSet

nextCriteria

gov.nih.nci.common.search.SearchCriteria nextCriteria

Package gov.nih.nci.common.search.session

Class gov.nih.nci.common.search.session.SecureSessionImpl extends java.lang.Object implements Serializable

Serialized Fields

_sessionId

java.lang.String _sessionId

_startTime

long _startTime

_active

boolean _active

Class gov.nih.nci.common.search.session.SessionException extends java.lang.RuntimeException implements Serializable


Package gov.nih.nci.common.util

Class gov.nih.nci.common.util.Credential extends java.util.HashMap implements Serializable

Serialized Fields

id_

int id_

name_

java.lang.String name_

description_

java.lang.String description_

itemCategoryMap_

java.util.HashMap<K,V> itemCategoryMap_

criteriaAggregate_

java.util.HashMap<K,V> criteriaAggregate_

Package gov.nih.nci.mageom.domain.Array.impl

Class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

barcode

java.lang.String barcode
Identifier for the ArrayGroup.


arraySpacingX

java.lang.Float arraySpacingX
If there exist more than one array on a slide or a chip, then the spacing between the arrays is so that scanning / feature extraction software can crop images representing 1 unique


arraySpacingY

java.lang.Float arraySpacingY
If there exist more than one array on a slide or a chip, then the spacing between the arrays is so that scanning / feature extraction software can crop images representing 1 unique


numArrays

java.lang.Integer numArrays
This attribute defines the number of arrays on a chip or a slide.


orientationMark

java.lang.String orientationMark
For a human to determine where the top left side of the array is, such as a barcode or frosted side the glass, etc.


orientationMarkPosition

java.lang.String orientationMarkPosition
One of top, bottom, left or right.


width

java.lang.Float width
The width of the platform


length

java.lang.Float length
The length of the platform.


arraysCount

int arraysCount
The count of Array objects.


arrays

Array[] arrays
DOCUMENT ME


fiducialsCount

int fiducialsCount
The count of Fiducial objects.


fiducials

Fiducial[] fiducials
DOCUMENT ME


distanceUnit

DistanceUnit distanceUnit
DOCUMENT ME


distanceUnitId

java.lang.Long distanceUnitId
The internal ID of the associated distanceUnit object.


substrateType

OntologyEntry substrateType
DOCUMENT ME


substrateTypeId

java.lang.Long substrateTypeId
The internal ID of the associated substrateType object.

Class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

arrayIdentifier

java.lang.String arrayIdentifier
An identifying string, e.g. a barcode.


arrayXOrigin

java.lang.Float arrayXOrigin
This can indicate the x position on a slide, chip, etc. of the first Feature and is usually relative to the fiducial.


arrayYOrigin

java.lang.Float arrayYOrigin
This can indicate the y position on a slide, chip, etc. of the first Feature and is usually relative to the fiducial.


originRelativeTo

java.lang.String originRelativeTo
What the array origin is relative to, e.g. upper left corner, fiducial, etc.


arrayDesign

ArrayDesign arrayDesign
DOCUMENT ME


arrayDesignId

java.lang.Long arrayDesignId
The internal ID of the associated arrayDesign object.


arrayGroup

ArrayGroup arrayGroup
DOCUMENT ME


arrayGroupId

java.lang.Long arrayGroupId
The internal ID of the associated arrayGroup object.


information

ArrayManufacture information
DOCUMENT ME


informationId

java.lang.Long informationId
The internal ID of the associated information object.


arrayManufactureDeviationsCount

int arrayManufactureDeviationsCount
The count of ArrayManufactureDeviation objects.


arrayManufactureDeviations

ArrayManufactureDeviation[] arrayManufactureDeviations
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

featureDefectsCount

int featureDefectsCount
The count of FeatureDefect objects.


featureDefects

FeatureDefect[] featureDefects
DOCUMENT ME


adjustmentsCount

int adjustmentsCount
The count of ZoneDefect objects.


adjustments

ZoneDefect[] adjustments
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

manufacturingDate

java.lang.String manufacturingDate
The date the arrays were manufactured


tolerance

java.lang.Float tolerance
The allowable error of a feature printed to its intended position.


arraysCount

int arraysCount
The count of Array objects.


arrays

Array[] arrays
DOCUMENT ME


protocolApplicationsCount

int protocolApplicationsCount
The count of ProtocolApplication objects.


protocolApplications

ProtocolApplication[] protocolApplications
DOCUMENT ME


featureLIMSsCount

int featureLIMSsCount
The count of ManufactureLIMS objects.


featureLIMSs

ManufactureLIMS[] featureLIMSs
DOCUMENT ME


arrayManufacturersCount

int arrayManufacturersCount
The count of Contact objects.


arrayManufacturers

Contact[] arrayManufacturers
DOCUMENT ME


qualityControlStatisticsCount

int qualityControlStatisticsCount
The count of NameValueType objects.


qualityControlStatistics

NameValueType[] qualityControlStatistics
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

positionDelta

PositionDelta positionDelta
DOCUMENT ME


positionDeltaId

java.lang.Long positionDeltaId
The internal ID of the associated positionDelta object.


feature

Feature feature
DOCUMENT ME


featureId

java.lang.Long featureId
The internal ID of the associated feature object.


defectType

OntologyEntry defectType
DOCUMENT ME


defectTypeId

java.lang.Long defectTypeId
The internal ID of the associated defectType object.

Class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

distanceUnit

DistanceUnit distanceUnit
DOCUMENT ME


distanceUnitId

java.lang.Long distanceUnitId
The internal ID of the associated distanceUnit object.


fiducialType

OntologyEntry fiducialType
DOCUMENT ME


fiducialTypeId

java.lang.Long fiducialTypeId
The internal ID of the associated fiducialType object.


position

Position position
DOCUMENT ME


positionId

java.lang.Long positionId
The internal ID of the associated position object.

Class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl extends ManufactureLIMSImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

bioMaterialPlateIdentifier

java.lang.String bioMaterialPlateIdentifier
The plate from which a biomaterial was obtained.


bioMaterialPlateRow

java.lang.String bioMaterialPlateRow
The plate row from which a biomaterial was obtained. Specified by a letter.


bioMaterialPlateCol

java.lang.String bioMaterialPlateCol
The plate column from which a biomaterial was obtained. Specified by a number.

Class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

quality

java.lang.String quality
A brief description of the quality of the array manufacture process.


feature

Feature feature
DOCUMENT ME


featureId

java.lang.Long featureId
The internal ID of the associated feature object.


identifierLIMS

DatabaseEntry identifierLIMS
DOCUMENT ME


identifierLIMSId

java.lang.Long identifierLIMSId
The internal ID of the associated identifierLIMS object.


bioMaterial

BioMaterial bioMaterial
DOCUMENT ME


bioMaterialId

java.lang.Long bioMaterialId
The internal ID of the associated bioMaterial object.

Class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

deltaX

java.lang.Float deltaX
Deviation from the y coordinate of this feature's position.


deltaY

java.lang.Float deltaY
Deviation from the y coordinate of this feature's position.


distanceUnit

DistanceUnit distanceUnit
DOCUMENT ME


distanceUnitId

java.lang.Long distanceUnitId
The internal ID of the associated distanceUnit object.

Class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

zone

Zone zone
DOCUMENT ME


zoneId

java.lang.Long zoneId
The internal ID of the associated zone object.


defectType

OntologyEntry defectType
DOCUMENT ME


defectTypeId

java.lang.Long defectTypeId
The internal ID of the associated defectType object.


positionDelta

PositionDelta positionDelta
DOCUMENT ME


positionDeltaId

java.lang.Long positionDeltaId
The internal ID of the associated positionDelta object.


Package gov.nih.nci.mageom.domain.ArrayDesign.impl

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

version

java.lang.String version
The version of this design.


numberOfFeatures

java.lang.Integer numberOfFeatures
The number of features for this array


protocolApplicationsCount

int protocolApplicationsCount
The count of ProtocolApplication objects.


protocolApplications

ProtocolApplication[] protocolApplications
DOCUMENT ME


compositeGroupsCount

int compositeGroupsCount
The count of CompositeGroup objects.


compositeGroups

CompositeGroup[] compositeGroups
DOCUMENT ME


designProvidersCount

int designProvidersCount
The count of Contact objects.


designProviders

Contact[] designProviders
DOCUMENT ME


reporterGroupsCount

int reporterGroupsCount
The count of ReporterGroup objects.


reporterGroups

ReporterGroup[] reporterGroups
DOCUMENT ME


featureGroupsCount

int featureGroupsCount
The count of FeatureGroup objects.


featureGroups

FeatureGroup[] featureGroups
DOCUMENT ME

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl extends DesignElementGroupImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

compositeSequencesCount

int compositeSequencesCount
The count of CompositeSequence objects.


compositeSequences

CompositeSequence[] compositeSequences
DOCUMENT ME

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

species

OntologyEntry species
DOCUMENT ME


speciesId

java.lang.Long speciesId
The internal ID of the associated species object.


typesCount

int typesCount
The count of OntologyEntry objects.


types

OntologyEntry[] types
DOCUMENT ME

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl extends DesignElementGroupImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

featureWidth

java.lang.Float featureWidth
The width of the feature.


featureLength

java.lang.Float featureLength
The length of the feature.


featureHeight

java.lang.Float featureHeight
The height of the feature.


featuresCount

int featuresCount
The count of Feature objects.


features

Feature[] features
DOCUMENT ME


technologyType

OntologyEntry technologyType
DOCUMENT ME


technologyTypeId

java.lang.Long technologyTypeId
The internal ID of the associated technologyType object.


featureShape

OntologyEntry featureShape
DOCUMENT ME


featureShapeId

java.lang.Long featureShapeId
The internal ID of the associated featureShape object.


distanceUnit

DistanceUnit distanceUnit
DOCUMENT ME


distanceUnitId

java.lang.Long distanceUnitId
The internal ID of the associated distanceUnit object.

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl extends ArrayDesignImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

zoneGroupsCount

int zoneGroupsCount
The count of ZoneGroup objects.


zoneGroups

ZoneGroup[] zoneGroups
DOCUMENT ME


surfaceType

OntologyEntry surfaceType
DOCUMENT ME


surfaceTypeId

java.lang.Long surfaceTypeId
The internal ID of the associated surfaceType object.

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl extends DesignElementGroupImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

reportersCount

int reportersCount
The count of Reporter objects.


reporters

Reporter[] reporters
DOCUMENT ME

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

spacingsBetweenZonesX

java.lang.Float spacingsBetweenZonesX
Spacing between zones, if applicable.


spacingsBetweenZonesY

java.lang.Float spacingsBetweenZonesY
Spacing between zones, if applicable.


zonesPerX

java.lang.Integer zonesPerX
The number of zones on the x-axis.


zonesPerY

java.lang.Integer zonesPerY
The number of zones on the y-axis.


zoneLocationsCount

int zoneLocationsCount
The count of Zone objects.


zoneLocations

Zone[] zoneLocations
DOCUMENT ME


zoneLayout

ZoneLayout zoneLayout
DOCUMENT ME


zoneLayoutId

java.lang.Long zoneLayoutId
The internal ID of the associated zoneLayout object.


distanceUnit

DistanceUnit distanceUnit
DOCUMENT ME


distanceUnitId

java.lang.Long distanceUnitId
The internal ID of the associated distanceUnit object.

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

row

java.lang.Integer row
row position in the ZoneGroup


column

java.lang.Integer column
column position in the ZoneGroup.


upperLeftX

java.lang.Float upperLeftX
Boundary vertical upper left position relative to (0,0).


upperLeftY

java.lang.Float upperLeftY
Boundary horizontal upper left position relative to (0,0).


lowerRightX

java.lang.Float lowerRightX
Boundary vertical lower right position relative to (0,0).


lowerRightY

java.lang.Float lowerRightY
Boundary horizontal lower right position relative to (0,0).


distanceUnit

DistanceUnit distanceUnit
DOCUMENT ME


distanceUnitId

java.lang.Long distanceUnitId
The internal ID of the associated distanceUnit object.

Class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

numFeaturesPerRow

java.lang.Integer numFeaturesPerRow
The number of features from left to right.


numFeaturesPerCol

java.lang.Integer numFeaturesPerCol
The number of features from top to bottom of the grid.


spacingBetweenRows

java.lang.Float spacingBetweenRows
Spacing between the rows.


spacingBetweenCols

java.lang.Float spacingBetweenCols
Spacing between the columns.


distanceUnit

DistanceUnit distanceUnit
DOCUMENT ME


distanceUnitId

java.lang.Long distanceUnitId
The internal ID of the associated distanceUnit object.


Package gov.nih.nci.mageom.domain.AuditAndSecurity.impl

Class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

date

java.util.Date date
The date of a change.


action

java.lang.String action
Indicates whether an action is a creation or a modification.


performer

Contact performer
DOCUMENT ME


performerId

java.lang.Long performerId
The internal ID of the associated performer object.

Class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

URI

java.lang.String URI
DOCUMENT ME


address

java.lang.String address
DOCUMENT ME


phone

java.lang.String phone
DOCUMENT ME


tollFreePhone

java.lang.String tollFreePhone
DOCUMENT ME


email

java.lang.String email
DOCUMENT ME


fax

java.lang.String fax
DOCUMENT ME


rolesCount

int rolesCount
The count of OntologyEntry objects.


roles

OntologyEntry[] roles
DOCUMENT ME

Class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl extends ContactImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

parent

Organization parent
DOCUMENT ME


parentId

java.lang.Long parentId
The internal ID of the associated parent object.

Class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl extends ContactImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

lastName

java.lang.String lastName
DOCUMENT ME


firstName

java.lang.String firstName
DOCUMENT ME


midInitials

java.lang.String midInitials
DOCUMENT ME


affiliation

Organization affiliation
DOCUMENT ME


affiliationId

java.lang.Long affiliationId
The internal ID of the associated affiliation object.

Class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

membersCount

int membersCount
The count of Contact objects.


members

Contact[] members
DOCUMENT ME

Class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

securityGroupsCount

int securityGroupsCount
The count of SecurityGroup objects.


securityGroups

SecurityGroup[] securityGroups
DOCUMENT ME


ownerCount

int ownerCount
The count of Contact objects.


owner

Contact[] owner
DOCUMENT ME


Package gov.nih.nci.mageom.domain.BioAssay.impl

Class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl extends BioEventImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

array

Array array
DOCUMENT ME


arrayId

java.lang.Long arrayId
The internal ID of the associated array object.


sourceBioMaterialMeasurementsCount

int sourceBioMaterialMeasurementsCount
The count of BioMaterialMeasurement objects.


sourceBioMaterialMeasurements

BioMaterialMeasurement[] sourceBioMaterialMeasurements
DOCUMENT ME


physicalBioAssayTarget

PhysicalBioAssay physicalBioAssayTarget
DOCUMENT ME


physicalBioAssayTargetId

java.lang.Long physicalBioAssayTargetId
The internal ID of the associated physicalBioAssayTarget object.

Class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

bioAssayFactorValuesCount

int bioAssayFactorValuesCount
The count of FactorValue objects.


bioAssayFactorValues

FactorValue[] bioAssayFactorValues
DOCUMENT ME


channelsCount

int channelsCount
The count of Channel objects.


channels

Channel[] channels
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl extends BioEventImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

physicalBioAssay

PhysicalBioAssay physicalBioAssay
DOCUMENT ME


physicalBioAssayId

java.lang.Long physicalBioAssayId
The internal ID of the associated physicalBioAssay object.


target

PhysicalBioAssay target
DOCUMENT ME


targetId

java.lang.Long targetId
The internal ID of the associated target object.

Class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

labelsCount

int labelsCount
The count of Compound objects.


labels

Compound[] labels
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl extends BioAssayImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

derivedBioAssayMapCount

int derivedBioAssayMapCount
The count of BioAssayMap objects.


derivedBioAssayMap

BioAssayMap[] derivedBioAssayMap
DOCUMENT ME


derivedBioAssayDataCount

int derivedBioAssayDataCount
The count of DerivedBioAssayData objects.


derivedBioAssayData

DerivedBioAssayData[] derivedBioAssayData
DOCUMENT ME


type

OntologyEntry type
DOCUMENT ME


typeId

java.lang.Long typeId
The internal ID of the associated type object.

Class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl extends BioEventImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

physicalBioAssaySource

PhysicalBioAssay physicalBioAssaySource
DOCUMENT ME


physicalBioAssaySourceId

java.lang.Long physicalBioAssaySourceId
The internal ID of the associated physicalBioAssaySource object.


measuredBioAssayTarget

MeasuredBioAssay measuredBioAssayTarget
DOCUMENT ME


measuredBioAssayTargetId

java.lang.Long measuredBioAssayTargetId
The internal ID of the associated measuredBioAssayTarget object.

Class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl extends BioAssayCreationImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl extends BioAssayTreatmentImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

imagesCount

int imagesCount
The count of Image objects.


images

Image[] images
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

URI

java.lang.String URI
The file location in which an image may be found.


channelsCount

int channelsCount
The count of Channel objects.


channels

Channel[] channels
DOCUMENT ME


format

OntologyEntry format
DOCUMENT ME


formatId

java.lang.Long formatId
The internal ID of the associated format object.

Class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl extends BioAssayImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

featureExtraction

FeatureExtraction featureExtraction
DOCUMENT ME


featureExtractionId

java.lang.Long featureExtractionId
The internal ID of the associated featureExtraction object.


measuredBioAssayDataCount

int measuredBioAssayDataCount
The count of MeasuredBioAssayData objects.


measuredBioAssayData

MeasuredBioAssayData[] measuredBioAssayData
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl extends BioAssayImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

physicalBioAssayDataCount

int physicalBioAssayDataCount
The count of Image objects.


physicalBioAssayData

Image[] physicalBioAssayData
DOCUMENT ME


bioAssayCreation

BioAssayCreation bioAssayCreation
DOCUMENT ME


bioAssayCreationId

java.lang.Long bioAssayCreationId
The internal ID of the associated bioAssayCreation object.


bioAssayTreatmentsCount

int bioAssayTreatmentsCount
The count of BioAssayTreatment objects.


bioAssayTreatments

BioAssayTreatment[] bioAssayTreatments
DOCUMENT ME


Package gov.nih.nci.mageom.domain.BioAssayData.impl

Class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

bioAssayDimension

BioAssayDimension bioAssayDimension
DOCUMENT ME


bioAssayDimensionId

java.lang.Long bioAssayDimensionId
The internal ID of the associated bioAssayDimension object.


designElementDimension

DesignElementDimension designElementDimension
DOCUMENT ME


designElementDimensionId

java.lang.Long designElementDimensionId
The internal ID of the associated designElementDimension object.


quantitationTypeDimension

QuantitationTypeDimension quantitationTypeDimension
DOCUMENT ME


quantitationTypeDimensionId

java.lang.Long quantitationTypeDimensionId
The internal ID of the associated quantitationTypeDimension object.


summaryStatisticsCount

int summaryStatisticsCount
The count of NameValueType objects.


summaryStatistics

NameValueType[] summaryStatistics
DOCUMENT ME


bioDataValues

BioDataValues bioDataValues
DOCUMENT ME


bioDataValuesId

java.lang.Long bioDataValuesId
The internal ID of the associated bioDataValues object.

Class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

value

java.lang.Object value
The datum value.


designElement

DesignElement designElement
DOCUMENT ME


designElementId

java.lang.Long designElementId
The internal ID of the associated designElement object.


quantitationType

QuantitationType quantitationType
DOCUMENT ME


quantitationTypeId

java.lang.Long quantitationTypeId
The internal ID of the associated quantitationType object.


bioAssay

BioAssay bioAssay
DOCUMENT ME


bioAssayId

java.lang.Long bioAssayId
The internal ID of the associated bioAssay object.

Class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

bioAssaysCount

int bioAssaysCount
The count of BioAssay objects.


bioAssays

BioAssay[] bioAssays
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl extends MapImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

bioAssayMapTarget

DerivedBioAssay bioAssayMapTarget
DOCUMENT ME


bioAssayMapTargetId

java.lang.Long bioAssayMapTargetId
The internal ID of the associated bioAssayMapTarget object.


sourceBioAssaysCount

int sourceBioAssaysCount
The count of BioAssay objects.


sourceBioAssays

BioAssay[] sourceBioAssays
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

bioAssayMapsCount

int bioAssayMapsCount
The count of BioAssayMap objects.


bioAssayMaps

BioAssayMap[] bioAssayMaps
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl extends BioDataValuesImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

cube

java.lang.Object[][][] cube
Three dimension array, indexed by the three dimensions to provide the data for the


order

java.lang.String order
The order to expect the dimension. The enumeration uses the first letter of the three to represent the six possible orderings.


sourceType

java.lang.String sourceType

Class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl extends BioDataValuesImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

bioAssayTupleDataCount

int bioAssayTupleDataCount
The count of BioAssayDatum objects.


bioAssayTupleData

BioAssayDatum[] bioAssayTupleData
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl extends DesignElementDimensionImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

compositeSequencesCount

int compositeSequencesCount
The count of CompositeSequence objects.


compositeSequences

CompositeSequence[] compositeSequences
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl extends BioAssayDataImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

producerTransformation

Transformation producerTransformation
DOCUMENT ME


producerTransformationId

java.lang.Long producerTransformationId
The internal ID of the associated producerTransformation object.

Class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl extends MapImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

designElementMapsCount

int designElementMapsCount
The count of DesignElementMap objects.


designElementMaps

DesignElementMap[] designElementMaps
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl extends DesignElementDimensionImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

containedFeaturesCount

int containedFeaturesCount
The count of Feature objects.


containedFeatures

Feature[] containedFeatures
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl extends BioAssayDataImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

quantitationTypesCount

int quantitationTypesCount
The count of QuantitationType objects.


quantitationTypes

QuantitationType[] quantitationTypes
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl extends MapImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

targetQuantitationType

QuantitationType targetQuantitationType
DOCUMENT ME


targetQuantitationTypeId

java.lang.Long targetQuantitationTypeId
The internal ID of the associated targetQuantitationType object.


sourcesQuantitationTypeCount

int sourcesQuantitationTypeCount
The count of QuantitationType objects.


sourcesQuantitationType

QuantitationType[] sourcesQuantitationType
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

quantitationTypeMapsCount

int quantitationTypeMapsCount
The count of QuantitationTypeMap objects.


quantitationTypeMaps

QuantitationTypeMap[] quantitationTypeMaps
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl extends DesignElementDimensionImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

reportersCount

int reportersCount
The count of Reporter objects.


reporters

Reporter[] reporters
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl extends BioEventImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

derivedBioAssayDataTarget

DerivedBioAssayData[] derivedBioAssayDataTarget
DOCUMENT ME


bioAssayDataSourcesCount

int bioAssayDataSourcesCount
The count of BioAssayData objects.


bioAssayDataSources

BioAssayData[] bioAssayDataSources
DOCUMENT ME


bioAssayMapping

BioAssayMapping bioAssayMapping
DOCUMENT ME


bioAssayMappingId

java.lang.Long bioAssayMappingId
The internal ID of the associated bioAssayMapping object.


designElementMapping

DesignElementMapping designElementMapping
DOCUMENT ME


designElementMappingId

java.lang.Long designElementMappingId
The internal ID of the associated designElementMapping object.


quantitationTypeMapping

QuantitationTypeMapping quantitationTypeMapping
rank: 3


quantitationTypeMappingId

java.lang.Long quantitationTypeMappingId
The internal ID of the associated quantitationTypeMapping object.


Package gov.nih.nci.mageom.domain.BioEvent.impl

Class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

protocolApplicationsCount

int protocolApplicationsCount
The count of ProtocolApplication objects.


protocolApplications

ProtocolApplication[] protocolApplications
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl extends BioEventImpl implements Serializable

serialVersionUID: 1234567890L


Package gov.nih.nci.mageom.domain.BioMaterial.impl

Class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

treatmentsCount

int treatmentsCount
The count of Treatment objects.


treatments

Treatment[] treatments
DOCUMENT ME


materialType

OntologyEntry materialType
DOCUMENT ME


materialTypeId

java.lang.Long materialTypeId
The internal ID of the associated materialType object.


characteristicsCount

int characteristicsCount
The count of OntologyEntry objects.


characteristics

OntologyEntry[] characteristics
DOCUMENT ME


qualityControlStatisticsCount

int qualityControlStatisticsCount
The count of NameValueType objects.


qualityControlStatistics

NameValueType[] qualityControlStatistics
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

bioMaterial

BioMaterial bioMaterial
DOCUMENT ME


bioMaterialId

java.lang.Long bioMaterialId
The internal ID of the associated bioMaterial object.


measurement

Measurement measurement
DOCUMENT ME


measurementId

java.lang.Long measurementId
The internal ID of the associated measurement object.

Class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl extends BioMaterialImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

type

OntologyEntry type
DOCUMENT ME


typeId

java.lang.Long typeId
The internal ID of the associated type object.

Class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl extends BioMaterialImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

sourceContactCount

int sourceContactCount
The count of Contact objects.


sourceContact

Contact[] sourceContact
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

isSolvent

java.lang.Boolean isSolvent
A Compound may be a special case Solvent.


componentCompoundsCount

int componentCompoundsCount
The count of CompoundMeasurement objects.


componentCompounds

CompoundMeasurement[] componentCompounds
DOCUMENT ME


compoundIndicesCount

int compoundIndicesCount
The count of OntologyEntry objects.


compoundIndices

OntologyEntry[] compoundIndices
DOCUMENT ME


externalLIMS

DatabaseEntry externalLIMS
DOCUMENT ME


externalLIMSId

java.lang.Long externalLIMSId
The internal ID of the associated externalLIMS object.

Class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

measurement

Measurement measurement
DOCUMENT ME


measurementId

java.lang.Long measurementId
The internal ID of the associated measurement object.


compound

Compound compound
DOCUMENT ME


compoundId

java.lang.Long compoundId
The internal ID of the associated compound object.

Class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl extends BioMaterialImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

labelsCount

int labelsCount
The count of Compound objects.


labels

Compound[] labels
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl extends BioEventImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

order

java.lang.Integer order
The chronological order in which a treatment occurred (in relation to other treatments). More one treatment can have the same chronological order indicating that they happened (or were to happen) simultaneously.


actionMeasurement

Measurement actionMeasurement
The measurement of an action, time exposed, speed of centrifuge, etc.


actionMeasurementId

java.lang.Long actionMeasurementId
The internal ID of the associated actionMeasurement object.


sourceBioMaterialMeasurementsCount

int sourceBioMaterialMeasurementsCount
The count of BioMaterialMeasurement objects.


sourceBioMaterialMeasurements

BioMaterialMeasurement[] sourceBioMaterialMeasurements
DOCUMENT ME


compoundMeasurementsCount

int compoundMeasurementsCount
The count of CompoundMeasurement objects.


compoundMeasurements

CompoundMeasurement[] compoundMeasurements
DOCUMENT ME


action

OntologyEntry action
DOCUMENT ME


actionId

java.lang.Long actionId
The internal ID of the associated action object.


Package gov.nih.nci.mageom.domain.BioSequence.impl

Class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

length

java.lang.Integer length
The number of residues in the biosequence.


isApproximateLength

java.lang.Boolean isApproximateLength
If length not positively known will be true


isCircular

java.lang.Boolean isCircular
Indicates if the BioSequence is circular in nature.


sequence

java.lang.String sequence
The actual components of the sequence, for instance, for DNA a string consisting of A,T,C and G. attribute is optional and instead of specified here, can be found through the DatabaseEntry.


seqFeaturesCount

int seqFeaturesCount
The count of SeqFeature objects.


seqFeatures

SeqFeature[] seqFeatures
DOCUMENT ME


ontologyEntriesCount

int ontologyEntriesCount
The count of OntologyEntry objects.


ontologyEntries

OntologyEntry[] ontologyEntries
DOCUMENT ME


polymerType

OntologyEntry polymerType
DOCUMENT ME


polymerTypeId

java.lang.Long polymerTypeId
The internal ID of the associated polymerType object.


sequenceDatabasesCount

int sequenceDatabasesCount
The count of DatabaseEntry objects.


sequenceDatabases

DatabaseEntry[] sequenceDatabases
DOCUMENT ME


type

OntologyEntry type
DOCUMENT ME


typeId

java.lang.Long typeId
The internal ID of the associated type object.


species

OntologyEntry species
DOCUMENT ME


speciesId

java.lang.Long speciesId
The internal ID of the associated species object.

Class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

basis

java.lang.String basis
How the evidence for a SeqFeature was determined.


regionsCount

int regionsCount
The count of SeqFeatureLocation objects.


regions

SeqFeatureLocation[] regions
DOCUMENT ME

Class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

strandType

java.lang.String strandType
Indicates the direction and/or type of the SeqFeature, i.e. whether it is in the 5' or 3' is double stranded, etc.


subregionsCount

int subregionsCount
The count of SeqFeatureLocation objects.


subregions

SeqFeatureLocation[] subregions
DOCUMENT ME


coordinate

SequencePosition coordinate
DOCUMENT ME


coordinateId

java.lang.Long coordinateId
The internal ID of the associated coordinate object.

Class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

start

java.lang.Integer start
The location of the base, for nucleotides, that the SeqFeature starts.


end

java.lang.Integer end
The location of the base, for nucleotides, that the SeqFeature ends.


Package gov.nih.nci.mageom.domain.BQS.impl

Class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

title

java.lang.String title
DOCUMENT ME


authors

java.lang.String authors
DOCUMENT ME


publication

java.lang.String publication
DOCUMENT ME


publisher

java.lang.String publisher
DOCUMENT ME


editor

java.lang.String editor
DOCUMENT ME


year

java.util.Date year
DOCUMENT ME


volume

java.lang.String volume
DOCUMENT ME


issue

java.lang.String issue
DOCUMENT ME


pages

java.lang.String pages
DOCUMENT ME


URI

java.lang.String URI
DOCUMENT ME


parametersCount

int parametersCount
The count of OntologyEntry objects.


parameters

OntologyEntry[] parameters
DOCUMENT ME


accessionsCount

int accessionsCount
The count of DatabaseEntry objects.


accessions

DatabaseEntry[] accessions
DOCUMENT ME


Package gov.nih.nci.mageom.domain.Description.impl

Class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

accession

java.lang.String accession
The identifier used to look up the record.


accessionVersion

java.lang.String accessionVersion
The appropriate version of the accession (if applicable).


URI

java.lang.String URI
The location of the record.


database

Database database
DOCUMENT ME


databaseId

java.lang.Long databaseId
The internal ID of the associated database object.


type

OntologyEntry type
DOCUMENT ME


typeId

java.lang.Long typeId
The internal ID of the associated type object.

Class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

version

java.lang.String version
The version for which a DatabaseReference applies.


URI

java.lang.String URI
The location of the Database.


contactsCount

int contactsCount
The count of Contact objects.


contacts

Contact[] contacts
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

text

java.lang.String text
The description.


URI

java.lang.String URI
A reference to the location and type of an outside resource.


databaseReferencesCount

int databaseReferencesCount
The count of DatabaseEntry objects.


databaseReferences

DatabaseEntry[] databaseReferences
DOCUMENT ME


bibliographicReferencesCount

int bibliographicReferencesCount
The count of BibliographicReference objects.


bibliographicReferences

BibliographicReference[] bibliographicReferences
DOCUMENT ME


externalReference

ExternalReference externalReference
DOCUMENT ME


externalReferenceId

java.lang.Long externalReferenceId
The internal ID of the associated externalReference object.


annotationsCount

int annotationsCount
The count of OntologyEntry objects.


annotations

OntologyEntry[] annotations
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

exportedFromServer

java.lang.String exportedFromServer
The originating server for the object, a network address or common name.


exportedFromDB

java.lang.String exportedFromDB
Name of the database, if applicable, that the object was exported from.


exportID

java.lang.String exportID
The identifier of the object at the originating source.


exportName

java.lang.String exportName
The name of the object at the originating source.

Class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

category

java.lang.String category
The category to which this entry belongs.


value

java.lang.String value
The value for this entry in this category.


description

java.lang.String description
The description of the meaning for this entry.


ontologyReference

DatabaseEntry ontologyReference
DOCUMENT ME


ontologyReferenceId

java.lang.Long ontologyReferenceId
The internal ID of the associated ontologyReference object.


associationsCount

int associationsCount
The count of OntologyEntry objects.


associations

OntologyEntry[] associations
DOCUMENT ME


Package gov.nih.nci.mageom.domain.DesignElement.impl

Class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl extends DesignElementMapImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

compositeSequence

CompositeSequence compositeSequence
DOCUMENT ME


compositeSequenceId

java.lang.Long compositeSequenceId
The internal ID of the associated compositeSequence object.


compositePositionSourcesCount

int compositePositionSourcesCount
The count of CompositePosition objects.


compositePositionSources

CompositePosition[] compositePositionSources
DOCUMENT ME

Class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl extends SequencePositionImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

mismatchInformationCount

int mismatchInformationCount
The count of MismatchInformation objects.


mismatchInformation

MismatchInformation[] mismatchInformation
DOCUMENT ME


composite

CompositeSequence composite
DOCUMENT ME


compositeId

java.lang.Long compositeId
The internal ID of the associated composite object.

Class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl extends DesignElementImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

biologicalCharacteristicsCount

int biologicalCharacteristicsCount
The count of BioSequence objects.


biologicalCharacteristics

BioSequence[] biologicalCharacteristics
DOCUMENT ME


reporterCompositeMapsCount

int reporterCompositeMapsCount
The count of ReporterCompositeMap objects.


reporterCompositeMaps

ReporterCompositeMap[] reporterCompositeMaps
DOCUMENT ME


compositeCompositeMapsCount

int compositeCompositeMapsCount
The count of CompositeCompositeMap objects.


compositeCompositeMaps

CompositeCompositeMap[] compositeCompositeMaps
DOCUMENT ME

Class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

controlType

OntologyEntry controlType
DOCUMENT ME


controlTypeId

java.lang.Long controlTypeId
The internal ID of the associated controlType object.

Class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl extends DesignElementImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

featureGroup

FeatureGroup featureGroup
DOCUMENT ME


featureGroupId

java.lang.Long featureGroupId
The internal ID of the associated featureGroup object.


controlledFeaturesCount

int controlledFeaturesCount
The count of Feature objects.


controlledFeatures

Feature[] controlledFeatures
DOCUMENT ME


controlFeaturesCount

int controlFeaturesCount
The count of Feature objects.


controlFeatures

Feature[] controlFeatures
DOCUMENT ME


zone

Zone zone
DOCUMENT ME


zoneId

java.lang.Long zoneId
The internal ID of the associated zone object.


featureLocation

FeatureLocation featureLocation
DOCUMENT ME


featureLocationId

java.lang.Long featureLocationId
The internal ID of the associated featureLocation object.


position

Position position
DOCUMENT ME


positionId

java.lang.Long positionId
The internal ID of the associated position object.

Class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

mismatchInformationCount

int mismatchInformationCount
The count of MismatchInformation objects.


mismatchInformation

MismatchInformation[] mismatchInformation
DOCUMENT ME


feature

Feature feature
DOCUMENT ME


featureId

java.lang.Long featureId
The internal ID of the associated feature object.

Class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

row

java.lang.Integer row
row position in the Zone


column

java.lang.Integer column
column position in the Zone.

Class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl extends DesignElementMapImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

featureInformationSourcesCount

int featureInformationSourcesCount
The count of FeatureInformation objects.


featureInformationSources

FeatureInformation[] featureInformationSources
DOCUMENT ME


reporter

Reporter reporter
DOCUMENT ME


reporterId

java.lang.Long reporterId
The internal ID of the associated reporter object.

Class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

startCoord

java.lang.Integer startCoord
Offset into the sequence that the mismatch occurs.


newSequence

java.lang.String newSequence
The sequence that replaces the specified sequence starting at start_coord.


replacedLength

java.lang.Integer replacedLength
Length of the original sequence that is replaced. A deletion is specified when the length of the is less than the replacedLength.

Class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

x

java.lang.Float x
The horizontal distance from the upper left corner of the array.


y

java.lang.Float y
The vertical distance from the upper left corner of the array.


distanceUnit

DistanceUnit distanceUnit
DOCUMENT ME


distanceUnitId

java.lang.Long distanceUnitId
The internal ID of the associated distanceUnit object.

Class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl extends DesignElementMapImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

reporterPositionSourcesCount

int reporterPositionSourcesCount
The count of ReporterPosition objects.


reporterPositionSources

ReporterPosition[] reporterPositionSources
DOCUMENT ME


compositeSequence

CompositeSequence compositeSequence
DOCUMENT ME


compositeSequenceId

java.lang.Long compositeSequenceId
The internal ID of the associated compositeSequence object.

Class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl extends DesignElementImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

failTypesCount

int failTypesCount
The count of OntologyEntry objects.


failTypes

OntologyEntry[] failTypes
DOCUMENT ME


warningType

OntologyEntry warningType
DOCUMENT ME


warningTypeId

java.lang.Long warningTypeId
The internal ID of the associated warningType object.


immobilizedCharacteristicsCount

int immobilizedCharacteristicsCount
The count of BioSequence objects.


immobilizedCharacteristics

BioSequence[] immobilizedCharacteristics
DOCUMENT ME


featureReporterMapsCount

int featureReporterMapsCount
The count of FeatureReporterMap objects.


featureReporterMaps

FeatureReporterMap[] featureReporterMaps
DOCUMENT ME

Class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl extends SequencePositionImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

mismatchInformationCount

int mismatchInformationCount
The count of MismatchInformation objects.


mismatchInformation

MismatchInformation[] mismatchInformation
DOCUMENT ME


reporter

Reporter reporter
DOCUMENT ME


reporterId

java.lang.Long reporterId
The internal ID of the associated reporter object.


Package gov.nih.nci.mageom.domain.Experiment.impl

Class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

factorValuesCount

int factorValuesCount
The count of FactorValue objects.


factorValues

FactorValue[] factorValues
DOCUMENT ME


category

OntologyEntry category
DOCUMENT ME


categoryId

java.lang.Long categoryId
The internal ID of the associated category object.


annotationsCount

int annotationsCount
The count of OntologyEntry objects.


annotations

OntologyEntry[] annotations
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

experimentalFactorsCount

int experimentalFactorsCount
The count of ExperimentalFactor objects.


experimentalFactors

ExperimentalFactor[] experimentalFactors
DOCUMENT ME


topLevelBioAssaysCount

int topLevelBioAssaysCount
The count of BioAssay objects.


topLevelBioAssays

BioAssay[] topLevelBioAssays
DOCUMENT ME


replicateDescription

Description replicateDescription
DOCUMENT ME


replicateDescriptionId

java.lang.Long replicateDescriptionId
The internal ID of the associated replicateDescription object.


qualityControlDescription

Description qualityControlDescription
DOCUMENT ME


qualityControlDescriptionId

java.lang.Long qualityControlDescriptionId
The internal ID of the associated qualityControlDescription object.


normalizationDescription

Description normalizationDescription
DOCUMENT ME


normalizationDescriptionId

java.lang.Long normalizationDescriptionId
The internal ID of the associated normalizationDescription object.


typesCount

int typesCount
The count of OntologyEntry objects.


types

OntologyEntry[] types
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

experimentDesignsCount

int experimentDesignsCount
The count of ExperimentDesign objects.


experimentDesigns

ExperimentDesign[] experimentDesigns
DOCUMENT ME


providersCount

int providersCount
The count of Contact objects.


providers

Contact[] providers
DOCUMENT ME


analysisResultsCount

int analysisResultsCount
The count of BioAssayDataCluster objects.


analysisResults

BioAssayDataCluster[] analysisResults
DOCUMENT ME


bioAssayDataCount

int bioAssayDataCount
The count of BioAssayData objects.


bioAssayData

BioAssayData[] bioAssayData
DOCUMENT ME


bioAssaysCount

int bioAssaysCount
The count of BioAssay objects.


bioAssays

BioAssay[] bioAssays
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

experimentalFactor

ExperimentalFactor experimentalFactor
DOCUMENT ME


experimentalFactorId

java.lang.Long experimentalFactorId
The internal ID of the associated experimentalFactor object.


measurement

Measurement measurement
DOCUMENT ME


measurementId

java.lang.Long measurementId
The internal ID of the associated measurement object.


value

OntologyEntry value
DOCUMENT ME


valueId

java.lang.Long valueId
The internal ID of the associated value object.


Package gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl

Class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

nodesCount

int nodesCount
The count of Node objects.


nodes

Node[] nodes
DOCUMENT ME


clusterBioAssayData

BioAssayData clusterBioAssayData
DOCUMENT ME


clusterBioAssayDataId

java.lang.Long clusterBioAssayDataId
The internal ID of the associated clusterBioAssayData object.

Class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

designElementDimension

DesignElementDimension designElementDimension
DOCUMENT ME


designElementDimensionId

java.lang.Long designElementDimensionId
The internal ID of the associated designElementDimension object.


quantitationDimension

QuantitationTypeDimension quantitationDimension
DOCUMENT ME


quantitationDimensionId

java.lang.Long quantitationDimensionId
The internal ID of the associated quantitationDimension object.


bioAssayDimension

BioAssayDimension bioAssayDimension
DOCUMENT ME


bioAssayDimensionId

java.lang.Long bioAssayDimensionId
The internal ID of the associated bioAssayDimension object.

Class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

nodesCount

int nodesCount
The count of Node objects.


nodes

Node[] nodes
DOCUMENT ME


nodeContentsCount

int nodeContentsCount
The count of NodeContents objects.


nodeContents

NodeContents[] nodeContents
DOCUMENT ME


nodeValueCount

int nodeValueCount
The count of NodeValue objects.


nodeValue

NodeValue[] nodeValue
DOCUMENT ME

Class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

name

java.lang.String name
The name for this value.


value

java.lang.String value
The value for this NodeValue.


scale

OntologyEntry scale
DOCUMENT ME


scaleId

java.lang.Long scaleId
The internal ID of the associated scale object.


dataType

OntologyEntry dataType
DOCUMENT ME


dataTypeId

java.lang.Long dataTypeId
The internal ID of the associated dataType object.


type

OntologyEntry type
DOCUMENT ME


typeId

java.lang.Long typeId
The internal ID of the associated type object.


Package gov.nih.nci.mageom.domain.impl

Class gov.nih.nci.mageom.domain.impl.DescribableImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

descriptionsCount

int descriptionsCount
The count of Description objects.


descriptions

Description[] descriptions
DOCUMENT ME


auditTrailCount

int auditTrailCount
The count of Audit objects.


auditTrail

Audit[] auditTrail
DOCUMENT ME


security

Security security
DOCUMENT ME


securityId

java.lang.Long securityId
The internal ID of the associated security object.

Class gov.nih.nci.mageom.domain.impl.ExtendableImpl extends MAGEOMObject implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

securedElementId

java.lang.String securedElementId

propertySetsCount

int propertySetsCount
The count of NameValueType objects.


propertySets

NameValueType[] propertySets
DOCUMENT ME

Class gov.nih.nci.mageom.domain.impl.IdentifiableImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

identifier

java.lang.String identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of documents, or a repository) of its use.


name

java.lang.String name
The potentially ambiguous common identifier.

Class gov.nih.nci.mageom.domain.impl.MAGEOMObject extends java.lang.Object implements Serializable

Serialized Fields

id

java.lang.Long id

Class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl extends MAGEOMObject implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

name

java.lang.String name
The name of the key.


value

java.lang.String value
The value of the name.


type

java.lang.String type
The type of the key.


propertySetsCount

int propertySetsCount
The count of NameValueType objects.


propertySets

NameValueType[] propertySets
DOCUMENT ME


Package gov.nih.nci.mageom.domain.Measurement.impl

Class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl extends UnitImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

unitNameCV

java.lang.String unitNameCV
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl extends UnitImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

unitNameCV

java.lang.String unitNameCV
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl extends UnitImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

unitNameCV

java.lang.String unitNameCV
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

type

java.lang.String type
The type of measurement, for instance if the measurement is five feet, it can be either absolute feet tall) or change (five feet further along).


value

java.lang.String value
The value of the measurement. kindCV (and otherKind) determine with Unit the datatype of


kindCV

java.lang.String kindCV
One of the enumeration values to determine the controlled vocabulary of the value.


otherKind

java.lang.String otherKind
Name of the controlled vocabulary if it isn't one of the Unit subclasses.


unit

Unit unit
DOCUMENT ME


unitId

java.lang.Long unitId
The internal ID of the associated unit object.

Class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl extends UnitImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

unitNameCV

java.lang.String unitNameCV
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl extends UnitImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

unitNameCV

java.lang.String unitNameCV
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl extends UnitImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

unitNameCV

java.lang.String unitNameCV
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

unitName

java.lang.String unitName
The name of the unit.

Class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl extends UnitImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

unitNameCV

java.lang.String unitNameCV
DOCUMENT ME


Package gov.nih.nci.mageom.domain.Protocol.impl

Class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl extends ParameterizableApplicationImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

serialNumber

java.lang.String serialNumber
Manufacturer's identifier for the Hardware.


hardware

Hardware hardware
DOCUMENT ME


hardwareId

java.lang.Long hardwareId
The internal ID of the associated hardware object.

Class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl extends ParameterizableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

model

java.lang.String model
The model (number) of a piece of hardware.


make

java.lang.String make
The make of the Hardware (its manufacturer).


hardwareManufacturersCount

int hardwareManufacturersCount
The count of Contact objects.


hardwareManufacturers

Contact[] hardwareManufacturers
DOCUMENT ME


softwaresCount

int softwaresCount
The count of Software objects.


softwares

Software[] softwares
DOCUMENT ME


type

OntologyEntry type
DOCUMENT ME


typeId

java.lang.Long typeId
The internal ID of the associated type object.

Class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

dataType

OntologyEntry dataType
DOCUMENT ME


dataTypeId

java.lang.Long dataTypeId
The internal ID of the associated dataType object.


defaultValue

Measurement defaultValue
DOCUMENT ME


defaultValueId

java.lang.Long defaultValueId
The internal ID of the associated defaultValue object.

Class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl extends DescribableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

parameterValuesCount

int parameterValuesCount
The count of ParameterValue objects.


parameterValues

ParameterValue[] parameterValues
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

URI

java.lang.String URI
Where an instantiated Parameterizable is located.


parameterTypesCount

int parameterTypesCount
The count of Parameter objects.


parameterTypes

Parameter[] parameterTypes
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl extends ExtendableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

value

java.lang.String value
The value of the parameter. Will have the datatype of its associated Parameter.


parameterType

Parameter parameterType
DOCUMENT ME


parameterTypeId

java.lang.Long parameterTypeId
The internal ID of the associated parameterType object.

Class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl extends ParameterizableApplicationImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

activityDate

java.lang.String activityDate
When the protocol was applied.


softwareApplicationsCount

int softwareApplicationsCount
The count of SoftwareApplication objects.


softwareApplications

SoftwareApplication[] softwareApplications
DOCUMENT ME


hardwareApplicationsCount

int hardwareApplicationsCount
The count of HardwareApplication objects.


hardwareApplications

HardwareApplication[] hardwareApplications
DOCUMENT ME


protocol

Protocol protocol
DOCUMENT ME


protocolId

java.lang.Long protocolId
The internal ID of the associated protocol object.


performersCount

int performersCount
The count of Person objects.


performers

Person[] performers
DOCUMENT ME

Class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl extends ParameterizableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

text

java.lang.String text
The text description of the Protocol.


title

java.lang.String title
The title of the Protocol


softwaresCount

int softwaresCount
The count of Software objects.


softwares

Software[] softwares
DOCUMENT ME


hardwaresCount

int hardwaresCount
The count of Hardware objects.


hardwares

Hardware[] hardwares
DOCUMENT ME


type

OntologyEntry type
DOCUMENT ME


typeId

java.lang.Long typeId
The internal ID of the associated type object.

Class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl extends ParameterizableApplicationImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

version

java.lang.String version
The version of the software.


releaseDate

java.util.Date releaseDate
When the software was released.


software

Software software
DOCUMENT ME


softwareId

java.lang.Long softwareId
The internal ID of the associated software object.

Class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl extends ParameterizableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

softwareManufacturersCount

int softwareManufacturersCount
The count of Contact objects.


softwareManufacturers

Contact[] softwareManufacturers
DOCUMENT ME


hardware

Hardware hardware
DOCUMENT ME


hardwareId

java.lang.Long hardwareId
The internal ID of the associated hardware object.


softwaresCount

int softwaresCount
The count of Software objects.


softwares

Software[] softwares
DOCUMENT ME


type

OntologyEntry type
DOCUMENT ME


typeId

java.lang.Long typeId
The internal ID of the associated type object.


Package gov.nih.nci.mageom.domain.QuantitationType.impl

Class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl extends StandardQuantitationTypeImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

targetQuantitationType

QuantitationType targetQuantitationType
DOCUMENT ME


targetQuantitationTypeId

java.lang.Long targetQuantitationTypeId
The internal ID of the associated targetQuantitationType object.

Class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl extends StandardQuantitationTypeImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl extends ConfidenceIndicatorImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl extends ConfidenceIndicatorImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl extends StandardQuantitationTypeImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl extends StandardQuantitationTypeImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl extends StandardQuantitationTypeImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl extends ConfidenceIndicatorImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl extends IdentifiableImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

isBackground

java.lang.Boolean isBackground
Indicates whether the quantitation has been measured from the background or from the feature


channel

Channel channel
DOCUMENT ME


channelId

java.lang.Long channelId
The internal ID of the associated channel object.


quantitationTypeMapsCount

int quantitationTypeMapsCount
The count of QuantitationTypeMap objects.


quantitationTypeMaps

QuantitationTypeMap[] quantitationTypeMaps
DOCUMENT ME


confidenceIndicatorsCount

int confidenceIndicatorsCount
The count of ConfidenceIndicator objects.


confidenceIndicators

ConfidenceIndicator[] confidenceIndicators
DOCUMENT ME


dataType

OntologyEntry dataType
DOCUMENT ME


dataTypeId

java.lang.Long dataTypeId
The internal ID of the associated dataType object.


scale

OntologyEntry scale
DOCUMENT ME


scaleId

java.lang.Long scaleId
The internal ID of the associated scale object.

Class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl extends StandardQuantitationTypeImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl extends QuantitationTypeImpl implements Serializable

serialVersionUID: 1234567890L

Class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl extends QuantitationTypeImpl implements Serializable

serialVersionUID: 1234567890L


Package gov.nih.nci.mageom.persistence.ojb.mn

Class gov.nih.nci.mageom.persistence.ojb.mn.ArrayDesignProvider extends java.lang.Object implements Serializable

Serialized Fields

ARRAY_DESIGN_ID

java.lang.Long ARRAY_DESIGN_ID

CONTACT_ID

java.lang.Long CONTACT_ID

Class gov.nih.nci.mageom.persistence.ojb.mn.ArrayManufacturer extends java.lang.Object implements Serializable

Serialized Fields

ARRAY_MANUFACTURE_ID

java.lang.Long ARRAY_MANUFACTURE_ID

CONTACT_ID

java.lang.Long CONTACT_ID

Class gov.nih.nci.mageom.persistence.ojb.mn.BioSourceContact extends java.lang.Object implements Serializable

Serialized Fields

BIOSOURCE_ID

java.lang.Long BIOSOURCE_ID

CONTACT_ID

java.lang.Long CONTACT_ID

Class gov.nih.nci.mageom.persistence.ojb.mn.DatabaseContact extends java.lang.Object implements Serializable

Serialized Fields

DATABASE_ID

java.lang.Long DATABASE_ID

CONTACT_ID

java.lang.Long CONTACT_ID

Class gov.nih.nci.mageom.persistence.ojb.mn.ExperimentProvider extends java.lang.Object implements Serializable

Serialized Fields

EXPERIMENT_ID

java.lang.Long EXPERIMENT_ID

CONTACT_ID

java.lang.Long CONTACT_ID

Class gov.nih.nci.mageom.persistence.ojb.mn.HardwareManufacturers extends java.lang.Object implements Serializable

Serialized Fields

HARDWARE_ID

java.lang.Long HARDWARE_ID

CONTACT_ID

java.lang.Long CONTACT_ID

Class gov.nih.nci.mageom.persistence.ojb.mn.SecurityGroupContact extends java.lang.Object implements Serializable

Serialized Fields

SECURITY_GROUP_ID

java.lang.Long SECURITY_GROUP_ID

CONTACT_ID

java.lang.Long CONTACT_ID

Class gov.nih.nci.mageom.persistence.ojb.mn.SoftwareManufacturers extends java.lang.Object implements Serializable

Serialized Fields

HARDWARE_ID

java.lang.Long HARDWARE_ID

CONTACT_ID

java.lang.Long CONTACT_ID

Package gov.nih.nci.mageom.search

Class gov.nih.nci.mageom.search.MAGESCUtils extends gov.nih.nci.common.search.SCUtils implements Serializable

serialVersionUID: 1234567890L


Package gov.nih.nci.mageom.search.Array.impl

Class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureDeviationSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.FiducialSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl extends ManufactureLIMSSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.ArrayDesign.enhanced

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignIdCriterion extends ArrayDesignReporterSummaryCriterion implements Serializable

serialVersionUID: 164875570675491377L

Serialized Fields

ids

java.lang.Long[] ids

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignNameCriterion extends ArrayDesignReporterSummaryCriterion implements Serializable

serialVersionUID: 1158008665068196296L

Serialized Fields

names

java.lang.String[] names

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummaryCriterion extends java.lang.Object implements Serializable

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ChromosomeValueCriterion extends ArrayDesignReporterSummaryCriterion implements Serializable

serialVersionUID: 2050546760856584117L

Serialized Fields

chromosomeValues

java.lang.String[] chromosomeValues

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.Gb4ValueCriterion extends ArrayDesignReporterSummaryCriterion implements Serializable

serialVersionUID: -3770267049742332932L

Serialized Fields

gb4Values

java.lang.String[] gb4Values

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.KbPositionValueCriterion extends ArrayDesignReporterSummaryCriterion implements Serializable

serialVersionUID: 9189038758379378245L

Serialized Fields

kbPositionValues

java.lang.String[] kbPositionValues

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterNameCriterion extends ArrayDesignReporterSummaryCriterion implements Serializable

serialVersionUID: -3410702412322047672L

Serialized Fields

reporterNames

java.lang.String[] reporterNames

Package gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean extends SecurityBean implements Serializable

serialVersionUID: 2427454609779805961L

Serialized Fields

arrayDesignId

java.lang.Long arrayDesignId

arrayDesignName

java.lang.String arrayDesignName

reportersSummary

java.util.List<E> reportersSummary

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl extends EnhancedMAGEOMSearchCriteria implements Serializable

serialVersionUID: 7824811873318638509L

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean extends java.lang.Object implements Serializable

serialVersionUID: 5965854705530208882L

Serialized Fields

designElementGroupId

java.lang.Long designElementGroupId

designElementConcreteClass

java.lang.String designElementConcreteClass

reporterName

java.lang.String reporterName

chromosomeValue

java.lang.String chromosomeValue

gb4Value

java.lang.String gb4Value

kbPositionValue

java.lang.String kbPositionValue

chromosomeName

java.lang.String chromosomeName

gb4Name

java.lang.String gb4Name

kbPositionName

java.lang.String kbPositionName

Class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.SecurityBean extends java.lang.Object implements Serializable

Serialized Fields

securedElementId

java.lang.String securedElementId

Package gov.nih.nci.mageom.search.ArrayDesign.impl

Class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl extends DesignElementGroupSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.ArrayDesign.impl.DesignElementGroupSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl extends DesignElementGroupSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl extends ArrayDesignSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl extends DesignElementGroupSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.AuditAndSecurity.impl

Class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl extends ContactSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl extends ContactSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.BioAssay.enhanced

Class gov.nih.nci.mageom.search.BioAssay.enhanced.BioAssaySearchCriterion extends java.lang.Object implements Serializable

Class gov.nih.nci.mageom.search.BioAssay.enhanced.DefaultDerivedBioAssayCriterion extends DerivedBioAssaySearchCriterion implements Serializable

serialVersionUID: -4176904365887436876L

Class gov.nih.nci.mageom.search.BioAssay.enhanced.DefaultMeasuredBioAssayCriterion extends MeasuredBioAssaySearchCriterion implements Serializable

serialVersionUID: -6574990980830076140L

Class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioAssaySearchCriterion extends BioAssaySearchCriterion implements Serializable

Class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioSourceIdentifierCriterion extends DerivedBioAssaySearchCriterion implements Serializable

serialVersionUID: 3592288730357231586L

Serialized Fields

identifiers

java.lang.String[] identifiers

Class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioSourceNameCriterion extends DerivedBioAssaySearchCriterion implements Serializable

serialVersionUID: -1019771380239581967L

Serialized Fields

names

java.lang.String[] names

Class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedExperimentIdCriterion extends DerivedBioAssaySearchCriterion implements Serializable

serialVersionUID: 3226235334356300107L

Serialized Fields

ids

java.lang.Long[] ids

Class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedExperimentNameCriterion extends DerivedBioAssaySearchCriterion implements Serializable

serialVersionUID: -5993809118291678667L

Serialized Fields

names

java.lang.String[] names

Class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioAssaySearchCriterion extends BioAssaySearchCriterion implements Serializable

Class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioSourceIdentifierCriterion extends MeasuredBioAssaySearchCriterion implements Serializable

serialVersionUID: -8304298623845348499L

Serialized Fields

identifiers

java.lang.String[] identifiers

Class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioSourceNameCriterion extends MeasuredBioAssaySearchCriterion implements Serializable

serialVersionUID: 3418343201149533928L

Serialized Fields

names

java.lang.String[] names

Class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredExperimentIdCriterion extends MeasuredBioAssaySearchCriterion implements Serializable

serialVersionUID: -5749833938541485111L

Serialized Fields

ids

java.lang.Long[] ids

Class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredExperimentNameCriterion extends MeasuredBioAssaySearchCriterion implements Serializable

serialVersionUID: -5749833938541485111L

Serialized Fields

names

java.lang.String[] names

Package gov.nih.nci.mageom.search.BioAssay.enhanced.impl

Class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.DerivedBioAssaySearchCriteriaImpl extends EnhancedMAGEOMSearchCriteria implements Serializable

serialVersionUID: -238775966673733356L

Class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.MeasuredBioAssaySearchCriteriaImpl extends EnhancedMAGEOMSearchCriteria implements Serializable

serialVersionUID: -4725803155761375547L


Package gov.nih.nci.mageom.search.BioAssay.impl

Class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayCreationSearchCriteriaImpl extends BioEventSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl extends BioEventSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl extends BioAssaySearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl extends BioEventSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.HybridizationSearchCriteriaImpl extends BioAssayCreationSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.ImageAcquisitionSearchCriteriaImpl extends BioAssayTreatmentSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl extends BioAssaySearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssay.impl.PhysicalBioAssaySearchCriteriaImpl extends BioAssaySearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.BioAssayData.impl

Class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDataSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl extends MAGEOMSearchCriteria implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl extends MapSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataCubeSearchCriteriaImpl extends BioDataValuesSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataTuplesSearchCriteriaImpl extends BioDataValuesSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataValuesSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl extends DesignElementDimensionSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.DerivedBioAssayDataSearchCriteriaImpl extends BioAssayDataSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

prefetchDesignElements

boolean prefetchDesignElements

Class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMapSearchCriteriaImpl extends MapSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl extends DesignElementDimensionSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.MeasuredBioAssayDataSearchCriteriaImpl extends BioAssayDataSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

prefetchQuantitationTypes

boolean prefetchQuantitationTypes

Class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl extends MapSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl extends DesignElementDimensionSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl extends BioEventSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.BioEvent.impl

Class gov.nih.nci.mageom.search.BioEvent.impl.BioEventSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioEvent.impl.MapSearchCriteriaImpl extends BioEventSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.BioMaterial.impl

Class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioMaterial.impl.BioSampleSearchCriteriaImpl extends BioMaterialSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl extends BioMaterialSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl extends BioMaterialSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl extends BioEventSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.BioSequence.impl

Class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.BQS.impl

Class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.Description.impl

Class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.DesignElement.impl

Class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl extends DesignElementMapSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl extends SequencePositionSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl extends DesignElementSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.DesignElementSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.FeatureInformationSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl extends DesignElementMapSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl extends DesignElementSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl extends DesignElementMapSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl extends SequencePositionSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl extends DesignElementSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.enhanced

Package gov.nih.nci.mageom.search.enhanced.impl

Class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria extends MAGEOMSearchCriteria implements Serializable

serialVersionUID: -4510753783324183455L

Serialized Fields

enhancedSearchCriteria

java.util.Collection<E> enhancedSearchCriteria

Package gov.nih.nci.mageom.search.Experiment.enhanced

Class gov.nih.nci.mageom.search.Experiment.enhanced.DefaultExperimentFileCriterion extends ExperimentFileSearchCriterion implements Serializable

serialVersionUID: 5443481881180732737L

Class gov.nih.nci.mageom.search.Experiment.enhanced.DefaultExperimentSearchCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: 5641175354958969020L

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentChipPlatformTypeCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: -7693838445558053450L

Serialized Fields

typeValue

java.lang.String[] typeValue

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentDesignElementIdentifierCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: -1227797048644446867L

Serialized Fields

identifiers

java.lang.String[] identifiers

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentDesignElementNameCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: -4771034373734165191L

Serialized Fields

names

java.lang.String[] names

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentExperimentNameCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: 7333351308620414988L

Serialized Fields

experimentName

java.lang.String experimentName

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileBioSourceIdentifierCriterion extends ExperimentFileSearchCriterion implements Serializable

serialVersionUID: 3592288730357231586L

Serialized Fields

identifiers

java.lang.String[] identifiers

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileBioSourceNameCriterion extends ExperimentFileSearchCriterion implements Serializable

serialVersionUID: -1019771380239581967L

Serialized Fields

names

java.lang.String[] names

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileExperimentIdCriterion extends ExperimentFileSearchCriterion implements Serializable

serialVersionUID: 3226235334356300107L

Serialized Fields

ids

java.lang.Long[] ids

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileExperimentNameCriterion extends ExperimentFileSearchCriterion implements Serializable

serialVersionUID: -5993809118291678667L

Serialized Fields

names

java.lang.String[] names

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSearchCriterion extends java.lang.Object implements Serializable

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentInvestigatorNameSearchCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: 4603123030229134857L

Serialized Fields

criterion

NameCriterion[] criterion

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentOrganismNameSearchCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: 7520431956459375793L

Serialized Fields

name

java.lang.String name

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentPubMedIdSearchCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: 5321756236454088039L

Serialized Fields

id

java.lang.String id

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriterion extends java.lang.Object implements Serializable

Class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentTissueTypeCriterion extends ExperimentSearchCriterion implements Serializable

serialVersionUID: 6253093165158569552L

Serialized Fields

tissueType

java.lang.String tissueType

Class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion extends java.lang.Object implements Serializable

serialVersionUID: 2950187434970172530L

Serialized Fields

firstName

java.lang.String firstName

lastName

java.lang.String lastName

midInitials

java.lang.String midInitials

Package gov.nih.nci.mageom.search.Experiment.enhanced.impl

Class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentFileSearchCriteriaImpl extends EnhancedMAGEOMSearchCriteria implements Serializable

serialVersionUID: 5268418710972096872L

Class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl extends EnhancedMAGEOMSearchCriteria implements Serializable

serialVersionUID: -6705315725363828262L


Package gov.nih.nci.mageom.search.Experiment.impl

Class gov.nih.nci.mageom.search.Experiment.impl.ExperimentalFactorSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.HigherLevelAnalysis.impl

Class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeContentsSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.impl

Class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.impl.ExtendableSearchCriteriaImpl extends MAGEOMSearchCriteria implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria extends gov.nih.nci.common.search.SearchCriteria implements Serializable

Class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl extends MAGEOMSearchCriteria implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.Measurement.impl

Class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl extends UnitSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl extends UnitSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl extends UnitSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl extends UnitSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl extends UnitSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl extends UnitSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl extends UnitSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.Protocol.impl

Class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl extends ParameterizableApplicationSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl extends ParameterizableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableApplicationSearchCriteriaImpl extends DescribableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.ParameterSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl extends ExtendableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl extends ParameterizableApplicationSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl extends ParameterizableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl extends ParameterizableApplicationSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl extends ParameterizableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.search.QuantitationType.impl

Class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl extends StandardQuantitationTypeSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.DerivedSignalSearchCriteriaImpl extends StandardQuantitationTypeSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.ErrorSearchCriteriaImpl extends ConfidenceIndicatorSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.ExpectedValueSearchCriteriaImpl extends ConfidenceIndicatorSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.FailedSearchCriteriaImpl extends StandardQuantitationTypeSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.MeasuredSignalSearchCriteriaImpl extends StandardQuantitationTypeSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.PresentAbsentSearchCriteriaImpl extends StandardQuantitationTypeSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.PValueSearchCriteriaImpl extends ConfidenceIndicatorSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl extends IdentifiableSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.RatioSearchCriteriaImpl extends StandardQuantitationTypeSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.SpecializedQuantitationTypeSearchCriteriaImpl extends QuantitationTypeSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Class gov.nih.nci.mageom.search.QuantitationType.impl.StandardQuantitationTypeSearchCriteriaImpl extends QuantitationTypeSearchCriteriaImpl implements Serializable

serialVersionUID: 1234567890L

Serialized Fields

_scUtils

MAGESCUtils _scUtils

Package gov.nih.nci.mageom.util

Class gov.nih.nci.mageom.util.BioDataCubeRowReader extends MAGERowReader implements Serializable

serialVersionUID: -7163412673086517248L

Class gov.nih.nci.mageom.util.MAGERowReader extends org.apache.ojb.broker.accesslayer.RowReaderDefaultImpl implements Serializable