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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
public class TransformationImpl
The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays. It uses mappings to indicate the input and output dimensions.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected BioAssayData[] |
bioAssayDataSources
DOCUMENT ME |
protected int |
bioAssayDataSourcesCount
The count of BioAssayData objects. |
protected BioAssayMapping |
bioAssayMapping
DOCUMENT ME |
protected java.lang.Long |
bioAssayMappingId
The internal ID of the associated bioAssayMapping object. |
protected DerivedBioAssayData[] |
derivedBioAssayDataTarget
DOCUMENT ME |
protected DesignElementMapping |
designElementMapping
DOCUMENT ME |
protected java.lang.Long |
designElementMappingId
The internal ID of the associated designElementMapping object. |
protected QuantitationTypeMapping |
quantitationTypeMapping
rank: 3 |
protected java.lang.Long |
quantitationTypeMappingId
The internal ID of the associated quantitationTypeMapping object. |
| Fields inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl |
|---|
protocolApplications, protocolApplicationsCount |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
TransformationImpl()
Default constructor |
|
| Method Summary | |
|---|---|
BioAssayData[] |
getBioAssayDataSources()
Returns the value of this Transformation object's bioAssayDataSources attribute. |
int |
getBioAssayDataSourcesCount()
Returns the count of all BioAssayData
associated with this Transformation object. |
BioAssayMapping |
getBioAssayMapping()
Returns the value of this Transformation object's bioAssayMapping attribute. |
DerivedBioAssayData |
getDerivedBioAssayDataTarget()
Returns the value of this Transformation object's derivedBioAssayDataTarget attribute. |
DesignElementMapping |
getDesignElementMapping()
Returns the value of this Transformation object's designElementMapping attribute. |
QuantitationTypeMapping |
getQuantitationTypeMapping()
Returns the value of this Transformation object's quantitationTypeMapping attribute. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
Transformation[] |
searchTransformations(TransformationSearchCriteria criteria)
Returns an array of Transformation objects that
satisfy the given TransformationSearchCriteria. |
void |
setBioAssayDataSources(BioAssayData[] p_bioAssayDataSources)
Sets the bioAssayDataSources attribute. |
void |
setBioAssayMapping(BioAssayMapping p_bioAssayMapping)
Sets the bioAssayMapping attribute. |
void |
setDerivedBioAssayDataTarget(DerivedBioAssayData p_derivedBioAssayDataTarget)
Sets the derivedBioAssayDataTarget attribute. |
void |
setDesignElementMapping(DesignElementMapping p_designElementMapping)
Sets the designElementMapping attribute. |
void |
setQuantitationTypeMapping(QuantitationTypeMapping p_quantitationTypeMapping)
Sets the quantitationTypeMapping attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl |
|---|
getProtocolApplications, getProtocolApplicationsCount, searchBioEvents, setProtocolApplications |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.BioEvent.BioEvent |
|---|
getProtocolApplications, setProtocolApplications |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected DerivedBioAssayData[] derivedBioAssayDataTarget
protected int bioAssayDataSourcesCount
protected BioAssayData[] bioAssayDataSources
protected BioAssayMapping bioAssayMapping
protected java.lang.Long bioAssayMappingId
protected DesignElementMapping designElementMapping
protected java.lang.Long designElementMappingId
protected QuantitationTypeMapping quantitationTypeMapping
protected java.lang.Long quantitationTypeMappingId
| Constructor Detail |
|---|
public TransformationImpl()
| Method Detail |
|---|
protected void init()
init in class BioEventImpl
public Transformation[] searchTransformations(TransformationSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
Transformation objects that
satisfy the given TransformationSearchCriteria.
criteria - The TransformationSearchCriteria
which represents a query for Transformation objects.
Transformation objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setDerivedBioAssayDataTarget(DerivedBioAssayData p_derivedBioAssayDataTarget)
Transformation object.
setDerivedBioAssayDataTarget in interface Transformationp_derivedBioAssayDataTarget - The new value for derivedBioAssayDataTarget.Transformation.getDerivedBioAssayDataTarget()public DerivedBioAssayData getDerivedBioAssayDataTarget()
TransformationTransformation object's derivedBioAssayDataTarget attribute.
getDerivedBioAssayDataTarget in interface Transformationgov.nih.nci.mageom.bean.BioAssayData.DerivedBioAssayData The value of derivedBioAssayDataTarget.Transformation.getDerivedBioAssayDataTarget()public void setBioAssayDataSources(BioAssayData[] p_bioAssayDataSources)
Transformation object.
setBioAssayDataSources in interface Transformationp_bioAssayDataSources - The new value for bioAssayDataSources.Transformation.getBioAssayDataSources()public BioAssayData[] getBioAssayDataSources()
TransformationTransformation object's bioAssayDataSources attribute.
getBioAssayDataSources in interface Transformationgov.nih.nci.mageom.bean.BioAssayData.BioAssayData[] The value of bioAssayDataSources.Transformation.getBioAssayDataSources()public void setBioAssayMapping(BioAssayMapping p_bioAssayMapping)
Transformation object.
setBioAssayMapping in interface Transformationp_bioAssayMapping - The new value for bioAssayMapping.Transformation.getBioAssayMapping()public BioAssayMapping getBioAssayMapping()
TransformationTransformation object's bioAssayMapping attribute.
getBioAssayMapping in interface Transformationgov.nih.nci.mageom.bean.BioAssayData.BioAssayMapping The value of bioAssayMapping.Transformation.getBioAssayMapping()public void setDesignElementMapping(DesignElementMapping p_designElementMapping)
Transformation object.
setDesignElementMapping in interface Transformationp_designElementMapping - The new value for designElementMapping.Transformation.getDesignElementMapping()public DesignElementMapping getDesignElementMapping()
TransformationTransformation object's designElementMapping attribute.
getDesignElementMapping in interface Transformationgov.nih.nci.mageom.bean.BioAssayData.DesignElementMapping The value of designElementMapping.Transformation.getDesignElementMapping()public void setQuantitationTypeMapping(QuantitationTypeMapping p_quantitationTypeMapping)
Transformation object.
setQuantitationTypeMapping in interface Transformationp_quantitationTypeMapping - The new value for quantitationTypeMapping.Transformation.getQuantitationTypeMapping()public QuantitationTypeMapping getQuantitationTypeMapping()
TransformationTransformation object's quantitationTypeMapping attribute.
getQuantitationTypeMapping in interface Transformationgov.nih.nci.mageom.bean.BioAssayData.QuantitationTypeMapping The value of quantitationTypeMapping.Transformation.getQuantitationTypeMapping()public int getBioAssayDataSourcesCount()
BioAssayData
associated with this Transformation object.
Transformation.getBioAssayDataSources()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class BioEventImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class BioEventImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class BioEventImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class BioEventImplpublic java.lang.String toString()
toString in class BioEventImpl
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