A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

A

AbstractEnhancedSearchCriteriaFactory - Class in gov.nih.nci.mageom.search
 
AbstractEnhancedSearchCriteriaFactory() - Constructor for class gov.nih.nci.mageom.search.AbstractEnhancedSearchCriteriaFactory
 
AbstractSearchCriteriaFactory - Class in gov.nih.nci.mageom.search
 
AbstractSearchCriteriaFactory() - Constructor for class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
accession - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
The identifier used to look up the record.
ACCESSION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.accession.
accessions - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
accessionsCount - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
The count of DatabaseEntry objects.
accessionVersion - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
The appropriate version of the accession (if applicable).
ACCESSIONVERSION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.accessionVersion.
action - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Indicates whether an action is a creation or a modification.
action - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
DOCUMENT ME
ACTION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.action.
actionId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
The internal ID of the associated action object.
actionMeasurement - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
The measurement of an action, time exposed, speed of centrifuge, etc.
actionMeasurementId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
The internal ID of the associated actionMeasurement object.
activityDate - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
When the protocol was applied.
ACTIVITYDATE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ProtocolApplication.activityDate.
add(DerivedBioAssaySearchCriterion) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioAssaySearchCriteria
Add criterion using generic approach.
add(DerivedBioAssaySearchCriterion) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.DerivedBioAssaySearchCriteriaImpl
 
add(MeasuredBioAssaySearchCriterion) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.MeasuredBioAssaySearchCriteriaImpl
 
add(MeasuredBioAssaySearchCriterion) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioAssaySearchCriteria
Add criterion using generic approach.
add(EnhancedSearchCriterion) - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
 
add(ExperimentSearchCriterion) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Add criterion using generic approach.
add(ExperimentSearchCriterion) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
addReporterSummary(ReporterSummary) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
address - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
DOCUMENT ME
ADDRESS_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.address.
addWildcards(Object[]) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
addWildcards(Object[], boolean, boolean) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
adjustments - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
DOCUMENT ME
adjustmentsCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
The count of ZoneDefect objects.
affiliation - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
DOCUMENT ME
affiliationId - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
The internal ID of the associated affiliation object.
AFFILIATIONID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id.
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.impl.DescribableImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
 
allAssociationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
 
AllBioAssayQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
AllBioAssayQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.AllBioAssayQuery
 
AllDerivedBioAssayQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
AllDerivedBioAssayQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.AllDerivedBioAssayQuery
 
AllExperimentQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
 
AllExperimentQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.AllExperimentQuery
 
AllMeasuredBioAssayQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
AllMeasuredBioAssayQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.AllMeasuredBioAssayQuery
 
analysisResults - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
DOCUMENT ME
analysisResultsCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
The count of BioAssayDataCluster objects.
ANALYSISRESULTSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster.id.
AND - Static variable in class gov.nih.nci.common.query.BooleanOperationEnum
 
AND_VALUE - Static variable in class gov.nih.nci.common.query.BooleanOperationEnum
 
annotations - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
DOCUMENT ME
annotations - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
DOCUMENT ME
annotationsCount - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
The count of OntologyEntry objects.
annotationsCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
The count of OntologyEntry objects.
appendOrderBy(StringBuffer, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an ORDER BY to an SQL query.
appendWhere(StringBuffer, String, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an item comparing a column to a pattern to an SQL WHERE clause.
appendWhere(StringBuffer, String, Long) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an item comparing a column to a pattern to an SQL WHERE clause.
appendWhere(StringBuffer, String, Long, boolean) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an item comparing a column to a pattern to an SQL WHERE clause.
appendWhere(StringBuffer, String, String, boolean) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an item comparing a column to a pattern to an SQL WHERE clause.
appendWhere(StringBuffer, String, String, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an item comparing two columns to an SQL WHERE clause.
appendWhere(StringBuffer, String, String, String, boolean) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an item comparing two columns to an SQL WHERE clause.
appendWhere(StringBuffer, String, String[]) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends a list of items to an SQL WHERE clause.
appendWhere(StringBuffer, String, String, String, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends a date to an SQL WHERE clause.
appendWhere(StringBuffer, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an EXISTS subquery to an SQL WHERE clause.
appendWhere(StringBuffer, String, Boolean) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Appends an boolean to an SQL WHERE clause using 0/1 paradigm.
Array - Interface in gov.nih.nci.mageom.domain.Array
The physical substrate along with its features and their annotation
array - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
DOCUMENT ME
arrayDesign - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
DOCUMENT ME
ArrayDesign - Interface in gov.nih.nci.mageom.domain.ArrayDesign
Describes the design of an gene expression layout.
arrayDesignId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
The internal ID of the associated arrayDesign object.
ARRAYDESIGNID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.id.
ArrayDesignIdCriterion - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Simple criterion POJO.
ArrayDesignIdCriterion(Long[]) - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignIdCriterion
 
ArrayDesignImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
Describes the design of an gene expression layout.
ArrayDesignImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Default constructor
ArrayDesignNameCriterion - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Simple criterion POJO.
ArrayDesignNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignNameCriterion
 
ArrayDesignProvider - Class in gov.nih.nci.mageom.persistence.ojb.mn
 
ArrayDesignProvider() - Constructor for class gov.nih.nci.mageom.persistence.ojb.mn.ArrayDesignProvider
 
ArrayDesignReporterQueryResultBean - Class in gov.nih.nci.common.persistence.enhanced.ArrayDesign
 
ArrayDesignReporterQueryResultBean() - Constructor for class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
ArrayDesignReporterSummary - Interface in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Coarse-grained data representation of significant ArrayDesign and Reporter information.
ArrayDesignReporterSummaryBean - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl
 
ArrayDesignReporterSummaryBean() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
ArrayDesignReporterSummaryCriterion - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Base/Marker class for all Array Design Reporter Summary enhanced search criterion.
ArrayDesignReporterSummaryCriterion() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummaryCriterion
 
ArrayDesignReporterSummaryQuery - Class in gov.nih.nci.common.persistence.enhanced.ArrayDesign
 
ArrayDesignReporterSummaryQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
ArrayDesignReporterSummarySearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Specialized search routine to search for array design data.
ArrayDesignReporterSummarySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl
Represents a query for ArrayDesignReporterSummary objects.
ArrayDesignReporterSummarySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl
 
ArrayDesignSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for ArrayDesign objects.
ArrayDesignSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for ArrayDesign objects.
ArrayDesignSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
ArrayGroup - Interface in gov.nih.nci.mageom.domain.Array
An array package is a physical platform that contains one or more arrays that are separately addressable (e.g.
arrayGroup - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
DOCUMENT ME
arrayGroupId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
The internal ID of the associated arrayGroup object.
ARRAYGROUPID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.id.
ArrayGroupImpl - Class in gov.nih.nci.mageom.domain.Array.impl
An array package is a physical platform that contains one or more arrays that are separately addressable (e.g.
ArrayGroupImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Default constructor
ArrayGroupSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for ArrayGroup objects.
ArrayGroupSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for ArrayGroup objects.
ArrayGroupSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
arrayId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
The internal ID of the associated array object.
arrayIdentifier - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
An identifying string, e.g.
ARRAYIDENTIFIER_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayIdentifier.
ArrayImpl - Class in gov.nih.nci.mageom.domain.Array.impl
The physical substrate along with its features and their annotation
ArrayImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Default constructor
ArrayManufacture - Interface in gov.nih.nci.mageom.domain.Array
Describes the process by which arrays are produced.
ArrayManufactureDeviation - Interface in gov.nih.nci.mageom.domain.Array
Stores information of the potential difference between an array design and arrays that have been manufactured using that design (e.g.
ArrayManufactureDeviationImpl - Class in gov.nih.nci.mageom.domain.Array.impl
Stores information of the potential difference between an array design and arrays that have been manufactured using that design (e.g.
ArrayManufactureDeviationImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Default constructor
arrayManufactureDeviations - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
DOCUMENT ME
arrayManufactureDeviationsCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
The count of ArrayManufactureDeviation objects.
ArrayManufactureDeviationSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for ArrayManufactureDeviation objects.
ArrayManufactureDeviationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for ArrayManufactureDeviation objects.
ArrayManufactureDeviationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureDeviationSearchCriteriaImpl
 
ArrayManufactureImpl - Class in gov.nih.nci.mageom.domain.Array.impl
Describes the process by which arrays are produced.
ArrayManufactureImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Default constructor
ArrayManufacturer - Class in gov.nih.nci.mageom.persistence.ojb.mn
 
ArrayManufacturer() - Constructor for class gov.nih.nci.mageom.persistence.ojb.mn.ArrayManufacturer
 
arrayManufacturers - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
DOCUMENT ME
arrayManufacturersCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
The count of Contact objects.
ARRAYMANUFACTURERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
ArrayManufactureSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for ArrayManufacture objects.
ArrayManufactureSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for ArrayManufacture objects.
ArrayManufactureSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
arrays - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
DOCUMENT ME
arrays - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
DOCUMENT ME
arraysCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
The count of Array objects.
arraysCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
The count of Array objects.
ArraySearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for Array objects.
ArraySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for Array objects.
ArraySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
arraySpacingX - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
If there exist more than one array on a slide or a chip, then the spacing between the arrays is so that scanning / feature extraction software can crop images representing 1 unique
ARRAYSPACINGX_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.arraySpacingX.
arraySpacingY - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
If there exist more than one array on a slide or a chip, then the spacing between the arrays is so that scanning / feature extraction software can crop images representing 1 unique
ARRAYSPACINGY_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.arraySpacingY.
ArrayUtils - Class in gov.nih.nci.common.util
 
ArrayUtils() - Constructor for class gov.nih.nci.common.util.ArrayUtils
 
arrayXOrigin - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
This can indicate the x position on a slide, chip, etc.
ARRAYXORIGIN_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayXOrigin.
arrayYOrigin - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
This can indicate the y position on a slide, chip, etc.
ARRAYYORIGIN_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayYOrigin.
ascending - Variable in class gov.nih.nci.common.query.OrderByField
 
AssociationCriterion - Interface in gov.nih.nci.common.query
 
associationCriterion - Variable in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
AssociationCriterionImpl - Class in gov.nih.nci.common.query.impl
 
AssociationCriterionImpl(String, Query, boolean) - Constructor for class gov.nih.nci.common.query.impl.AssociationCriterionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.impl.DescribableImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
 
associationMethods - Static variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
 
associations - Variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
DOCUMENT ME
associationsCount - Variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
The count of OntologyEntry objects.
Audit - Interface in gov.nih.nci.mageom.domain.AuditAndSecurity
Tracks information on the contact that creates or modifies an object.
AuditImpl - Class in gov.nih.nci.mageom.domain.AuditAndSecurity.impl
Tracks information on the contact that creates or modifies an object.
AuditImpl() - Constructor for class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Default constructor
AuditSearchCriteria - Interface in gov.nih.nci.mageom.search.AuditAndSecurity
Represents a query for Audit objects.
AuditSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.AuditAndSecurity.impl
Represents a query for Audit objects.
AuditSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
auditTrail - Variable in class gov.nih.nci.mageom.domain.impl.DescribableImpl
DOCUMENT ME
auditTrailCount - Variable in class gov.nih.nci.mageom.domain.impl.DescribableImpl
The count of Audit objects.
authors - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
AUTHORS_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.authors.

B

barcode - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Identifier for the ArrayGroup.
BARCODE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.barcode.
BaseQueryImpl - Class in gov.nih.nci.common.persistence.enhanced
 
BaseQueryImpl() - Constructor for class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
basis - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
How the evidence for a SeqFeature was determined.
BASIS_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeature.basis.
BibliographicReference - Interface in gov.nih.nci.mageom.domain.BQS
Attributes for the most common criteria and association with OntologyEntry allows criteria to be specified for searching for a Bibliographic reference.
BibliographicReferenceImpl - Class in gov.nih.nci.mageom.domain.BQS.impl
Attributes for the most common criteria and association with OntologyEntry allows criteria to be specified for searching for a Bibliographic reference.
BibliographicReferenceImpl() - Constructor for class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Default constructor
bibliographicReferences - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
DOCUMENT ME
bibliographicReferencesCount - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
The count of BibliographicReference objects.
BibliographicReferenceSearchCriteria - Interface in gov.nih.nci.mageom.search.BQS
Represents a query for BibliographicReference objects.
BibliographicReferenceSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BQS.impl
Represents a query for BibliographicReference objects.
BibliographicReferenceSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
bind(String, Remote) - Method in class gov.nih.nci.common.remote.rmi.RMIBinder
 
BioAssay - Interface in gov.nih.nci.mageom.domain.BioAssay
An abstract class which represents both physical and computational groupings of arrays and biomaterials.
bioAssay - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
DOCUMENT ME
BioAssayByExperimentIdQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
BioAssayByExperimentIdQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.BioAssayByExperimentIdQuery
 
BioAssayByExperimentNameQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
BioAssayByExperimentNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.BioAssayByExperimentNameQuery
 
BioAssayCreation - Interface in gov.nih.nci.mageom.domain.BioAssay
The process by which an array and one or more biomaterials are combined to create a bioAssayCreation.
bioAssayCreation - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
DOCUMENT ME
bioAssayCreationId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
The internal ID of the associated bioAssayCreation object.
BioAssayCreationImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
The process by which an array and one or more biomaterials are combined to create a bioAssayCreation.
BioAssayCreationImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Default constructor
BioAssayCreationSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for BioAssayCreation objects.
BioAssayCreationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for BioAssayCreation objects.
BioAssayCreationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayCreationSearchCriteriaImpl
 
BioAssayData - Interface in gov.nih.nci.mageom.domain.BioAssayData
Represents the dataset created when the BioAssays are created.
bioAssayData - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
DOCUMENT ME
BioAssayDataCluster - Interface in gov.nih.nci.mageom.domain.HigherLevelAnalysis
A mathematical method of higher level analysis whereby BioAssayData are grouped together into nodes.
BioAssayDataClusterImpl - Class in gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl
A mathematical method of higher level analysis whereby BioAssayData are grouped together into nodes.
BioAssayDataClusterImpl() - Constructor for class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
Default constructor
BioAssayDataClusterSearchCriteria - Interface in gov.nih.nci.mageom.search.HigherLevelAnalysis
Represents a query for BioAssayDataCluster objects.
BioAssayDataClusterSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.HigherLevelAnalysis.impl
Represents a query for BioAssayDataCluster objects.
BioAssayDataClusterSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
 
bioAssayDataCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
The count of BioAssayData objects.
BIOASSAYDATAID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id.
BioAssayDataImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
Represents the dataset created when the BioAssays are created.
BioAssayDataImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Default constructor
BioAssayDataSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for BioAssayData objects.
BioAssayDataSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for BioAssayData objects.
BioAssayDataSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDataSearchCriteriaImpl
 
bioAssayDataSources - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
DOCUMENT ME
bioAssayDataSourcesCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
The count of BioAssayData objects.
BIOASSAYDATASOURCESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id.
BioAssayDatum - Interface in gov.nih.nci.mageom.domain.BioAssayData
A single cell of the quantitation, bioAssay, designElement matrix.
BioAssayDatumImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
A single cell of the quantitation, bioAssay, designElement matrix.
BioAssayDatumImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Default constructor
BioAssayDatumSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for BioAssayDatum objects.
BioAssayDatumSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for BioAssayDatum objects.
BioAssayDatumSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
BioAssayDimension - Interface in gov.nih.nci.mageom.domain.BioAssayData
An ordered list of bioAssays.
bioAssayDimension - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
DOCUMENT ME
bioAssayDimension - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
DOCUMENT ME
bioAssayDimensionId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
The internal ID of the associated bioAssayDimension object.
bioAssayDimensionId - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
The internal ID of the associated bioAssayDimension object.
BioAssayDimensionImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
An ordered list of bioAssays.
BioAssayDimensionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
Default constructor
BioAssayDimensionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for BioAssayDimension objects.
BioAssayDimensionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for BioAssayDimension objects.
BioAssayDimensionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
 
bioAssayFactorValues - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
DOCUMENT ME
bioAssayFactorValuesCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
The count of FactorValue objects.
bioAssayId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
The internal ID of the associated bioAssay object.
BIOASSAYID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id.
BioAssayImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
An abstract class which represents both physical and computational groupings of arrays and biomaterials.
BioAssayImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Default constructor
BioAssayMap - Interface in gov.nih.nci.mageom.domain.BioAssayData
The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays.
BioAssayMapImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays.
BioAssayMapImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
Default constructor
BioAssayMapping - Interface in gov.nih.nci.mageom.domain.BioAssayData
Container of the mappings of the input BioAssay dimensions to the output BioAssay dimension.
bioAssayMapping - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
DOCUMENT ME
bioAssayMappingId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
The internal ID of the associated bioAssayMapping object.
BioAssayMappingImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
Container of the mappings of the input BioAssay dimensions to the output BioAssay dimension.
BioAssayMappingImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
Default constructor
BioAssayMappingSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for BioAssayMapping objects.
BioAssayMappingSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for BioAssayMapping objects.
BioAssayMappingSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
 
bioAssayMaps - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
DOCUMENT ME
bioAssayMapsCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
The count of BioAssayMap objects.
BioAssayMapSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for BioAssayMap objects.
BioAssayMapSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for BioAssayMap objects.
BioAssayMapSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
BIOASSAYMAPSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap.id.
bioAssayMapTarget - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
DOCUMENT ME
bioAssayMapTargetId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
The internal ID of the associated bioAssayMapTarget object.
BIOASSAYMAPTARGETID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay.id.
bioAssays - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
DOCUMENT ME
bioAssays - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
DOCUMENT ME
bioAssaysCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
The count of BioAssay objects.
bioAssaysCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
The count of BioAssay objects.
BioAssaySearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for BioAssay objects.
BioAssaySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for BioAssay objects.
BioAssaySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
 
BioAssaySearchCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Base/Marker class for all BioAssay (Derived | Measured) enhanced search criterion.
BioAssaySearchCriterion() - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.BioAssaySearchCriterion
 
BIOASSAYSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id.
BIOASSAYSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id.
BioAssayTreatment - Interface in gov.nih.nci.mageom.domain.BioAssay
The event which records the process by which PhysicalBioAssays are processed (typically washing, blocking, etc...).
BioAssayTreatmentImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
The event which records the process by which PhysicalBioAssays are processed (typically washing, blocking, etc...).
BioAssayTreatmentImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
Default constructor
bioAssayTreatments - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
DOCUMENT ME
bioAssayTreatmentsCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
The count of BioAssayTreatment objects.
BioAssayTreatmentSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for BioAssayTreatment objects.
BioAssayTreatmentSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for BioAssayTreatment objects.
BioAssayTreatmentSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
 
bioAssayTupleData - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
DOCUMENT ME
bioAssayTupleDataCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
The count of BioAssayDatum objects.
BioDataCube - Interface in gov.nih.nci.mageom.domain.BioAssayData
A three-dimensional cube representation of the data.
BioDataCubeImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
A three-dimensional cube representation of the data.
BioDataCubeImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
Default constructor
BioDataCubeRowReader - Class in gov.nih.nci.mageom.util
 
BioDataCubeRowReader(ClassDescriptor) - Constructor for class gov.nih.nci.mageom.util.BioDataCubeRowReader
 
BioDataCubeSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for BioDataCube objects.
BioDataCubeSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for BioDataCube objects.
BioDataCubeSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataCubeSearchCriteriaImpl
 
BioDataTuples - Interface in gov.nih.nci.mageom.domain.BioAssayData
A relational, tuple representation of the data.
BioDataTuplesImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
A relational, tuple representation of the data.
BioDataTuplesImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
Default constructor
BioDataTuplesSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for BioDataTuples objects.
BioDataTuplesSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for BioDataTuples objects.
BioDataTuplesSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataTuplesSearchCriteriaImpl
 
BioDataValues - Interface in gov.nih.nci.mageom.domain.BioAssayData
The actual values for the BioAssayCube.
bioDataValues - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
DOCUMENT ME
bioDataValuesId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
The internal ID of the associated bioDataValues object.
BioDataValuesImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
The actual values for the BioAssayCube.
BioDataValuesImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
Default constructor
BioDataValuesSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for BioDataValues objects.
BioDataValuesSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for BioDataValues objects.
BioDataValuesSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataValuesSearchCriteriaImpl
 
BioEvent - Interface in gov.nih.nci.mageom.domain.BioEvent
An abstract class to capture the concept of an event (either in the laboratory or a computational analysis).
BioEventImpl - Class in gov.nih.nci.mageom.domain.BioEvent.impl
An abstract class to capture the concept of an event (either in the laboratory or a computational analysis).
BioEventImpl() - Constructor for class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
Default constructor
BioEventSearchCriteria - Interface in gov.nih.nci.mageom.search.BioEvent
Represents a query for BioEvent objects.
BioEventSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioEvent.impl
Represents a query for BioEvent objects.
BioEventSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioEvent.impl.BioEventSearchCriteriaImpl
 
biologicalCharacteristics - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
DOCUMENT ME
biologicalCharacteristicsCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
The count of BioSequence objects.
BIOLOGICALCHARACTERISTICSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id.
bioMaterial - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
DOCUMENT ME
BioMaterial - Interface in gov.nih.nci.mageom.domain.BioMaterial
BioMaterial is an abstract class that represents the important substances such as cells, tissues, DNA, proteins, etc...
bioMaterial - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
DOCUMENT ME
bioMaterialId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
The internal ID of the associated bioMaterial object.
bioMaterialId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
The internal ID of the associated bioMaterial object.
BIOMATERIALID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id.
BIOMATERIALID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id.
BioMaterialImpl - Class in gov.nih.nci.mageom.domain.BioMaterial.impl
BioMaterial is an abstract class that represents the important substances such as cells, tissues, DNA, proteins, etc...
BioMaterialImpl() - Constructor for class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Default constructor
BioMaterialMeasurement - Interface in gov.nih.nci.mageom.domain.BioMaterial
A BioMaterialMeasurement is a pairing of a source BioMaterial and an amount (Measurement) of that BioMaterial.
BioMaterialMeasurementImpl - Class in gov.nih.nci.mageom.domain.BioMaterial.impl
A BioMaterialMeasurement is a pairing of a source BioMaterial and an amount (Measurement) of that BioMaterial.
BioMaterialMeasurementImpl() - Constructor for class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
Default constructor
BioMaterialMeasurementSearchCriteria - Interface in gov.nih.nci.mageom.search.BioMaterial
Represents a query for BioMaterialMeasurement objects.
BioMaterialMeasurementSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioMaterial.impl
Represents a query for BioMaterialMeasurement objects.
BioMaterialMeasurementSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
 
bioMaterialPlateCol - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
The plate column from which a biomaterial was obtained.
BIOMATERIALPLATECOL_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateCol.
bioMaterialPlateIdentifier - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
The plate from which a biomaterial was obtained.
BIOMATERIALPLATEIDENTIFIER_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateIdentifier.
bioMaterialPlateRow - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
The plate row from which a biomaterial was obtained.
BIOMATERIALPLATEROW_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateRow.
BioMaterialSearchCriteria - Interface in gov.nih.nci.mageom.search.BioMaterial
Represents a query for BioMaterial objects.
BioMaterialSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioMaterial.impl
Represents a query for BioMaterial objects.
BioMaterialSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialSearchCriteriaImpl
 
BioSample - Interface in gov.nih.nci.mageom.domain.BioMaterial
BioSamples are products of treatments that are of interest.
BioSampleImpl - Class in gov.nih.nci.mageom.domain.BioMaterial.impl
BioSamples are products of treatments that are of interest.
BioSampleImpl() - Constructor for class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
Default constructor
BioSampleSearchCriteria - Interface in gov.nih.nci.mageom.search.BioMaterial
Represents a query for BioSample objects.
BioSampleSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioMaterial.impl
Represents a query for BioSample objects.
BioSampleSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioMaterial.impl.BioSampleSearchCriteriaImpl
 
BioSequence - Interface in gov.nih.nci.mageom.domain.BioSequence
A BioSequence is a representation of a DNA, RNA, or protein sequence.
BioSequenceImpl - Class in gov.nih.nci.mageom.domain.BioSequence.impl
A BioSequence is a representation of a DNA, RNA, or protein sequence.
BioSequenceImpl() - Constructor for class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Default constructor
BioSequenceSearchCriteria - Interface in gov.nih.nci.mageom.search.BioSequence
Represents a query for BioSequence objects.
BioSequenceSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioSequence.impl
Represents a query for BioSequence objects.
BioSequenceSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
BioSource - Interface in gov.nih.nci.mageom.domain.BioMaterial
The BioSource is the original source material before any treatment events.
BioSourceContact - Class in gov.nih.nci.mageom.persistence.ojb.mn
 
BioSourceContact() - Constructor for class gov.nih.nci.mageom.persistence.ojb.mn.BioSourceContact
 
BioSourceImpl - Class in gov.nih.nci.mageom.domain.BioMaterial.impl
The BioSource is the original source material before any treatment events.
BioSourceImpl() - Constructor for class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
Default constructor
BioSourceSearchCriteria - Interface in gov.nih.nci.mageom.search.BioMaterial
Represents a query for BioSource objects.
BioSourceSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioMaterial.impl
Represents a query for BioSource objects.
BioSourceSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
 
Boolean2IntFieldConversion - Class in gov.nih.nci.caarray.services.util.ojb.conversions
 
Boolean2IntFieldConversion() - Constructor for class gov.nih.nci.caarray.services.util.ojb.conversions.Boolean2IntFieldConversion
 
booleanOperation - Variable in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
BooleanOperationEnum - Class in gov.nih.nci.common.query
 
buildLikeCriteria(String[], Object) - Method in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
buildLikeCriteria(String[], Object, boolean) - Method in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
buildLikeSQL(String[], String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
buildLikeSQL(String[], String, boolean) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
buildParamsMap(URL) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
buildUpperSQL(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
buildXMLMethods(Element, Hashtable, ArrayList, Object, Document) - Method in class gov.nih.nci.mageom.util.XMLUtility
buildXMLMethods()

C

canonical - Variable in class gov.nih.nci.mageom.util.DOMWriter
Canonical output.
caseInsensitive - Variable in class gov.nih.nci.common.query.impl.CriterionImpl
 
caseInsensitive(String) - Method in class gov.nih.nci.mageom.util.DBSpecific
Converts a conditional from an SQL SELECT query so that it is case-insensitive.
caseInsensitive(String) - Method in class gov.nih.nci.mageom.util.OracleSpecific
Converts a conditional from an SQL SELECT query so that it is case-insensitive.
category - Variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
The category to which this entry belongs.
category - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
DOCUMENT ME
CATEGORY_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.category.
categoryId - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
The internal ID of the associated category object.
Channel - Interface in gov.nih.nci.mageom.domain.BioAssay
A channel represents an independent acquisition scheme for the ImageAcquisition event, typically a wavelength.
channel - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
DOCUMENT ME
channelId - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
The internal ID of the associated channel object.
CHANNELID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id.
ChannelImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
A channel represents an independent acquisition scheme for the ImageAcquisition event, typically a wavelength.
ChannelImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
Default constructor
channels - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
DOCUMENT ME
channels - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
DOCUMENT ME
channelsCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
The count of Channel objects.
channelsCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
The count of Channel objects.
ChannelSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for Channel objects.
ChannelSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for Channel objects.
ChannelSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
 
CHANNELSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id.
characteristics - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
DOCUMENT ME
characteristicsCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
The count of OntologyEntry objects.
ChromosomeValueCriterion - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Simple criterion POJO.
ChromosomeValueCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ChromosomeValueCriterion
 
clone() - Method in interface gov.nih.nci.common.search.session.SecureSession
Returns a deep copy of this object.
clone() - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
clusterBioAssayData - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
DOCUMENT ME
clusterBioAssayDataId - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
The internal ID of the associated clusterBioAssayData object.
CLUSTERBIOASSAYDATAID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id.
CollectionUtils - Class in gov.nih.nci.common.util
 
CollectionUtils() - Constructor for class gov.nih.nci.common.util.CollectionUtils
 
column - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
column position in the ZoneGroup.
column - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
column position in the Zone.
COLUMN_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.column.
COLUMN_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.column.
CommonQueryHelper - Class in gov.nih.nci.common.persistence.enhanced
 
CommonQueryHelper() - Constructor for class gov.nih.nci.common.persistence.enhanced.CommonQueryHelper
 
componentCompounds - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
DOCUMENT ME
componentCompoundsCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
The count of CompoundMeasurement objects.
composite - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
DOCUMENT ME
CompositeCompositeMap - Interface in gov.nih.nci.mageom.domain.DesignElement
A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence.
CompositeCompositeMapImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence.
CompositeCompositeMapImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
Default constructor
compositeCompositeMaps - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
DOCUMENT ME
compositeCompositeMapsCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
The count of CompositeCompositeMap objects.
CompositeCompositeMapSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for CompositeCompositeMap objects.
CompositeCompositeMapSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for CompositeCompositeMap objects.
CompositeCompositeMapSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
 
CompositeGroup - Interface in gov.nih.nci.mageom.domain.ArrayDesign
Allows specification of the type of Composite Design Element.
CompositeGroupImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
Allows specification of the type of Composite Design Element.
CompositeGroupImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
Default constructor
compositeGroups - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
DOCUMENT ME
compositeGroupsCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
The count of CompositeGroup objects.
CompositeGroupSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for CompositeGroup objects.
CompositeGroupSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for CompositeGroup objects.
CompositeGroupSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
 
COMPOSITEGROUPSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.CompositeGroup.id.
compositeId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
The internal ID of the associated composite object.
COMPOSITEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id.
CompositePosition - Interface in gov.nih.nci.mageom.domain.DesignElement
The location in the compositeSequence target's sequence to which a source compositeSequence maps.
CompositePositionImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
The location in the compositeSequence target's sequence to which a source compositeSequence maps.
CompositePositionImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
Default constructor
CompositePositionSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for CompositePosition objects.
CompositePositionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for CompositePosition objects.
CompositePositionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
 
compositePositionSources - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
DOCUMENT ME
compositePositionSourcesCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
The count of CompositePosition objects.
CompositeSequence - Interface in gov.nih.nci.mageom.domain.DesignElement
A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
compositeSequence - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
DOCUMENT ME
compositeSequence - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
DOCUMENT ME
CompositeSequenceDimension - Interface in gov.nih.nci.mageom.domain.BioAssayData
Specialized DesignElementDimension to hold CompositeSequences.
CompositeSequenceDimensionImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
Specialized DesignElementDimension to hold CompositeSequences.
CompositeSequenceDimensionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
Default constructor
CompositeSequenceDimensionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for CompositeSequenceDimension objects.
CompositeSequenceDimensionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for CompositeSequenceDimension objects.
CompositeSequenceDimensionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
 
compositeSequenceId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
The internal ID of the associated compositeSequence object.
compositeSequenceId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
The internal ID of the associated compositeSequence object.
COMPOSITESEQUENCEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id.
COMPOSITESEQUENCEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id.
CompositeSequenceImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
CompositeSequenceImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Default constructor
compositeSequences - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
DOCUMENT ME
compositeSequences - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
DOCUMENT ME
compositeSequencesCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
The count of CompositeSequence objects.
compositeSequencesCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
The count of CompositeSequence objects.
CompositeSequenceSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for CompositeSequence objects.
CompositeSequenceSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for CompositeSequence objects.
CompositeSequenceSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
 
COMPOSITESEQUENCESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id.
COMPOSITESEQUENCESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id.
Compound - Interface in gov.nih.nci.mageom.domain.BioMaterial
A Compound can be a simple compound such as SDS (sodium dodecyl sulfate).
compound - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
DOCUMENT ME
compoundId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
The internal ID of the associated compound object.
COMPOUNDID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id.
CompoundImpl - Class in gov.nih.nci.mageom.domain.BioMaterial.impl
A Compound can be a simple compound such as SDS (sodium dodecyl sulfate).
CompoundImpl() - Constructor for class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Default constructor
compoundIndices - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
DOCUMENT ME
compoundIndicesCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
The count of OntologyEntry objects.
CompoundMeasurement - Interface in gov.nih.nci.mageom.domain.BioMaterial
A CompoundMeasurement is a pairing of a source Compound and an amount (Measurement) of that Compound.
CompoundMeasurementImpl - Class in gov.nih.nci.mageom.domain.BioMaterial.impl
A CompoundMeasurement is a pairing of a source Compound and an amount (Measurement) of that Compound.
CompoundMeasurementImpl() - Constructor for class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
Default constructor
compoundMeasurements - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
DOCUMENT ME
compoundMeasurementsCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
The count of CompoundMeasurement objects.
CompoundMeasurementSearchCriteria - Interface in gov.nih.nci.mageom.search.BioMaterial
Represents a query for CompoundMeasurement objects.
CompoundMeasurementSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioMaterial.impl
Represents a query for CompoundMeasurement objects.
CompoundMeasurementSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
 
CompoundSearchCriteria - Interface in gov.nih.nci.mageom.search.BioMaterial
Represents a query for Compound objects.
CompoundSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioMaterial.impl
Represents a query for Compound objects.
CompoundSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
 
ConcentrationUnit - Interface in gov.nih.nci.mageom.domain.Measurement
Concentration
ConcentrationUnitImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
Concentration
ConcentrationUnitImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
Default constructor
ConcentrationUnitSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for ConcentrationUnit objects.
ConcentrationUnitSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for ConcentrationUnit objects.
ConcentrationUnitSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
 
conditional - Variable in class gov.nih.nci.common.query.impl.CriterionImpl
 
ConditionalEnum - Class in gov.nih.nci.common.query
 
ConfidenceIndicator - Interface in gov.nih.nci.mageom.domain.QuantitationType
Indication of some measure of confidence for a standard quantitation type.
ConfidenceIndicatorImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
Indication of some measure of confidence for a standard quantitation type.
ConfidenceIndicatorImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
Default constructor
confidenceIndicators - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
DOCUMENT ME
confidenceIndicatorsCount - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
The count of ConfidenceIndicator objects.
ConfidenceIndicatorSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for ConfidenceIndicator objects.
ConfidenceIndicatorSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for ConfidenceIndicator objects.
ConfidenceIndicatorSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
 
Contact - Interface in gov.nih.nci.mageom.domain.AuditAndSecurity
A contact is either a person or an organization.
ContactImpl - Class in gov.nih.nci.mageom.domain.AuditAndSecurity.impl
A contact is either a person or an organization.
ContactImpl() - Constructor for class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Default constructor
contacts - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
DOCUMENT ME
contactsCount - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
The count of Contact objects.
ContactSearchCriteria - Interface in gov.nih.nci.mageom.search.AuditAndSecurity
Represents a query for Contact objects.
ContactSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.AuditAndSecurity.impl
Represents a query for Contact objects.
ContactSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
CONTACTSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
containedFeatures - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
DOCUMENT ME
containedFeaturesCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
The count of Feature objects.
CONTAINEDFEATURESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id.
containsWildcards(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Determines if a string contains wildcards.
containsWildcards(Collection) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
controlFeatures - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
DOCUMENT ME
controlFeaturesCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
The count of Feature objects.
CONTROLFEATURESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id.
controlledFeatures - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
DOCUMENT ME
controlledFeaturesCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
The count of Feature objects.
CONTROLLEDFEATURESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id.
controlType - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
DOCUMENT ME
controlTypeId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
The internal ID of the associated controlType object.
convert(Query) - Static method in class gov.nih.nci.common.persistence.Query2PBQ
 
convert(SearchCriteria) - Static method in class gov.nih.nci.common.persistence.SC2Query
 
convert(String, String, Object) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
convertQuery(Query) - Method in class gov.nih.nci.common.persistence.Query2PBQ
 
convertToMilliseconds(int, int, int) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Converts a year, month, and day into milliseconds since whenever the time for the Date and Calendar classes start.
convertWildcards(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Turns non-SQL wildcards into SQL wildcards: * becomes %, and ? becomes _.
convertWildcards(Collection) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
coordinate - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
DOCUMENT ME
coordinateId - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
The internal ID of the associated coordinate object.
createAssociationElement(XMLMethodDescriptor, Object, Document) - Method in class gov.nih.nci.mageom.util.XMLUtility
 
CreateURL(String, Hashtable, Document) - Static method in class gov.nih.nci.mageom.util.XMLUtility
 
CreateURL(String, String, Hashtable, Document) - Static method in class gov.nih.nci.mageom.util.XMLUtility
 
criteriaProps - Variable in class gov.nih.nci.common.persistence.enhanced.ESQueryFactory
 
Criterion - Interface in gov.nih.nci.common.query
 
criterion - Variable in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
CriterionGroup - Interface in gov.nih.nci.common.query
 
criterionGroup - Variable in class gov.nih.nci.common.query.impl.QueryImpl
 
CriterionGroupImpl - Class in gov.nih.nci.common.query.impl
 
CriterionGroupImpl(BooleanOperationEnum) - Constructor for class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
CriterionImpl - Class in gov.nih.nci.common.query.impl
 
CriterionImpl(String, ConditionalEnum) - Constructor for class gov.nih.nci.common.query.impl.CriterionImpl
 
criterionProps - Variable in class gov.nih.nci.common.persistence.enhanced.ESQueryFactory
 
cube - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
Three dimension array, indexed by the three dimensions to provide the data for the
Cube - Class in gov.nih.nci.mageom.util.cubereader
Provides helpful methods for representing and loading the underlying three-dimensional array of a BioDataCube.
CubeReader - Interface in gov.nih.nci.mageom.util.cubereader
Interface to the data table based cube data reader subsystem.
CubeReaderFactory - Class in gov.nih.nci.mageom.util.cubereader
Creates cube readers.
currentHandler - Variable in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 

D

Database - Interface in gov.nih.nci.mageom.domain.Description
An address to a repository.
database - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
DOCUMENT ME
DatabaseContact - Class in gov.nih.nci.mageom.persistence.ojb.mn
 
DatabaseContact() - Constructor for class gov.nih.nci.mageom.persistence.ojb.mn.DatabaseContact
 
DatabaseEntry - Interface in gov.nih.nci.mageom.domain.Description
A reference to a record in a database.
DatabaseEntryImpl - Class in gov.nih.nci.mageom.domain.Description.impl
A reference to a record in a database.
DatabaseEntryImpl() - Constructor for class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Default constructor
DatabaseEntrySearchCriteria - Interface in gov.nih.nci.mageom.search.Description
Represents a query for DatabaseEntry objects.
DatabaseEntrySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Description.impl
Represents a query for DatabaseEntry objects.
DatabaseEntrySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
databaseId - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
The internal ID of the associated database object.
DATABASEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.id.
DatabaseImpl - Class in gov.nih.nci.mageom.domain.Description.impl
An address to a repository.
DatabaseImpl() - Constructor for class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Default constructor
databaseReferences - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
DOCUMENT ME
databaseReferencesCount - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
The count of DatabaseEntry objects.
DatabaseSearchCriteria - Interface in gov.nih.nci.mageom.search.Description
Represents a query for Database objects.
DatabaseSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Description.impl
Represents a query for Database objects.
DatabaseSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
dataType - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
DOCUMENT ME
dataType - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
DOCUMENT ME
dataType - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
DOCUMENT ME
dataTypeId - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
The internal ID of the associated dataType object.
dataTypeId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
The internal ID of the associated dataType object.
dataTypeId - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
The internal ID of the associated dataType object.
date - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
The date of a change.
DATE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.date.
DBSpecific - Class in gov.nih.nci.mageom.util
 
DBSpecific() - Constructor for class gov.nih.nci.mageom.util.DBSpecific
 
DEFAULT_SECURE_SESSION_CLASSNAME - Static variable in class gov.nih.nci.common.search.session.SecureSessionFactory
 
DEFAULT_SECURE_SESSION_LENGTH - Static variable in interface gov.nih.nci.common.search.session.SecureSessionManager
 
DefaultDerivedBioAssayCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
DefaultDerivedBioAssayCriterion() - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.DefaultDerivedBioAssayCriterion
 
DefaultExperimentFileCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
DefaultExperimentFileCriterion() - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.DefaultExperimentFileCriterion
 
DefaultExperimentSearchCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
DefaultExperimentSearchCriterion() - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.DefaultExperimentSearchCriterion
 
defaultHandler() - Static method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
DefaultMeasuredBioAssayCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
DefaultMeasuredBioAssayCriterion() - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.DefaultMeasuredBioAssayCriterion
 
DefaultOJBUtils - Class in gov.nih.nci.common.persistence.ojb
 
DefaultOJBUtils() - Constructor for class gov.nih.nci.common.persistence.ojb.DefaultOJBUtils
 
DefaultSearchCriteriaHandler - Class in gov.nih.nci.common.persistence
 
DefaultSearchCriteriaHandler() - Constructor for class gov.nih.nci.common.persistence.DefaultSearchCriteriaHandler
 
defaultSecureSession() - Static method in class gov.nih.nci.common.search.session.SecureSessionFactory
 
defaultSecureSessionManager() - Static method in class gov.nih.nci.common.search.session.SecureSessionManagerFactory
 
defaultSecurityManager() - Static method in class gov.nih.nci.common.persistence.SecurityManagerFactory
 
defaultValue - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
DOCUMENT ME
defaultValueId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
The internal ID of the associated defaultValue object.
defectType - Variable in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
DOCUMENT ME
defectType - Variable in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
DOCUMENT ME
defectTypeId - Variable in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
The internal ID of the associated defectType object.
defectTypeId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
The internal ID of the associated defectType object.
delete(Object) - Method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
deltaX - Variable in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Deviation from the y coordinate of this feature's position.
DELTAX_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.deltaX.
deltaY - Variable in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Deviation from the y coordinate of this feature's position.
DELTAY_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.deltaY.
DerivedBioAssay - Interface in gov.nih.nci.mageom.domain.BioAssay
A BioAssay that is created by the Transformation BioEvent from one or more MeasuredBioAssays or DerivedBioAssays.
DerivedBioAssayByBioSourceIdentifierQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
DerivedBioAssayByBioSourceIdentifierQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByBioSourceIdentifierQuery
 
DerivedBioAssayByBioSourceNameQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
DerivedBioAssayByBioSourceNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByBioSourceNameQuery
 
DerivedBioAssayByExperimentIdQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
DerivedBioAssayByExperimentIdQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByExperimentIdQuery
 
DerivedBioAssayByExperimentNameQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
DerivedBioAssayByExperimentNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByExperimentNameQuery
 
derivedBioAssayData - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
DOCUMENT ME
DerivedBioAssayData - Interface in gov.nih.nci.mageom.domain.BioAssayData
The output of a transformation event.
derivedBioAssayDataCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
The count of DerivedBioAssayData objects.
DERIVEDBIOASSAYDATAID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DerivedBioAssayData.id.
DerivedBioAssayDataImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
The output of a transformation event.
DerivedBioAssayDataImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
Default constructor
DerivedBioAssayDataSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for DerivedBioAssayData objects.
DerivedBioAssayDataSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for DerivedBioAssayData objects.
DerivedBioAssayDataSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.DerivedBioAssayDataSearchCriteriaImpl
 
derivedBioAssayDataTarget - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
DOCUMENT ME
DerivedBioAssayImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
A BioAssay that is created by the Transformation BioEvent from one or more MeasuredBioAssays or DerivedBioAssays.
DerivedBioAssayImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Default constructor
derivedBioAssayMap - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
DOCUMENT ME
derivedBioAssayMapCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
The count of BioAssayMap objects.
DerivedBioAssaySearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for DerivedBioAssay objects.
DerivedBioAssaySearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay.enhanced
Use to search for gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay types
DerivedBioAssaySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.enhanced.impl
 
DerivedBioAssaySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.DerivedBioAssaySearchCriteriaImpl
 
DerivedBioAssaySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for DerivedBioAssay objects.
DerivedBioAssaySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
 
DerivedBioAssaySearchCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple marker/base criterion POJO.
DerivedBioAssaySearchCriterion() - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioAssaySearchCriterion
 
DerivedBioSourceIdentifierCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
DerivedBioSourceIdentifierCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioSourceIdentifierCriterion
 
DerivedBioSourceNameCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
DerivedBioSourceNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioSourceNameCriterion
 
DerivedExperimentIdCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
DerivedExperimentIdCriterion(Long[]) - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedExperimentIdCriterion
 
DerivedExperimentNameCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
DerivedExperimentNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedExperimentNameCriterion
 
DerivedSignal - Interface in gov.nih.nci.mageom.domain.QuantitationType
A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements.
DerivedSignalImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements.
DerivedSignalImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
Default constructor
DerivedSignalSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for DerivedSignal objects.
DerivedSignalSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for DerivedSignal objects.
DerivedSignalSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.DerivedSignalSearchCriteriaImpl
 
Describable - Interface in gov.nih.nci.mageom.domain
Abstract class that allows subclasses to inherit the association to Description, for detailed annotations such as Ontology entries and Database references, the association to Audit, for tracking changes, and the association to Security for indicating permissions.
DescribableImpl - Class in gov.nih.nci.mageom.domain.impl
Abstract class that allows subclasses to inherit the association to Description, for detailed annotations such as Ontology entries and Database references, the association to Audit, for tracking changes, and the association to Security for indicating permissions.
DescribableImpl() - Constructor for class gov.nih.nci.mageom.domain.impl.DescribableImpl
Default constructor
DescribableSearchCriteria - Interface in gov.nih.nci.mageom.search
Represents a query for Describable objects.
DescribableSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.impl
Represents a query for Describable objects.
DescribableSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
 
Description - Interface in gov.nih.nci.mageom.domain.Description
A free text description of an object.
description - Variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
The description of the meaning for this entry.
DESCRIPTION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.description.
DescriptionImpl - Class in gov.nih.nci.mageom.domain.Description.impl
A free text description of an object.
DescriptionImpl() - Constructor for class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Default constructor
descriptions - Variable in class gov.nih.nci.mageom.domain.impl.DescribableImpl
DOCUMENT ME
descriptionsCount - Variable in class gov.nih.nci.mageom.domain.impl.DescribableImpl
The count of Description objects.
DescriptionSearchCriteria - Interface in gov.nih.nci.mageom.search.Description
Represents a query for Description objects.
DescriptionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Description.impl
Represents a query for Description objects.
DescriptionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
designElement - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
DOCUMENT ME
DesignElement - Interface in gov.nih.nci.mageom.domain.DesignElement
An element of an array.
DesignElementDimension - Interface in gov.nih.nci.mageom.domain.BioAssayData
An ordered list of designElements.
designElementDimension - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
DOCUMENT ME
designElementDimension - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
DOCUMENT ME
designElementDimensionId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
The internal ID of the associated designElementDimension object.
designElementDimensionId - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
The internal ID of the associated designElementDimension object.
DesignElementDimensionImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
An ordered list of designElements.
DesignElementDimensionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
Default constructor
DesignElementDimensionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for DesignElementDimension objects.
DesignElementDimensionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for DesignElementDimension objects.
DesignElementDimensionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl
 
DesignElementGroup - Interface in gov.nih.nci.mageom.domain.ArrayDesign
The DesignElementGroup holds information on either features, reporters, or compositeSequences, particularly that information that is common between all of the DesignElements contained.
DesignElementGroupImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
The DesignElementGroup holds information on either features, reporters, or compositeSequences, particularly that information that is common between all of the DesignElements contained.
DesignElementGroupImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
Default constructor
DesignElementGroupSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for DesignElementGroup objects.
DesignElementGroupSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for DesignElementGroup objects.
DesignElementGroupSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.DesignElementGroupSearchCriteriaImpl
 
designElementId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
The internal ID of the associated designElement object.
DESIGNELEMENTID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.DesignElement.id.
DesignElementImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
An element of an array.
DesignElementImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
Default constructor
DesignElementMap - Interface in gov.nih.nci.mageom.domain.BioAssayData
A DesignElementMap is the description of how source DesignElements are transformed into a target DesignElement.
DesignElementMapImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
A DesignElementMap is the description of how source DesignElements are transformed into a target DesignElement.
DesignElementMapImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
Default constructor
DesignElementMapping - Interface in gov.nih.nci.mageom.domain.BioAssayData
Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.
designElementMapping - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
DOCUMENT ME
designElementMappingId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
The internal ID of the associated designElementMapping object.
DesignElementMappingImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.
DesignElementMappingImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
Default constructor
DesignElementMappingSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for DesignElementMapping objects.
DesignElementMappingSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for DesignElementMapping objects.
DesignElementMappingSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
 
designElementMaps - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
DOCUMENT ME
designElementMapsCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
The count of DesignElementMap objects.
DesignElementMapSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for DesignElementMap objects.
DesignElementMapSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for DesignElementMap objects.
DesignElementMapSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMapSearchCriteriaImpl
 
DESIGNELEMENTMAPSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DesignElementMap.id.
DesignElementSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for DesignElement objects.
DesignElementSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for DesignElement objects.
DesignElementSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.DesignElementSearchCriteriaImpl
 
designProviders - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
DOCUMENT ME
designProvidersCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
The count of Contact objects.
DESIGNPROVIDERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
direct(String) - Method in class gov.nih.nci.common.persistence.DefaultSearchCriteriaHandler
 
direct(String) - Method in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy
 
direct(String) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
direct(String) - Method in interface gov.nih.nci.common.search.Directable
 
direct(String) - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
direct(String) - Method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
Directable - Interface in gov.nih.nci.common.search
Represents a Searchable object which can be directed at more than one search location.
distanceUnit - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
DOCUMENT ME
distanceUnit - Variable in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
DOCUMENT ME
distanceUnit - Variable in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
DOCUMENT ME
distanceUnit - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
DOCUMENT ME
distanceUnit - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
DOCUMENT ME
distanceUnit - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
DOCUMENT ME
distanceUnit - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
DOCUMENT ME
distanceUnit - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
DOCUMENT ME
DistanceUnit - Interface in gov.nih.nci.mageom.domain.Measurement
Distance
distanceUnitId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
The internal ID of the associated distanceUnit object.
distanceUnitId - Variable in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
The internal ID of the associated distanceUnit object.
distanceUnitId - Variable in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
The internal ID of the associated distanceUnit object.
distanceUnitId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
The internal ID of the associated distanceUnit object.
distanceUnitId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
The internal ID of the associated distanceUnit object.
distanceUnitId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
The internal ID of the associated distanceUnit object.
distanceUnitId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
The internal ID of the associated distanceUnit object.
distanceUnitId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
The internal ID of the associated distanceUnit object.
DISTANCEUNITID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.id.
DistanceUnitImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
Distance
DistanceUnitImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
Default constructor
DistanceUnitSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for DistanceUnit objects.
DistanceUnitSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for DistanceUnit objects.
DistanceUnitSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
 
DOMWriter - Class in gov.nih.nci.mageom.util
A sample DOM writer.
DOMWriter(String, boolean, String) - Constructor for class gov.nih.nci.mageom.util.DOMWriter
 
DOMWriter(boolean) - Constructor for class gov.nih.nci.mageom.util.DOMWriter
Default constructor.
DOMWriter(boolean, String) - Constructor for class gov.nih.nci.mageom.util.DOMWriter
 
doSimpleInsert(SearchCriteria, String, String, String, Object) - Static method in class gov.nih.nci.mageom.search.MAGESCUtils
 
Double2FloatConversion - Class in gov.nih.nci.common.persistence.conversions
 
Double2FloatConversion() - Constructor for class gov.nih.nci.common.persistence.conversions.Double2FloatConversion
 

E

editor - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
EDITOR_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.editor.
elem2String(Node) - Static method in class gov.nih.nci.mageom.util.XMLUtility
elem2String()
email - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
DOCUMENT ME
EMAIL_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.email.
EMPTY - Static variable in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
EMPTY_LONG_ARRAY - Static variable in class gov.nih.nci.common.util.ArrayUtils
 
EMPTY_LONG_COLLECTION - Static variable in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
end() - Method in interface gov.nih.nci.common.search.session.SecureSession
Invalidates the session.
end() - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
end - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
The location of the base, for nucleotides, that the SeqFeature ends.
END_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.end.
endSession(SearchSession) - Method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
endSession(SecureSession) - Method in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
endSession(SecureSession) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
endSession(SecureSession) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemote
 
endSession(SecureSession) - Method in interface gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemoteIF
 
endSession(SecureSession) - Method in interface gov.nih.nci.common.search.session.SecureSessionManager
 
endSession(SecureSession) - Method in class gov.nih.nci.common.search.session.SecureSessionManagerImpl
 
EnhancedMAGEOMSearchCriteria - Class in gov.nih.nci.mageom.search.enhanced.impl
Marker/Base class for Enhanced Search Criteria API.
EnhancedMAGEOMSearchCriteria() - Constructor for class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
 
EnhancedQueryRunner - Class in gov.nih.nci.common.persistence.enhanced
 
EnhancedQueryRunner() - Constructor for class gov.nih.nci.common.persistence.enhanced.EnhancedQueryRunner
 
enhancedSearchCriteria - Variable in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
 
EnhancedSearchCriteria - Interface in gov.nih.nci.mageom.search
Common interface that all Enhanced Search API criteria types will implement
EnhancedSearchCriteriaFactory - Class in gov.nih.nci.mageom.search
Factory for creating EnhancedSearchCriteria
EnhancedSearchCriteriaFactory() - Constructor for class gov.nih.nci.mageom.search.EnhancedSearchCriteriaFactory
 
EnhancedSearchCriterion - Interface in gov.nih.nci.mageom.search.enhanced
Base interface to represent Criterion for the Enhanced Search extensions.
EQUAL_TO - Static variable in class gov.nih.nci.common.query.ConditionalEnum
 
equals(Object) - Method in class gov.nih.nci.common.query.BooleanOperationEnum
 
equals(Object) - Method in class gov.nih.nci.common.query.ConditionalEnum
 
Error - Interface in gov.nih.nci.mageom.domain.QuantitationType
Error measurement of a quantitation.
ErrorImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
Error measurement of a quantitation.
ErrorImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
Default constructor
ErrorSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for Error objects.
ErrorSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for Error objects.
ErrorSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.ErrorSearchCriteriaImpl
 
escapeApostrophes(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Escapes apostrophies.
escapeApostrophes(Collection) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
ESCriteriaQuery - Interface in gov.nih.nci.common.persistence.enhanced
 
ESCriterionQuery - Interface in gov.nih.nci.common.persistence.enhanced
 
ESQuery - Interface in gov.nih.nci.common.persistence.enhanced
 
ESQueryFactory - Class in gov.nih.nci.common.persistence.enhanced
 
execute(EnhancedSearchCriteria) - Method in class gov.nih.nci.common.persistence.enhanced.EnhancedQueryRunner
 
ExpectedValue - Interface in gov.nih.nci.mageom.domain.QuantitationType
Indication of what value is expected of the associated standard quantitation type.
ExpectedValueImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
Indication of what value is expected of the associated standard quantitation type.
ExpectedValueImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
Default constructor
ExpectedValueSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for ExpectedValue objects.
ExpectedValueSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for ExpectedValue objects.
ExpectedValueSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.ExpectedValueSearchCriteriaImpl
 
Experiment - Interface in gov.nih.nci.mageom.domain.Experiment
The Experiment is the collection of all the BioAssays that are related by the ExperimentDesign.
ExperimentalFactor - Interface in gov.nih.nci.mageom.domain.Experiment
ExperimentFactors are the dependent variables of an experiment (e.g.
experimentalFactor - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
DOCUMENT ME
experimentalFactorId - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
The internal ID of the associated experimentalFactor object.
EXPERIMENTALFACTORID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor.id.
ExperimentalFactorImpl - Class in gov.nih.nci.mageom.domain.Experiment.impl
ExperimentFactors are the dependent variables of an experiment (e.g.
ExperimentalFactorImpl() - Constructor for class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Default constructor
experimentalFactors - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
DOCUMENT ME
experimentalFactorsCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
The count of ExperimentalFactor objects.
ExperimentalFactorSearchCriteria - Interface in gov.nih.nci.mageom.search.Experiment
Represents a query for ExperimentalFactor objects.
ExperimentalFactorSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Experiment.impl
Represents a query for ExperimentalFactor objects.
ExperimentalFactorSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Experiment.impl.ExperimentalFactorSearchCriteriaImpl
 
ExperimentByChipPlatformTypeQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
 
ExperimentByChipPlatformTypeQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByChipPlatformTypeQuery
 
ExperimentByDesignElementIdentiferQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
 
ExperimentByDesignElementIdentiferQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementIdentiferQuery
 
ExperimentByDesignElementNameQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
 
ExperimentByDesignElementNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementNameQuery
 
ExperimentByDesignElementQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
 
ExperimentByDesignElementQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementQuery
 
ExperimentByExperimentNameQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
 
ExperimentByExperimentNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByExperimentNameQuery
 
ExperimentByExperimentNameQuery(ExperimentExperimentNameCriterion) - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByExperimentNameQuery
 
ExperimentByInvestigatorNameQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
 
ExperimentByInvestigatorNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByInvestigatorNameQuery
 
ExperimentByOrganismNameQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
Used to find all Experiment(s) with BioMaterial(s) with characteristics, OntologyEntry(s) with a category of value 'Organism' OR BioMaterial(s) with descriptions.annotations with a category of value 'species'
ExperimentByOrganismNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
ExperimentByPubMedIdQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
 
ExperimentByPubMedIdQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByPubMedIdQuery
 
ExperimentByTissueTypeQuery - Class in gov.nih.nci.common.persistence.enhanced.Experiment
Used to find all Experiment(s) with BioMaterial(s) with characteristics, OntologyEntry(s) with a category of value 'OrganismPart'
ExperimentByTissueTypeQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
ExperimentChipPlatformTypeCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentChipPlatformTypeCriterion(String) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentChipPlatformTypeCriterion
 
ExperimentChipPlatformTypeCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentChipPlatformTypeCriterion
 
ExperimentDesign - Interface in gov.nih.nci.mageom.domain.Experiment
The ExperimentDesign is the description and collection of ExperimentalFactors and the hierarchy of BioAssays to which they pertain.
ExperimentDesignElementIdentifierCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentDesignElementIdentifierCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentDesignElementIdentifierCriterion
 
ExperimentDesignElementNameCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentDesignElementNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentDesignElementNameCriterion
 
ExperimentDesignImpl - Class in gov.nih.nci.mageom.domain.Experiment.impl
The ExperimentDesign is the description and collection of ExperimentalFactors and the hierarchy of BioAssays to which they pertain.
ExperimentDesignImpl() - Constructor for class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Default constructor
experimentDesigns - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
DOCUMENT ME
experimentDesignsCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
The count of ExperimentDesign objects.
ExperimentDesignSearchCriteria - Interface in gov.nih.nci.mageom.search.Experiment
Represents a query for ExperimentDesign objects.
ExperimentDesignSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Experiment.impl
Represents a query for ExperimentDesign objects.
ExperimentDesignSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
 
ExperimentExperimentNameCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentExperimentNameCriterion(String) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentExperimentNameCriterion
 
ExperimentFileBioSourceIdentifierCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentFileBioSourceIdentifierCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileBioSourceIdentifierCriterion
 
ExperimentFileBioSourceNameCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentFileBioSourceNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileBioSourceNameCriterion
 
ExperimentFileExperimentIdCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentFileExperimentIdCriterion(Long[]) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileExperimentIdCriterion
 
ExperimentFileExperimentNameCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentFileExperimentNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileExperimentNameCriterion
 
ExperimentFileSearchCriteria - Interface in gov.nih.nci.mageom.search.Experiment.enhanced
NOT FULLY IMPLEMENTED Use to search for gov.nih.nci.mageom.domain.Experiment.Experiment types
ExperimentFileSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Experiment.enhanced.impl
Represents a query for ExperimentFileSummary objects.
ExperimentFileSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentFileSearchCriteriaImpl
 
ExperimentFileSearchCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Base/Marker class for all Experiment File enhanced search criterion.
ExperimentFileSearchCriterion() - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSearchCriterion
 
ExperimentFileSummary - Interface in gov.nih.nci.mageom.search.Experiment.enhanced
NOT FULLY IMPLEMENTED Contains aggregated information to identify an Experiment and one of its data files.
ExperimentImpl - Class in gov.nih.nci.mageom.domain.Experiment.impl
The Experiment is the collection of all the BioAssays that are related by the ExperimentDesign.
ExperimentImpl() - Constructor for class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Default constructor
ExperimentInvestigatorNameSearchCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentInvestigatorNameSearchCriterion(NameCriterion) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentInvestigatorNameSearchCriterion
 
ExperimentInvestigatorNameSearchCriterion(NameCriterion[]) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentInvestigatorNameSearchCriterion
 
ExperimentOrganismNameSearchCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentOrganismNameSearchCriterion(String) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentOrganismNameSearchCriterion
 
ExperimentProvider - Class in gov.nih.nci.mageom.persistence.ojb.mn
 
ExperimentProvider() - Constructor for class gov.nih.nci.mageom.persistence.ojb.mn.ExperimentProvider
 
ExperimentPubMedIdSearchCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentPubMedIdSearchCriterion(String) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentPubMedIdSearchCriterion
 
ExperimentSearchCriteria - Interface in gov.nih.nci.mageom.search.Experiment.enhanced
Use to search for gov.nih.nci.mageom.domain.Experiment.Experiment types
ExperimentSearchCriteria - Interface in gov.nih.nci.mageom.search.Experiment
Represents a query for Experiment objects.
ExperimentSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Experiment.enhanced.impl
Represents a query for Experiment objects.
ExperimentSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
ExperimentSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Experiment.impl
Represents a query for Experiment objects.
ExperimentSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
ExperimentSearchCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Base/Marker class for all Experiment enhanced search criterion.
ExperimentSearchCriterion() - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriterion
 
ExperimentTissueTypeCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO.
ExperimentTissueTypeCriterion(String) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentTissueTypeCriterion
 
exportedFromDB - Variable in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Name of the database, if applicable, that the object was exported from.
EXPORTEDFROMDB_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportedFromDB.
exportedFromServer - Variable in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
The originating server for the object, a network address or common name.
EXPORTEDFROMSERVER_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportedFromServer.
exportID - Variable in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
The identifier of the object at the originating source.
EXPORTID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportID.
exportName - Variable in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
The name of the object at the originating source.
EXPORTNAME_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportName.
extend() - Method in interface gov.nih.nci.common.search.session.SecureSession
Extends the current session by SecureSessionManager.DEFAULT_SESSION_LENGTH milliseconds.
extend() - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
Extendable - Interface in gov.nih.nci.mageom.domain
Abstract class that specifies for subclasses an association to NameValueTypes.
ExtendableImpl - Class in gov.nih.nci.mageom.domain.impl
Abstract class that specifies for subclasses an association to NameValueTypes.
ExtendableImpl() - Constructor for class gov.nih.nci.mageom.domain.impl.ExtendableImpl
Default constructor
ExtendableSearchCriteria - Interface in gov.nih.nci.mageom.search
Represents a query for Extendable objects.
ExtendableSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.impl
Represents a query for Extendable objects.
ExtendableSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.impl.ExtendableSearchCriteriaImpl
 
extendSession(SearchSession) - Method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
extendSession(SecureSession) - Method in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
extendSession(SecureSession) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
extendSession(SecureSession) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemote
 
extendSession(SecureSession) - Method in interface gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemoteIF
 
extendSession(SecureSession) - Method in interface gov.nih.nci.common.search.session.SecureSessionManager
 
extendSession(SecureSession) - Method in class gov.nih.nci.common.search.session.SecureSessionManagerImpl
 
externalLIMS - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
DOCUMENT ME
externalLIMSId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
The internal ID of the associated externalLIMS object.
ExternalReference - Interface in gov.nih.nci.mageom.domain.Description
A reference to the originating source for the object.
externalReference - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
DOCUMENT ME
externalReferenceId - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
The internal ID of the associated externalReference object.
ExternalReferenceImpl - Class in gov.nih.nci.mageom.domain.Description.impl
A reference to the originating source for the object.
ExternalReferenceImpl() - Constructor for class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Default constructor
ExternalReferenceSearchCriteria - Interface in gov.nih.nci.mageom.search.Description
Represents a query for ExternalReference objects.
ExternalReferenceSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Description.impl
Represents a query for ExternalReference objects.
ExternalReferenceSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 

F

FactorValue - Interface in gov.nih.nci.mageom.domain.Experiment
The value for a ExperimentalFactor
FactorValueImpl - Class in gov.nih.nci.mageom.domain.Experiment.impl
The value for a ExperimentalFactor
FactorValueImpl() - Constructor for class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
Default constructor
factorValues - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
DOCUMENT ME
factorValuesCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
The count of FactorValue objects.
FactorValueSearchCriteria - Interface in gov.nih.nci.mageom.search.Experiment
Represents a query for FactorValue objects.
FactorValueSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Experiment.impl
Represents a query for FactorValue objects.
FactorValueSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
 
Failed - Interface in gov.nih.nci.mageom.domain.QuantitationType
Values associated with this QuantitationType indicate a failure of some kind for a particular DesignElement for a BioAssay.
FailedImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
Values associated with this QuantitationType indicate a failure of some kind for a particular DesignElement for a BioAssay.
FailedImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
Default constructor
FailedSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for Failed objects.
FailedSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for Failed objects.
FailedSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.FailedSearchCriteriaImpl
 
failTypes - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
DOCUMENT ME
failTypesCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
The count of OntologyEntry objects.
fax - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
DOCUMENT ME
FAX_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.fax.
feature - Variable in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
DOCUMENT ME
feature - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
DOCUMENT ME
Feature - Interface in gov.nih.nci.mageom.domain.DesignElement
An intended position on an array.
feature - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
DOCUMENT ME
FeatureDefect - Interface in gov.nih.nci.mageom.domain.Array
Stores the defect information for a feature.
FeatureDefectImpl - Class in gov.nih.nci.mageom.domain.Array.impl
Stores the defect information for a feature.
FeatureDefectImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
Default constructor
featureDefects - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
DOCUMENT ME
featureDefectsCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
The count of FeatureDefect objects.
FeatureDefectSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for FeatureDefect objects.
FeatureDefectSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for FeatureDefect objects.
FeatureDefectSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
 
FeatureDimension - Interface in gov.nih.nci.mageom.domain.BioAssayData
Specialized DesignElementDimension to hold Features.
FeatureDimensionImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
Specialized DesignElementDimension to hold Features.
FeatureDimensionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
Default constructor
FeatureDimensionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for FeatureDimension objects.
FeatureDimensionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for FeatureDimension objects.
FeatureDimensionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
 
FeatureExtraction - Interface in gov.nih.nci.mageom.domain.BioAssay
The process by which data is extracted from an image producing a measuredBioAssayData and a measuredBioAssay.
featureExtraction - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
DOCUMENT ME
featureExtractionId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
The internal ID of the associated featureExtraction object.
FeatureExtractionImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
The process by which data is extracted from an image producing a measuredBioAssayData and a measuredBioAssay.
FeatureExtractionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
Default constructor
FeatureExtractionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for FeatureExtraction objects.
FeatureExtractionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for FeatureExtraction objects.
FeatureExtractionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
 
FeatureGroup - Interface in gov.nih.nci.mageom.domain.ArrayDesign
A collection of like features.
featureGroup - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
DOCUMENT ME
featureGroupId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
The internal ID of the associated featureGroup object.
FEATUREGROUPID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.id.
FeatureGroupImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
A collection of like features.
FeatureGroupImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Default constructor
featureGroups - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
DOCUMENT ME
featureGroupsCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
The count of FeatureGroup objects.
FeatureGroupSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for FeatureGroup objects.
FeatureGroupSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for FeatureGroup objects.
FeatureGroupSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
featureHeight - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
The height of the feature.
FEATUREHEIGHT_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureHeight.
featureId - Variable in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
The internal ID of the associated feature object.
featureId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
The internal ID of the associated feature object.
featureId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
The internal ID of the associated feature object.
FEATUREID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id.
FEATUREID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id.
FeatureImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
An intended position on an array.
FeatureImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Default constructor
FeatureInformation - Interface in gov.nih.nci.mageom.domain.DesignElement
As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter.
FeatureInformationImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter.
FeatureInformationImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
Default constructor
FeatureInformationSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for FeatureInformation objects.
FeatureInformationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for FeatureInformation objects.
FeatureInformationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.FeatureInformationSearchCriteriaImpl
 
featureInformationSources - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
DOCUMENT ME
featureInformationSourcesCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
The count of FeatureInformation objects.
featureLength - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
The length of the feature.
FEATURELENGTH_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureLength.
featureLIMSs - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
DOCUMENT ME
featureLIMSsCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
The count of ManufactureLIMS objects.
FeatureLocation - Interface in gov.nih.nci.mageom.domain.DesignElement
Specifies where a feature is located relative to a grid.
featureLocation - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
DOCUMENT ME
featureLocationId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
The internal ID of the associated featureLocation object.
FeatureLocationImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
Specifies where a feature is located relative to a grid.
FeatureLocationImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
Default constructor
FeatureLocationSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for FeatureLocation objects.
FeatureLocationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for FeatureLocation objects.
FeatureLocationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
FeatureReporterMap - Interface in gov.nih.nci.mageom.domain.DesignElement
A FeatureReporterMap is the description of how source features are transformed into a target reporter.
FeatureReporterMapImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
A FeatureReporterMap is the description of how source features are transformed into a target reporter.
FeatureReporterMapImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
Default constructor
featureReporterMaps - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
DOCUMENT ME
featureReporterMapsCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
The count of FeatureReporterMap objects.
FeatureReporterMapSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for FeatureReporterMap objects.
FeatureReporterMapSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for FeatureReporterMap objects.
FeatureReporterMapSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
 
features - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
DOCUMENT ME
featuresCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
The count of Feature objects.
FeatureSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for Feature objects.
FeatureSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for Feature objects.
FeatureSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
featureShape - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
DOCUMENT ME
featureShapeId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
The internal ID of the associated featureShape object.
featureWidth - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
The width of the feature.
FEATUREWIDTH_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureWidth.
FetchPath - Class in gov.nih.nci.common.query
 
FetchPath(String) - Constructor for class gov.nih.nci.common.query.FetchPath
 
fetchPath - Variable in class gov.nih.nci.common.query.FetchPath
 
Fiducial - Interface in gov.nih.nci.mageom.domain.Array
A marking on the surface of the array that can be used to identify the array's origin, the coordinates of which are the fiducial's centroid.
FiducialImpl - Class in gov.nih.nci.mageom.domain.Array.impl
A marking on the surface of the array that can be used to identify the array's origin, the coordinates of which are the fiducial's centroid.
FiducialImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
Default constructor
fiducials - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
DOCUMENT ME
fiducialsCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
The count of Fiducial objects.
FiducialSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for Fiducial objects.
FiducialSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for Fiducial objects.
FiducialSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.FiducialSearchCriteriaImpl
 
fiducialType - Variable in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
DOCUMENT ME
fiducialTypeId - Variable in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
The internal ID of the associated fiducialType object.
filter(String, SecuredElementItf[]) - Method in class gov.nih.nci.common.persistence.SecurityFilter
 
findAllBioSamplesFromBioSourcesWithCharacteristicsCategoryMatchingOrganismOrWithOntologyEntryOfCategorySpecies() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllBioSamplesFromBioSourcesWithCharacteristicsCategoryMatchingOrganismPart() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
findAllBioSamplesHelper(PersistenceBroker, Collection<Long>, Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.CommonQueryHelper
 
findAllBioSamplesWithCharacteristicsCategoryMatchingOrganism() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllBioSamplesWithCharacteristicsCategoryMatchingOrganismPart() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
findAllBioSamplesWithOntologyEntryOfCategorySpecies() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllBioSourceByIdentifier() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByBioSourceIdentifierQuery
 
findAllBioSourceByIdentifier() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByBioSourceIdentifierQuery
 
findAllBioSourceByName() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByBioSourceNameQuery
 
findAllBioSourceByName() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByBioSourceNameQuery
 
findAllBioSourcesWithCharacteristicsCategoryMatchingOrganism() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllBioSourcesWithCharacteristicsCategoryMatchingOrganismPart() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
findAllBioSourcesWithOntologyEntryOfCategorySpecies() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllDesignElements(String[], String, Class) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementQuery
 
findAllDesignElementsQuery(String[], String, Class) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementQuery
 
findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByChipPlatformTypeQuery
 
findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementIdentiferQuery
 
findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementNameQuery
 
findAllExperiments(String[], String) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementQuery
 
findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByInvestigatorNameQuery
 
findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByPubMedIdQuery
 
findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
findAllLabeledExtractsFromBioMaterialsFound() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllLabeledExtractsFromBioMaterialsFound() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
findAllLabeledExtractsFromBioSamples(Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllLabeledExtractsFromBioSamples(Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
findAllLabeledExtractsWithCharacteristicsCategoryMatchingOrganism() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllLabeledExtractsWithCharacteristicsCategoryMatchingOrganismPart() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
findAllLabeledExtractsWithOntologyEntryOfCategorySpecies() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllOrganizationByName() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByChipPlatformTypeQuery
 
findAllPersons() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByInvestigatorNameQuery
 
findAllPhysicalBioAssays() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
findAllPhysicalBioAssays() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
findAllPhysicalBioAssaysHelper(PersistenceBroker, Collection, Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.CommonQueryHelper
 
findMethod(Class, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
firstName - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
DOCUMENT ME
FIRSTNAME_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.firstName.
format - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
DOCUMENT ME
formatId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
The internal ID of the associated format object.

G

Gb4ValueCriterion - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Simple criterion POJO.
Gb4ValueCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.Gb4ValueCriterion
 
getAccession() - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Returns the value of this DatabaseEntry object's accession attribute.
getAccession() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
getAccession() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.accession
getAccession() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
getAccessions() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's accessions attribute.
getAccessions() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getAccessionsCount() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Returns the count of all DatabaseEntry associated with this BibliographicReference object.
getAccessionVersion() - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Returns the value of this DatabaseEntry object's accessionVersion attribute.
getAccessionVersion() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
getAccessionVersion() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.accessionVersion
getAccessionVersion() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
getAction() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Audit
Returns the value of this Audit object's action attribute.
getAction() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
 
getAction() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
getAction() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Returns the value of this Treatment object's action attribute.
getAction() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.action
getAction() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
getActionMeasurement() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
getActionMeasurement() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Returns the value of this Treatment object's actionMeasurement attribute.
getActivityDate() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
getActivityDate() - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Returns the value of this ProtocolApplication object's activityDate attribute.
getActivityDate() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
getActivityDate() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ProtocolApplication.activityDate
getAddress() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Returns the value of this Contact object's address attribute.
getAddress() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
getAddress() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.address
getAddress() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
getAdjustments() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufactureDeviation
Returns the value of this ArrayManufactureDeviation object's adjustments attribute.
getAdjustments() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
 
getAdjustmentsCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Returns the count of all ZoneDefect associated with this ArrayManufactureDeviation object.
getAffiliation() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
getAffiliation() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Person
Returns the value of this Person object's affiliation attribute.
getAffiliationId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
getAffiliationId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id
getAnalysisResults() - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Returns the value of this Experiment object's analysisResults attribute.
getAnalysisResults() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
getAnalysisResultsCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns the count of all BioAssayDataCluster associated with this Experiment object.
getAnalysisResultsId() - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster.id
getAnalysisResultsId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
getAnnotations() - Method in interface gov.nih.nci.mageom.domain.Description.Description
Returns the value of this Description object's annotations attribute.
getAnnotations() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
getAnnotations() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor
Returns the value of this ExperimentalFactor object's annotations attribute.
getAnnotations() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
 
getAnnotationsCount() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Returns the count of all OntologyEntry associated with this Description object.
getAnnotationsCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Returns the count of all OntologyEntry associated with this ExperimentalFactor object.
getArray() - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayCreation
Returns the value of this BioAssayCreation object's array attribute.
getArray() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
 
getArrayDesign() - Method in interface gov.nih.nci.mageom.domain.Array.Array
Returns the value of this Array object's arrayDesign attribute.
getArrayDesign() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
getArrayDesignId() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getArrayDesignId() - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.id
getArrayDesignId() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
getArrayDesignId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummary
 
getArrayDesignId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
getArrayDesignName() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getArrayDesignName() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummary
 
getArrayDesignName() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
getArrayGroup() - Method in interface gov.nih.nci.mageom.domain.Array.Array
Returns the value of this Array object's arrayGroup attribute.
getArrayGroup() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
getArrayGroupId() - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.id
getArrayGroupId() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
getArrayIdentifier() - Method in interface gov.nih.nci.mageom.domain.Array.Array
Returns the value of this Array object's arrayIdentifier attribute.
getArrayIdentifier() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
getArrayIdentifier() - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayIdentifier
getArrayIdentifier() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
getArrayManufactureDeviations() - Method in interface gov.nih.nci.mageom.domain.Array.Array
Returns the value of this Array object's arrayManufactureDeviations attribute.
getArrayManufactureDeviations() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
getArrayManufactureDeviationsCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Returns the count of all ArrayManufactureDeviation associated with this Array object.
getArrayManufacturers() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Returns the value of this ArrayManufacture object's arrayManufacturers attribute.
getArrayManufacturers() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
getArrayManufacturersCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns the count of all Contact associated with this ArrayManufacture object.
getArrayManufacturersId() - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getArrayManufacturersId() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
getArrays() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's arrays attribute.
getArrays() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Returns the value of this ArrayManufacture object's arrays attribute.
getArrays() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getArrays() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
getArraysCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Returns the count of all Array associated with this ArrayGroup object.
getArraysCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns the count of all Array associated with this ArrayManufacture object.
getArraySpacingX() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's arraySpacingX attribute.
getArraySpacingX() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getArraySpacingX() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.arraySpacingX
getArraySpacingX() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
getArraySpacingY() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's arraySpacingY attribute.
getArraySpacingY() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getArraySpacingY() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.arraySpacingY
getArraySpacingY() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
getArrayXOrigin() - Method in interface gov.nih.nci.mageom.domain.Array.Array
Returns the value of this Array object's arrayXOrigin attribute.
getArrayXOrigin() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
getArrayXOrigin() - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayXOrigin
getArrayXOrigin() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
getArrayYOrigin() - Method in interface gov.nih.nci.mageom.domain.Array.Array
Returns the value of this Array object's arrayYOrigin attribute.
getArrayYOrigin() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
getArrayYOrigin() - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayYOrigin
getArrayYOrigin() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
getAscending() - Method in class gov.nih.nci.common.query.OrderByField
 
getAssociatedBeanName(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getAssociationClassName(String, String) - Method in class gov.nih.nci.common.persistence.ojb.DefaultOJBUtils
 
getAssociationClassName(String, String) - Method in interface gov.nih.nci.common.persistence.ojb.OJBUtils
 
getAssociationClassName(String, String) - Method in class gov.nih.nci.mageom.persistence.ojb.MAGEOJBUtils
 
getAssociationCriterion() - Method in interface gov.nih.nci.common.query.CriterionGroup
 
getAssociationCriterion() - Method in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
getAssociations() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
getAssociations() - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Returns the value of this OntologyEntry object's associations attribute.
getAssociationsCount() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Returns the count of all OntologyEntry associated with this OntologyEntry object.
getAuditTrail() - Method in interface gov.nih.nci.mageom.domain.Describable
Returns the value of this Describable object's auditTrail attribute.
getAuditTrail() - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
 
getAuditTrailCount() - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Returns the count of all Audit associated with this Describable object.
getAuthors() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's authors attribute.
getAuthors() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getAuthors() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.authors
getAuthors() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getBarcode() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's barcode attribute.
getBarcode() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getBarcode() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.barcode
getBarcode() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
getBasis() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
 
getBasis() - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeature
Returns the value of this SeqFeature object's basis attribute.
getBasis() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
 
getBasis() - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeature.basis
getBeanClassName() - Method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
getBeanClassName(String) - Static method in class gov.nih.nci.mageom.search.MAGESCUtils
 
getBeanClassName(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getBeanName() - Method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
getBeanName(String) - Static method in class gov.nih.nci.mageom.search.MAGESCUtils
 
getBeanName(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getBeanNameIgnoreCase(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getBeanPackageName(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getBibliographicReferences() - Method in interface gov.nih.nci.mageom.domain.Description.Description
Returns the value of this Description object's bibliographicReferences attribute.
getBibliographicReferences() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
getBibliographicReferencesCount() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Returns the count of all BibliographicReference associated with this Description object.
getBioAssay() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDatum
Returns the value of this BioAssayDatum object's bioAssay attribute.
getBioAssay() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
getBioAssayCreation() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
 
getBioAssayCreation() - Method in interface gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay
Returns the value of this PhysicalBioAssay object's bioAssayCreation attribute.
getBioAssayData() - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Returns the value of this Experiment object's bioAssayData attribute.
getBioAssayData() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
getBioAssayDataCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns the count of all BioAssayData associated with this Experiment object.
getBioAssayDataId() - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
getBioAssayDataId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
getBioAssayDataSources() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
getBioAssayDataSources() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Returns the value of this Transformation object's bioAssayDataSources attribute.
getBioAssayDataSourcesCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Returns the count of all BioAssayData associated with this Transformation object.
getBioAssayDataSourcesId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
 
getBioAssayDataSourcesId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
getBioAssayDimension() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Returns the value of this BioAssayData object's bioAssayDimension attribute.
getBioAssayDimension() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
getBioAssayDimension() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
 
getBioAssayDimension() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeContents
Returns the value of this NodeContents object's bioAssayDimension attribute.
getBioAssayDimensionId() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
getBioAssayFactorValues() - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssay
Returns the value of this BioAssay object's bioAssayFactorValues attribute.
getBioAssayFactorValues() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
 
getBioAssayFactorValuesCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Returns the count of all FactorValue associated with this BioAssay object.
getBioAssayId() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
getBioAssayId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
getBioAssayId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
getBioAssayMapping() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
getBioAssayMapping() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Returns the value of this Transformation object's bioAssayMapping attribute.
getBioAssayMaps() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayMapping
Returns the value of this BioAssayMapping object's bioAssayMaps attribute.
getBioAssayMaps() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
 
getBioAssayMapsCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
Returns the count of all BioAssayMap associated with this BioAssayMapping object.
getBioAssayMapsId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap.id
getBioAssayMapsId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
 
getBioAssayMapTarget() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap
Returns the value of this BioAssayMap object's bioAssayMapTarget attribute.
getBioAssayMapTarget() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
 
getBioAssayMapTargetId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay.id
getBioAssayMapTargetId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
getBioAssays() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDimension
Returns the value of this BioAssayDimension object's bioAssays attribute.
getBioAssays() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
 
getBioAssays() - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Returns the value of this Experiment object's bioAssays attribute.
getBioAssays() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
getBioAssaysCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
Returns the count of all BioAssay associated with this BioAssayDimension object.
getBioAssaysCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns the count of all BioAssay associated with this Experiment object.
getBioAssaysId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
getBioAssaysId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
 
getBioAssaysId() - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
getBioAssaysId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
getBioAssayTreatments() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
 
getBioAssayTreatments() - Method in interface gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay
Returns the value of this PhysicalBioAssay object's bioAssayTreatments attribute.
getBioAssayTreatmentsCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Returns the count of all BioAssayTreatment associated with this PhysicalBioAssay object.
getBioAssayTupleData() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioDataTuples
Returns the value of this BioDataTuples object's bioAssayTupleData attribute.
getBioAssayTupleData() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
 
getBioAssayTupleDataCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
Returns the count of all BioAssayDatum associated with this BioDataTuples object.
getBioDataValues() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Returns the value of this BioAssayData object's bioDataValues attribute.
getBioDataValues() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
getBiologicalCharacteristics() - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeSequence
Returns the value of this CompositeSequence object's biologicalCharacteristics attribute.
getBiologicalCharacteristics() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
 
getBiologicalCharacteristicsCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Returns the count of all BioSequence associated with this CompositeSequence object.
getBiologicalCharacteristicsId() - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id
getBiologicalCharacteristicsId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
 
getBioMaterial() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
getBioMaterial() - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMS
Returns the value of this ManufactureLIMS object's bioMaterial attribute.
getBioMaterial() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterialMeasurement
Returns the value of this BioMaterialMeasurement object's bioMaterial attribute.
getBioMaterial() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
 
getBioMaterialId() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
getBioMaterialId() - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id
getBioMaterialId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id
getBioMaterialId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
 
getBioMaterialPlateCol() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
 
getBioMaterialPlateCol() - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial
Returns the value of this ManufactureLIMSBiomaterial object's bioMaterialPlateCol attribute.
getBioMaterialPlateCol() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
getBioMaterialPlateCol() - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateCol
getBioMaterialPlateIdentifier() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
 
getBioMaterialPlateIdentifier() - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial
Returns the value of this ManufactureLIMSBiomaterial object's bioMaterialPlateIdentifier attribute.
getBioMaterialPlateIdentifier() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
getBioMaterialPlateIdentifier() - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateIdentifier
getBioMaterialPlateRow() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
 
getBioMaterialPlateRow() - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial
Returns the value of this ManufactureLIMSBiomaterial object's bioMaterialPlateRow attribute.
getBioMaterialPlateRow() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
getBioMaterialPlateRow() - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateRow
getBooleanOperation() - Method in interface gov.nih.nci.common.query.CriterionGroup
 
getBooleanOperation() - Method in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
getBroker() - Method in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
getBroker() - Method in class gov.nih.nci.common.persistence.enhanced.EnhancedQueryRunner
 
getCaseInsensitive() - Method in interface gov.nih.nci.common.query.Criterion
 
getCaseInsensitive() - Method in class gov.nih.nci.common.query.impl.CriterionImpl
 
getCategory() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
getCategory() - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Returns the value of this OntologyEntry object's category attribute.
getCategory() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor
Returns the value of this ExperimentalFactor object's category attribute.
getCategory() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
 
getCategory() - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
getCategory() - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.category
getChannel() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getChannel() - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Returns the value of this QuantitationType object's channel attribute.
getChannelId() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getChannelId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
getChannelId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id
getChannels() - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssay
Returns the value of this BioAssay object's channels attribute.
getChannels() - Method in interface gov.nih.nci.mageom.domain.BioAssay.Image
Returns the value of this Image object's channels attribute.
getChannels() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
 
getChannels() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
 
getChannelsCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Returns the count of all Channel associated with this BioAssay object.
getChannelsCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Returns the count of all Channel associated with this Image object.
getChannelsId() - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id
getChannelsId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
 
getCharacteristics() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterial
Returns the value of this BioMaterial object's characteristics attribute.
getCharacteristics() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
getCharacteristicsCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Returns the count of all OntologyEntry associated with this BioMaterial object.
getChromosomeName() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getChromosomeName() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getChromosomeName() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getChromosomeValue() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getChromosomeValue() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getChromosomeValue() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getChromosomeValues() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ChromosomeValueCriterion
 
getClass(String) - Method in class gov.nih.nci.mageom.util.MAGEDescriminatorConverter
 
getClusterBioAssayData() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster
Returns the value of this BioAssayDataCluster object's clusterBioAssayData attribute.
getClusterBioAssayData() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
 
getClusterBioAssayDataId() - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
getClusterBioAssayDataId() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
 
getCollectionByQuery(Query) - Method in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
getCollectionByQuery(Class, Query) - Method in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
getColumn() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
getColumn() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Returns the value of this Zone object's column attribute.
getColumn() - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureLocation
Returns the value of this FeatureLocation object's column attribute.
getColumn() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
 
getColumn() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
getColumn() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.column
getColumn() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.column
getColumn() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
getComponentCompounds() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Compound
Returns the value of this Compound object's componentCompounds attribute.
getComponentCompounds() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
getComponentCompoundsCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Returns the count of all CompoundMeasurement associated with this Compound object.
getComposite() - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositePosition
Returns the value of this CompositePosition object's composite attribute.
getComposite() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
 
getCompositeCompositeMaps() - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeSequence
Returns the value of this CompositeSequence object's compositeCompositeMaps attribute.
getCompositeCompositeMaps() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
 
getCompositeCompositeMapsCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Returns the count of all CompositeCompositeMap associated with this CompositeSequence object.
getCompositeGroups() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Returns the value of this ArrayDesign object's compositeGroups attribute.
getCompositeGroups() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
getCompositeGroupsCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns the count of all CompositeGroup associated with this ArrayDesign object.
getCompositeGroupsId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.CompositeGroup.id
getCompositeGroupsId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
getCompositeId() - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
getCompositeId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
 
getCompositePositionSources() - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeCompositeMap
Returns the value of this CompositeCompositeMap object's compositePositionSources attribute.
getCompositePositionSources() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
 
getCompositePositionSourcesCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
Returns the count of all CompositePosition associated with this CompositeCompositeMap object.
getCompositeSequence() - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeCompositeMap
Returns the value of this CompositeCompositeMap object's compositeSequence attribute.
getCompositeSequence() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
 
getCompositeSequence() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
 
getCompositeSequence() - Method in interface gov.nih.nci.mageom.domain.DesignElement.ReporterCompositeMap
Returns the value of this ReporterCompositeMap object's compositeSequence attribute.
getCompositeSequenceId() - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
getCompositeSequenceId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
 
getCompositeSequenceId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
 
getCompositeSequenceId() - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
getCompositeSequences() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.CompositeGroup
Returns the value of this CompositeGroup object's compositeSequences attribute.
getCompositeSequences() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
 
getCompositeSequences() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.CompositeSequenceDimension
Returns the value of this CompositeSequenceDimension object's compositeSequences attribute.
getCompositeSequences() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
 
getCompositeSequencesCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
Returns the count of all CompositeSequence associated with this CompositeGroup object.
getCompositeSequencesCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
Returns the count of all CompositeSequence associated with this CompositeSequenceDimension object.
getCompositeSequencesId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
getCompositeSequencesId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
 
getCompositeSequencesId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
getCompositeSequencesId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
 
getCompound() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.CompoundMeasurement
Returns the value of this CompoundMeasurement object's compound attribute.
getCompound() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
 
getCompoundId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
getCompoundId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
 
getCompoundIndices() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Compound
Returns the value of this Compound object's compoundIndices attribute.
getCompoundIndices() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
getCompoundIndicesCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Returns the count of all OntologyEntry associated with this Compound object.
getCompoundMeasurements() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
getCompoundMeasurements() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Returns the value of this Treatment object's compoundMeasurements attribute.
getCompoundMeasurementsCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Returns the count of all CompoundMeasurement associated with this Treatment object.
getConditional() - Method in interface gov.nih.nci.common.query.Criterion
 
getConditional() - Method in class gov.nih.nci.common.query.impl.CriterionImpl
 
getConfidenceIndicators() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getConfidenceIndicators() - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Returns the value of this QuantitationType object's confidenceIndicators attribute.
getConfidenceIndicatorsCount() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Returns the count of all ConfidenceIndicator associated with this QuantitationType object.
getConnection(PersistenceBroker) - Method in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
getContacts() - Method in interface gov.nih.nci.mageom.domain.Description.Database
Returns the value of this Database object's contacts attribute.
getContacts() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
 
getContactsCount() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Returns the count of all Contact associated with this Database object.
getContactsId() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getContactsId() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
getContainedFeatures() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.FeatureDimension
Returns the value of this FeatureDimension object's containedFeatures attribute.
getContainedFeatures() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
 
getContainedFeaturesCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
Returns the count of all Feature associated with this FeatureDimension object.
getContainedFeaturesId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
getContainedFeaturesId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
 
getControlFeatures() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Returns the value of this Feature object's controlFeatures attribute.
getControlFeatures() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
getControlFeaturesCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Returns the count of all Feature associated with this Feature object.
getControlFeaturesId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
getControlFeaturesId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
getControlledFeatures() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Returns the value of this Feature object's controlledFeatures attribute.
getControlledFeatures() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
getControlledFeaturesCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Returns the count of all Feature associated with this Feature object.
getControlledFeaturesId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
getControlledFeaturesId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
getControlType() - Method in interface gov.nih.nci.mageom.domain.DesignElement.DesignElement
Returns the value of this DesignElement object's controlType attribute.
getControlType() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
 
getCoordinate() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
 
getCoordinate() - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation
Returns the value of this SeqFeatureLocation object's coordinate attribute.
getCriteria() - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
 
getCriteria() - Method in interface gov.nih.nci.mageom.search.EnhancedSearchCriteria
 
getCriterion() - Method in interface gov.nih.nci.common.query.CriterionGroup
 
getCriterion() - Method in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
getCriterionGroup() - Method in class gov.nih.nci.common.query.impl.QueryImpl
 
getCriterionGroup() - Method in interface gov.nih.nci.common.query.Query
 
getCube() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioDataCube
Returns the value of this BioDataCube object's cube attribute.
getCube() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
getCubeReader() - Method in class gov.nih.nci.mageom.util.cubereader.CubeReaderFactory
 
getDatabase() - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Returns the value of this DatabaseEntry object's database attribute.
getDatabase() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
getDatabaseId() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.id
getDatabaseId() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
getDatabaseReferences() - Method in interface gov.nih.nci.mageom.domain.Description.Description
Returns the value of this Description object's databaseReferences attribute.
getDatabaseReferences() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
getDatabaseReferencesCount() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Returns the count of all DatabaseEntry associated with this Description object.
getDataType() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
getDataType() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Returns the value of this NodeValue object's dataType attribute.
getDataType() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
 
getDataType() - Method in interface gov.nih.nci.mageom.domain.Protocol.Parameter
Returns the value of this Parameter object's dataType attribute.
getDataType() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getDataType() - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Returns the value of this QuantitationType object's dataType attribute.
getDataTypeId() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getDate() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Audit
Returns the value of this Audit object's date attribute.
getDate() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
 
getDate() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.date
getDate() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
getDefaultServerURL() - Method in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy
 
getDefaultValue() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
 
getDefaultValue() - Method in interface gov.nih.nci.mageom.domain.Protocol.Parameter
Returns the value of this Parameter object's defaultValue attribute.
getDefectType() - Method in interface gov.nih.nci.mageom.domain.Array.FeatureDefect
Returns the value of this FeatureDefect object's defectType attribute.
getDefectType() - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
 
getDefectType() - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
 
getDefectType() - Method in interface gov.nih.nci.mageom.domain.Array.ZoneDefect
Returns the value of this ZoneDefect object's defectType attribute.
getDeltaX() - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
 
getDeltaX() - Method in interface gov.nih.nci.mageom.domain.Array.PositionDelta
Returns the value of this PositionDelta object's deltaX attribute.
getDeltaX() - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
getDeltaX() - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.deltaX
getDeltaY() - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
 
getDeltaY() - Method in interface gov.nih.nci.mageom.domain.Array.PositionDelta
Returns the value of this PositionDelta object's deltaY attribute.
getDeltaY() - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
getDeltaY() - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.deltaY
getDerivedBioAssayData() - Method in interface gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay
Returns the value of this DerivedBioAssay object's derivedBioAssayData attribute.
getDerivedBioAssayData() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
 
getDerivedBioAssayDataCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Returns the count of all DerivedBioAssayData associated with this DerivedBioAssay object.
getDerivedBioAssayDataId() - Method in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DerivedBioAssayData.id
getDerivedBioAssayDataId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
 
getDerivedBioAssayDataTarget() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
getDerivedBioAssayDataTarget() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Returns the value of this Transformation object's derivedBioAssayDataTarget attribute.
getDerivedBioAssayMap() - Method in interface gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay
Returns the value of this DerivedBioAssay object's derivedBioAssayMap attribute.
getDerivedBioAssayMap() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
 
getDerivedBioAssayMapCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Returns the count of all BioAssayMap associated with this DerivedBioAssay object.
getDescriminator(Class) - Method in class gov.nih.nci.mageom.util.MAGEDescriminatorConverter
 
getDescription() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
getDescription() - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Returns the value of this OntologyEntry object's description attribute.
getDescription() - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
getDescription() - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.description
getDescriptions() - Method in interface gov.nih.nci.mageom.domain.Describable
Returns the value of this Describable object's descriptions attribute.
getDescriptions() - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
 
getDescriptionsCount() - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Returns the count of all Description associated with this Describable object.
getDesignElement() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDatum
Returns the value of this BioAssayDatum object's designElement attribute.
getDesignElement() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
getDesignElementConcreteClass() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getDesignElementConcreteClass() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getDesignElementConcreteClass() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getDesignElementDimension() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Returns the value of this BioAssayData object's designElementDimension attribute.
getDesignElementDimension() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
getDesignElementDimension() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
 
getDesignElementDimension() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeContents
Returns the value of this NodeContents object's designElementDimension attribute.
getDesignElementDimensionId() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
getDesignElementGroupId() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getDesignElementGroupId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getDesignElementGroupId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getDesignElementId() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
getDesignElementId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.DesignElement.id
getDesignElementId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
getDesignElementMapping() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
getDesignElementMapping() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Returns the value of this Transformation object's designElementMapping attribute.
getDesignElementMaps() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.DesignElementMapping
Returns the value of this DesignElementMapping object's designElementMaps attribute.
getDesignElementMaps() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
 
getDesignElementMapsCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
Returns the count of all DesignElementMap associated with this DesignElementMapping object.
getDesignElementMapsId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DesignElementMap.id
getDesignElementMapsId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
 
getDesignProviders() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Returns the value of this ArrayDesign object's designProviders attribute.
getDesignProviders() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
getDesignProvidersCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns the count of all Contact associated with this ArrayDesign object.
getDesignProvidersId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getDesignProvidersId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
getDistanceUnit() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's distanceUnit attribute.
getDistanceUnit() - Method in interface gov.nih.nci.mageom.domain.Array.Fiducial
Returns the value of this Fiducial object's distanceUnit attribute.
getDistanceUnit() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getDistanceUnit() - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
 
getDistanceUnit() - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
 
getDistanceUnit() - Method in interface gov.nih.nci.mageom.domain.Array.PositionDelta
Returns the value of this PositionDelta object's distanceUnit attribute.
getDistanceUnit() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Returns the value of this FeatureGroup object's distanceUnit attribute.
getDistanceUnit() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
getDistanceUnit() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
getDistanceUnit() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
getDistanceUnit() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
getDistanceUnit() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Returns the value of this Zone object's distanceUnit attribute.
getDistanceUnit() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Returns the value of this ZoneGroup object's distanceUnit attribute.
getDistanceUnit() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Returns the value of this ZoneLayout object's distanceUnit attribute.
getDistanceUnit() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
 
getDistanceUnit() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Position
Returns the value of this Position object's distanceUnit attribute.
getDistanceUnitId() - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
getDistanceUnitId() - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.id
getEditor() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's editor attribute.
getEditor() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getEditor() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.editor
getEditor() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getEmail() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Returns the value of this Contact object's email attribute.
getEmail() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
getEmail() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.email
getEmail() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
getEnd() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
 
getEnd() - Method in interface gov.nih.nci.mageom.domain.BioSequence.SequencePosition
Returns the value of this SequencePosition object's end attribute.
getEnd() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
getEnd() - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.end
getExperimentalFactor() - Method in interface gov.nih.nci.mageom.domain.Experiment.FactorValue
Returns the value of this FactorValue object's experimentalFactor attribute.
getExperimentalFactor() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
 
getExperimentalFactorId() - Method in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor.id
getExperimentalFactorId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
 
getExperimentalFactors() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Returns the value of this ExperimentDesign object's experimentalFactors attribute.
getExperimentalFactors() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
getExperimentalFactorsCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Returns the count of all ExperimentalFactor associated with this ExperimentDesign object.
getExperimentDesigns() - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Returns the value of this Experiment object's experimentDesigns attribute.
getExperimentDesigns() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
getExperimentDesignsCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns the count of all ExperimentDesign associated with this Experiment object.
getExperimentId() - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSummary
 
getExperimentName() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentExperimentNameCriterion
 
getExperimentName() - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSummary
 
getExportedFromDB() - Method in interface gov.nih.nci.mageom.domain.Description.ExternalReference
Returns the value of this ExternalReference object's exportedFromDB attribute.
getExportedFromDB() - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
getExportedFromDB() - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportedFromDB
getExportedFromDB() - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
getExportedFromServer() - Method in interface gov.nih.nci.mageom.domain.Description.ExternalReference
Returns the value of this ExternalReference object's exportedFromServer attribute.
getExportedFromServer() - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
getExportedFromServer() - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportedFromServer
getExportedFromServer() - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
getExportID() - Method in interface gov.nih.nci.mageom.domain.Description.ExternalReference
Returns the value of this ExternalReference object's exportID attribute.
getExportID() - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
getExportID() - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportID
getExportID() - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
getExportName() - Method in interface gov.nih.nci.mageom.domain.Description.ExternalReference
Returns the value of this ExternalReference object's exportName attribute.
getExportName() - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
getExportName() - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportName
getExportName() - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
getExternalLIMS() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Compound
Returns the value of this Compound object's externalLIMS attribute.
getExternalLIMS() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
getExternalReference() - Method in interface gov.nih.nci.mageom.domain.Description.Description
Returns the value of this Description object's externalReference attribute.
getExternalReference() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
getFactorValues() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor
Returns the value of this ExperimentalFactor object's factorValues attribute.
getFactorValues() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
 
getFactorValuesCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Returns the count of all FactorValue associated with this ExperimentalFactor object.
getFailTypes() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
getFailTypes() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Reporter
Returns the value of this Reporter object's failTypes attribute.
getFailTypesCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Returns the count of all OntologyEntry associated with this Reporter object.
getFax() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Returns the value of this Contact object's fax attribute.
getFax() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
getFax() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.fax
getFax() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
getFeature() - Method in interface gov.nih.nci.mageom.domain.Array.FeatureDefect
Returns the value of this FeatureDefect object's feature attribute.
getFeature() - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
 
getFeature() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
getFeature() - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMS
Returns the value of this ManufactureLIMS object's feature attribute.
getFeature() - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureInformation
Returns the value of this FeatureInformation object's feature attribute.
getFeature() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
 
getFeatureDefects() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufactureDeviation
Returns the value of this ArrayManufactureDeviation object's featureDefects attribute.
getFeatureDefects() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
 
getFeatureDefectsCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Returns the count of all FeatureDefect associated with this ArrayManufactureDeviation object.
getFeatureExtraction() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
 
getFeatureExtraction() - Method in interface gov.nih.nci.mageom.domain.BioAssay.MeasuredBioAssay
Returns the value of this MeasuredBioAssay object's featureExtraction attribute.
getFeatureGroup() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Returns the value of this Feature object's featureGroup attribute.
getFeatureGroup() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
getFeatureGroupId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.id
getFeatureGroupId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
getFeatureGroups() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Returns the value of this ArrayDesign object's featureGroups attribute.
getFeatureGroups() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
getFeatureGroupsCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns the count of all FeatureGroup associated with this ArrayDesign object.
getFeatureHeight() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Returns the value of this FeatureGroup object's featureHeight attribute.
getFeatureHeight() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
getFeatureHeight() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureHeight
getFeatureHeight() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
getFeatureId() - Method in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
getFeatureId() - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
 
getFeatureId() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
getFeatureId() - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
getFeatureInformationSources() - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureReporterMap
Returns the value of this FeatureReporterMap object's featureInformationSources attribute.
getFeatureInformationSources() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
 
getFeatureInformationSourcesCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
Returns the count of all FeatureInformation associated with this FeatureReporterMap object.
getFeatureLength() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Returns the value of this FeatureGroup object's featureLength attribute.
getFeatureLength() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
getFeatureLength() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureLength
getFeatureLength() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
getFeatureLIMSs() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Returns the value of this ArrayManufacture object's featureLIMSs attribute.
getFeatureLIMSs() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
getFeatureLIMSsCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns the count of all ManufactureLIMS associated with this ArrayManufacture object.
getFeatureLocation() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Returns the value of this Feature object's featureLocation attribute.
getFeatureLocation() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
getFeatureReporterMaps() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
getFeatureReporterMaps() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Reporter
Returns the value of this Reporter object's featureReporterMaps attribute.
getFeatureReporterMapsCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Returns the count of all FeatureReporterMap associated with this Reporter object.
getFeatures() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Returns the value of this FeatureGroup object's features attribute.
getFeatures() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
getFeaturesCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Returns the count of all Feature associated with this FeatureGroup object.
getFeatureShape() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Returns the value of this FeatureGroup object's featureShape attribute.
getFeatureShape() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
getFeatureWidth() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Returns the value of this FeatureGroup object's featureWidth attribute.
getFeatureWidth() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
getFeatureWidth() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureWidth
getFeatureWidth() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
getFetchPath() - Method in class gov.nih.nci.common.query.FetchPath
 
getFetchPath() - Method in class gov.nih.nci.common.query.impl.QueryImpl
 
getFetchPath() - Method in interface gov.nih.nci.common.query.Query
 
getFiducials() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's fiducials attribute.
getFiducials() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getFiducialsCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Returns the count of all Fiducial associated with this ArrayGroup object.
getFiducialType() - Method in interface gov.nih.nci.mageom.domain.Array.Fiducial
Returns the value of this Fiducial object's fiducialType attribute.
getFiducialType() - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
 
getFileURI() - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSummary
 
getFirstName() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
getFirstName() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Person
Returns the value of this Person object's firstName attribute.
getFirstName() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
getFirstName() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.firstName
getFirstName() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion
 
getFirstNames() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentInvestigatorNameSearchCriterion
 
getFormat() - Method in interface gov.nih.nci.mageom.domain.BioAssay.Image
Returns the value of this Image object's format attribute.
getFormat() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
 
getGb4Name() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getGb4Name() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getGb4Name() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getGb4Value() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getGb4Value() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getGb4Value() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getGb4Values() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.Gb4ValueCriterion
 
getHandler() - Method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
getHardware() - Method in interface gov.nih.nci.mageom.domain.Protocol.HardwareApplication
Returns the value of this HardwareApplication object's hardware attribute.
getHardware() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
 
getHardware() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
getHardware() - Method in interface gov.nih.nci.mageom.domain.Protocol.Software
Returns the value of this Software object's hardware attribute.
getHardwareApplications() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
getHardwareApplications() - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Returns the value of this ProtocolApplication object's hardwareApplications attribute.
getHardwareApplicationsCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Returns the count of all HardwareApplication associated with this ProtocolApplication object.
getHardwareId() - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
getHardwareId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
getHardwareId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
getHardwareId() - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
getHardwareManufacturers() - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Returns the value of this Hardware object's hardwareManufacturers attribute.
getHardwareManufacturers() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
getHardwareManufacturersCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Returns the count of all Contact associated with this Hardware object.
getHardwareManufacturersId() - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getHardwareManufacturersId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
getHardwares() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
getHardwares() - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Returns the value of this Protocol object's hardwares attribute.
getHardwaresCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Returns the count of all Hardware associated with this Protocol object.
getHardwaresId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
getHardwaresId() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
getHTTPQueryURL(String, Object, String, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getId() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getId() - Method in class gov.nih.nci.mageom.domain.impl.MAGEOMObject
 
getId() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureDeviationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.FiducialSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureDeviationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.FiducialSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.DesignElementGroupSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.SecurityBean
 
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.DesignElementGroupSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayCreationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.HybridizationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageAcquisitionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayCreationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.HybridizationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageAcquisitionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.PhysicalBioAssaySearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssay.PhysicalBioAssaySearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDataSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataCubeSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataTuplesSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataValuesSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.DerivedBioAssayDataSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementDimensionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMapSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDataSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataCubeSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataTuplesSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataValuesSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DerivedBioAssayDataSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMapSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.MeasuredBioAssayDataSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.MeasuredBioAssayDataSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioEvent.BioEventSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioEvent.impl.BioEventSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioEvent.impl.MapSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioEvent.MapSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSampleSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSampleSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.TreatmentSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureLocationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.DesignElementSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureInformationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.DesignElementSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureInformationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentPubMedIdSearchCriterion
 
getId() - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentalFactorSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentalFactorSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.ExtendableSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeContentsSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeContentsSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeValueSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.impl.ExtendableSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.ConcentrationUnitSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.DistanceUnitSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.MassUnitSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.QuantityUnitSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.TemperatureUnitSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.TimeUnitSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.UnitSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Measurement.VolumeUnitSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableApplicationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableApplicationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.DerivedSignalSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.ErrorSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.ExpectedValueSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.FailedSearchCriteria
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.DerivedSignalSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ErrorSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ExpectedValueSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.FailedSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.MeasuredSignalSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.PresentAbsentSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.PValueSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.RatioSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.SpecializedQuantitationTypeSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.StandardQuantitationTypeSearchCriteriaImpl
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.MeasuredSignalSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.PresentAbsentSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.PValueSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.RatioSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.SpecializedQuantitationTypeSearchCriteria
Returns the value of the id criterion.
getId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.StandardQuantitationTypeSearchCriteria
Returns the value of the id criterion.
getIdentifier() - Method in interface gov.nih.nci.mageom.domain.Identifiable
Returns the value of this Identifiable object's identifier attribute.
getIdentifier() - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
 
getIdentifier() - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.identifier
getIdentifier() - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
getIdentifierLIMS() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
getIdentifierLIMS() - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMS
Returns the value of this ManufactureLIMS object's identifierLIMS attribute.
getIdentifiers() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioSourceIdentifierCriterion
 
getIdentifiers() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioSourceIdentifierCriterion
 
getIdentifiers() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentDesignElementIdentifierCriterion
 
getIdentifiers() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileBioSourceIdentifierCriterion
 
getIds(Collection<MAGEOMObject>) - Method in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
getIds() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignIdCriterion
 
getIds() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedExperimentIdCriterion
 
getIds() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredExperimentIdCriterion
 
getIds() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileExperimentIdCriterion
 
getIdsAsCollection(Collection<MAGEOMObject>) - Method in class gov.nih.nci.common.persistence.enhanced.BaseQueryImpl
 
getIdsForQuery(Class) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.AllBioAssayQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.AllDerivedBioAssayQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.AllMeasuredBioAssayQuery
 
getIdsForQuery(Long[], Class) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.BioAssayByExperimentIdQuery
 
getIdsForQuery(String[], Class) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.BioAssayByExperimentNameQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByExperimentIdQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByExperimentNameQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByExperimentIdQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByExperimentNameQuery
 
getIdsForQuery() - Method in interface gov.nih.nci.common.persistence.enhanced.ESCriterionQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.AllExperimentQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByChipPlatformTypeQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementIdentiferQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementNameQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByExperimentNameQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByInvestigatorNameQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByPubMedIdQuery
 
getIdsForQuery() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
getImages() - Method in interface gov.nih.nci.mageom.domain.BioAssay.ImageAcquisition
Returns the value of this ImageAcquisition object's images attribute.
getImages() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
 
getImagesCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
Returns the count of all Image associated with this ImageAcquisition object.
getImmobilizedCharacteristics() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
getImmobilizedCharacteristics() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Reporter
Returns the value of this Reporter object's immobilizedCharacteristics attribute.
getImmobilizedCharacteristicsCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Returns the count of all BioSequence associated with this Reporter object.
getImmobilizedCharacteristicsId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
 
getImmobilizedCharacteristicsId() - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id
getInformation() - Method in interface gov.nih.nci.mageom.domain.Array.Array
Returns the value of this Array object's information attribute.
getInformation() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
getInformationId() - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.id
getInformationId() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
getInstance() - Static method in class gov.nih.nci.common.persistence.enhanced.ESQueryFactory
 
getInstance() - Static method in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
getInstance() - Static method in class gov.nih.nci.mageom.util.cubereader.CubeReaderFactory
 
getIsApproximateLength() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's isApproximateLength attribute.
getIsApproximateLength() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getIsApproximateLength() - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isApproximateLength
getIsApproximateLength() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
getIsBackground() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getIsBackground() - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Returns the value of this QuantitationType object's isBackground attribute.
getIsBackground() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
getIsBackground() - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.isBackground
getIsCircular() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's isCircular attribute.
getIsCircular() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getIsCircular() - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isCircular
getIsCircular() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
getIsEditable() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getIsEditable() - Method in class gov.nih.nci.mageom.domain.impl.MAGEOMObject
 
getIsEditable() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
getIsSolvent() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Compound
Returns the value of this Compound object's isSolvent attribute.
getIsSolvent() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
getIsSolvent() - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.isSolvent
getIsSolvent() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
 
getIssue() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's issue attribute.
getIssue() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getIssue() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.issue
getIssue() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getKbPositionName() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getKbPositionName() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getKbPositionName() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getKbPositionValue() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getKbPositionValue() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getKbPositionValue() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getKbPositionValues() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.KbPositionValueCriterion
 
getKindCV() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
getKindCV() - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Returns the value of this Measurement object's kindCV attribute.
getKindCV() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
getKindCV() - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.kindCV
getLabels() - Method in interface gov.nih.nci.mageom.domain.BioAssay.Channel
Returns the value of this Channel object's labels attribute.
getLabels() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
 
getLabels() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
 
getLabels() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.LabeledExtract
Returns the value of this LabeledExtract object's labels attribute.
getLabelsCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
Returns the count of all Compound associated with this Channel object.
getLabelsCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
Returns the count of all Compound associated with this LabeledExtract object.
getLabelsId() - Method in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
getLabelsId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
 
getLabelsId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
 
getLabelsId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
getLastName() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
getLastName() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Person
Returns the value of this Person object's lastName attribute.
getLastName() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
getLastName() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.lastName
getLastName() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion
 
getLastNames() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentInvestigatorNameSearchCriterion
 
getLength() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's length attribute.
getLength() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getLength() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's length attribute.
getLength() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getLength() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.length
getLength() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
getLength() - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.length
getLength() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
getLowerRightX() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
getLowerRightX() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Returns the value of this Zone object's lowerRightX attribute.
getLowerRightX() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
getLowerRightX() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.lowerRightX
getLowerRightY() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
getLowerRightY() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Returns the value of this Zone object's lowerRightY attribute.
getLowerRightY() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
getLowerRightY() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.lowerRightY
getMageObjects(Class, Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.EnhancedQueryRunner
 
getMake() - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Returns the value of this Hardware object's make attribute.
getMake() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
getMake() - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.make
getMake() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
getManufacturingDate() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Returns the value of this ArrayManufacture object's manufacturingDate attribute.
getManufacturingDate() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
getManufacturingDate() - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.manufacturingDate
getManufacturingDate() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
getMaterialType() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterial
Returns the value of this BioMaterial object's materialType attribute.
getMaterialType() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
getMaxRecordset() - Method in interface gov.nih.nci.common.search.Searchable
 
getMaxRecordset() - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
Not supported.
getMaxResultSize() - Method in class gov.nih.nci.common.query.impl.QueryImpl
 
getMaxResultSize() - Method in interface gov.nih.nci.common.query.Query
 
getMeasuredBioAssayData() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
 
getMeasuredBioAssayData() - Method in interface gov.nih.nci.mageom.domain.BioAssay.MeasuredBioAssay
Returns the value of this MeasuredBioAssay object's measuredBioAssayData attribute.
getMeasuredBioAssayDataCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
Returns the count of all MeasuredBioAssayData associated with this MeasuredBioAssay object.
getMeasuredBioAssayDataId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
 
getMeasuredBioAssayDataId() - Method in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.MeasuredBioAssayData.id
getMeasuredBioAssayTarget() - Method in interface gov.nih.nci.mageom.domain.BioAssay.FeatureExtraction
Returns the value of this FeatureExtraction object's measuredBioAssayTarget attribute.
getMeasuredBioAssayTarget() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
 
getMeasurement() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterialMeasurement
Returns the value of this BioMaterialMeasurement object's measurement attribute.
getMeasurement() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.CompoundMeasurement
Returns the value of this CompoundMeasurement object's measurement attribute.
getMeasurement() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
 
getMeasurement() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
 
getMeasurement() - Method in interface gov.nih.nci.mageom.domain.Experiment.FactorValue
Returns the value of this FactorValue object's measurement attribute.
getMeasurement() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
 
getMembers() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
 
getMembers() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.SecurityGroup
Returns the value of this SecurityGroup object's members attribute.
getMembersCount() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
Returns the count of all Contact associated with this SecurityGroup object.
getMembersId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
 
getMembersId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getMiddleInitials() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentInvestigatorNameSearchCriterion
 
getMidInitials() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
getMidInitials() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Person
Returns the value of this Person object's midInitials attribute.
getMidInitials() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
getMidInitials() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.midInitials
getMidInitials() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion
 
getMismatchInformation() - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositePosition
Returns the value of this CompositePosition object's mismatchInformation attribute.
getMismatchInformation() - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureInformation
Returns the value of this FeatureInformation object's mismatchInformation attribute.
getMismatchInformation() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
 
getMismatchInformation() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
 
getMismatchInformation() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
 
getMismatchInformation() - Method in interface gov.nih.nci.mageom.domain.DesignElement.ReporterPosition
Returns the value of this ReporterPosition object's mismatchInformation attribute.
getMismatchInformationCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
Returns the count of all MismatchInformation associated with this CompositePosition object.
getMismatchInformationCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
Returns the count of all MismatchInformation associated with this FeatureInformation object.
getMismatchInformationCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
Returns the count of all MismatchInformation associated with this ReporterPosition object.
getModel() - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Returns the value of this Hardware object's model attribute.
getModel() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
getModel() - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.model
getModel() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
getName() - Method in interface gov.nih.nci.common.query.AssociationCriterion
 
getName() - Method in interface gov.nih.nci.common.query.Criterion
 
getName() - Method in class gov.nih.nci.common.query.FetchPath
 
getName() - Method in class gov.nih.nci.common.query.impl.AssociationCriterionImpl
 
getName() - Method in class gov.nih.nci.common.query.impl.CriterionImpl
 
getName() - Method in class gov.nih.nci.common.query.impl.QueryImpl
 
getName() - Method in class gov.nih.nci.common.query.OrderByField
 
getName() - Method in interface gov.nih.nci.common.query.Query
 
getName() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
getName() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Returns the value of this NodeValue object's name attribute.
getName() - Method in interface gov.nih.nci.mageom.domain.Identifiable
Returns the value of this Identifiable object's name attribute.
getName() - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
 
getName() - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
getName() - Method in interface gov.nih.nci.mageom.domain.NameValueType
Returns the value of this NameValueType object's name attribute.
getName() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentOrganismNameSearchCriterion
 
getName() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
 
getName() - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeValueSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue.name
getName() - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.name
getName() - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
getName() - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
getName() - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.name
getNameCriterion() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentInvestigatorNameSearchCriterion
 
getNameResolver() - Method in class gov.nih.nci.common.persistence.OJBQueryHandler
 
getNames() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignNameCriterion
 
getNames() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioSourceNameCriterion
 
getNames() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedExperimentNameCriterion
 
getNames() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioSourceNameCriterion
 
getNames() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredExperimentNameCriterion
 
getNames() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentDesignElementNameCriterion
 
getNames() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileBioSourceNameCriterion
 
getNames() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileExperimentNameCriterion
 
getNegative() - Method in interface gov.nih.nci.common.query.AssociationCriterion
 
getNegative() - Method in interface gov.nih.nci.common.query.Criterion
 
getNegative() - Method in class gov.nih.nci.common.query.impl.AssociationCriterionImpl
 
getNegative() - Method in class gov.nih.nci.common.query.impl.CriterionImpl
 
getNewSequence() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
 
getNewSequence() - Method in interface gov.nih.nci.mageom.domain.DesignElement.MismatchInformation
Returns the value of this MismatchInformation object's newSequence attribute.
getNewSequence() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
getNewSequence() - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.newSequence
getNodeContents() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
 
getNodeContents() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.Node
Returns the value of this Node object's nodeContents attribute.
getNodeContentsCount() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Returns the count of all NodeContents associated with this Node object.
getNodes() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster
Returns the value of this BioAssayDataCluster object's nodes attribute.
getNodes() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
 
getNodes() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
 
getNodes() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.Node
Returns the value of this Node object's nodes attribute.
getNodesCount() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
Returns the count of all Node associated with this BioAssayDataCluster object.
getNodesCount() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Returns the count of all Node associated with this Node object.
getNodeValue() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
 
getNodeValue() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.Node
Returns the value of this Node object's nodeValue attribute.
getNodeValueCount() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Returns the count of all NodeValue associated with this Node object.
getNormalizationDescription() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Returns the value of this ExperimentDesign object's normalizationDescription attribute.
getNormalizationDescription() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
getNumArrays() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's numArrays attribute.
getNumArrays() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getNumArrays() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.numArrays
getNumArrays() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
getNumberOfFeatures() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Returns the value of this ArrayDesign object's numberOfFeatures attribute.
getNumberOfFeatures() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
getNumberOfFeatures() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.numberOfFeatures
getNumberOfFeatures() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
getNumFeaturesPerCol() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
getNumFeaturesPerCol() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Returns the value of this ZoneLayout object's numFeaturesPerCol attribute.
getNumFeaturesPerCol() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
getNumFeaturesPerCol() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.numFeaturesPerCol
getNumFeaturesPerRow() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
getNumFeaturesPerRow() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Returns the value of this ZoneLayout object's numFeaturesPerRow attribute.
getNumFeaturesPerRow() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
getNumFeaturesPerRow() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.numFeaturesPerRow
getObject() - Method in class gov.nih.nci.mageom.util.MethodDescriptor
 
getOntologyEntries() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's ontologyEntries attribute.
getOntologyEntries() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getOntologyEntriesCount() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Returns the count of all OntologyEntry associated with this BioSequence object.
getOntologyReference() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
getOntologyReference() - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Returns the value of this OntologyEntry object's ontologyReference attribute.
getOrder() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioDataCube
Returns the value of this BioDataCube object's order attribute.
getOrder() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
getOrder() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
getOrder() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Returns the value of this Treatment object's order attribute.
getOrder() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
 
getOrder() - Method in interface gov.nih.nci.mageom.search.BioMaterial.TreatmentSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Treatment.order
getOrderBy() - Method in class gov.nih.nci.common.query.impl.QueryImpl
 
getOrderBy() - Method in interface gov.nih.nci.common.query.Query
 
getOrderBy() - Method in interface gov.nih.nci.common.search.Searchable
 
getOrderBy() - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
Not supported.
getOrientationMark() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's orientationMark attribute.
getOrientationMark() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getOrientationMark() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.orientationMark
getOrientationMark() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
getOrientationMarkPosition() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's orientationMarkPosition attribute.
getOrientationMarkPosition() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getOrientationMarkPosition() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.orientationMarkPosition
getOrientationMarkPosition() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
getOriginRelativeTo() - Method in interface gov.nih.nci.mageom.domain.Array.Array
Returns the value of this Array object's originRelativeTo attribute.
getOriginRelativeTo() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
getOriginRelativeTo() - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.originRelativeTo
getOriginRelativeTo() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
getOtherKind() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
getOtherKind() - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Returns the value of this Measurement object's otherKind attribute.
getOtherKind() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
getOtherKind() - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.otherKind
getOwner() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
 
getOwner() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Security
Returns the value of this Security object's owner attribute.
getOwnerCount() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Returns the count of all Contact associated with this Security object.
getOwnerId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
getOwnerId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getPages() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's pages attribute.
getPages() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getPages() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.pages
getPages() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getParameters() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's parameters attribute.
getParameters() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getParametersCount() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Returns the count of all OntologyEntry associated with this BibliographicReference object.
getParameterType() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
 
getParameterType() - Method in interface gov.nih.nci.mageom.domain.Protocol.ParameterValue
Returns the value of this ParameterValue object's parameterType attribute.
getParameterTypeId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
getParameterTypeId() - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameter.id
getParameterTypes() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
 
getParameterTypes() - Method in interface gov.nih.nci.mageom.domain.Protocol.Parameterizable
Returns the value of this Parameterizable object's parameterTypes attribute.
getParameterTypesCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Returns the count of all Parameter associated with this Parameterizable object.
getParameterValues() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
 
getParameterValues() - Method in interface gov.nih.nci.mageom.domain.Protocol.ParameterizableApplication
Returns the value of this ParameterizableApplication object's parameterValues attribute.
getParameterValuesCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
Returns the count of all ParameterValue associated with this ParameterizableApplication object.
getParent() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
 
getParent() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Organization
Returns the value of this Organization object's parent attribute.
getParentId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
 
getParentId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id
getPerformer() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Audit
Returns the value of this Audit object's performer attribute.
getPerformer() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
 
getPerformerId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getPerformerId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
getPerformers() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
getPerformers() - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Returns the value of this ProtocolApplication object's performers attribute.
getPerformersCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Returns the count of all Person associated with this ProtocolApplication object.
getPerformersId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
getPerformersId() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.id
getPermission(String) - Method in interface gov.nih.nci.mageom.util.UserAccess
return the permission of a given corresponding key(project), if not found , returns null
getPermissonKeys() - Method in interface gov.nih.nci.mageom.util.UserAccess
return the enumeration of permissions
getPermissons() - Method in interface gov.nih.nci.mageom.util.UserAccess
return the hashtable of permissions
getPhone() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Returns the value of this Contact object's phone attribute.
getPhone() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
getPhone() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.phone
getPhone() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
getPhysicalBioAssay() - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayTreatment
Returns the value of this BioAssayTreatment object's physicalBioAssay attribute.
getPhysicalBioAssay() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
 
getPhysicalBioAssayData() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
 
getPhysicalBioAssayData() - Method in interface gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay
Returns the value of this PhysicalBioAssay object's physicalBioAssayData attribute.
getPhysicalBioAssayDataCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Returns the count of all Image associated with this PhysicalBioAssay object.
getPhysicalBioAssayId() - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id
getPhysicalBioAssayId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
 
getPhysicalBioAssaySource() - Method in interface gov.nih.nci.mageom.domain.BioAssay.FeatureExtraction
Returns the value of this FeatureExtraction object's physicalBioAssaySource attribute.
getPhysicalBioAssaySource() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
 
getPhysicalBioAssaySourceId() - Method in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id
getPhysicalBioAssaySourceId() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
 
getPhysicalBioAssayTarget() - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayCreation
Returns the value of this BioAssayCreation object's physicalBioAssayTarget attribute.
getPhysicalBioAssayTarget() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
 
getPolymerType() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's polymerType attribute.
getPolymerType() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getPosition() - Method in interface gov.nih.nci.mageom.domain.Array.Fiducial
Returns the value of this Fiducial object's position attribute.
getPosition() - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
 
getPosition() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Returns the value of this Feature object's position attribute.
getPosition() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
getPositionDelta() - Method in interface gov.nih.nci.mageom.domain.Array.FeatureDefect
Returns the value of this FeatureDefect object's positionDelta attribute.
getPositionDelta() - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
 
getPositionDelta() - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
 
getPositionDelta() - Method in interface gov.nih.nci.mageom.domain.Array.ZoneDefect
Returns the value of this ZoneDefect object's positionDelta attribute.
getPrefetchDesignElements() - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementDimensionSearchCriteria
 
getPrefetchDesignElements() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl
 
getPrefetchQuantitationTypes() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
getPrefetchQuantitationTypes() - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
 
getProducerTransformation() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.DerivedBioAssayData
Returns the value of this DerivedBioAssayData object's producerTransformation attribute.
getProducerTransformation() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
 
getPropertySets() - Method in interface gov.nih.nci.mageom.domain.Extendable
Returns the value of this Extendable object's propertySets attribute.
getPropertySets() - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
getPropertySets() - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
getPropertySets() - Method in interface gov.nih.nci.mageom.domain.NameValueType
Returns the value of this NameValueType object's propertySets attribute.
getPropertySetsCount() - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
Returns the count of all NameValueType associated with this Extendable object.
getPropertySetsCount() - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Returns the count of all NameValueType associated with this NameValueType object.
getProtocol() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
getProtocol() - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Returns the value of this ProtocolApplication object's protocol attribute.
getProtocolApplications() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Returns the value of this ArrayManufacture object's protocolApplications attribute.
getProtocolApplications() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
getProtocolApplications() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Returns the value of this ArrayDesign object's protocolApplications attribute.
getProtocolApplications() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
getProtocolApplications() - Method in interface gov.nih.nci.mageom.domain.BioEvent.BioEvent
Returns the value of this BioEvent object's protocolApplications attribute.
getProtocolApplications() - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
 
getProtocolApplicationsCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns the count of all ProtocolApplication associated with this ArrayManufacture object.
getProtocolApplicationsCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns the count of all ProtocolApplication associated with this ArrayDesign object.
getProtocolApplicationsCount() - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
Returns the count of all ProtocolApplication associated with this BioEvent object.
getProtocolId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
getProtocolId() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.id
getProviders() - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Returns the value of this Experiment object's providers attribute.
getProviders() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
getProvidersCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns the count of all Contact associated with this Experiment object.
getProvidersId() - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getProvidersId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
getPublication() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's publication attribute.
getPublication() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getPublication() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.publication
getPublication() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getPublisher() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's publisher attribute.
getPublisher() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getPublisher() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.publisher
getPublisher() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getQuality() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
getQuality() - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMS
Returns the value of this ManufactureLIMS object's quality attribute.
getQuality() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
getQuality() - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMS.quality
getQualityControlDescription() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Returns the value of this ExperimentDesign object's qualityControlDescription attribute.
getQualityControlDescription() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
getQualityControlStatistics() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Returns the value of this ArrayManufacture object's qualityControlStatistics attribute.
getQualityControlStatistics() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
getQualityControlStatistics() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterial
Returns the value of this BioMaterial object's qualityControlStatistics attribute.
getQualityControlStatistics() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
getQualityControlStatisticsCount() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns the count of all NameValueType associated with this ArrayManufacture object.
getQualityControlStatisticsCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Returns the count of all NameValueType associated with this BioMaterial object.
getQuantitationDimension() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
 
getQuantitationDimension() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeContents
Returns the value of this NodeContents object's quantitationDimension attribute.
getQuantitationType() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDatum
Returns the value of this BioAssayDatum object's quantitationType attribute.
getQuantitationType() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
getQuantitationTypeDimension() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Returns the value of this BioAssayData object's quantitationTypeDimension attribute.
getQuantitationTypeDimension() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
getQuantitationTypeId() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
getQuantitationTypeId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
getQuantitationTypeId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
getQuantitationTypeMapping() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
getQuantitationTypeMapping() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Returns the value of this Transformation object's quantitationTypeMapping attribute.
getQuantitationTypeMaps() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
 
getQuantitationTypeMaps() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMapping
Returns the value of this QuantitationTypeMapping object's quantitationTypeMaps attribute.
getQuantitationTypeMaps() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getQuantitationTypeMaps() - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Returns the value of this QuantitationType object's quantitationTypeMaps attribute.
getQuantitationTypeMapsCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
Returns the count of all QuantitationTypeMap associated with this QuantitationTypeMapping object.
getQuantitationTypeMapsCount() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Returns the count of all QuantitationTypeMap associated with this QuantitationType object.
getQuantitationTypeMapsId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
 
getQuantitationTypeMapsId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap.id
getQuantitationTypes() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
 
getQuantitationTypes() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeDimension
Returns the value of this QuantitationTypeDimension object's quantitationTypes attribute.
getQuantitationTypesCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
Returns the count of all QuantitationType associated with this QuantitationTypeDimension object.
getQuantitationTypesId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
getQuantitationTypesId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
getQuery(EnhancedSearchCriteria) - Method in class gov.nih.nci.common.persistence.enhanced.ESQueryFactory
 
getQuery(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.ESQueryFactory
 
getQuery() - Method in interface gov.nih.nci.common.query.AssociationCriterion
 
getQuery() - Method in class gov.nih.nci.common.query.impl.AssociationCriterionImpl
 
getQueryName() - Method in class gov.nih.nci.common.query.SubClassFetchPath
 
getReciprocalRole(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getRegions() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
 
getRegions() - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeature
Returns the value of this SeqFeature object's regions attribute.
getRegionsCount() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
Returns the count of all SeqFeatureLocation associated with this SeqFeature object.
getReleaseDate() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
 
getReleaseDate() - Method in interface gov.nih.nci.mageom.domain.Protocol.SoftwareApplication
Returns the value of this SoftwareApplication object's releaseDate attribute.
getReleaseDate() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
getReleaseDate() - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.releaseDate
getReplacedLength() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
 
getReplacedLength() - Method in interface gov.nih.nci.mageom.domain.DesignElement.MismatchInformation
Returns the value of this MismatchInformation object's replacedLength attribute.
getReplacedLength() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
getReplacedLength() - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.replacedLength
getReplicateDescription() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Returns the value of this ExperimentDesign object's replicateDescription attribute.
getReplicateDescription() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
getReporter() - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureReporterMap
Returns the value of this FeatureReporterMap object's reporter attribute.
getReporter() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
 
getReporter() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
 
getReporter() - Method in interface gov.nih.nci.mageom.domain.DesignElement.ReporterPosition
Returns the value of this ReporterPosition object's reporter attribute.
getReporterCompositeMaps() - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeSequence
Returns the value of this CompositeSequence object's reporterCompositeMaps attribute.
getReporterCompositeMaps() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
 
getReporterCompositeMapsCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Returns the count of all ReporterCompositeMap associated with this CompositeSequence object.
getReporterGroups() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Returns the value of this ArrayDesign object's reporterGroups attribute.
getReporterGroups() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
getReporterGroupsCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns the count of all ReporterGroup associated with this ArrayDesign object.
getReporterGroupsId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ReporterGroup.id
getReporterGroupsId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
getReporterId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
getReporterId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
 
getReporterId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
 
getReporterId() - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
getReporterName() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getReporterName() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
getReporterName() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterSummary
 
getReporterNames() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterNameCriterion
 
getReporterPositionSources() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
 
getReporterPositionSources() - Method in interface gov.nih.nci.mageom.domain.DesignElement.ReporterCompositeMap
Returns the value of this ReporterCompositeMap object's reporterPositionSources attribute.
getReporterPositionSourcesCount() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
Returns the count of all ReporterPosition associated with this ReporterCompositeMap object.
getReporters() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
 
getReporters() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ReporterGroup
Returns the value of this ReporterGroup object's reporters attribute.
getReporters() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
 
getReporters() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.ReporterDimension
Returns the value of this ReporterDimension object's reporters attribute.
getReportersCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
Returns the count of all Reporter associated with this ReporterGroup object.
getReportersCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
Returns the count of all Reporter associated with this ReporterDimension object.
getReportersId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
 
getReportersId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
getReportersId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
 
getReportersId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
getReportersSummary() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummary
 
getReportersSummary() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
getResults() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
getResults() - Method in interface gov.nih.nci.common.persistence.enhanced.ESCriteriaQuery
 
getReturnCount() - Method in interface gov.nih.nci.common.search.Searchable
 
getReturnObjects() - Method in interface gov.nih.nci.common.search.Searchable
 
getRoles() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Returns the value of this Contact object's roles attribute.
getRoles() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
getRolesCount() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Returns the count of all OntologyEntry associated with this Contact object.
getRow() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
getRow() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Returns the value of this Zone object's row attribute.
getRow() - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureLocation
Returns the value of this FeatureLocation object's row attribute.
getRow() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
 
getRow() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
getRow() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.row
getRow() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.row
getRow() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
getScale() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
getScale() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Returns the value of this NodeValue object's scale attribute.
getScale() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getScale() - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Returns the value of this QuantitationType object's scale attribute.
getScaleId() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
getSCClassName(String) - Static method in class gov.nih.nci.mageom.search.MAGESCUtils
 
getSCClassName(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getSCInstance(String) - Static method in class gov.nih.nci.mageom.search.AbstractEnhancedSearchCriteriaFactory
 
getSCPackageName(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getSearchLocation() - Method in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy
 
getSecuredElementId() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
getSecuredElementId() - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
getSecuredElementId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.SecurityBean
 
getSecurity() - Method in interface gov.nih.nci.mageom.domain.Describable
Returns the value of this Describable object's security attribute.
getSecurity() - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
 
getSecurityGroups() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
 
getSecurityGroups() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Security
Returns the value of this Security object's securityGroups attribute.
getSecurityGroupsCount() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Returns the count of all SecurityGroup associated with this Security object.
getSecurityGroupsId() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
getSecurityGroupsId() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.SecurityGroup.id
getSecurityId() - Method in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Security.id
getSecurityId() - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
 
getSeqFeatures() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's seqFeatures attribute.
getSeqFeatures() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getSeqFeaturesCount() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Returns the count of all SeqFeature associated with this BioSequence object.
getSequence() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's sequence attribute.
getSequence() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getSequenceDatabases() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's sequenceDatabases attribute.
getSequenceDatabases() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getSequenceDatabasesCount() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Returns the count of all DatabaseEntry associated with this BioSequence object.
getSerialNumber() - Method in interface gov.nih.nci.mageom.domain.Protocol.HardwareApplication
Returns the value of this HardwareApplication object's serialNumber attribute.
getSerialNumber() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
 
getSerialNumber() - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.HardwareApplication.serialNumber
getSerialNumber() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
getSessionId() - Method in interface gov.nih.nci.common.search.session.SecureSession
Gets the internal session ID for this session.
getSessionId() - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
getSessionId() - Method in interface gov.nih.nci.common.search.session.SessionObject
 
getShortName(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
getSoftware() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
 
getSoftware() - Method in interface gov.nih.nci.mageom.domain.Protocol.SoftwareApplication
Returns the value of this SoftwareApplication object's software attribute.
getSoftwareApplications() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
getSoftwareApplications() - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Returns the value of this ProtocolApplication object's softwareApplications attribute.
getSoftwareApplicationsCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Returns the count of all SoftwareApplication associated with this ProtocolApplication object.
getSoftwareId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
getSoftwareId() - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
getSoftwareManufacturers() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
getSoftwareManufacturers() - Method in interface gov.nih.nci.mageom.domain.Protocol.Software
Returns the value of this Software object's softwareManufacturers attribute.
getSoftwareManufacturersCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Returns the count of all Contact associated with this Software object.
getSoftwareManufacturersId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
getSoftwareManufacturersId() - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getSoftwares() - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Returns the value of this Hardware object's softwares attribute.
getSoftwares() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
getSoftwares() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
getSoftwares() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
getSoftwares() - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Returns the value of this Protocol object's softwares attribute.
getSoftwares() - Method in interface gov.nih.nci.mageom.domain.Protocol.Software
Returns the value of this Software object's softwares attribute.
getSoftwaresCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Returns the count of all Software associated with this Hardware object.
getSoftwaresCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Returns the count of all Software associated with this Protocol object.
getSoftwaresCount() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Returns the count of all Software associated with this Software object.
getSoftwaresId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
getSoftwaresId() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
getSoftwaresId() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
getSoftwaresId() - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
getSourceBioAssays() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap
Returns the value of this BioAssayMap object's sourceBioAssays attribute.
getSourceBioAssays() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
 
getSourceBioAssaysCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
Returns the count of all BioAssay associated with this BioAssayMap object.
getSourceBioAssaysId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
getSourceBioAssaysId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
getSourceBioMaterialMeasurements() - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayCreation
Returns the value of this BioAssayCreation object's sourceBioMaterialMeasurements attribute.
getSourceBioMaterialMeasurements() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
 
getSourceBioMaterialMeasurements() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
getSourceBioMaterialMeasurements() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Returns the value of this Treatment object's sourceBioMaterialMeasurements attribute.
getSourceBioMaterialMeasurementsCount() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Returns the count of all BioMaterialMeasurement associated with this BioAssayCreation object.
getSourceBioMaterialMeasurementsCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Returns the count of all BioMaterialMeasurement associated with this Treatment object.
getSourceContact() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioSource
Returns the value of this BioSource object's sourceContact attribute.
getSourceContact() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
 
getSourceContactCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
Returns the count of all Contact associated with this BioSource object.
getSourceContactId() - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
getSourceContactId() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
 
getSourcesQuantitationType() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
 
getSourcesQuantitationType() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap
Returns the value of this QuantitationTypeMap object's sourcesQuantitationType attribute.
getSourcesQuantitationTypeCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
Returns the count of all QuantitationType associated with this QuantitationTypeMap object.
getSourcesQuantitationTypeId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
getSourcesQuantitationTypeId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
getSourceType() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
getSpacingBetweenCols() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
getSpacingBetweenCols() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Returns the value of this ZoneLayout object's spacingBetweenCols attribute.
getSpacingBetweenCols() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
getSpacingBetweenCols() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.spacingBetweenCols
getSpacingBetweenRows() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
getSpacingBetweenRows() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Returns the value of this ZoneLayout object's spacingBetweenRows attribute.
getSpacingBetweenRows() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
getSpacingBetweenRows() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.spacingBetweenRows
getSpacingsBetweenZonesX() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
getSpacingsBetweenZonesX() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Returns the value of this ZoneGroup object's spacingsBetweenZonesX attribute.
getSpacingsBetweenZonesX() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
getSpacingsBetweenZonesX() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.spacingsBetweenZonesX
getSpacingsBetweenZonesY() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
getSpacingsBetweenZonesY() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Returns the value of this ZoneGroup object's spacingsBetweenZonesY attribute.
getSpacingsBetweenZonesY() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
getSpacingsBetweenZonesY() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.spacingsBetweenZonesY
getSpecies() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.DesignElementGroup
Returns the value of this DesignElementGroup object's species attribute.
getSpecies() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
 
getSpecies() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's species attribute.
getSpecies() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getStart() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
 
getStart() - Method in interface gov.nih.nci.mageom.domain.BioSequence.SequencePosition
Returns the value of this SequencePosition object's start attribute.
getStart() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
getStart() - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.start
getStartAt() - Method in class gov.nih.nci.common.query.impl.QueryImpl
 
getStartAt() - Method in interface gov.nih.nci.common.query.Query
 
getStartCoord() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
 
getStartCoord() - Method in interface gov.nih.nci.mageom.domain.DesignElement.MismatchInformation
Returns the value of this MismatchInformation object's startCoord attribute.
getStartCoord() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
getStartCoord() - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.startCoord
getStartTime() - Method in interface gov.nih.nci.common.search.session.SecureSession
Gets the time in milliseconds when the session was started or the last time refresh was called.
getStartTime() - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
getStrandType() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
 
getStrandType() - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation
Returns the value of this SeqFeatureLocation object's strandType attribute.
getStrandType() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
 
getStrandType() - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureLocationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation.strandType
getSubCriterionGroup() - Method in interface gov.nih.nci.common.query.CriterionGroup
 
getSubCriterionGroup() - Method in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
getSubregions() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
 
getSubregions() - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation
Returns the value of this SeqFeatureLocation object's subregions attribute.
getSubregionsCount() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Returns the count of all SeqFeatureLocation associated with this SeqFeatureLocation object.
getSubstrateType() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's substrateType attribute.
getSubstrateType() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getSummaryStatistics() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Returns the value of this BioAssayData object's summaryStatistics attribute.
getSummaryStatistics() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
getSummaryStatisticsCount() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Returns the count of all NameValueType associated with this BioAssayData object.
getSurfaceType() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
 
getSurfaceType() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.PhysicalArrayDesign
Returns the value of this PhysicalArrayDesign object's surfaceType attribute.
getTarget() - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayTreatment
Returns the value of this BioAssayTreatment object's target attribute.
getTarget() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
 
getTargetQuantitationType() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
 
getTargetQuantitationType() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap
Returns the value of this QuantitationTypeMap object's targetQuantitationType attribute.
getTargetQuantitationType() - Method in interface gov.nih.nci.mageom.domain.QuantitationType.ConfidenceIndicator
Returns the value of this ConfidenceIndicator object's targetQuantitationType attribute.
getTargetQuantitationType() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
 
getTargetQuantitationTypeId() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
getTargetQuantitationTypeId() - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
getTargetQuantitationTypeId() - Method in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
getTargetQuantitationTypeId() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
 
getTechnologyType() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Returns the value of this FeatureGroup object's technologyType attribute.
getTechnologyType() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
getText() - Method in interface gov.nih.nci.mageom.domain.Description.Description
Returns the value of this Description object's text attribute.
getText() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
getText() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
getText() - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Returns the value of this Protocol object's text attribute.
getText() - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.text
getText() - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
getText() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
getText() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.text
getTimeToLive(SearchSession) - Method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
getTimeToLive(SecureSession) - Method in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
getTimeToLive(SecureSession) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
getTimeToLive(SecureSession) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemote
 
getTimeToLive(SecureSession) - Method in interface gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemoteIF
 
getTimeToLive() - Method in interface gov.nih.nci.common.search.session.SecureSession
Gets the time in milliseconds until this session will be invalidated.
getTimeToLive() - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
getTimeToLive(SecureSession) - Method in interface gov.nih.nci.common.search.session.SecureSessionManager
 
getTimeToLive(SecureSession) - Method in class gov.nih.nci.common.search.session.SecureSessionManagerImpl
 
getTissueType() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentTissueTypeCriterion
 
getTitle() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's title attribute.
getTitle() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getTitle() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
getTitle() - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Returns the value of this Protocol object's title attribute.
getTitle() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.title
getTitle() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getTitle() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
getTitle() - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.title
getTolerance() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Returns the value of this ArrayManufacture object's tolerance attribute.
getTolerance() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
getTolerance() - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.tolerance
getTolerance() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
getTollFreePhone() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Returns the value of this Contact object's tollFreePhone attribute.
getTollFreePhone() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
getTollFreePhone() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.tollFreePhone
getTollFreePhone() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
getTopLevelBioAssays() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Returns the value of this ExperimentDesign object's topLevelBioAssays attribute.
getTopLevelBioAssays() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
getTopLevelBioAssaysCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Returns the count of all BioAssay associated with this ExperimentDesign object.
getTopLevelBioAssaysId() - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
getTopLevelBioAssaysId() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
 
getTreatments() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterial
Returns the value of this BioMaterial object's treatments attribute.
getTreatments() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
getTreatmentsCount() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Returns the count of all Treatment associated with this BioMaterial object.
getType() - Method in interface gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay
Returns the value of this DerivedBioAssay object's type attribute.
getType() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
 
getType() - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioSample
Returns the value of this BioSample object's type attribute.
getType() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
 
getType() - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Returns the value of this BioSequence object's type attribute.
getType() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
getType() - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Returns the value of this DatabaseEntry object's type attribute.
getType() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
getType() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
getType() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Returns the value of this NodeValue object's type attribute.
getType() - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
getType() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
getType() - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Returns the value of this Measurement object's type attribute.
getType() - Method in interface gov.nih.nci.mageom.domain.NameValueType
Returns the value of this NameValueType object's type attribute.
getType() - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Returns the value of this Hardware object's type attribute.
getType() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
getType() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
getType() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
getType() - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Returns the value of this Protocol object's type attribute.
getType() - Method in interface gov.nih.nci.mageom.domain.Protocol.Software
Returns the value of this Software object's type attribute.
getType() - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
getType() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
getType() - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.type
getType() - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.type
getTypes() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.DesignElementGroup
Returns the value of this DesignElementGroup object's types attribute.
getTypes() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
 
getTypes() - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Returns the value of this ExperimentDesign object's types attribute.
getTypes() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
getTypesCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
Returns the count of all OntologyEntry associated with this DesignElementGroup object.
getTypesCount() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Returns the count of all OntologyEntry associated with this ExperimentDesign object.
getTypeValue() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentChipPlatformTypeCriterion
 
getUnit() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
getUnit() - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Returns the value of this Measurement object's unit attribute.
getUnitName() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
 
getUnitName() - Method in interface gov.nih.nci.mageom.domain.Measurement.Unit
Returns the value of this Unit object's unitName attribute.
getUnitName() - Method in class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
 
getUnitName() - Method in interface gov.nih.nci.mageom.search.Measurement.UnitSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Unit.unitName
getUnitNameCV() - Method in interface gov.nih.nci.mageom.domain.Measurement.ConcentrationUnit
Returns the value of this ConcentrationUnit object's unitNameCV attribute.
getUnitNameCV() - Method in interface gov.nih.nci.mageom.domain.Measurement.DistanceUnit
Returns the value of this DistanceUnit object's unitNameCV attribute.
getUnitNameCV() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
 
getUnitNameCV() - Method in interface gov.nih.nci.mageom.domain.Measurement.MassUnit
Returns the value of this MassUnit object's unitNameCV attribute.
getUnitNameCV() - Method in interface gov.nih.nci.mageom.domain.Measurement.QuantityUnit
Returns the value of this QuantityUnit object's unitNameCV attribute.
getUnitNameCV() - Method in interface gov.nih.nci.mageom.domain.Measurement.TemperatureUnit
Returns the value of this TemperatureUnit object's unitNameCV attribute.
getUnitNameCV() - Method in interface gov.nih.nci.mageom.domain.Measurement.TimeUnit
Returns the value of this TimeUnit object's unitNameCV attribute.
getUnitNameCV() - Method in interface gov.nih.nci.mageom.domain.Measurement.VolumeUnit
Returns the value of this VolumeUnit object's unitNameCV attribute.
getUnitNameCV() - Method in interface gov.nih.nci.mageom.search.Measurement.ConcentrationUnitSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.ConcentrationUnit.unitNameCV
getUnitNameCV() - Method in interface gov.nih.nci.mageom.search.Measurement.DistanceUnitSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.unitNameCV
getUnitNameCV() - Method in class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
 
getUnitNameCV() - Method in class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
 
getUnitNameCV() - Method in interface gov.nih.nci.mageom.search.Measurement.MassUnitSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.MassUnit.unitNameCV
getUnitNameCV() - Method in interface gov.nih.nci.mageom.search.Measurement.QuantityUnitSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.QuantityUnit.unitNameCV
getUnitNameCV() - Method in interface gov.nih.nci.mageom.search.Measurement.TemperatureUnitSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TemperatureUnit.unitNameCV
getUnitNameCV() - Method in interface gov.nih.nci.mageom.search.Measurement.TimeUnitSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TimeUnit.unitNameCV
getUnitNameCV() - Method in interface gov.nih.nci.mageom.search.Measurement.VolumeUnitSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.VolumeUnit.unitNameCV
getUpperLeftX() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
getUpperLeftX() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Returns the value of this Zone object's upperLeftX attribute.
getUpperLeftX() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
getUpperLeftX() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.upperLeftX
getUpperLeftY() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
getUpperLeftY() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Returns the value of this Zone object's upperLeftY attribute.
getUpperLeftY() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
getUpperLeftY() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.upperLeftY
getURI() - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Returns the value of this Contact object's URI attribute.
getURI() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
getURI() - Method in interface gov.nih.nci.mageom.domain.BioAssay.Image
Returns the value of this Image object's URI attribute.
getURI() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
 
getURI() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's URI attribute.
getURI() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getURI() - Method in interface gov.nih.nci.mageom.domain.Description.Database
Returns the value of this Database object's URI attribute.
getURI() - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Returns the value of this DatabaseEntry object's URI attribute.
getURI() - Method in interface gov.nih.nci.mageom.domain.Description.Description
Returns the value of this Description object's URI attribute.
getURI() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
getURI() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
 
getURI() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
getURI() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
 
getURI() - Method in interface gov.nih.nci.mageom.domain.Protocol.Parameterizable
Returns the value of this Parameterizable object's URI attribute.
getURI() - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.URI
getURI() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
getURI() - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Image.URI
getURI() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
 
getURI() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.URI
getURI() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getURI() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.URI
getURI() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.URI
getURI() - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.URI
getURI() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
getURI() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
getURI() - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
getURI() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
 
getURI() - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameterizable.URI
getUserAccess() - Method in class gov.nih.nci.mageom.util.PermissionObject
return the data permissions
getUserName(SecureSession) - Method in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
getUserName(SecureSession) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
getUserName(SecureSession) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemote
 
getUserName(SecureSession) - Method in interface gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemoteIF
 
getUserName(SecureSession) - Method in interface gov.nih.nci.common.search.session.SecureSessionManager
 
getUserName(SecureSession) - Method in class gov.nih.nci.common.search.session.SecureSessionManagerImpl
 
getValue() - Method in class gov.nih.nci.common.query.BooleanOperationEnum
 
getValue() - Method in class gov.nih.nci.common.query.ConditionalEnum
 
getValue() - Method in interface gov.nih.nci.common.query.Criterion
 
getValue() - Method in class gov.nih.nci.common.query.impl.CriterionImpl
 
getValue() - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDatum
Returns the value of this BioAssayDatum object's value attribute.
getValue() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
getValue() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
getValue() - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Returns the value of this OntologyEntry object's value attribute.
getValue() - Method in interface gov.nih.nci.mageom.domain.Experiment.FactorValue
Returns the value of this FactorValue object's value attribute.
getValue() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
 
getValue() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
getValue() - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Returns the value of this NodeValue object's value attribute.
getValue() - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
getValue() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
getValue() - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Returns the value of this Measurement object's value attribute.
getValue() - Method in interface gov.nih.nci.mageom.domain.NameValueType
Returns the value of this NameValueType object's value attribute.
getValue() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
 
getValue() - Method in interface gov.nih.nci.mageom.domain.Protocol.ParameterValue
Returns the value of this ParameterValue object's value attribute.
getValue() - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
getValue() - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.value
getValue() - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
getValue() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
getValue() - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.value
getValue() - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.value
getValue() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
getValue() - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ParameterValue.value
getVersion() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Returns the value of this ArrayDesign object's version attribute.
getVersion() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
getVersion() - Method in interface gov.nih.nci.mageom.domain.Description.Database
Returns the value of this Database object's version attribute.
getVersion() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
 
getVersion() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
 
getVersion() - Method in interface gov.nih.nci.mageom.domain.Protocol.SoftwareApplication
Returns the value of this SoftwareApplication object's version attribute.
getVersion() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.version
getVersion() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
getVersion() - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.version
getVersion() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
getVersion() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
getVersion() - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.version
getVolume() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's volume attribute.
getVolume() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getVolume() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.volume
getVolume() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getWarningType() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
getWarningType() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Reporter
Returns the value of this Reporter object's warningType attribute.
getWidth() - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Returns the value of this ArrayGroup object's width attribute.
getWidth() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
getWidth() - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.width
getWidth() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
getWriterEncoding() - Static method in class gov.nih.nci.mageom.util.DOMWriter
 
getX() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
 
getX() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Position
Returns the value of this Position object's x attribute.
getX() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
getX() - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.x
getXML(String, Hashtable) - Method in class gov.nih.nci.mageom.ui.domain.XMLDispatcher
 
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getXMLMethodDescriptors() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
getY() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
 
getY() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Position
Returns the value of this Position object's y attribute.
getY() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
getY() - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.y
getYear() - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Returns the value of this BibliographicReference object's year attribute.
getYear() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
getYear() - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.year
getYear() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
getZone() - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
 
getZone() - Method in interface gov.nih.nci.mageom.domain.Array.ZoneDefect
Returns the value of this ZoneDefect object's zone attribute.
getZone() - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Returns the value of this Feature object's zone attribute.
getZone() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
getZoneGroups() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
 
getZoneGroups() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.PhysicalArrayDesign
Returns the value of this PhysicalArrayDesign object's zoneGroups attribute.
getZoneGroupsCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
Returns the count of all ZoneGroup associated with this PhysicalArrayDesign object.
getZoneGroupsId() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
 
getZoneGroupsId() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.id
getZoneId() - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
 
getZoneId() - Method in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id
getZoneId() - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id
getZoneId() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
getZoneLayout() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
getZoneLayout() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Returns the value of this ZoneGroup object's zoneLayout attribute.
getZoneLocations() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
getZoneLocations() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Returns the value of this ZoneGroup object's zoneLocations attribute.
getZoneLocationsCount() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Returns the count of all Zone associated with this ZoneGroup object.
getZonesPerX() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
getZonesPerX() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Returns the value of this ZoneGroup object's zonesPerX attribute.
getZonesPerX() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
getZonesPerX() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.zonesPerX
getZonesPerY() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
getZonesPerY() - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Returns the value of this ZoneGroup object's zonesPerY attribute.
getZonesPerY() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
getZonesPerY() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Gets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.zonesPerY
gov.nih.nci.caarray.services.util.ojb.conversions - package gov.nih.nci.caarray.services.util.ojb.conversions
 
gov.nih.nci.common.persistence - package gov.nih.nci.common.persistence
 
gov.nih.nci.common.persistence.conversions - package gov.nih.nci.common.persistence.conversions
 
gov.nih.nci.common.persistence.enhanced - package gov.nih.nci.common.persistence.enhanced
 
gov.nih.nci.common.persistence.enhanced.ArrayDesign - package gov.nih.nci.common.persistence.enhanced.ArrayDesign
 
gov.nih.nci.common.persistence.enhanced.BioAssay - package gov.nih.nci.common.persistence.enhanced.BioAssay
 
gov.nih.nci.common.persistence.enhanced.Experiment - package gov.nih.nci.common.persistence.enhanced.Experiment
 
gov.nih.nci.common.persistence.ojb - package gov.nih.nci.common.persistence.ojb
 
gov.nih.nci.common.process - package gov.nih.nci.common.process
 
gov.nih.nci.common.query - package gov.nih.nci.common.query
 
gov.nih.nci.common.query.impl - package gov.nih.nci.common.query.impl
 
gov.nih.nci.common.remote.rmi - package gov.nih.nci.common.remote.rmi
 
gov.nih.nci.common.search - package gov.nih.nci.common.search
 
gov.nih.nci.common.search.session - package gov.nih.nci.common.search.session
 
gov.nih.nci.common.util - package gov.nih.nci.common.util
 
gov.nih.nci.mageom.domain - package gov.nih.nci.mageom.domain
 
gov.nih.nci.mageom.domain.Array - package gov.nih.nci.mageom.domain.Array
 
gov.nih.nci.mageom.domain.Array.impl - package gov.nih.nci.mageom.domain.Array.impl
 
gov.nih.nci.mageom.domain.ArrayDesign - package gov.nih.nci.mageom.domain.ArrayDesign
 
gov.nih.nci.mageom.domain.ArrayDesign.impl - package gov.nih.nci.mageom.domain.ArrayDesign.impl
 
gov.nih.nci.mageom.domain.AuditAndSecurity - package gov.nih.nci.mageom.domain.AuditAndSecurity
 
gov.nih.nci.mageom.domain.AuditAndSecurity.impl - package gov.nih.nci.mageom.domain.AuditAndSecurity.impl
 
gov.nih.nci.mageom.domain.BioAssay - package gov.nih.nci.mageom.domain.BioAssay
 
gov.nih.nci.mageom.domain.BioAssay.impl - package gov.nih.nci.mageom.domain.BioAssay.impl
 
gov.nih.nci.mageom.domain.BioAssayData - package gov.nih.nci.mageom.domain.BioAssayData
 
gov.nih.nci.mageom.domain.BioAssayData.impl - package gov.nih.nci.mageom.domain.BioAssayData.impl
 
gov.nih.nci.mageom.domain.BioEvent - package gov.nih.nci.mageom.domain.BioEvent
 
gov.nih.nci.mageom.domain.BioEvent.impl - package gov.nih.nci.mageom.domain.BioEvent.impl
 
gov.nih.nci.mageom.domain.BioMaterial - package gov.nih.nci.mageom.domain.BioMaterial
 
gov.nih.nci.mageom.domain.BioMaterial.impl - package gov.nih.nci.mageom.domain.BioMaterial.impl
 
gov.nih.nci.mageom.domain.BioSequence - package gov.nih.nci.mageom.domain.BioSequence
 
gov.nih.nci.mageom.domain.BioSequence.impl - package gov.nih.nci.mageom.domain.BioSequence.impl
 
gov.nih.nci.mageom.domain.BQS - package gov.nih.nci.mageom.domain.BQS
 
gov.nih.nci.mageom.domain.BQS.impl - package gov.nih.nci.mageom.domain.BQS.impl
 
gov.nih.nci.mageom.domain.Description - package gov.nih.nci.mageom.domain.Description
 
gov.nih.nci.mageom.domain.Description.impl - package gov.nih.nci.mageom.domain.Description.impl
 
gov.nih.nci.mageom.domain.DesignElement - package gov.nih.nci.mageom.domain.DesignElement
 
gov.nih.nci.mageom.domain.DesignElement.impl - package gov.nih.nci.mageom.domain.DesignElement.impl
 
gov.nih.nci.mageom.domain.Experiment - package gov.nih.nci.mageom.domain.Experiment
 
gov.nih.nci.mageom.domain.Experiment.impl - package gov.nih.nci.mageom.domain.Experiment.impl
 
gov.nih.nci.mageom.domain.HigherLevelAnalysis - package gov.nih.nci.mageom.domain.HigherLevelAnalysis
 
gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl - package gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl
 
gov.nih.nci.mageom.domain.impl - package gov.nih.nci.mageom.domain.impl
 
gov.nih.nci.mageom.domain.Measurement - package gov.nih.nci.mageom.domain.Measurement
 
gov.nih.nci.mageom.domain.Measurement.impl - package gov.nih.nci.mageom.domain.Measurement.impl
 
gov.nih.nci.mageom.domain.Protocol - package gov.nih.nci.mageom.domain.Protocol
 
gov.nih.nci.mageom.domain.Protocol.impl - package gov.nih.nci.mageom.domain.Protocol.impl
 
gov.nih.nci.mageom.domain.QuantitationType - package gov.nih.nci.mageom.domain.QuantitationType
 
gov.nih.nci.mageom.domain.QuantitationType.impl - package gov.nih.nci.mageom.domain.QuantitationType.impl
 
gov.nih.nci.mageom.persistence.ojb - package gov.nih.nci.mageom.persistence.ojb
 
gov.nih.nci.mageom.persistence.ojb.mn - package gov.nih.nci.mageom.persistence.ojb.mn
 
gov.nih.nci.mageom.search - package gov.nih.nci.mageom.search
 
gov.nih.nci.mageom.search.Array - package gov.nih.nci.mageom.search.Array
 
gov.nih.nci.mageom.search.Array.impl - package gov.nih.nci.mageom.search.Array.impl
 
gov.nih.nci.mageom.search.ArrayDesign - package gov.nih.nci.mageom.search.ArrayDesign
 
gov.nih.nci.mageom.search.ArrayDesign.enhanced - package gov.nih.nci.mageom.search.ArrayDesign.enhanced
 
gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl - package gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl
 
gov.nih.nci.mageom.search.ArrayDesign.impl - package gov.nih.nci.mageom.search.ArrayDesign.impl
 
gov.nih.nci.mageom.search.AuditAndSecurity - package gov.nih.nci.mageom.search.AuditAndSecurity
 
gov.nih.nci.mageom.search.AuditAndSecurity.impl - package gov.nih.nci.mageom.search.AuditAndSecurity.impl
 
gov.nih.nci.mageom.search.BioAssay - package gov.nih.nci.mageom.search.BioAssay
 
gov.nih.nci.mageom.search.BioAssay.enhanced - package gov.nih.nci.mageom.search.BioAssay.enhanced
 
gov.nih.nci.mageom.search.BioAssay.enhanced.impl - package gov.nih.nci.mageom.search.BioAssay.enhanced.impl
 
gov.nih.nci.mageom.search.BioAssay.impl - package gov.nih.nci.mageom.search.BioAssay.impl
 
gov.nih.nci.mageom.search.BioAssayData - package gov.nih.nci.mageom.search.BioAssayData
 
gov.nih.nci.mageom.search.BioAssayData.impl - package gov.nih.nci.mageom.search.BioAssayData.impl
 
gov.nih.nci.mageom.search.BioEvent - package gov.nih.nci.mageom.search.BioEvent
 
gov.nih.nci.mageom.search.BioEvent.impl - package gov.nih.nci.mageom.search.BioEvent.impl
 
gov.nih.nci.mageom.search.BioMaterial - package gov.nih.nci.mageom.search.BioMaterial
 
gov.nih.nci.mageom.search.BioMaterial.impl - package gov.nih.nci.mageom.search.BioMaterial.impl
 
gov.nih.nci.mageom.search.BioSequence - package gov.nih.nci.mageom.search.BioSequence
 
gov.nih.nci.mageom.search.BioSequence.impl - package gov.nih.nci.mageom.search.BioSequence.impl
 
gov.nih.nci.mageom.search.BQS - package gov.nih.nci.mageom.search.BQS
 
gov.nih.nci.mageom.search.BQS.impl - package gov.nih.nci.mageom.search.BQS.impl
 
gov.nih.nci.mageom.search.Description - package gov.nih.nci.mageom.search.Description
 
gov.nih.nci.mageom.search.Description.impl - package gov.nih.nci.mageom.search.Description.impl
 
gov.nih.nci.mageom.search.DesignElement - package gov.nih.nci.mageom.search.DesignElement
 
gov.nih.nci.mageom.search.DesignElement.impl - package gov.nih.nci.mageom.search.DesignElement.impl
 
gov.nih.nci.mageom.search.enhanced - package gov.nih.nci.mageom.search.enhanced
 
gov.nih.nci.mageom.search.enhanced.impl - package gov.nih.nci.mageom.search.enhanced.impl
 
gov.nih.nci.mageom.search.Experiment - package gov.nih.nci.mageom.search.Experiment
 
gov.nih.nci.mageom.search.Experiment.enhanced - package gov.nih.nci.mageom.search.Experiment.enhanced
 
gov.nih.nci.mageom.search.Experiment.enhanced.impl - package gov.nih.nci.mageom.search.Experiment.enhanced.impl
 
gov.nih.nci.mageom.search.Experiment.impl - package gov.nih.nci.mageom.search.Experiment.impl
 
gov.nih.nci.mageom.search.HigherLevelAnalysis - package gov.nih.nci.mageom.search.HigherLevelAnalysis
 
gov.nih.nci.mageom.search.HigherLevelAnalysis.impl - package gov.nih.nci.mageom.search.HigherLevelAnalysis.impl
 
gov.nih.nci.mageom.search.impl - package gov.nih.nci.mageom.search.impl
 
gov.nih.nci.mageom.search.Measurement - package gov.nih.nci.mageom.search.Measurement
 
gov.nih.nci.mageom.search.Measurement.impl - package gov.nih.nci.mageom.search.Measurement.impl
 
gov.nih.nci.mageom.search.Protocol - package gov.nih.nci.mageom.search.Protocol
 
gov.nih.nci.mageom.search.Protocol.impl - package gov.nih.nci.mageom.search.Protocol.impl
 
gov.nih.nci.mageom.search.QuantitationType - package gov.nih.nci.mageom.search.QuantitationType
 
gov.nih.nci.mageom.search.QuantitationType.impl - package gov.nih.nci.mageom.search.QuantitationType.impl
 
gov.nih.nci.mageom.ui.domain - package gov.nih.nci.mageom.ui.domain
This package encapsulates utility classes that support the MAGE HTTP and SOAP Protocols for accessing data.
gov.nih.nci.mageom.util - package gov.nih.nci.mageom.util
This package encapsulates utiltiy classes used by MAGE Domain Objects.
gov.nih.nci.mageom.util.cubereader - package gov.nih.nci.mageom.util.cubereader
 
GREATER_THAN - Static variable in class gov.nih.nci.common.query.ConditionalEnum
 
GREATER_THAN_OR_EQUAL_TO - Static variable in class gov.nih.nci.common.query.ConditionalEnum
 

H

handle(Query) - Method in class gov.nih.nci.common.persistence.OJBQueryHandler
 
handle(Query) - Method in interface gov.nih.nci.common.process.QueryHandler
 
Hardware - Interface in gov.nih.nci.mageom.domain.Protocol
Hardware represents the hardware used.
hardware - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
DOCUMENT ME
hardware - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
DOCUMENT ME
HardwareApplication - Interface in gov.nih.nci.mageom.domain.Protocol
The use of a piece of hardware with the requisite Parameters and ParameterValues.
HardwareApplicationImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
The use of a piece of hardware with the requisite Parameters and ParameterValues.
HardwareApplicationImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
Default constructor
hardwareApplications - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
DOCUMENT ME
hardwareApplicationsCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
The count of HardwareApplication objects.
HardwareApplicationSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for HardwareApplication objects.
HardwareApplicationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for HardwareApplication objects.
HardwareApplicationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
hardwareId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
The internal ID of the associated hardware object.
hardwareId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
The internal ID of the associated hardware object.
HARDWAREID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id.
HARDWAREID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id.
HardwareImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
Hardware represents the hardware used.
HardwareImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Default constructor
hardwareManufacturers - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
DOCUMENT ME
HardwareManufacturers - Class in gov.nih.nci.mageom.persistence.ojb.mn
 
HardwareManufacturers() - Constructor for class gov.nih.nci.mageom.persistence.ojb.mn.HardwareManufacturers
 
hardwareManufacturersCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
The count of Contact objects.
HARDWAREMANUFACTURERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
hardwares - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
DOCUMENT ME
hardwaresCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
The count of Hardware objects.
HardwareSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for Hardware objects.
HardwareSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for Hardware objects.
HardwareSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
HARDWARESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id.
hashCode() - Method in class gov.nih.nci.common.query.BooleanOperationEnum
 
hashCode() - Method in class gov.nih.nci.common.query.ConditionalEnum
 
hasPermission(String, String) - Method in interface gov.nih.nci.mageom.util.UserAccess
return if the given key (project), has a given premission
HTTPdecode(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Deprecated. use HTTPdecode(String s, String enc)
HTTPdecode(String, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Decodes a application/x-www-form-urlencoded string using a specific encoding scheme.
HTTPencode(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Deprecated. use HTTPencode(String s, String enc)
HTTPencode(String, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Translates a string into application/x-www-form-urlencoded format using a specific encoding scheme.
Hybridization - Interface in gov.nih.nci.mageom.domain.BioAssay
The archetypal bioAssayCreation event, whereby biomaterials are hybridized to an array.
HybridizationImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
The archetypal bioAssayCreation event, whereby biomaterials are hybridized to an array.
HybridizationImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
Default constructor
HybridizationSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for Hybridization objects.
HybridizationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for Hybridization objects.
HybridizationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.HybridizationSearchCriteriaImpl
 

I

ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayManufactureDeviationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufactureDeviation.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.FeatureDefect.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.FiducialSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.Fiducial.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMS.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ZoneDefect.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.CompositeGroup.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.DesignElementGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.DesignElementGroup.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.PhysicalArrayDesign.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ReporterGroup.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.SecurityGroup.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Security.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.BioAssayCreationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssayCreation.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssayTreatment.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.FeatureExtraction.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.HybridizationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Hybridization.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.ImageAcquisitionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.ImageAcquisition.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.ImageSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Image.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.MeasuredBioAssay.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.PhysicalBioAssaySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDataSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayDimension.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayMapping.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioDataCubeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioDataCube.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioDataTuplesSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioDataTuples.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioDataValuesSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioDataValues.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.CompositeSequenceDimension.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.DerivedBioAssayDataSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DerivedBioAssayData.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementDimensionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DesignElementDimension.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DesignElementMapping.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMapSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DesignElementMap.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.FeatureDimension.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.MeasuredBioAssayDataSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.MeasuredBioAssayData.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeDimension.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMapping.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.ReporterDimension.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.Transformation.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioEvent.BioEventSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioEvent.BioEvent.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioEvent.MapSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioEvent.Map.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterialMeasurement.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.BioSampleSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioSample.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioSource.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.CompoundMeasurement.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.LabeledExtract.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.TreatmentSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Treatment.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureLocationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeature.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Describable.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeCompositeMap.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositePosition.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.DesignElementSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.DesignElement.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureInformationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureInformation.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureReporterMap.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.ReporterCompositeMap.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.ReporterPosition.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.ExperimentalFactorSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Experiment.ExperimentDesign.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Experiment.Experiment.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Experiment.FactorValue.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ExtendableSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Extendable.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeContentsSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeContents.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.Node.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeValueSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.ConcentrationUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.ConcentrationUnit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.DistanceUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.MassUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.MassUnit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.QuantityUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.QuantityUnit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.TemperatureUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TemperatureUnit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.TimeUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TimeUnit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.UnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Unit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.VolumeUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.VolumeUnit.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.HardwareApplication.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ParameterizableApplicationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ParameterizableApplication.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ParameterizableSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameterizable.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ParameterSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameter.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ParameterValue.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ProtocolApplication.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.ConfidenceIndicator.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.DerivedSignalSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.DerivedSignal.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.ErrorSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.Error.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.ExpectedValueSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.ExpectedValue.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.FailedSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.Failed.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.MeasuredSignalSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.MeasuredSignal.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.PresentAbsentSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.PresentAbsent.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.PValueSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.PValue.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.RatioSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.Ratio.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.SpecializedQuantitationTypeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.SpecializedQuantitationType.id.
ID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.StandardQuantitationTypeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.StandardQuantitationType.id.
Identifiable - Interface in gov.nih.nci.mageom.domain
An Identifiable class is one that has an unambiguous reference within the scope.
IdentifiableImpl - Class in gov.nih.nci.mageom.domain.impl
An Identifiable class is one that has an unambiguous reference within the scope.
IdentifiableImpl() - Constructor for class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
Default constructor
IdentifiableSearchCriteria - Interface in gov.nih.nci.mageom.search
Represents a query for Identifiable objects.
IdentifiableSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.impl
Represents a query for Identifiable objects.
IdentifiableSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
identifier - Variable in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
An identifier is an unambiguous string that is unique within the scope (i.e.
IDENTIFIER_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.identifier.
identifierLIMS - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
DOCUMENT ME
identifierLIMSId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
The internal ID of the associated identifierLIMS object.
IlluminaCubeTableReader - Class in gov.nih.nci.mageom.util.cubereader
Cube reader for Illumina data.
Image - Interface in gov.nih.nci.mageom.domain.BioAssay
An image is created by an imageAcquisition event, typically by scanning the hybridized array (the PhysicalBioAssay).
ImageAcquisition - Interface in gov.nih.nci.mageom.domain.BioAssay
The process by which an image is generated (typically scanning).
ImageAcquisitionImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
The process by which an image is generated (typically scanning).
ImageAcquisitionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
Default constructor
ImageAcquisitionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for ImageAcquisition objects.
ImageAcquisitionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for ImageAcquisition objects.
ImageAcquisitionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.ImageAcquisitionSearchCriteriaImpl
 
ImageImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
An image is created by an imageAcquisition event, typically by scanning the hybridized array (the PhysicalBioAssay).
ImageImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Default constructor
images - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
DOCUMENT ME
imagesCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
The count of Image objects.
ImageSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for Image objects.
ImageSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for Image objects.
ImageSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
 
immobilizedCharacteristics - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
DOCUMENT ME
immobilizedCharacteristicsCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
The count of BioSequence objects.
IMMOBILIZEDCHARACTERISTICSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id.
information - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
DOCUMENT ME
informationId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
The internal ID of the associated information object.
INFORMATIONID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.id.
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
init() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
init() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
 
init() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
init() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
init() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
 
init() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
init() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
 
init() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
 
init() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
 
init() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
 
init() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
init() - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
 
init() - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
init() - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
 
init() - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
 
init() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
 
init() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
 
insert(Object) - Method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
insertAttributeCriterion(SearchCriteria, String, int, Object) - Static method in class gov.nih.nci.mageom.search.MAGESCUtils
 
insertAttributeCriterion(SearchCriteria, String, int, Object, boolean) - Static method in class gov.nih.nci.mageom.search.MAGESCUtils
 
internalSearch(SearchCriteria) - Method in class gov.nih.nci.common.persistence.DefaultSearchCriteriaHandler
 
invoke(String, String, Object[]) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
invoke(Object, String, Object[]) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
invokeCustomSetterMethod(SearchCriteria, Criterion, int) - Method in class gov.nih.nci.mageom.search.MAGESCUtils
 
invokeInverseFkSetterMethod(SearchCriteria, Criterion, int) - Method in class gov.nih.nci.mageom.search.MAGESCUtils
 
isApproximateLength - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
If length not positively known will be true
ISAPPROXIMATELENGTH_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isApproximateLength.
isBackground - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Indicates whether the quantitation has been measured from the background or from the feature
ISBACKGROUND_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.isBackground.
isCircular - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Indicates if the BioSequence is circular in nature.
ISCIRCULAR_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isCircular.
isEditable() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
isEditable() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.SecurityBean
 
isEmpty(Object[]) - Static method in class gov.nih.nci.common.util.ArrayUtils
 
isEmpty(Collection) - Static method in class gov.nih.nci.common.util.CollectionUtils
 
isNotEmpty(Object[]) - Static method in class gov.nih.nci.common.util.ArrayUtils
 
isNotEmpty(Collection) - Static method in class gov.nih.nci.common.util.CollectionUtils
 
isSolvent - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
A Compound may be a special case Solvent.
ISSOLVENT_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.isSolvent.
issue - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
ISSUE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.issue.
isValidJavaEncoding(String) - Static method in class gov.nih.nci.mageom.util.DOMWriter
 

J

javaToSql(Object) - Method in class gov.nih.nci.caarray.services.util.ojb.conversions.Boolean2IntFieldConversion
 
javaToSql(Object) - Method in class gov.nih.nci.caarray.services.util.ojb.conversions.Long2LongObjectFieldConversion
 
javaToSql(Object) - Method in class gov.nih.nci.common.persistence.conversions.Double2FloatConversion
 
javaToSql(Object) - Method in class gov.nih.nci.common.persistence.conversions.String2DateConversion
 
join(Object[], String, String) - Static method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
Joins the elements of the provided array into a single String containing the provided list of elements.

K

KbPositionValueCriterion - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Simple criterion POJO.
KbPositionValueCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.KbPositionValueCriterion
 
kindCV - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
One of the enumeration values to determine the controlled vocabulary of the value.
KINDCV_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.kindCV.

L

LabeledExtract - Interface in gov.nih.nci.mageom.domain.BioMaterial
LabeledExtracts are special BioSamples that have Compounds which are detectable (these are often fluorescent or reactive moieties).
LabeledExtractImpl - Class in gov.nih.nci.mageom.domain.BioMaterial.impl
LabeledExtracts are special BioSamples that have Compounds which are detectable (these are often fluorescent or reactive moieties).
LabeledExtractImpl() - Constructor for class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
Default constructor
LabeledExtractSearchCriteria - Interface in gov.nih.nci.mageom.search.BioMaterial
Represents a query for LabeledExtract objects.
LabeledExtractSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioMaterial.impl
Represents a query for LabeledExtract objects.
LabeledExtractSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
 
labels - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
DOCUMENT ME
labels - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
DOCUMENT ME
labelsCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
The count of Compound objects.
labelsCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
The count of Compound objects.
LABELSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id.
LABELSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id.
lastName - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
DOCUMENT ME
LASTNAME_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.lastName.
length - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
The length of the platform.
length - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
The number of residues in the biosequence.
LENGTH_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.length.
LENGTH_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.length.
LESS_THAN - Static variable in class gov.nih.nci.common.query.ConditionalEnum
 
LESS_THAN_OR_EQUAL_TO - Static variable in class gov.nih.nci.common.query.ConditionalEnum
 
LIKE - Static variable in class gov.nih.nci.common.query.ConditionalEnum
 
loadProperties(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
Long2LongObjectFieldConversion - Class in gov.nih.nci.caarray.services.util.ojb.conversions
 
Long2LongObjectFieldConversion() - Constructor for class gov.nih.nci.caarray.services.util.ojb.conversions.Long2LongObjectFieldConversion
 
lowerRightX - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Boundary vertical lower right position relative to (0,0).
LOWERRIGHTX_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.lowerRightX.
lowerRightY - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Boundary horizontal lower right position relative to (0,0).
LOWERRIGHTY_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.lowerRightY.

M

MAGEDescriminatorConverter - Class in gov.nih.nci.mageom.util
 
MAGEDescriminatorConverter() - Constructor for class gov.nih.nci.mageom.util.MAGEDescriminatorConverter
 
MAGEOJBUtils - Class in gov.nih.nci.mageom.persistence.ojb
 
MAGEOJBUtils() - Constructor for class gov.nih.nci.mageom.persistence.ojb.MAGEOJBUtils
 
MAGEOMObject - Class in gov.nih.nci.mageom.domain.impl
 
MAGEOMObject() - Constructor for class gov.nih.nci.mageom.domain.impl.MAGEOMObject
 
MAGEOMSearchCriteria - Class in gov.nih.nci.mageom.search.impl
 
MAGEOMSearchCriteria() - Constructor for class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
MAGERowReader - Class in gov.nih.nci.mageom.util
 
MAGERowReader(ClassDescriptor) - Constructor for class gov.nih.nci.mageom.util.MAGERowReader
 
MAGESCUtils - Class in gov.nih.nci.mageom.search
 
MAGESCUtils() - Constructor for class gov.nih.nci.mageom.search.MAGESCUtils
 
MAGEUtilities - Class in gov.nih.nci.mageom.util
This class defines functions that are useful throughout MAGE.
main(String[]) - Static method in class gov.nih.nci.common.persistence.conversions.Double2FloatConversion
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.conversions.String2DateConversion
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.DefaultSearchCriteriaHandler
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.ojb.DefaultOJBUtils
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.OJBQueryHandler
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.PropertyFileQueryNameResolver
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.Query2PBQ
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.RandomGUID
 
main(String[]) - Static method in class gov.nih.nci.common.persistence.SC2Query
 
main(String[]) - Static method in exception gov.nih.nci.common.process.QueryHandlerException
 
main(String[]) - Static method in class gov.nih.nci.common.query.BooleanOperationEnum
 
main(String[]) - Static method in class gov.nih.nci.common.query.ConditionalEnum
 
main(String[]) - Static method in class gov.nih.nci.common.query.FetchPath
 
main(String[]) - Static method in class gov.nih.nci.common.query.impl.AssociationCriterionImpl
 
main(String[]) - Static method in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
main(String[]) - Static method in class gov.nih.nci.common.query.impl.CriterionImpl
 
main(String[]) - Static method in class gov.nih.nci.common.query.impl.QueryImpl
 
main(String[]) - Static method in class gov.nih.nci.common.query.OrderByField
 
main(String[]) - Static method in class gov.nih.nci.common.query.QueryFactory
 
main(String[]) - Static method in class gov.nih.nci.common.query.SubClassFetchPath
 
main(String[]) - Static method in class gov.nih.nci.common.remote.rmi.RMIBinder
 
main(String[]) - Static method in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy
 
main(String[]) - Static method in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerRemote
 
main(String[]) - Static method in exception gov.nih.nci.common.search.RuntimeSearchException
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.MAGEOJBUtils
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.mn.ArrayDesignProvider
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.mn.ArrayManufacturer
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.mn.BioSourceContact
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.mn.DatabaseContact
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.mn.ExperimentProvider
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.mn.HardwareManufacturers
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.mn.SecurityGroupContact
 
main(String[]) - Static method in class gov.nih.nci.mageom.persistence.ojb.mn.SoftwareManufacturers
 
main(String[]) - Static method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
main(String[]) - Static method in class gov.nih.nci.mageom.search.MAGESCUtils
 
main(String[]) - Static method in class gov.nih.nci.mageom.search.SCNameResolver
 
main(String[]) - Static method in class gov.nih.nci.mageom.search.SearchCriteriaFactory
 
main(String[]) - Static method in class gov.nih.nci.mageom.ui.domain.XMLDispatcher
 
main(String[]) - Static method in class gov.nih.nci.mageom.util.DOMWriter
Main program entry point.
main(String[]) - Static method in class gov.nih.nci.mageom.util.MAGEDescriminatorConverter
 
main(String[]) - Static method in class gov.nih.nci.mageom.util.MAGERowReader
 
main(String[]) - Static method in class gov.nih.nci.mageom.util.OracleSpecific
 
main(String[]) - Static method in class gov.nih.nci.mageom.util.XMLUtility
 
make - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
The make of the Hardware (its manufacturer).
MAKE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.make.
makeHeavyXMLStringDoc(XMLInterface[]) - Static method in class gov.nih.nci.mageom.util.XMLUtility
makeHeavyXMLStringDoc()
makeXMLStringDoc(XMLInterface[]) - Static method in class gov.nih.nci.mageom.util.XMLUtility
makeXMLStringDoc()
makeXMLStringDoc(XMLInterface[], ArrayList) - Static method in class gov.nih.nci.mageom.util.XMLUtility
makeSelectedXMLStringDoc()
makeXMLStringDoc(SearchResult, boolean) - Static method in class gov.nih.nci.mageom.util.XMLUtility
makeXMLStringDoc()
makeXMLStringDoc(SearchResult, ArrayList, boolean) - Static method in class gov.nih.nci.mageom.util.XMLUtility
makeXMLStringDoc()
makeXMLStringTreeDoc(XMLInterface[], XMLInterface[][]) - Static method in class gov.nih.nci.mageom.util.XMLUtility
makeXMLStringTreeDoc()
makeXMLStringTreeDoc(XMLInterface[], XMLInterface[]) - Static method in class gov.nih.nci.mageom.util.XMLUtility
makeXMLStringTreeDoc()
ManufactureLIMS - Interface in gov.nih.nci.mageom.domain.Array
Information on the physical production of arrays within the laboratory.
ManufactureLIMSBiomaterial - Interface in gov.nih.nci.mageom.domain.Array
Stores the location from which a biomaterial was obtained.
ManufactureLIMSBiomaterialImpl - Class in gov.nih.nci.mageom.domain.Array.impl
Stores the location from which a biomaterial was obtained.
ManufactureLIMSBiomaterialImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
Default constructor
ManufactureLIMSBiomaterialSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for ManufactureLIMSBiomaterial objects.
ManufactureLIMSBiomaterialSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for ManufactureLIMSBiomaterial objects.
ManufactureLIMSBiomaterialSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
ManufactureLIMSImpl - Class in gov.nih.nci.mageom.domain.Array.impl
Information on the physical production of arrays within the laboratory.
ManufactureLIMSImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Default constructor
ManufactureLIMSSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for ManufactureLIMS objects.
ManufactureLIMSSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for ManufactureLIMS objects.
ManufactureLIMSSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
manufacturingDate - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
The date the arrays were manufactured
MANUFACTURINGDATE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.manufacturingDate.
Map - Interface in gov.nih.nci.mageom.domain.BioEvent
A Map is the description of how sources are transformed into a target.
MapImpl - Class in gov.nih.nci.mageom.domain.BioEvent.impl
A Map is the description of how sources are transformed into a target.
MapImpl() - Constructor for class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
Default constructor
MapSearchCriteria - Interface in gov.nih.nci.mageom.search.BioEvent
Represents a query for Map objects.
MapSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioEvent.impl
Represents a query for Map objects.
MapSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioEvent.impl.MapSearchCriteriaImpl
 
MassUnit - Interface in gov.nih.nci.mageom.domain.Measurement
Mass
MassUnitImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
Mass
MassUnitImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
Default constructor
MassUnitSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for MassUnit objects.
MassUnitSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for MassUnit objects.
MassUnitSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
 
materialType - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
DOCUMENT ME
materialTypeId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
The internal ID of the associated materialType object.
MAX_ATTEMPTS - Static variable in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
maxResultSize - Variable in class gov.nih.nci.common.query.impl.QueryImpl
 
MeasuredBioAssay - Interface in gov.nih.nci.mageom.domain.BioAssay
A measured bioAssay is the direct processing of information in a physical bioAssay by the featureExtraction event.
MeasuredBioAssayByBioSourceIdentifierQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
MeasuredBioAssayByBioSourceIdentifierQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByBioSourceIdentifierQuery
 
MeasuredBioAssayByBioSourceNameQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
MeasuredBioAssayByBioSourceNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByBioSourceNameQuery
 
MeasuredBioAssayByExperimentIdQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
MeasuredBioAssayByExperimentIdQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByExperimentIdQuery
 
MeasuredBioAssayByExperimentNameQuery - Class in gov.nih.nci.common.persistence.enhanced.BioAssay
 
MeasuredBioAssayByExperimentNameQuery() - Constructor for class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByExperimentNameQuery
 
measuredBioAssayData - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
DOCUMENT ME
MeasuredBioAssayData - Interface in gov.nih.nci.mageom.domain.BioAssayData
The data associated with the MeasuredBioAssay produced by FeatureExtraction.
measuredBioAssayDataCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
The count of MeasuredBioAssayData objects.
MEASUREDBIOASSAYDATAID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.MeasuredBioAssayData.id.
MeasuredBioAssayDataImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
The data associated with the MeasuredBioAssay produced by FeatureExtraction.
MeasuredBioAssayDataImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
Default constructor
MeasuredBioAssayDataSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for MeasuredBioAssayData objects.
MeasuredBioAssayDataSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for MeasuredBioAssayData objects.
MeasuredBioAssayDataSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.MeasuredBioAssayDataSearchCriteriaImpl
 
MeasuredBioAssayImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
A measured bioAssay is the direct processing of information in a physical bioAssay by the featureExtraction event.
MeasuredBioAssayImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
Default constructor
MeasuredBioAssaySearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay.enhanced
Use to search for gov.nih.nci.mageom.domain.BioAssay.MeasuredBioAssay types
MeasuredBioAssaySearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for MeasuredBioAssay objects.
MeasuredBioAssaySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.enhanced.impl
 
MeasuredBioAssaySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.MeasuredBioAssaySearchCriteriaImpl
 
MeasuredBioAssaySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for MeasuredBioAssay objects.
MeasuredBioAssaySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
 
MeasuredBioAssaySearchCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple marker/base criterion POJO.
MeasuredBioAssaySearchCriterion() - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioAssaySearchCriterion
 
measuredBioAssayTarget - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
DOCUMENT ME
measuredBioAssayTargetId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
The internal ID of the associated measuredBioAssayTarget object.
MeasuredBioSourceIdentifierCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
MeasuredBioSourceIdentifierCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioSourceIdentifierCriterion
 
MeasuredBioSourceNameCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
MeasuredBioSourceNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioSourceNameCriterion
 
MeasuredExperimentIdCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
MeasuredExperimentIdCriterion(Long[]) - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredExperimentIdCriterion
 
MeasuredExperimentNameCriterion - Class in gov.nih.nci.mageom.search.BioAssay.enhanced
Simple criterion POJO.
MeasuredExperimentNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredExperimentNameCriterion
 
MeasuredSignal - Interface in gov.nih.nci.mageom.domain.QuantitationType
Best measure from feature extraction as to the presence and intensity of the signal.
MeasuredSignalImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
Best measure from feature extraction as to the presence and intensity of the signal.
MeasuredSignalImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
Default constructor
MeasuredSignalSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for MeasuredSignal objects.
MeasuredSignalSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for MeasuredSignal objects.
MeasuredSignalSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.MeasuredSignalSearchCriteriaImpl
 
measurement - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
DOCUMENT ME
measurement - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
DOCUMENT ME
measurement - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
DOCUMENT ME
Measurement - Interface in gov.nih.nci.mageom.domain.Measurement
A Measurement is a quantity with a unit.
measurementId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
The internal ID of the associated measurement object.
measurementId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
The internal ID of the associated measurement object.
measurementId - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
The internal ID of the associated measurement object.
MeasurementImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
A Measurement is a quantity with a unit.
MeasurementImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Default constructor
MeasurementSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for Measurement objects.
MeasurementSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for Measurement objects.
MeasurementSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
members - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
DOCUMENT ME
membersCount - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
The count of Contact objects.
MEMBERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
MethodDescriptor - Class in gov.nih.nci.mageom.util
This class provides the simple mapping of association methods that should produce XML in a bean to the values needed by the XML builder to form the XML document and XLinks within it
MethodDescriptor(String, String, String, DomainObject) - Constructor for class gov.nih.nci.mageom.util.MethodDescriptor
Construtor associated with the bean
mgr - Static variable in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemote
 
midInitials - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
DOCUMENT ME
MIDINITIALS_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.midInitials.
mismatchInformation - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
DOCUMENT ME
mismatchInformation - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
DOCUMENT ME
mismatchInformation - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
DOCUMENT ME
MismatchInformation - Interface in gov.nih.nci.mageom.domain.DesignElement
Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence.
mismatchInformationCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
The count of MismatchInformation objects.
mismatchInformationCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
The count of MismatchInformation objects.
mismatchInformationCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
The count of MismatchInformation objects.
MismatchInformationImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence.
MismatchInformationImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Default constructor
MismatchInformationSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for MismatchInformation objects.
MismatchInformationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for MismatchInformation objects.
MismatchInformationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
model - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
The model (number) of a piece of hardware.
MODEL_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.model.

N

name - Variable in class gov.nih.nci.common.query.FetchPath
 
name - Variable in class gov.nih.nci.common.query.impl.AssociationCriterionImpl
 
name - Variable in class gov.nih.nci.common.query.impl.CriterionImpl
 
name - Variable in class gov.nih.nci.common.query.impl.QueryImpl
 
name - Variable in class gov.nih.nci.common.query.OrderByField
 
name - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
The name for this value.
name - Variable in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
The potentially ambiguous common identifier.
name - Variable in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
The name of the key.
NAME_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeValueSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue.name.
NAME_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.name.
NAME_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.name.
NameCriterion - Class in gov.nih.nci.mageom.search.Experiment.enhanced
Simple criterion POJO for people names.
NameCriterion(String, String) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion
 
NameCriterion(String, String, String) - Constructor for class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion
 
NameValueType - Interface in gov.nih.nci.mageom.domain
A tuple designed to store data, keyed by a name and type.
NameValueTypeImpl - Class in gov.nih.nci.mageom.domain.impl
A tuple designed to store data, keyed by a name and type.
NameValueTypeImpl() - Constructor for class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Default constructor
NameValueTypeSearchCriteria - Interface in gov.nih.nci.mageom.search
Represents a query for NameValueType objects.
NameValueTypeSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.impl
Represents a query for NameValueType objects.
NameValueTypeSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
negative - Variable in class gov.nih.nci.common.query.impl.AssociationCriterionImpl
 
negative - Variable in class gov.nih.nci.common.query.impl.CriterionImpl
 
new_ARRAY_ARRAY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_ARRAYGROUP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_ARRAYMANUFACTURE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_ARRAYMANUFACTUREDEVIATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_FEATUREDEFECT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_FIDUCIAL_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_MANUFACTURELIMS_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_MANUFACTURELIMSBIOMATERIAL_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_POSITIONDELTA_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAY_ZONEDEFECT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_ARRAYDESIGN_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_COMPOSITEGROUP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_DESIGNELEMENTGROUP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_FEATUREGROUP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_PHYSICALARRAYDESIGN_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_REPORTERGROUP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_ZONE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_ZONEGROUP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGN_ZONELAYOUT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_ARRAYDESIGNREPORTERSUMMARY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractEnhancedSearchCriteriaFactory
 
new_AUDITANDSECURITY_AUDIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_AUDITANDSECURITY_CONTACT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_AUDITANDSECURITY_ORGANIZATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_AUDITANDSECURITY_PERSON_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_AUDITANDSECURITY_SECURITY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_AUDITANDSECURITY_SECURITYGROUP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_BIOASSAY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_BIOASSAYCREATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_BIOASSAYTREATMENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_CHANNEL_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_DERIVEDBIOASSAY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_FEATUREEXTRACTION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_HYBRIDIZATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_IMAGE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_IMAGEACQUISITION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_MEASUREDBIOASSAY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAY_PHYSICALBIOASSAY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_BIOASSAYDATA_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_BIOASSAYDATUM_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_BIOASSAYDIMENSION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_BIOASSAYMAP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_BIOASSAYMAPPING_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_BIODATACUBE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_BIODATATUPLES_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_BIODATAVALUES_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_COMPOSITESEQUENCEDIMENSION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_DERIVEDBIOASSAYDATA_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_DESIGNELEMENTDIMENSION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_DESIGNELEMENTMAP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_DESIGNELEMENTMAPPING_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_FEATUREDIMENSION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_MEASUREDBIOASSAYDATA_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_QUANTITATIONTYPEDIMENSION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_QUANTITATIONTYPEMAP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_QUANTITATIONTYPEMAPPING_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_REPORTERDIMENSION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOASSAYDATA_TRANSFORMATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOEVENT_BIOEVENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOEVENT_MAP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOMATERIAL_BIOMATERIAL_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOMATERIAL_BIOMATERIALMEASUREMENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOMATERIAL_BIOSAMPLE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOMATERIAL_BIOSOURCE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOMATERIAL_COMPOUND_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOMATERIAL_COMPOUNDMEASUREMENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOMATERIAL_LABELEDEXTRACT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOMATERIAL_TREATMENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOSEQUENCE_BIOSEQUENCE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOSEQUENCE_SEQFEATURE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOSEQUENCE_SEQFEATURELOCATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BIOSEQUENCE_SEQUENCEPOSITION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_BQS_BIBLIOGRAPHICREFERENCE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DERIVEDBIOASSAY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractEnhancedSearchCriteriaFactory
 
new_DESCRIBABLE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESCRIPTION_DATABASE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESCRIPTION_DATABASEENTRY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESCRIPTION_DESCRIPTION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESCRIPTION_EXTERNALREFERENCE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESCRIPTION_ONTOLOGYENTRY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_COMPOSITECOMPOSITEMAP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_COMPOSITEPOSITION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_COMPOSITESEQUENCE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_DESIGNELEMENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_FEATURE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_FEATUREINFORMATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_FEATURELOCATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_FEATUREREPORTERMAP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_MISMATCHINFORMATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_POSITION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_REPORTER_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_REPORTERCOMPOSITEMAP_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_DESIGNELEMENT_REPORTERPOSITION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_EXPERIMENT_EXPERIMENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_EXPERIMENT_EXPERIMENTALFACTOR_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_EXPERIMENT_EXPERIMENTDESIGN_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_EXPERIMENT_FACTORVALUE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_EXPERIMENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractEnhancedSearchCriteriaFactory
 
new_EXPERIMENTFILE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractEnhancedSearchCriteriaFactory
 
new_EXTENDABLE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_HIGHERLEVELANALYSIS_BIOASSAYDATACLUSTER_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_HIGHERLEVELANALYSIS_NODE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_HIGHERLEVELANALYSIS_NODECONTENTS_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_HIGHERLEVELANALYSIS_NODEVALUE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_IDENTIFIABLE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREDBIOASSAY_SC() - Static method in class gov.nih.nci.mageom.search.AbstractEnhancedSearchCriteriaFactory
 
new_MEASUREMENT_CONCENTRATIONUNIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREMENT_DISTANCEUNIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREMENT_MASSUNIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREMENT_MEASUREMENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREMENT_QUANTITYUNIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREMENT_TEMPERATUREUNIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREMENT_TIMEUNIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREMENT_UNIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_MEASUREMENT_VOLUMEUNIT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_NAMEVALUETYPE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_HARDWARE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_HARDWAREAPPLICATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_PARAMETER_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_PARAMETERIZABLE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_PARAMETERIZABLEAPPLICATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_PARAMETERVALUE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_PROTOCOL_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_PROTOCOLAPPLICATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_SOFTWARE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_PROTOCOL_SOFTWAREAPPLICATION_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_CONFIDENCEINDICATOR_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_DERIVEDSIGNAL_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_ERROR_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_EXPECTEDVALUE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_FAILED_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_MEASUREDSIGNAL_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_PRESENTABSENT_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_PVALUE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_QUANTITATIONTYPE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_RATIO_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_SPECIALIZEDQUANTITATIONTYPE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
new_QUANTITATIONTYPE_STANDARDQUANTITATIONTYPE_SC() - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
newAssociationCriterion(String, Query) - Static method in class gov.nih.nci.common.query.QueryFactory
 
newAssociationCriterion(String, Query, boolean) - Static method in class gov.nih.nci.common.query.QueryFactory
 
newCriterion(String, ConditionalEnum) - Static method in class gov.nih.nci.common.query.QueryFactory
 
newCriterionGroup(BooleanOperationEnum) - Static method in class gov.nih.nci.common.query.QueryFactory
 
newQuery(String) - Static method in class gov.nih.nci.common.query.QueryFactory
 
newSearchCriteria(String) - Static method in class gov.nih.nci.mageom.search.AbstractSearchCriteriaFactory
 
newSecureSessionManager() - Method in class gov.nih.nci.common.search.session.SecureSessionManagerFactory
 
newSequence - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
The sequence that replaces the specified sequence starting at start_coord.
NEWSEQUENCE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.newSequence.
Node - Interface in gov.nih.nci.mageom.domain.HigherLevelAnalysis
An individual component of a clustering.
nodeContents - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
DOCUMENT ME
NodeContents - Interface in gov.nih.nci.mageom.domain.HigherLevelAnalysis
The contents of a node for any or all of the three Dimensions.
nodeContentsCount - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
The count of NodeContents objects.
NodeContentsImpl - Class in gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl
The contents of a node for any or all of the three Dimensions.
NodeContentsImpl() - Constructor for class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
Default constructor
NodeContentsSearchCriteria - Interface in gov.nih.nci.mageom.search.HigherLevelAnalysis
Represents a query for NodeContents objects.
NodeContentsSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.HigherLevelAnalysis.impl
Represents a query for NodeContents objects.
NodeContentsSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeContentsSearchCriteriaImpl
 
NodeImpl - Class in gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl
An individual component of a clustering.
NodeImpl() - Constructor for class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Default constructor
nodes - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
DOCUMENT ME
nodes - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
DOCUMENT ME
nodesCount - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
The count of Node objects.
nodesCount - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
The count of Node objects.
NodeSearchCriteria - Interface in gov.nih.nci.mageom.search.HigherLevelAnalysis
Represents a query for Node objects.
NodeSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.HigherLevelAnalysis.impl
Represents a query for Node objects.
NodeSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeSearchCriteriaImpl
 
nodeValue - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
DOCUMENT ME
NodeValue - Interface in gov.nih.nci.mageom.domain.HigherLevelAnalysis
A value associated with the Node that can rank it in relation to the other nodes produced by the clustering algorithm.
nodeValueCount - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
The count of NodeValue objects.
NodeValueImpl - Class in gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl
A value associated with the Node that can rank it in relation to the other nodes produced by the clustering algorithm.
NodeValueImpl() - Constructor for class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Default constructor
NodeValueSearchCriteria - Interface in gov.nih.nci.mageom.search.HigherLevelAnalysis
Represents a query for NodeValue objects.
NodeValueSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.HigherLevelAnalysis.impl
Represents a query for NodeValue objects.
NodeValueSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
 
normalizationDescription - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
DOCUMENT ME
normalizationDescriptionId - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
The internal ID of the associated normalizationDescription object.
normalize(String) - Method in class gov.nih.nci.mageom.util.DOMWriter
Normalizes the given string.
NOT_EQUAL_TO - Static variable in class gov.nih.nci.common.query.ConditionalEnum
 
NOT_LIKE - Static variable in class gov.nih.nci.common.query.ConditionalEnum
 
numArrays - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
This attribute defines the number of arrays on a chip or a slide.
NUMARRAYS_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.numArrays.
numberOfFeatures - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
The number of features for this array
NUMBEROFFEATURES_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.numberOfFeatures.
numFeaturesPerCol - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
The number of features from top to bottom of the grid.
NUMFEATURESPERCOL_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.numFeaturesPerCol.
numFeaturesPerRow - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
The number of features from left to right.
NUMFEATURESPERROW_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.numFeaturesPerRow.

O

OJBQueryHandler - Class in gov.nih.nci.common.persistence
 
OJBQueryHandler() - Constructor for class gov.nih.nci.common.persistence.OJBQueryHandler
 
OJBUtils - Interface in gov.nih.nci.common.persistence.ojb
 
ONE_MINUTE - Static variable in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
ontologyEntries - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
DOCUMENT ME
ontologyEntriesCount - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
The count of OntologyEntry objects.
OntologyEntry - Interface in gov.nih.nci.mageom.domain.Description
A single entry from an ontology or a controlled vocabulary.
OntologyEntryImpl - Class in gov.nih.nci.mageom.domain.Description.impl
A single entry from an ontology or a controlled vocabulary.
OntologyEntryImpl() - Constructor for class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Default constructor
OntologyEntrySearchCriteria - Interface in gov.nih.nci.mageom.search.Description
Represents a query for OntologyEntry objects.
OntologyEntrySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Description.impl
Represents a query for OntologyEntry objects.
OntologyEntrySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
ontologyReference - Variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
DOCUMENT ME
ontologyReferenceId - Variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
The internal ID of the associated ontologyReference object.
OR - Static variable in class gov.nih.nci.common.query.BooleanOperationEnum
 
OR_VALUE - Static variable in class gov.nih.nci.common.query.BooleanOperationEnum
 
OracleSpecific - Class in gov.nih.nci.mageom.util
This class defines functions for doing Oracle-specific database actions.
OracleSpecific() - Constructor for class gov.nih.nci.mageom.util.OracleSpecific
 
order - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
The order to expect the dimension.
order - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
The chronological order in which a treatment occurred (in relation to other treatments).
ORDER_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.TreatmentSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Treatment.order.
orderBy - Variable in class gov.nih.nci.common.query.impl.QueryImpl
 
OrderByField - Class in gov.nih.nci.common.query
 
OrderByField(String, boolean) - Constructor for class gov.nih.nci.common.query.OrderByField
 
Organization - Interface in gov.nih.nci.mageom.domain.AuditAndSecurity
Organizations are entities like companies, universities, government agencies for which the attributes are self describing.
OrganizationImpl - Class in gov.nih.nci.mageom.domain.AuditAndSecurity.impl
Organizations are entities like companies, universities, government agencies for which the attributes are self describing.
OrganizationImpl() - Constructor for class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
Default constructor
OrganizationSearchCriteria - Interface in gov.nih.nci.mageom.search.AuditAndSecurity
Represents a query for Organization objects.
OrganizationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.AuditAndSecurity.impl
Represents a query for Organization objects.
OrganizationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
 
orientationMark - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
For a human to determine where the top left side of the array is, such as a barcode or frosted side the glass, etc.
ORIENTATIONMARK_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.orientationMark.
orientationMarkPosition - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
One of top, bottom, left or right.
ORIENTATIONMARKPOSITION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.orientationMarkPosition.
originRelativeTo - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
What the array origin is relative to, e.g.
ORIGINRELATIVETO_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.originRelativeTo.
otherKind - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Name of the controlled vocabulary if it isn't one of the Unit subclasses.
OTHERKIND_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.otherKind.
out - Variable in class gov.nih.nci.mageom.util.DOMWriter
Print writer.
owner - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
DOCUMENT ME
ownerCount - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
The count of Contact objects.
OWNERID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.

P

pages - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
PAGES_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.pages.
Parameter - Interface in gov.nih.nci.mageom.domain.Protocol
A Parameter is a replaceable value in a Parameterizable class.
ParameterImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
A Parameter is a replaceable value in a Parameterizable class.
ParameterImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
Default constructor
Parameterizable - Interface in gov.nih.nci.mageom.domain.Protocol
The Parameterizable interface encapsulates the association of Parameters with ParameterValues.
ParameterizableApplication - Interface in gov.nih.nci.mageom.domain.Protocol
The interface that is the use of a Parameterizable class.
ParameterizableApplicationImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
The interface that is the use of a Parameterizable class.
ParameterizableApplicationImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
Default constructor
ParameterizableApplicationSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for ParameterizableApplication objects.
ParameterizableApplicationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for ParameterizableApplication objects.
ParameterizableApplicationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableApplicationSearchCriteriaImpl
 
ParameterizableImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
The Parameterizable interface encapsulates the association of Parameters with ParameterValues.
ParameterizableImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Default constructor
ParameterizableSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for Parameterizable objects.
ParameterizableSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for Parameterizable objects.
ParameterizableSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
 
parameters - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
parametersCount - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
The count of OntologyEntry objects.
ParameterSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for Parameter objects.
ParameterSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for Parameter objects.
ParameterSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.ParameterSearchCriteriaImpl
 
parameterType - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
DOCUMENT ME
parameterTypeId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
The internal ID of the associated parameterType object.
PARAMETERTYPEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameter.id.
parameterTypes - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
DOCUMENT ME
parameterTypesCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
The count of Parameter objects.
ParameterValue - Interface in gov.nih.nci.mageom.domain.Protocol
The value of a Parameter.
ParameterValueImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
The value of a Parameter.
ParameterValueImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
Default constructor
parameterValues - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
DOCUMENT ME
parameterValuesCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
The count of ParameterValue objects.
ParameterValueSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for ParameterValue objects.
ParameterValueSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for ParameterValue objects.
ParameterValueSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
parent - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
DOCUMENT ME
parentId - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
The internal ID of the associated parent object.
PARENTID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id.
parseURL(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Parses a URL into its component pieces.
performer - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
DOCUMENT ME
performerId - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
The internal ID of the associated performer object.
PERFORMERID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
performers - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
DOCUMENT ME
performersCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
The count of Person objects.
PERFORMERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.id.
performSearch() - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummarySearchCriteria
Performs the search.
performSearch() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl
 
performSearch() - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioAssaySearchCriteria
Performs the search.
performSearch() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.DerivedBioAssaySearchCriteriaImpl
 
performSearch() - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.MeasuredBioAssaySearchCriteriaImpl
 
performSearch() - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioAssaySearchCriteria
Performs the search.
performSearch() - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSearchCriteria
Performs the search.
performSearch() - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Performs the search.
performSearch() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentFileSearchCriteriaImpl
 
performSearch() - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
performSearchHelper() - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
 
PermissionObject - Class in gov.nih.nci.mageom.util
This class acts as a base object for the core beans.
PermissionObject() - Constructor for class gov.nih.nci.mageom.util.PermissionObject
 
PersistenceManagerQueryHandler - Class in gov.nih.nci.common.persistence
 
PersistenceManagerQueryHandler() - Constructor for class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
Person - Interface in gov.nih.nci.mageom.domain.AuditAndSecurity
A person for which the attributes are self describing.
PersonImpl - Class in gov.nih.nci.mageom.domain.AuditAndSecurity.impl
A person for which the attributes are self describing.
PersonImpl() - Constructor for class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Default constructor
PersonSearchCriteria - Interface in gov.nih.nci.mageom.search.AuditAndSecurity
Represents a query for Person objects.
PersonSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.AuditAndSecurity.impl
Represents a query for Person objects.
PersonSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
phone - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
DOCUMENT ME
PHONE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.phone.
PhysicalArrayDesign - Interface in gov.nih.nci.mageom.domain.ArrayDesign
A design that is expected to be used to manufacture physical arrays.
PhysicalArrayDesignImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
A design that is expected to be used to manufacture physical arrays.
PhysicalArrayDesignImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
Default constructor
PhysicalArrayDesignSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for PhysicalArrayDesign objects.
PhysicalArrayDesignSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for PhysicalArrayDesign objects.
PhysicalArrayDesignSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
 
physicalBioAssay - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
DOCUMENT ME
PhysicalBioAssay - Interface in gov.nih.nci.mageom.domain.BioAssay
A bioAssay created by the bioAssayCreation event (e.g.
physicalBioAssayData - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
DOCUMENT ME
physicalBioAssayDataCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
The count of Image objects.
physicalBioAssayId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
The internal ID of the associated physicalBioAssay object.
PHYSICALBIOASSAYID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id.
PhysicalBioAssayImpl - Class in gov.nih.nci.mageom.domain.BioAssay.impl
A bioAssay created by the bioAssayCreation event (e.g.
PhysicalBioAssayImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Default constructor
PhysicalBioAssaySearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssay
Represents a query for PhysicalBioAssay objects.
PhysicalBioAssaySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssay.impl
Represents a query for PhysicalBioAssay objects.
PhysicalBioAssaySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssay.impl.PhysicalBioAssaySearchCriteriaImpl
 
physicalBioAssaySource - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
DOCUMENT ME
physicalBioAssaySourceId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
The internal ID of the associated physicalBioAssaySource object.
PHYSICALBIOASSAYSOURCEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id.
physicalBioAssayTarget - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
DOCUMENT ME
physicalBioAssayTargetId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
The internal ID of the associated physicalBioAssayTarget object.
polymerType - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
DOCUMENT ME
polymerTypeId - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
The internal ID of the associated polymerType object.
position - Variable in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
DOCUMENT ME
position - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
DOCUMENT ME
Position - Interface in gov.nih.nci.mageom.domain.DesignElement
Specifies a position on an array.
positionDelta - Variable in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
DOCUMENT ME
positionDelta - Variable in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
DOCUMENT ME
PositionDelta - Interface in gov.nih.nci.mageom.domain.Array
The delta the feature was actually printed on the array from the position specified for the feature in the array design.
positionDeltaId - Variable in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
The internal ID of the associated positionDelta object.
positionDeltaId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
The internal ID of the associated positionDelta object.
PositionDeltaImpl - Class in gov.nih.nci.mageom.domain.Array.impl
The delta the feature was actually printed on the array from the position specified for the feature in the array design.
PositionDeltaImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Default constructor
PositionDeltaSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for PositionDelta objects.
PositionDeltaSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for PositionDelta objects.
PositionDeltaSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
positionId - Variable in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
The internal ID of the associated position object.
positionId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
The internal ID of the associated position object.
PositionImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
Specifies a position on an array.
PositionImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
Default constructor
PositionSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for Position objects.
PositionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for Position objects.
PositionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
prefetchPath - Variable in class gov.nih.nci.common.query.impl.QueryImpl
 
PresentAbsent - Interface in gov.nih.nci.mageom.domain.QuantitationType
Indicates relative presence or absence.
PresentAbsentImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
Indicates relative presence or absence.
PresentAbsentImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
Default constructor
PresentAbsentSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for PresentAbsent objects.
PresentAbsentSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for PresentAbsent objects.
PresentAbsentSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.PresentAbsentSearchCriteriaImpl
 
print(Node) - Method in class gov.nih.nci.mageom.util.DOMWriter
Prints the specified node, recursively.
print(Node, PrintWriter) - Method in class gov.nih.nci.mageom.util.DOMWriter
 
printClassName(Object) - Method in class gov.nih.nci.mageom.ui.domain.XMLDispatcher
 
producerTransformation - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
DOCUMENT ME
producerTransformationId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
The internal ID of the associated producerTransformation object.
PropertyFileQueryNameResolver - Class in gov.nih.nci.common.persistence
 
PropertyFileQueryNameResolver() - Constructor for class gov.nih.nci.common.persistence.PropertyFileQueryNameResolver
 
propertySets - Variable in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
DOCUMENT ME
propertySets - Variable in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
DOCUMENT ME
propertySetsCount - Variable in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
The count of NameValueType objects.
propertySetsCount - Variable in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
The count of NameValueType objects.
protocol - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
DOCUMENT ME
Protocol - Interface in gov.nih.nci.mageom.domain.Protocol
A Protocol is a parameterizable description of a method.
ProtocolApplication - Interface in gov.nih.nci.mageom.domain.Protocol
The use of a protocol with the requisite Parameters and ParameterValues.
ProtocolApplicationImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
The use of a protocol with the requisite Parameters and ParameterValues.
ProtocolApplicationImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Default constructor
protocolApplications - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
DOCUMENT ME
protocolApplications - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
DOCUMENT ME
protocolApplications - Variable in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
DOCUMENT ME
protocolApplicationsCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
The count of ProtocolApplication objects.
protocolApplicationsCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
The count of ProtocolApplication objects.
protocolApplicationsCount - Variable in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
The count of ProtocolApplication objects.
ProtocolApplicationSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for ProtocolApplication objects.
ProtocolApplicationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for ProtocolApplication objects.
ProtocolApplicationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
protocolId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
The internal ID of the associated protocol object.
PROTOCOLID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.id.
ProtocolImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
A Protocol is a parameterizable description of a method.
ProtocolImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Default constructor
ProtocolSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for Protocol objects.
ProtocolSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for Protocol objects.
ProtocolSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
providers - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
DOCUMENT ME
providersCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
The count of Contact objects.
PROVIDERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
publication - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
PUBLICATION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.publication.
publisher - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
PUBLISHER_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.publisher.
putCriterion(String, int, Object) - Method in interface gov.nih.nci.common.search.Searchable
 
putCriterion(String, Searchable) - Method in interface gov.nih.nci.common.search.Searchable
 
putCriterion(String, Searchable) - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
Not supported.
putCriterion(String, int, Object) - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
Not supported.
putCriterion(String, Searchable) - Method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
PValue - Interface in gov.nih.nci.mageom.domain.QuantitationType
Measurement of the accuracy of a quantitation.
PValueImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
Measurement of the accuracy of a quantitation.
PValueImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
Default constructor
PValueSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for PValue objects.
PValueSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for PValue objects.
PValueSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.PValueSearchCriteriaImpl
 

Q

quality - Variable in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
A brief description of the quality of the array manufacture process.
QUALITY_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMS.quality.
qualityControlDescription - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
DOCUMENT ME
qualityControlDescriptionId - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
The internal ID of the associated qualityControlDescription object.
qualityControlStatistics - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
DOCUMENT ME
qualityControlStatistics - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
DOCUMENT ME
qualityControlStatisticsCount - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
The count of NameValueType objects.
qualityControlStatisticsCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
The count of NameValueType objects.
quantitationDimension - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
DOCUMENT ME
quantitationDimensionId - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
The internal ID of the associated quantitationDimension object.
quantitationType - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
DOCUMENT ME
QuantitationType - Interface in gov.nih.nci.mageom.domain.QuantitationType
A method for calculating a single datum of the matrix (e.g.
quantitationTypeDimension - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
DOCUMENT ME
QuantitationTypeDimension - Interface in gov.nih.nci.mageom.domain.BioAssayData
An ordered list of quantitationTypes.
quantitationTypeDimensionId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
The internal ID of the associated quantitationTypeDimension object.
QuantitationTypeDimensionImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
An ordered list of quantitationTypes.
QuantitationTypeDimensionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
Default constructor
QuantitationTypeDimensionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for QuantitationTypeDimension objects.
QuantitationTypeDimensionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for QuantitationTypeDimension objects.
QuantitationTypeDimensionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
quantitationTypeId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
The internal ID of the associated quantitationType object.
QUANTITATIONTYPEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id.
QuantitationTypeImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
A method for calculating a single datum of the matrix (e.g.
QuantitationTypeImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Default constructor
QuantitationTypeMap - Interface in gov.nih.nci.mageom.domain.BioAssayData
A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType.
QuantitationTypeMapImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType.
QuantitationTypeMapImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
Default constructor
quantitationTypeMapping - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
rank: 3
QuantitationTypeMapping - Interface in gov.nih.nci.mageom.domain.BioAssayData
Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.
quantitationTypeMappingId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
The internal ID of the associated quantitationTypeMapping object.
QuantitationTypeMappingImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.
QuantitationTypeMappingImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
Default constructor
QuantitationTypeMappingSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for QuantitationTypeMapping objects.
QuantitationTypeMappingSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for QuantitationTypeMapping objects.
QuantitationTypeMappingSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
 
quantitationTypeMaps - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
DOCUMENT ME
quantitationTypeMaps - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
DOCUMENT ME
quantitationTypeMapsCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
The count of QuantitationTypeMap objects.
quantitationTypeMapsCount - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
The count of QuantitationTypeMap objects.
QuantitationTypeMapSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for QuantitationTypeMap objects.
QuantitationTypeMapSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for QuantitationTypeMap objects.
QuantitationTypeMapSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
QUANTITATIONTYPEMAPSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap.id.
quantitationTypes - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
DOCUMENT ME
quantitationTypesCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
The count of QuantitationType objects.
QuantitationTypeSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for QuantitationType objects.
QuantitationTypeSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for QuantitationType objects.
QuantitationTypeSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
QUANTITATIONTYPESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id.
QuantityUnit - Interface in gov.nih.nci.mageom.domain.Measurement
Quantity
QuantityUnitImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
Quantity
QuantityUnitImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
Default constructor
QuantityUnitSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for QuantityUnit objects.
QuantityUnitSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for QuantityUnit objects.
QuantityUnitSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
 
query - Variable in class gov.nih.nci.common.query.impl.AssociationCriterionImpl
 
Query - Interface in gov.nih.nci.common.query
 
Query2PBQ - Class in gov.nih.nci.common.persistence
 
Query2PBQ() - Constructor for class gov.nih.nci.common.persistence.Query2PBQ
 
query_findAllBioSamplesFromBioSamples(Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.CommonQueryHelper
 
query_findAllBioSamplesWithCharacteristicsCategoryMatchingOrganism(String[]) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
query_findAllBioSources() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByBioSourceIdentifierQuery
 
query_findAllBioSources() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByBioSourceNameQuery
 
query_findAllBioSources() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByBioSourceIdentifierQuery
 
query_findAllBioSources() - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByBioSourceNameQuery
 
query_findAllBioSourcesWithCharacteristicsCategoryMatchingOrganism(String[]) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
query_findAllBioSourcesWithCharacteristicsCategoryMatchingOrganismPart() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
query_findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByInvestigatorNameQuery
 
query_findAllExperiments(Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
query_findAllExperiments() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByPubMedIdQuery
 
query_findAllExperiments(Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
query_findAllLabeledExtractsFromBioSamples(Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
query_findAllLabeledExtractsFromBioSamples(Collection<Long>) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
query_findAllOrganizations() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByChipPlatformTypeQuery
 
query_findAllPersons() - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByInvestigatorNameQuery
 
query_findAllPhysicalBioAssaysFromPhysicalBioAssays(Collection) - Method in class gov.nih.nci.common.persistence.enhanced.CommonQueryHelper
 
QueryFactory - Class in gov.nih.nci.common.query
 
QueryFactory() - Constructor for class gov.nih.nci.common.query.QueryFactory
 
QueryHandler - Interface in gov.nih.nci.common.process
 
QueryHandlerException - Exception in gov.nih.nci.common.process
 
QueryHandlerException(String) - Constructor for exception gov.nih.nci.common.process.QueryHandlerException
 
QueryImpl - Class in gov.nih.nci.common.query.impl
 
QueryImpl(String) - Constructor for class gov.nih.nci.common.query.impl.QueryImpl
 
queryName - Variable in class gov.nih.nci.common.query.SubClassFetchPath
 
QueryNameResolver - Interface in gov.nih.nci.common.persistence
 
quote(Collection) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 

R

RandomGUID - Class in gov.nih.nci.common.persistence
In the multitude of java GUID generators, I found none that guaranteed randomness.
RandomGUID() - Constructor for class gov.nih.nci.common.persistence.RandomGUID
 
RandomGUID(boolean) - Constructor for class gov.nih.nci.common.persistence.RandomGUID
 
Ratio - Interface in gov.nih.nci.mageom.domain.QuantitationType
The ratio of two or more signals, typically between two channels.
RatioImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
The ratio of two or more signals, typically between two channels.
RatioImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
Default constructor
RatioSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for Ratio objects.
RatioSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for Ratio objects.
RatioSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.RatioSearchCriteriaImpl
 
read(BioDataCubeImpl) - Method in interface gov.nih.nci.mageom.util.cubereader.CubeReader
Returns the cube data associated with a BioDataCube.
readManagerDirectory(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Reads the contents of a MAGE manager directory, returning the contents as a HashMap relating managers to machine addresses.
readObjectFrom(Map) - Method in class gov.nih.nci.mageom.util.BioDataCubeRowReader
 
readObjectFrom(Map) - Method in class gov.nih.nci.mageom.util.MAGERowReader
 
readPropertyFile(String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
Reads the contents of a properties file, returning the contents as a Properties object.
refresh() - Method in interface gov.nih.nci.common.search.session.SecureSession
Sets the startTime to the current time.
refresh() - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
regions - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
DOCUMENT ME
regionsCount - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
The count of SeqFeatureLocation objects.
releaseDate - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
When the software was released.
RELEASEDATE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.releaseDate.
replacedLength - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Length of the original sequence that is replaced.
REPLACEDLENGTH_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.replacedLength.
replicateDescription - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
DOCUMENT ME
replicateDescriptionId - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
The internal ID of the associated replicateDescription object.
reporter - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
DOCUMENT ME
reporter - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
DOCUMENT ME
Reporter - Interface in gov.nih.nci.mageom.domain.DesignElement
A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
ReporterCompositeMap - Interface in gov.nih.nci.mageom.domain.DesignElement
A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.
ReporterCompositeMapImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.
ReporterCompositeMapImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
Default constructor
reporterCompositeMaps - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
DOCUMENT ME
reporterCompositeMapsCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
The count of ReporterCompositeMap objects.
ReporterCompositeMapSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for ReporterCompositeMap objects.
ReporterCompositeMapSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for ReporterCompositeMap objects.
ReporterCompositeMapSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
 
ReporterDimension - Interface in gov.nih.nci.mageom.domain.BioAssayData
Specialized DesignElementDimension to hold Reporters.
ReporterDimensionImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
Specialized DesignElementDimension to hold Reporters.
ReporterDimensionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
Default constructor
ReporterDimensionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for ReporterDimension objects.
ReporterDimensionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for ReporterDimension objects.
ReporterDimensionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
 
ReporterGroup - Interface in gov.nih.nci.mageom.domain.ArrayDesign
Allows specification of the type of Reporter Design Element.
ReporterGroupImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
Allows specification of the type of Reporter Design Element.
ReporterGroupImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
Default constructor
reporterGroups - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
DOCUMENT ME
reporterGroupsCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
The count of ReporterGroup objects.
ReporterGroupSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for ReporterGroup objects.
ReporterGroupSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for ReporterGroup objects.
ReporterGroupSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
 
REPORTERGROUPSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ReporterGroup.id.
reporterId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
The internal ID of the associated reporter object.
reporterId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
The internal ID of the associated reporter object.
REPORTERID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id.
REPORTERID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id.
ReporterImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
ReporterImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Default constructor
ReporterNameCriterion - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Simple criterion POJO.
ReporterNameCriterion(String[]) - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.ReporterNameCriterion
 
ReporterPosition - Interface in gov.nih.nci.mageom.domain.DesignElement
The location in the composite target's sequence to which a source reporter maps.
ReporterPositionImpl - Class in gov.nih.nci.mageom.domain.DesignElement.impl
The location in the composite target's sequence to which a source reporter maps.
ReporterPositionImpl() - Constructor for class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
Default constructor
ReporterPositionSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for ReporterPosition objects.
ReporterPositionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for ReporterPosition objects.
ReporterPositionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
 
reporterPositionSources - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
DOCUMENT ME
reporterPositionSourcesCount - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
The count of ReporterPosition objects.
reporters - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
DOCUMENT ME
reporters - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
DOCUMENT ME
reportersCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
The count of Reporter objects.
reportersCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
The count of Reporter objects.
ReporterSearchCriteria - Interface in gov.nih.nci.mageom.search.DesignElement
Represents a query for Reporter objects.
ReporterSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.DesignElement.impl
Represents a query for Reporter objects.
ReporterSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
 
REPORTERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id.
REPORTERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id.
ReporterSummary - Interface in gov.nih.nci.mageom.search.ArrayDesign.enhanced
Coarse-grained data representation of significant Reporter annotation information.
ReporterSummaryBean - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl
 
ReporterSummaryBean() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
resolve(String) - Method in class gov.nih.nci.common.persistence.PropertyFileQueryNameResolver
 
resolve(String) - Method in interface gov.nih.nci.common.persistence.QueryNameResolver
Returns a fully-qualified class name given a query name
RMIBinder - Class in gov.nih.nci.common.remote.rmi
 
RMIBinder() - Constructor for class gov.nih.nci.common.remote.rmi.RMIBinder
 
RMIBinder.ShutdownThread - Class in gov.nih.nci.common.remote.rmi
 
RMIBinder.ShutdownThread(int) - Constructor for class gov.nih.nci.common.remote.rmi.RMIBinder.ShutdownThread
 
RMIBinder.ShutdownThread(int, String) - Constructor for class gov.nih.nci.common.remote.rmi.RMIBinder.ShutdownThread
 
RMISearchCriteriaHandlerProxy - Class in gov.nih.nci.common.remote.rmi
 
RMISearchCriteriaHandlerProxy() - Constructor for class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy
 
RMISearchCriteriaHandlerRemote - Class in gov.nih.nci.common.remote.rmi
 
RMISearchCriteriaHandlerRemote() - Constructor for class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerRemote
 
RMISearchCriteriaHandlerRemoteIF - Interface in gov.nih.nci.common.remote.rmi
 
RMISecureSessionManagerProxy - Class in gov.nih.nci.common.remote.rmi
 
RMISecureSessionManagerProxy() - Constructor for class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
RMISecureSessionManagerRemote - Class in gov.nih.nci.common.remote.rmi
 
RMISecureSessionManagerRemote() - Constructor for class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemote
 
RMISecureSessionManagerRemoteIF - Interface in gov.nih.nci.common.remote.rmi
 
rmiSrvDataPort - Variable in class gov.nih.nci.common.remote.rmi.RMIBinder
 
rmiSrvHost - Variable in class gov.nih.nci.common.remote.rmi.RMIBinder
 
rmiSrvPort - Variable in class gov.nih.nci.common.remote.rmi.RMIBinder
 
rmiSrvShutdownPort - Variable in class gov.nih.nci.common.remote.rmi.RMIBinder
 
roles - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
DOCUMENT ME
rolesCount - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
The count of OntologyEntry objects.
row - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
row position in the ZoneGroup
row - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
row position in the Zone
ROW_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.row.
ROW_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.row.
run() - Method in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
run() - Method in class gov.nih.nci.common.remote.rmi.RMIBinder.ShutdownThread
 
runGetId(Object) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
runMethod(Object, String) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
runSetId(Object, Object) - Static method in class gov.nih.nci.mageom.util.MAGEUtilities
 
RuntimeSearchException - Exception in gov.nih.nci.common.search
 
RuntimeSearchException() - Constructor for exception gov.nih.nci.common.search.RuntimeSearchException
 
RuntimeSearchException(String) - Constructor for exception gov.nih.nci.common.search.RuntimeSearchException
 
RuntimeSearchException(Throwable) - Constructor for exception gov.nih.nci.common.search.RuntimeSearchException
 
RuntimeSearchException(String, Throwable) - Constructor for exception gov.nih.nci.common.search.RuntimeSearchException
 

S

SC2Query - Class in gov.nih.nci.common.persistence
 
SC2Query() - Constructor for class gov.nih.nci.common.persistence.SC2Query
 
scale - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
DOCUMENT ME
scale - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
DOCUMENT ME
scaleId - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
The internal ID of the associated scale object.
scaleId - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
The internal ID of the associated scale object.
SCNameResolver - Class in gov.nih.nci.mageom.search
 
SCNameResolver() - Constructor for class gov.nih.nci.mageom.search.SCNameResolver
 
search(SearchCriteria) - Method in class gov.nih.nci.common.persistence.DefaultSearchCriteriaHandler
 
search(SearchCriteria) - Method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
search(SearchCriteria) - Method in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy
 
search(SearchCriteria) - Method in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerRemote
 
search(SearchCriteria) - Method in interface gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerRemoteIF
 
search() - Method in interface gov.nih.nci.common.search.Searchable
 
search(SearchCriteria) - Method in interface gov.nih.nci.common.search.SearchCriteriaHandler
 
search() - Method in interface gov.nih.nci.mageom.search.EnhancedSearchCriteria
 
search() - Method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
Searchable - Interface in gov.nih.nci.common.search
 
searchArrayDesigns(ArrayDesignSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns an array of ArrayDesign objects that satisfy the given ArrayDesignSearchCriteria.
searchArrayGroups(ArrayGroupSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Returns an array of ArrayGroup objects that satisfy the given ArrayGroupSearchCriteria.
searchArrayManufactureDeviations(ArrayManufactureDeviationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Returns an array of ArrayManufactureDeviation objects that satisfy the given ArrayManufactureDeviationSearchCriteria.
searchArrayManufactures(ArrayManufactureSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns an array of ArrayManufacture objects that satisfy the given ArrayManufactureSearchCriteria.
searchArrays(ArraySearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Returns an array of Array objects that satisfy the given ArraySearchCriteria.
searchAudits(AuditSearchCriteria) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Returns an array of Audit objects that satisfy the given AuditSearchCriteria.
searchBibliographicReferences(BibliographicReferenceSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Returns an array of BibliographicReference objects that satisfy the given BibliographicReferenceSearchCriteria.
searchBioAssayCreations(BioAssayCreationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Returns an array of BioAssayCreation objects that satisfy the given BioAssayCreationSearchCriteria.
searchBioAssayDataClusters(BioAssayDataClusterSearchCriteria) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
Returns an array of BioAssayDataCluster objects that satisfy the given BioAssayDataClusterSearchCriteria.
searchBioAssayDatas(BioAssayDataSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Returns an array of BioAssayData objects that satisfy the given BioAssayDataSearchCriteria.
searchBioAssayDatums(BioAssayDatumSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Returns an array of BioAssayDatum objects that satisfy the given BioAssayDatumSearchCriteria.
searchBioAssayDimensions(BioAssayDimensionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
Returns an array of BioAssayDimension objects that satisfy the given BioAssayDimensionSearchCriteria.
searchBioAssayMappings(BioAssayMappingSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
Returns an array of BioAssayMapping objects that satisfy the given BioAssayMappingSearchCriteria.
searchBioAssayMaps(BioAssayMapSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
Returns an array of BioAssayMap objects that satisfy the given BioAssayMapSearchCriteria.
searchBioAssays(BioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Returns an array of BioAssay objects that satisfy the given BioAssaySearchCriteria.
searchBioAssayTreatments(BioAssayTreatmentSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
Returns an array of BioAssayTreatment objects that satisfy the given BioAssayTreatmentSearchCriteria.
searchBioDataCubes(BioDataCubeSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
Returns an array of BioDataCube objects that satisfy the given BioDataCubeSearchCriteria.
searchBioDataTupleses(BioDataTuplesSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
Returns an array of BioDataTuples objects that satisfy the given BioDataTuplesSearchCriteria.
searchBioDataValueses(BioDataValuesSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
Returns an array of BioDataValues objects that satisfy the given BioDataValuesSearchCriteria.
searchBioEvents(BioEventSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
Returns an array of BioEvent objects that satisfy the given BioEventSearchCriteria.
searchBioMaterialMeasurements(BioMaterialMeasurementSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
Returns an array of BioMaterialMeasurement objects that satisfy the given BioMaterialMeasurementSearchCriteria.
searchBioMaterials(BioMaterialSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Returns an array of BioMaterial objects that satisfy the given BioMaterialSearchCriteria.
searchBioSamples(BioSampleSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
Returns an array of BioSample objects that satisfy the given BioSampleSearchCriteria.
searchBioSequences(BioSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Returns an array of BioSequence objects that satisfy the given BioSequenceSearchCriteria.
searchBioSources(BioSourceSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
Returns an array of BioSource objects that satisfy the given BioSourceSearchCriteria.
searchChannels(ChannelSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
Returns an array of Channel objects that satisfy the given ChannelSearchCriteria.
searchCompositeCompositeMaps(CompositeCompositeMapSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
Returns an array of CompositeCompositeMap objects that satisfy the given CompositeCompositeMapSearchCriteria.
searchCompositeGroups(CompositeGroupSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
Returns an array of CompositeGroup objects that satisfy the given CompositeGroupSearchCriteria.
searchCompositePositions(CompositePositionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
Returns an array of CompositePosition objects that satisfy the given CompositePositionSearchCriteria.
searchCompositeSequenceDimensions(CompositeSequenceDimensionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
Returns an array of CompositeSequenceDimension objects that satisfy the given CompositeSequenceDimensionSearchCriteria.
searchCompositeSequences(CompositeSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Returns an array of CompositeSequence objects that satisfy the given CompositeSequenceSearchCriteria.
searchCompoundMeasurements(CompoundMeasurementSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
Returns an array of CompoundMeasurement objects that satisfy the given CompoundMeasurementSearchCriteria.
searchCompounds(CompoundSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Returns an array of Compound objects that satisfy the given CompoundSearchCriteria.
searchConcentrationUnits(ConcentrationUnitSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
Returns an array of ConcentrationUnit objects that satisfy the given ConcentrationUnitSearchCriteria.
searchConfidenceIndicators(ConfidenceIndicatorSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
Returns an array of ConfidenceIndicator objects that satisfy the given ConfidenceIndicatorSearchCriteria.
searchContacts(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Returns an array of Contact objects that satisfy the given ContactSearchCriteria.
SearchCriteriaFactory - Class in gov.nih.nci.mageom.search
 
SearchCriteriaFactory() - Constructor for class gov.nih.nci.mageom.search.SearchCriteriaFactory
 
SearchCriteriaHandler - Interface in gov.nih.nci.common.search
 
searchDatabaseEntries(DatabaseEntrySearchCriteria) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Returns an array of DatabaseEntry objects that satisfy the given DatabaseEntrySearchCriteria.
searchDatabases(DatabaseSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Returns an array of Database objects that satisfy the given DatabaseSearchCriteria.
searchDerivedBioAssayDatas(DerivedBioAssayDataSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
Returns an array of DerivedBioAssayData objects that satisfy the given DerivedBioAssayDataSearchCriteria.
searchDerivedBioAssays(DerivedBioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Returns an array of DerivedBioAssay objects that satisfy the given DerivedBioAssaySearchCriteria.
searchDerivedSignals(DerivedSignalSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
Returns an array of DerivedSignal objects that satisfy the given DerivedSignalSearchCriteria.
searchDescribables(DescribableSearchCriteria) - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Returns an array of Describable objects that satisfy the given DescribableSearchCriteria.
searchDescriptions(DescriptionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Returns an array of Description objects that satisfy the given DescriptionSearchCriteria.
searchDesignElementDimensions(DesignElementDimensionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
Returns an array of DesignElementDimension objects that satisfy the given DesignElementDimensionSearchCriteria.
searchDesignElementGroups(DesignElementGroupSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
Returns an array of DesignElementGroup objects that satisfy the given DesignElementGroupSearchCriteria.
searchDesignElementMappings(DesignElementMappingSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
Returns an array of DesignElementMapping objects that satisfy the given DesignElementMappingSearchCriteria.
searchDesignElementMaps(DesignElementMapSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
Returns an array of DesignElementMap objects that satisfy the given DesignElementMapSearchCriteria.
searchDesignElements(DesignElementSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
Returns an array of DesignElement objects that satisfy the given DesignElementSearchCriteria.
searchDistanceUnits(DistanceUnitSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
Returns an array of DistanceUnit objects that satisfy the given DistanceUnitSearchCriteria.
searchErrors(ErrorSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
Returns an array of Error objects that satisfy the given ErrorSearchCriteria.
searchExpectedValues(ExpectedValueSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
Returns an array of ExpectedValue objects that satisfy the given ExpectedValueSearchCriteria.
searchExperimentalFactors(ExperimentalFactorSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Returns an array of ExperimentalFactor objects that satisfy the given ExperimentalFactorSearchCriteria.
searchExperimentDesigns(ExperimentDesignSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Returns an array of ExperimentDesign objects that satisfy the given ExperimentDesignSearchCriteria.
searchExperiments(ExperimentSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns an array of Experiment objects that satisfy the given ExperimentSearchCriteria.
searchExtendables(ExtendableSearchCriteria) - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
Returns an array of Extendable objects that satisfy the given ExtendableSearchCriteria.
searchExternalReferences(ExternalReferenceSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Returns an array of ExternalReference objects that satisfy the given ExternalReferenceSearchCriteria.
searchFactorValues(FactorValueSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
Returns an array of FactorValue objects that satisfy the given FactorValueSearchCriteria.
searchFaileds(FailedSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
Returns an array of Failed objects that satisfy the given FailedSearchCriteria.
searchFeatureDefects(FeatureDefectSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
Returns an array of FeatureDefect objects that satisfy the given FeatureDefectSearchCriteria.
searchFeatureDimensions(FeatureDimensionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
Returns an array of FeatureDimension objects that satisfy the given FeatureDimensionSearchCriteria.
searchFeatureExtractions(FeatureExtractionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
Returns an array of FeatureExtraction objects that satisfy the given FeatureExtractionSearchCriteria.
searchFeatureGroups(FeatureGroupSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Returns an array of FeatureGroup objects that satisfy the given FeatureGroupSearchCriteria.
searchFeatureInformations(FeatureInformationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
Returns an array of FeatureInformation objects that satisfy the given FeatureInformationSearchCriteria.
searchFeatureLocations(FeatureLocationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
Returns an array of FeatureLocation objects that satisfy the given FeatureLocationSearchCriteria.
searchFeatureReporterMaps(FeatureReporterMapSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
Returns an array of FeatureReporterMap objects that satisfy the given FeatureReporterMapSearchCriteria.
searchFeatures(FeatureSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Returns an array of Feature objects that satisfy the given FeatureSearchCriteria.
searchFiducials(FiducialSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
Returns an array of Fiducial objects that satisfy the given FiducialSearchCriteria.
searchHardwareApplications(HardwareApplicationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
Returns an array of HardwareApplication objects that satisfy the given HardwareApplicationSearchCriteria.
searchHardwares(HardwareSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Returns an array of Hardware objects that satisfy the given HardwareSearchCriteria.
searchHybridizations(HybridizationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
Returns an array of Hybridization objects that satisfy the given HybridizationSearchCriteria.
searchIdentifiables(IdentifiableSearchCriteria) - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
Returns an array of Identifiable objects that satisfy the given IdentifiableSearchCriteria.
searchImageAcquisitions(ImageAcquisitionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
Returns an array of ImageAcquisition objects that satisfy the given ImageAcquisitionSearchCriteria.
searchImages(ImageSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Returns an array of Image objects that satisfy the given ImageSearchCriteria.
searchLabeledExtracts(LabeledExtractSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
Returns an array of LabeledExtract objects that satisfy the given LabeledExtractSearchCriteria.
searchManufactureLIMSBiomaterials(ManufactureLIMSBiomaterialSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
Returns an array of ManufactureLIMSBiomaterial objects that satisfy the given ManufactureLIMSBiomaterialSearchCriteria.
searchManufactureLIMSs(ManufactureLIMSSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Returns an array of ManufactureLIMS objects that satisfy the given ManufactureLIMSSearchCriteria.
searchMaps(MapSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
Returns an array of Map objects that satisfy the given MapSearchCriteria.
searchMassUnits(MassUnitSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
Returns an array of MassUnit objects that satisfy the given MassUnitSearchCriteria.
searchMeasuredBioAssayDatas(MeasuredBioAssayDataSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
Returns an array of MeasuredBioAssayData objects that satisfy the given MeasuredBioAssayDataSearchCriteria.
searchMeasuredBioAssays(MeasuredBioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
Returns an array of MeasuredBioAssay objects that satisfy the given MeasuredBioAssaySearchCriteria.
searchMeasuredSignals(MeasuredSignalSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
Returns an array of MeasuredSignal objects that satisfy the given MeasuredSignalSearchCriteria.
searchMeasurements(MeasurementSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Returns an array of Measurement objects that satisfy the given MeasurementSearchCriteria.
searchMismatchInformations(MismatchInformationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Returns an array of MismatchInformation objects that satisfy the given MismatchInformationSearchCriteria.
searchNameValueTypes(NameValueTypeSearchCriteria) - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Returns an array of NameValueType objects that satisfy the given NameValueTypeSearchCriteria.
searchNodeContentses(NodeContentsSearchCriteria) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
Returns an array of NodeContents objects that satisfy the given NodeContentsSearchCriteria.
searchNodes(NodeSearchCriteria) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Returns an array of Node objects that satisfy the given NodeSearchCriteria.
searchNodeValues(NodeValueSearchCriteria) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Returns an array of NodeValue objects that satisfy the given NodeValueSearchCriteria.
searchOntologyEntries(OntologyEntrySearchCriteria) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Returns an array of OntologyEntry objects that satisfy the given OntologyEntrySearchCriteria.
searchOrganizations(OrganizationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
Returns an array of Organization objects that satisfy the given OrganizationSearchCriteria.
searchParameterizableApplications(ParameterizableApplicationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
Returns an array of ParameterizableApplication objects that satisfy the given ParameterizableApplicationSearchCriteria.
searchParameterizables(ParameterizableSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Returns an array of Parameterizable objects that satisfy the given ParameterizableSearchCriteria.
searchParameters(ParameterSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
Returns an array of Parameter objects that satisfy the given ParameterSearchCriteria.
searchParameterValues(ParameterValueSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
Returns an array of ParameterValue objects that satisfy the given ParameterValueSearchCriteria.
searchPersons(PersonSearchCriteria) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Returns an array of Person objects that satisfy the given PersonSearchCriteria.
searchPhysicalArrayDesigns(PhysicalArrayDesignSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
Returns an array of PhysicalArrayDesign objects that satisfy the given PhysicalArrayDesignSearchCriteria.
searchPhysicalBioAssays(PhysicalBioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Returns an array of PhysicalBioAssay objects that satisfy the given PhysicalBioAssaySearchCriteria.
searchPositionDeltas(PositionDeltaSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Returns an array of PositionDelta objects that satisfy the given PositionDeltaSearchCriteria.
searchPositions(PositionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
Returns an array of Position objects that satisfy the given PositionSearchCriteria.
searchPresentAbsents(PresentAbsentSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
Returns an array of PresentAbsent objects that satisfy the given PresentAbsentSearchCriteria.
searchProtocolApplications(ProtocolApplicationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Returns an array of ProtocolApplication objects that satisfy the given ProtocolApplicationSearchCriteria.
searchProtocols(ProtocolSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Returns an array of Protocol objects that satisfy the given ProtocolSearchCriteria.
searchPValues(PValueSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
Returns an array of PValue objects that satisfy the given PValueSearchCriteria.
searchQuantitationTypeDimensions(QuantitationTypeDimensionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
Returns an array of QuantitationTypeDimension objects that satisfy the given QuantitationTypeDimensionSearchCriteria.
searchQuantitationTypeMappings(QuantitationTypeMappingSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
Returns an array of QuantitationTypeMapping objects that satisfy the given QuantitationTypeMappingSearchCriteria.
searchQuantitationTypeMaps(QuantitationTypeMapSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
Returns an array of QuantitationTypeMap objects that satisfy the given QuantitationTypeMapSearchCriteria.
searchQuantitationTypes(QuantitationTypeSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Returns an array of QuantitationType objects that satisfy the given QuantitationTypeSearchCriteria.
searchQuantityUnits(QuantityUnitSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
Returns an array of QuantityUnit objects that satisfy the given QuantityUnitSearchCriteria.
searchRatios(RatioSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
Returns an array of Ratio objects that satisfy the given RatioSearchCriteria.
searchReporterCompositeMaps(ReporterCompositeMapSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
Returns an array of ReporterCompositeMap objects that satisfy the given ReporterCompositeMapSearchCriteria.
searchReporterDimensions(ReporterDimensionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
Returns an array of ReporterDimension objects that satisfy the given ReporterDimensionSearchCriteria.
searchReporterGroups(ReporterGroupSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
Returns an array of ReporterGroup objects that satisfy the given ReporterGroupSearchCriteria.
searchReporterPositions(ReporterPositionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
Returns an array of ReporterPosition objects that satisfy the given ReporterPositionSearchCriteria.
searchReporters(ReporterSearchCriteria) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Returns an array of Reporter objects that satisfy the given ReporterSearchCriteria.
searchSecurities(SecuritySearchCriteria) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Returns an array of Security objects that satisfy the given SecuritySearchCriteria.
searchSecurityGroups(SecurityGroupSearchCriteria) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
Returns an array of SecurityGroup objects that satisfy the given SecurityGroupSearchCriteria.
searchSeqFeatureLocations(SeqFeatureLocationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Returns an array of SeqFeatureLocation objects that satisfy the given SeqFeatureLocationSearchCriteria.
searchSeqFeatures(SeqFeatureSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
Returns an array of SeqFeature objects that satisfy the given SeqFeatureSearchCriteria.
searchSequencePositions(SequencePositionSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
Returns an array of SequencePosition objects that satisfy the given SequencePositionSearchCriteria.
searchSoftwareApplications(SoftwareApplicationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
Returns an array of SoftwareApplication objects that satisfy the given SoftwareApplicationSearchCriteria.
searchSoftwares(SoftwareSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Returns an array of Software objects that satisfy the given SoftwareSearchCriteria.
searchSpecializedQuantitationTypes(SpecializedQuantitationTypeSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
Returns an array of SpecializedQuantitationType objects that satisfy the given SpecializedQuantitationTypeSearchCriteria.
searchStandardQuantitationTypes(StandardQuantitationTypeSearchCriteria) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
Returns an array of StandardQuantitationType objects that satisfy the given StandardQuantitationTypeSearchCriteria.
searchTemperatureUnits(TemperatureUnitSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
Returns an array of TemperatureUnit objects that satisfy the given TemperatureUnitSearchCriteria.
searchTimeUnits(TimeUnitSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
Returns an array of TimeUnit objects that satisfy the given TimeUnitSearchCriteria.
searchTransformations(TransformationSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Returns an array of Transformation objects that satisfy the given TransformationSearchCriteria.
searchTreatments(TreatmentSearchCriteria) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Returns an array of Treatment objects that satisfy the given TreatmentSearchCriteria.
searchUnits(UnitSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
Returns an array of Unit objects that satisfy the given UnitSearchCriteria.
searchVolumeUnits(VolumeUnitSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
Returns an array of VolumeUnit objects that satisfy the given VolumeUnitSearchCriteria.
searchZoneDefects(ZoneDefectSearchCriteria) - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
Returns an array of ZoneDefect objects that satisfy the given ZoneDefectSearchCriteria.
searchZoneGroups(ZoneGroupSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Returns an array of ZoneGroup objects that satisfy the given ZoneGroupSearchCriteria.
searchZoneLayouts(ZoneLayoutSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Returns an array of ZoneLayout objects that satisfy the given ZoneLayoutSearchCriteria.
searchZones(ZoneSearchCriteria) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Returns an array of Zone objects that satisfy the given ZoneSearchCriteria.
securedElementId - Variable in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
SecureSession - Interface in gov.nih.nci.common.search.session
 
SecureSessionFactory - Class in gov.nih.nci.common.search.session
 
SecureSessionFactory() - Constructor for class gov.nih.nci.common.search.session.SecureSessionFactory
 
SecureSessionImpl - Class in gov.nih.nci.common.search.session
 
SecureSessionImpl() - Constructor for class gov.nih.nci.common.search.session.SecureSessionImpl
 
SecureSessionImpl(SecureSessionImpl) - Constructor for class gov.nih.nci.common.search.session.SecureSessionImpl
 
SecureSessionManager - Interface in gov.nih.nci.common.search.session
 
SecureSessionManagerFactory - Class in gov.nih.nci.common.search.session
 
SecureSessionManagerImpl - Class in gov.nih.nci.common.search.session
 
SecureSessionManagerImpl() - Constructor for class gov.nih.nci.common.search.session.SecureSessionManagerImpl
 
SecureSessionPersistence - Class in gov.nih.nci.common.persistence
 
Security - Interface in gov.nih.nci.mageom.domain.AuditAndSecurity
Permission information for an object as to ownership, write and read permissions.
security - Variable in class gov.nih.nci.mageom.domain.impl.DescribableImpl
DOCUMENT ME
SecurityBean - Class in gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl
 
SecurityBean() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.SecurityBean
 
SecurityFilter - Class in gov.nih.nci.common.persistence
 
SecurityFilter() - Constructor for class gov.nih.nci.common.persistence.SecurityFilter
 
SecurityGroup - Interface in gov.nih.nci.mageom.domain.AuditAndSecurity
Groups contacts together based on their security privileges.
SecurityGroupContact - Class in gov.nih.nci.mageom.persistence.ojb.mn
 
SecurityGroupContact() - Constructor for class gov.nih.nci.mageom.persistence.ojb.mn.SecurityGroupContact
 
SecurityGroupImpl - Class in gov.nih.nci.mageom.domain.AuditAndSecurity.impl
Groups contacts together based on their security privileges.
SecurityGroupImpl() - Constructor for class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
Default constructor
securityGroups - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
DOCUMENT ME
securityGroupsCount - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
The count of SecurityGroup objects.
SecurityGroupSearchCriteria - Interface in gov.nih.nci.mageom.search.AuditAndSecurity
Represents a query for SecurityGroup objects.
SecurityGroupSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.AuditAndSecurity.impl
Represents a query for SecurityGroup objects.
SecurityGroupSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
 
SECURITYGROUPSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.SecurityGroup.id.
securityId - Variable in class gov.nih.nci.mageom.domain.impl.DescribableImpl
The internal ID of the associated security object.
SECURITYID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Security.id.
SecurityImpl - Class in gov.nih.nci.mageom.domain.AuditAndSecurity.impl
Permission information for an object as to ownership, write and read permissions.
SecurityImpl() - Constructor for class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Default constructor
SecurityManagerFactory - Class in gov.nih.nci.common.persistence
 
SecuritySearchCriteria - Interface in gov.nih.nci.mageom.search.AuditAndSecurity
Represents a query for Security objects.
SecuritySearchCriteriaImpl - Class in gov.nih.nci.mageom.search.AuditAndSecurity.impl
Represents a query for Security objects.
SecuritySearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
selectClassDescriptor(Map) - Method in class gov.nih.nci.mageom.util.MAGERowReader
 
SeqFeature - Interface in gov.nih.nci.mageom.domain.BioSequence
Represents, in general, what would be a GenBank Feature Table annotation for a sequence.
SeqFeatureImpl - Class in gov.nih.nci.mageom.domain.BioSequence.impl
Represents, in general, what would be a GenBank Feature Table annotation for a sequence.
SeqFeatureImpl() - Constructor for class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
Default constructor
SeqFeatureLocation - Interface in gov.nih.nci.mageom.domain.BioSequence
The location of the SeqFeature annotation.
SeqFeatureLocationImpl - Class in gov.nih.nci.mageom.domain.BioSequence.impl
The location of the SeqFeature annotation.
SeqFeatureLocationImpl() - Constructor for class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Default constructor
SeqFeatureLocationSearchCriteria - Interface in gov.nih.nci.mageom.search.BioSequence
Represents a query for SeqFeatureLocation objects.
SeqFeatureLocationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioSequence.impl
Represents a query for SeqFeatureLocation objects.
SeqFeatureLocationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
 
seqFeatures - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
DOCUMENT ME
seqFeaturesCount - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
The count of SeqFeature objects.
SeqFeatureSearchCriteria - Interface in gov.nih.nci.mageom.search.BioSequence
Represents a query for SeqFeature objects.
SeqFeatureSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioSequence.impl
Represents a query for SeqFeature objects.
SeqFeatureSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
 
sequence - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
The actual components of the sequence, for instance, for DNA a string consisting of A,T,C and G.
sequenceDatabases - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
DOCUMENT ME
sequenceDatabasesCount - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
The count of DatabaseEntry objects.
SequencePosition - Interface in gov.nih.nci.mageom.domain.BioSequence
Designates the position of the Feature in its BioSequence.
SequencePositionImpl - Class in gov.nih.nci.mageom.domain.BioSequence.impl
Designates the position of the Feature in its BioSequence.
SequencePositionImpl() - Constructor for class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
Default constructor
SequencePositionSearchCriteria - Interface in gov.nih.nci.mageom.search.BioSequence
Represents a query for SequencePosition objects.
SequencePositionSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioSequence.impl
Represents a query for SequencePosition objects.
SequencePositionSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
serialNumber - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
Manufacturer's identifier for the Hardware.
SERIALNUMBER_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.HardwareApplication.serialNumber.
SessionException - Exception in gov.nih.nci.common.search.session
 
SessionException() - Constructor for exception gov.nih.nci.common.search.session.SessionException
 
SessionException(String) - Constructor for exception gov.nih.nci.common.search.session.SessionException
 
SessionException(Throwable) - Constructor for exception gov.nih.nci.common.search.session.SessionException
 
SessionException(String, Throwable) - Constructor for exception gov.nih.nci.common.search.session.SessionException
 
SessionObject - Interface in gov.nih.nci.common.search.session
 
setAccession(String) - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Sets the accession attribute.
setAccession(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Sets the accession attribute.
setAccession(String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.accession
setAccession(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.accession
setAccession(String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setAccession(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setAccessions(DatabaseEntry[]) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the accessions attribute.
setAccessions(DatabaseEntry[]) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the accessions attribute.
setAccessionVersion(String) - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Sets the accessionVersion attribute.
setAccessionVersion(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Sets the accessionVersion attribute.
setAccessionVersion(String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.accessionVersion
setAccessionVersion(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.accessionVersion
setAccessionVersion(String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setAccessionVersion(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setAction(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Audit
Sets the action attribute.
setAction(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Sets the action attribute.
setAction(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Sets the action attribute.
setAction(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Sets the action attribute.
setAction(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.action
setAction(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.action
setAction(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setAction(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setActionMeasurement(Measurement) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Sets the actionMeasurement attribute.
setActionMeasurement(Measurement) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Sets the actionMeasurement attribute.
setActivityDate(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Sets the activityDate attribute.
setActivityDate(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Sets the activityDate attribute.
setActivityDate(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setActivityDate(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setActivityDate(String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ProtocolApplication.activityDate
setActivityDate(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ProtocolApplication.activityDate
setAddress(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Sets the address attribute.
setAddress(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Sets the address attribute.
setAddress(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.address
setAddress(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.address
setAddress(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setAddress(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setAdjustments(ZoneDefect[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufactureDeviation
Sets the adjustments attribute.
setAdjustments(ZoneDefect[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Sets the adjustments attribute.
setAffiliation(Organization) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Sets the affiliation attribute.
setAffiliation(Organization) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Person
Sets the affiliation attribute.
setAffiliationCriteria(OrganizationSearchCriteria) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setAffiliationCriteria(OrganizationSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setAffiliationCriteria(OrganizationSearchCriteria) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Constrains the search for Person objects to those associated with Organization objects by the association and selected by the given OrganizationSearchCriteria.
setAffiliationCriteria(OrganizationSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Constrains the search for Person objects to those associated with Organization objects by the association and selected by the given OrganizationSearchCriteria.
setAffiliationId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setAffiliationId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setAffiliationId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id
setAffiliationId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id
setAnalysisResults(BioAssayDataCluster[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Sets the analysisResults attribute.
setAnalysisResults(BioAssayDataCluster[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Sets the analysisResults attribute.
setAnalysisResultsCriteria(BioAssayDataClusterSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Constrains the search for Experiment objects to those associated with BioAssayDataCluster objects by the association and selected by the given BioAssayDataClusterSearchCriteria.
setAnalysisResultsCriteria(BioAssayDataClusterSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Constrains the search for Experiment objects to those associated with BioAssayDataCluster objects by the association and selected by the given BioAssayDataClusterSearchCriteria.
setAnalysisResultsCriteria(BioAssayDataClusterSearchCriteria) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setAnalysisResultsCriteria(BioAssayDataClusterSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setAnalysisResultsId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster.id
setAnalysisResultsId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster.id
setAnalysisResultsId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setAnalysisResultsId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setAnnotations(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.Description.Description
Sets the annotations attribute.
setAnnotations(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Sets the annotations attribute.
setAnnotations(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor
Sets the annotations attribute.
setAnnotations(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Sets the annotations attribute.
setArray(Array) - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayCreation
Sets the array attribute.
setArray(Array) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Sets the array attribute.
setArrayAccess(PermissionObject[]) - Method in class gov.nih.nci.mageom.util.PermissionObject
Sets the data permissions for an array of objects this objects permissons
setArrayDesign(ArrayDesign) - Method in interface gov.nih.nci.mageom.domain.Array.Array
Sets the arrayDesign attribute.
setArrayDesign(ArrayDesign) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Sets the arrayDesign attribute.
setArrayDesignCriteria(ArrayDesignSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Constrains the search for Array objects to those associated with ArrayDesign objects by the association and selected by the given ArrayDesignSearchCriteria.
setArrayDesignCriteria(ArrayDesignSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Constrains the search for Array objects to those associated with ArrayDesign objects by the association and selected by the given ArrayDesignSearchCriteria.
setArrayDesignCriteria(ArrayDesignSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayDesignCriteria(ArrayDesignSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayDesignId(Long) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setArrayDesignId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.id
setArrayDesignId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.id
setArrayDesignId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayDesignId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayDesignId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
setArrayDesignIds(Long[]) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummarySearchCriteria
Limits results to those with associated ArrayDesign.id(s) that match.
setArrayDesignIds(Long[]) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl
 
setArrayDesignName(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setArrayDesignName(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
setArrayDesignNames(String[]) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummarySearchCriteria
Limits results to those with associated ArrayDesign.name(s) that match.
setArrayDesignNames(String[]) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl
 
setArrayGroup(ArrayGroup) - Method in interface gov.nih.nci.mageom.domain.Array.Array
Sets the arrayGroup attribute.
setArrayGroup(ArrayGroup) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Sets the arrayGroup attribute.
setArrayGroupCriteria(ArrayGroupSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Constrains the search for Array objects to those associated with ArrayGroup objects by the association and selected by the given ArrayGroupSearchCriteria.
setArrayGroupCriteria(ArrayGroupSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Constrains the search for Array objects to those associated with ArrayGroup objects by the association and selected by the given ArrayGroupSearchCriteria.
setArrayGroupCriteria(ArrayGroupSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayGroupCriteria(ArrayGroupSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayGroupId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.id
setArrayGroupId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.id
setArrayGroupId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayGroupId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayIdentifier(String) - Method in interface gov.nih.nci.mageom.domain.Array.Array
Sets the arrayIdentifier attribute.
setArrayIdentifier(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Sets the arrayIdentifier attribute.
setArrayIdentifier(String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayIdentifier
setArrayIdentifier(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayIdentifier
setArrayIdentifier(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayIdentifier(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayManufactureDeviations(ArrayManufactureDeviation[]) - Method in interface gov.nih.nci.mageom.domain.Array.Array
Sets the arrayManufactureDeviations attribute.
setArrayManufactureDeviations(ArrayManufactureDeviation[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Sets the arrayManufactureDeviations attribute.
setArrayManufacturers(Contact[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Sets the arrayManufacturers attribute.
setArrayManufacturers(Contact[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Sets the arrayManufacturers attribute.
setArrayManufacturersCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Constrains the search for ArrayManufacture objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setArrayManufacturersCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Constrains the search for ArrayManufacture objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setArrayManufacturersCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setArrayManufacturersCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setArrayManufacturersId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setArrayManufacturersId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setArrayManufacturersId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setArrayManufacturersId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setArrays(Array[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the arrays attribute.
setArrays(Array[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Sets the arrays attribute.
setArrays(Array[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the arrays attribute.
setArrays(Array[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Sets the arrays attribute.
setArraySpacingX(Float) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the arraySpacingX attribute.
setArraySpacingX(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the arraySpacingX attribute.
setArraySpacingX(Float) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.arraySpacingX
setArraySpacingX(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.arraySpacingX
setArraySpacingX(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setArraySpacingX(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setArraySpacingY(Float) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the arraySpacingY attribute.
setArraySpacingY(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the arraySpacingY attribute.
setArraySpacingY(Float) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.arraySpacingY
setArraySpacingY(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.arraySpacingY
setArraySpacingY(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setArraySpacingY(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setArrayXOrigin(Float) - Method in interface gov.nih.nci.mageom.domain.Array.Array
Sets the arrayXOrigin attribute.
setArrayXOrigin(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Sets the arrayXOrigin attribute.
setArrayXOrigin(Float) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayXOrigin
setArrayXOrigin(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayXOrigin
setArrayXOrigin(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayXOrigin(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayYOrigin(Float) - Method in interface gov.nih.nci.mageom.domain.Array.Array
Sets the arrayYOrigin attribute.
setArrayYOrigin(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Sets the arrayYOrigin attribute.
setArrayYOrigin(Float) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayYOrigin
setArrayYOrigin(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.arrayYOrigin
setArrayYOrigin(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setArrayYOrigin(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setAssociations(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Sets the associations attribute.
setAssociations(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Sets the associations attribute.
setAuditTrail(Audit[]) - Method in interface gov.nih.nci.mageom.domain.Describable
Sets the auditTrail attribute.
setAuditTrail(Audit[]) - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Sets the auditTrail attribute.
setAuthors(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the authors attribute.
setAuthors(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the authors attribute.
setAuthors(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.authors
setAuthors(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.authors
setAuthors(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setAuthors(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setBarcode(String) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the barcode attribute.
setBarcode(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the barcode attribute.
setBarcode(String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.barcode
setBarcode(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.barcode
setBarcode(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setBarcode(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setBasis(String) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
Sets the basis attribute.
setBasis(String) - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeature
Sets the basis attribute.
setBasis(String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
 
setBasis(String, String, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
 
setBasis(String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeature.basis
setBasis(String, String, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeature.basis
setBibliographicReferences(BibliographicReference[]) - Method in interface gov.nih.nci.mageom.domain.Description.Description
Sets the bibliographicReferences attribute.
setBibliographicReferences(BibliographicReference[]) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Sets the bibliographicReferences attribute.
setBioAssay(BioAssay) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDatum
Sets the bioAssay attribute.
setBioAssay(BioAssay) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Sets the bioAssay attribute.
setBioAssayCreation(BioAssayCreation) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Sets the bioAssayCreation attribute.
setBioAssayCreation(BioAssayCreation) - Method in interface gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay
Sets the bioAssayCreation attribute.
setBioAssayCriteria(BioAssaySearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Constrains the search for BioAssayDatum objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setBioAssayCriteria(BioAssaySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Constrains the search for BioAssayDatum objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setBioAssayCriteria(BioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setBioAssayCriteria(BioAssaySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setBioAssayData(BioAssayData[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Sets the bioAssayData attribute.
setBioAssayData(BioAssayData[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Sets the bioAssayData attribute.
setBioAssayDataCriteria(BioAssayDataSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Constrains the search for Experiment objects to those associated with BioAssayData objects by the association and selected by the given BioAssayDataSearchCriteria.
setBioAssayDataCriteria(BioAssayDataSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Constrains the search for Experiment objects to those associated with BioAssayData objects by the association and selected by the given BioAssayDataSearchCriteria.
setBioAssayDataCriteria(BioAssayDataSearchCriteria) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setBioAssayDataCriteria(BioAssayDataSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setBioAssayDataId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
setBioAssayDataId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
setBioAssayDataId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setBioAssayDataId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setBioAssayDataSources(BioAssayData[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Sets the bioAssayDataSources attribute.
setBioAssayDataSources(BioAssayData[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Sets the bioAssayDataSources attribute.
setBioAssayDataSourcesCriteria(BioAssayDataSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
 
setBioAssayDataSourcesCriteria(BioAssayDataSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
 
setBioAssayDataSourcesCriteria(BioAssayDataSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
Constrains the search for Transformation objects to those associated with BioAssayData objects by the association and selected by the given BioAssayDataSearchCriteria.
setBioAssayDataSourcesCriteria(BioAssayDataSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
Constrains the search for Transformation objects to those associated with BioAssayData objects by the association and selected by the given BioAssayDataSearchCriteria.
setBioAssayDataSourcesId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
 
setBioAssayDataSourcesId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
 
setBioAssayDataSourcesId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
setBioAssayDataSourcesId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
setBioAssayDimension(BioAssayDimension) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Sets the bioAssayDimension attribute.
setBioAssayDimension(BioAssayDimension) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Sets the bioAssayDimension attribute.
setBioAssayDimension(BioAssayDimension) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
Sets the bioAssayDimension attribute.
setBioAssayDimension(BioAssayDimension) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeContents
Sets the bioAssayDimension attribute.
setBioAssayFactorValues(FactorValue[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssay
Sets the bioAssayFactorValues attribute.
setBioAssayFactorValues(FactorValue[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Sets the bioAssayFactorValues attribute.
setBioAssayId(Long) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
setBioAssayId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setBioAssayId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setBioAssayId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setBioAssayId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setBioAssayMapping(BioAssayMapping) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Sets the bioAssayMapping attribute.
setBioAssayMapping(BioAssayMapping) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Sets the bioAssayMapping attribute.
setBioAssayMaps(BioAssayMap[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayMapping
Sets the bioAssayMaps attribute.
setBioAssayMaps(BioAssayMap[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
Sets the bioAssayMaps attribute.
setBioAssayMapsCriteria(BioAssayMapSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
Constrains the search for BioAssayMapping objects to those associated with BioAssayMap objects by the association and selected by the given BioAssayMapSearchCriteria.
setBioAssayMapsCriteria(BioAssayMapSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
Constrains the search for BioAssayMapping objects to those associated with BioAssayMap objects by the association and selected by the given BioAssayMapSearchCriteria.
setBioAssayMapsCriteria(BioAssayMapSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
 
setBioAssayMapsCriteria(BioAssayMapSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
 
setBioAssayMapsId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap.id
setBioAssayMapsId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap.id
setBioAssayMapsId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
 
setBioAssayMapsId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
 
setBioAssayMapTarget(DerivedBioAssay) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap
Sets the bioAssayMapTarget attribute.
setBioAssayMapTarget(DerivedBioAssay) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
Sets the bioAssayMapTarget attribute.
setBioAssayMapTargetCriteria(DerivedBioAssaySearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Constrains the search for BioAssayMap objects to those associated with DerivedBioAssay objects by the association and selected by the given DerivedBioAssaySearchCriteria.
setBioAssayMapTargetCriteria(DerivedBioAssaySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Constrains the search for BioAssayMap objects to those associated with DerivedBioAssay objects by the association and selected by the given DerivedBioAssaySearchCriteria.
setBioAssayMapTargetCriteria(DerivedBioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setBioAssayMapTargetCriteria(DerivedBioAssaySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setBioAssayMapTargetId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay.id
setBioAssayMapTargetId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay.id
setBioAssayMapTargetId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setBioAssayMapTargetId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setBioAssays(BioAssay[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDimension
Sets the bioAssays attribute.
setBioAssays(BioAssay[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
Sets the bioAssays attribute.
setBioAssays(BioAssay[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Sets the bioAssays attribute.
setBioAssays(BioAssay[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Sets the bioAssays attribute.
setBioAssaysCriteria(BioAssaySearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
Constrains the search for BioAssayDimension objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setBioAssaysCriteria(BioAssaySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
Constrains the search for BioAssayDimension objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setBioAssaysCriteria(BioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
 
setBioAssaysCriteria(BioAssaySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
 
setBioAssaysCriteria(BioAssaySearchCriteria) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Constrains the search for Experiment objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setBioAssaysCriteria(BioAssaySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Constrains the search for Experiment objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setBioAssaysCriteria(BioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setBioAssaysCriteria(BioAssaySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setBioAssaysId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setBioAssaysId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setBioAssaysId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
 
setBioAssaysId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
 
setBioAssaysId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setBioAssaysId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setBioAssaysId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setBioAssaysId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setBioAssayTreatments(BioAssayTreatment[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Sets the bioAssayTreatments attribute.
setBioAssayTreatments(BioAssayTreatment[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay
Sets the bioAssayTreatments attribute.
setBioAssayTupleData(BioAssayDatum[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioDataTuples
Sets the bioAssayTupleData attribute.
setBioAssayTupleData(BioAssayDatum[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
Sets the bioAssayTupleData attribute.
setBioDataValues(BioDataValues) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Sets the bioDataValues attribute.
setBioDataValues(BioDataValues) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Sets the bioDataValues attribute.
setBiologicalCharacteristics(BioSequence[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeSequence
Sets the biologicalCharacteristics attribute.
setBiologicalCharacteristics(BioSequence[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Sets the biologicalCharacteristics attribute.
setBiologicalCharacteristicsCriteria(BioSequenceSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
Constrains the search for CompositeSequence objects to those associated with BioSequence objects by the association and selected by the given BioSequenceSearchCriteria.
setBiologicalCharacteristicsCriteria(BioSequenceSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
Constrains the search for CompositeSequence objects to those associated with BioSequence objects by the association and selected by the given BioSequenceSearchCriteria.
setBiologicalCharacteristicsCriteria(BioSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
 
setBiologicalCharacteristicsCriteria(BioSequenceSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
 
setBiologicalCharacteristicsId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id
setBiologicalCharacteristicsId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id
setBiologicalCharacteristicsId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
 
setBiologicalCharacteristicsId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
 
setBioMaterial(BioMaterial) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Sets the bioMaterial attribute.
setBioMaterial(BioMaterial) - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMS
Sets the bioMaterial attribute.
setBioMaterial(BioMaterial) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterialMeasurement
Sets the bioMaterial attribute.
setBioMaterial(BioMaterial) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
Sets the bioMaterial attribute.
setBioMaterialCriteria(BioMaterialSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setBioMaterialCriteria(BioMaterialSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setBioMaterialCriteria(BioMaterialSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Constrains the search for ManufactureLIMS objects to those associated with BioMaterial objects by the association and selected by the given BioMaterialSearchCriteria.
setBioMaterialCriteria(BioMaterialSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Constrains the search for ManufactureLIMS objects to those associated with BioMaterial objects by the association and selected by the given BioMaterialSearchCriteria.
setBioMaterialCriteria(BioMaterialSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
Constrains the search for BioMaterialMeasurement objects to those associated with BioMaterial objects by the association and selected by the given BioMaterialSearchCriteria.
setBioMaterialCriteria(BioMaterialSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
Constrains the search for BioMaterialMeasurement objects to those associated with BioMaterial objects by the association and selected by the given BioMaterialSearchCriteria.
setBioMaterialCriteria(BioMaterialSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
 
setBioMaterialCriteria(BioMaterialSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
 
setBioMaterialId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setBioMaterialId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setBioMaterialId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id
setBioMaterialId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id
setBioMaterialId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id
setBioMaterialId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.BioMaterial.id
setBioMaterialId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
 
setBioMaterialId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
 
setBioMaterialPlateCol(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
Sets the bioMaterialPlateCol attribute.
setBioMaterialPlateCol(String) - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial
Sets the bioMaterialPlateCol attribute.
setBioMaterialPlateCol(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
setBioMaterialPlateCol(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
setBioMaterialPlateCol(String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateCol
setBioMaterialPlateCol(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateCol
setBioMaterialPlateIdentifier(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
Sets the bioMaterialPlateIdentifier attribute.
setBioMaterialPlateIdentifier(String) - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial
Sets the bioMaterialPlateIdentifier attribute.
setBioMaterialPlateIdentifier(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
setBioMaterialPlateIdentifier(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
setBioMaterialPlateIdentifier(String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateIdentifier
setBioMaterialPlateIdentifier(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateIdentifier
setBioMaterialPlateRow(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
Sets the bioMaterialPlateRow attribute.
setBioMaterialPlateRow(String) - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial
Sets the bioMaterialPlateRow attribute.
setBioMaterialPlateRow(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
setBioMaterialPlateRow(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
setBioMaterialPlateRow(String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateRow
setBioMaterialPlateRow(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMSBiomaterial.bioMaterialPlateRow
setBioSourceIdentifiers(String[]) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioAssaySearchCriteria
Limits results to those with associated BioSource.identifier(s) that match.
setBioSourceIdentifiers(String[]) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.DerivedBioAssaySearchCriteriaImpl
 
setBioSourceIdentifiers(String[]) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.MeasuredBioAssaySearchCriteriaImpl
 
setBioSourceIdentifiers(String[]) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioAssaySearchCriteria
Limits results to those with associated BioSource.identifier(s) that match.
setBioSourceIdentifiers(String[]) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSearchCriteria
Limits results to those with associated BioSource.identifier that matches.
setBioSourceIdentifiers(String[]) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentFileSearchCriteriaImpl
 
setBioSourceNames(String[]) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioAssaySearchCriteria
Limits results to those with associated BioSource.name(s) that match.
setBioSourceNames(String[]) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.DerivedBioAssaySearchCriteriaImpl
 
setBioSourceNames(String[]) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.MeasuredBioAssaySearchCriteriaImpl
 
setBioSourceNames(String[]) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioAssaySearchCriteria
Limits results to those with associated BioSource.name(s) that match.
setBioSourceNames(String[]) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSearchCriteria
Limits results to those with associated BioSource.name that matches.
setBioSourceNames(String[]) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentFileSearchCriteriaImpl
 
setCaseInsensitive(boolean) - Method in interface gov.nih.nci.common.query.Criterion
 
setCaseInsensitive(boolean) - Method in class gov.nih.nci.common.query.impl.CriterionImpl
 
setCategory(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Sets the category attribute.
setCategory(String) - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Sets the category attribute.
setCategory(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor
Sets the category attribute.
setCategory(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Sets the category attribute.
setCategory(String) - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
setCategory(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
setCategory(String) - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.category
setCategory(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.category
setChannel(Channel) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Sets the channel attribute.
setChannel(Channel) - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Sets the channel attribute.
setChannelCriteria(ChannelSearchCriteria) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
setChannelCriteria(ChannelSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
setChannelCriteria(ChannelSearchCriteria) - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Constrains the search for QuantitationType objects to those associated with Channel objects by the association and selected by the given ChannelSearchCriteria.
setChannelCriteria(ChannelSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Constrains the search for QuantitationType objects to those associated with Channel objects by the association and selected by the given ChannelSearchCriteria.
setChannelId(Long) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
setChannelId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
setChannelId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
setChannelId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id
setChannelId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id
setChannels(Channel[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssay
Sets the channels attribute.
setChannels(Channel[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.Image
Sets the channels attribute.
setChannels(Channel[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Sets the channels attribute.
setChannels(Channel[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Sets the channels attribute.
setChannelsCriteria(ChannelSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
Constrains the search for BioAssay objects to those associated with Channel objects by the association and selected by the given ChannelSearchCriteria.
setChannelsCriteria(ChannelSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
Constrains the search for BioAssay objects to those associated with Channel objects by the association and selected by the given ChannelSearchCriteria.
setChannelsCriteria(ChannelSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
 
setChannelsCriteria(ChannelSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
 
setChannelsId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id
setChannelsId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Channel.id
setChannelsId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
 
setChannelsId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
 
setCharacteristics(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterial
Sets the characteristics attribute.
setCharacteristics(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Sets the characteristics attribute.
setChipPlatformType(String) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Limits results to those Experiments with ArrayDesign(s) having designProviders with a matching Organization.name
setChipPlatformType(String) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
setChromosomeName(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setChromosomeName(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setChromosomeValue(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setChromosomeValue(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setChromosomeValues(String[]) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummarySearchCriteria
Limits results to those with associated chromosome(s) that match.
setChromosomeValues(String[]) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl
 
setClusterBioAssayData(BioAssayData) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster
Sets the clusterBioAssayData attribute.
setClusterBioAssayData(BioAssayData) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
Sets the clusterBioAssayData attribute.
setClusterBioAssayDataCriteria(BioAssayDataSearchCriteria) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
Constrains the search for BioAssayDataCluster objects to those associated with BioAssayData objects by the association and selected by the given BioAssayDataSearchCriteria.
setClusterBioAssayDataCriteria(BioAssayDataSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
Constrains the search for BioAssayDataCluster objects to those associated with BioAssayData objects by the association and selected by the given BioAssayDataSearchCriteria.
setClusterBioAssayDataCriteria(BioAssayDataSearchCriteria) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
 
setClusterBioAssayDataCriteria(BioAssayDataSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
 
setClusterBioAssayDataId(Long) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
setClusterBioAssayDataId(Long, String) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.BioAssayData.id
setClusterBioAssayDataId(Long) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
 
setClusterBioAssayDataId(Long, String) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
 
setColumn(Integer) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Sets the column attribute.
setColumn(Integer) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Sets the column attribute.
setColumn(Integer) - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureLocation
Sets the column attribute.
setColumn(Integer) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
Sets the column attribute.
setColumn(Integer) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setColumn(Integer, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setColumn(Integer) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.column
setColumn(Integer, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.column
setColumn(Integer) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.column
setColumn(Integer, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.column
setColumn(Integer) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
setColumn(Integer, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
setComponentCompounds(CompoundMeasurement[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Compound
Sets the componentCompounds attribute.
setComponentCompounds(CompoundMeasurement[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Sets the componentCompounds attribute.
setComposite(CompositeSequence) - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositePosition
Sets the composite attribute.
setComposite(CompositeSequence) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
Sets the composite attribute.
setCompositeCompositeMaps(CompositeCompositeMap[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeSequence
Sets the compositeCompositeMaps attribute.
setCompositeCompositeMaps(CompositeCompositeMap[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Sets the compositeCompositeMaps attribute.
setCompositeCriteria(CompositeSequenceSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
Constrains the search for CompositePosition objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeCriteria(CompositeSequenceSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
Constrains the search for CompositePosition objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeCriteria(CompositeSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
 
setCompositeCriteria(CompositeSequenceSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
 
setCompositeGroups(CompositeGroup[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Sets the compositeGroups attribute.
setCompositeGroups(CompositeGroup[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Sets the compositeGroups attribute.
setCompositeGroupsCriteria(CompositeGroupSearchCriteria) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Constrains the search for ArrayDesign objects to those associated with CompositeGroup objects by the association and selected by the given CompositeGroupSearchCriteria.
setCompositeGroupsCriteria(CompositeGroupSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Constrains the search for ArrayDesign objects to those associated with CompositeGroup objects by the association and selected by the given CompositeGroupSearchCriteria.
setCompositeGroupsCriteria(CompositeGroupSearchCriteria) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setCompositeGroupsCriteria(CompositeGroupSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setCompositeGroupsId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.CompositeGroup.id
setCompositeGroupsId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.CompositeGroup.id
setCompositeGroupsId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setCompositeGroupsId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setCompositeId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
 
setCompositeId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
 
setCompositePositionSources(CompositePosition[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeCompositeMap
Sets the compositePositionSources attribute.
setCompositePositionSources(CompositePosition[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
Sets the compositePositionSources attribute.
setCompositeSequence(CompositeSequence) - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeCompositeMap
Sets the compositeSequence attribute.
setCompositeSequence(CompositeSequence) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
Sets the compositeSequence attribute.
setCompositeSequence(CompositeSequence) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
Sets the compositeSequence attribute.
setCompositeSequence(CompositeSequence) - Method in interface gov.nih.nci.mageom.domain.DesignElement.ReporterCompositeMap
Sets the compositeSequence attribute.
setCompositeSequenceCriteria(CompositeSequenceSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
Constrains the search for CompositeCompositeMap objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeSequenceCriteria(CompositeSequenceSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
Constrains the search for CompositeCompositeMap objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeSequenceCriteria(CompositeSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
 
setCompositeSequenceCriteria(CompositeSequenceSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
 
setCompositeSequenceCriteria(CompositeSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
 
setCompositeSequenceCriteria(CompositeSequenceSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
 
setCompositeSequenceCriteria(CompositeSequenceSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
Constrains the search for ReporterCompositeMap objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeSequenceCriteria(CompositeSequenceSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
Constrains the search for ReporterCompositeMap objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeSequenceId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeSequenceId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeSequenceId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
 
setCompositeSequenceId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
 
setCompositeSequenceId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
 
setCompositeSequenceId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
 
setCompositeSequenceId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeSequenceId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeSequences(CompositeSequence[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.CompositeGroup
Sets the compositeSequences attribute.
setCompositeSequences(CompositeSequence[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
Sets the compositeSequences attribute.
setCompositeSequences(CompositeSequence[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.CompositeSequenceDimension
Sets the compositeSequences attribute.
setCompositeSequences(CompositeSequence[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
Sets the compositeSequences attribute.
setCompositeSequencesCriteria(CompositeSequenceSearchCriteria) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
Constrains the search for CompositeGroup objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeSequencesCriteria(CompositeSequenceSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
Constrains the search for CompositeGroup objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeSequencesCriteria(CompositeSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
 
setCompositeSequencesCriteria(CompositeSequenceSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
 
setCompositeSequencesCriteria(CompositeSequenceSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
Constrains the search for CompositeSequenceDimension objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeSequencesCriteria(CompositeSequenceSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
Constrains the search for CompositeSequenceDimension objects to those associated with CompositeSequence objects by the association and selected by the given CompositeSequenceSearchCriteria.
setCompositeSequencesCriteria(CompositeSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
 
setCompositeSequencesCriteria(CompositeSequenceSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
 
setCompositeSequencesId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeSequencesId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeSequencesId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
 
setCompositeSequencesId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
 
setCompositeSequencesId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeSequencesId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.CompositeSequence.id
setCompositeSequencesId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
 
setCompositeSequencesId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
 
setCompound(Compound) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.CompoundMeasurement
Sets the compound attribute.
setCompound(Compound) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
Sets the compound attribute.
setCompoundCriteria(CompoundSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
Constrains the search for CompoundMeasurement objects to those associated with Compound objects by the association and selected by the given CompoundSearchCriteria.
setCompoundCriteria(CompoundSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
Constrains the search for CompoundMeasurement objects to those associated with Compound objects by the association and selected by the given CompoundSearchCriteria.
setCompoundCriteria(CompoundSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
 
setCompoundCriteria(CompoundSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
 
setCompoundId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
setCompoundId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
setCompoundId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
 
setCompoundId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
 
setCompoundIndices(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Compound
Sets the compoundIndices attribute.
setCompoundIndices(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Sets the compoundIndices attribute.
setCompoundMeasurements(CompoundMeasurement[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Sets the compoundMeasurements attribute.
setCompoundMeasurements(CompoundMeasurement[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Sets the compoundMeasurements attribute.
setConfidenceIndicators(ConfidenceIndicator[]) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Sets the confidenceIndicators attribute.
setConfidenceIndicators(ConfidenceIndicator[]) - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Sets the confidenceIndicators attribute.
setContacts(Contact[]) - Method in interface gov.nih.nci.mageom.domain.Description.Database
Sets the contacts attribute.
setContacts(Contact[]) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Sets the contacts attribute.
setContactsCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Constrains the search for Database objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setContactsCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Constrains the search for Database objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setContactsCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setContactsCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setContactsId(Long) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setContactsId(Long, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setContactsId(Long) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setContactsId(Long, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setContainedFeatures(Feature[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.FeatureDimension
Sets the containedFeatures attribute.
setContainedFeatures(Feature[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
Sets the containedFeatures attribute.
setContainedFeaturesCriteria(FeatureSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
Constrains the search for FeatureDimension objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setContainedFeaturesCriteria(FeatureSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
Constrains the search for FeatureDimension objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setContainedFeaturesCriteria(FeatureSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
 
setContainedFeaturesCriteria(FeatureSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
 
setContainedFeaturesId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setContainedFeaturesId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setContainedFeaturesId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
 
setContainedFeaturesId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
 
setControlFeatures(Feature[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Sets the controlFeatures attribute.
setControlFeatures(Feature[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Sets the controlFeatures attribute.
setControlFeaturesCriteria(FeatureSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Constrains the search for Feature objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setControlFeaturesCriteria(FeatureSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Constrains the search for Feature objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setControlFeaturesCriteria(FeatureSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setControlFeaturesCriteria(FeatureSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setControlFeaturesId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setControlFeaturesId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setControlFeaturesId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setControlFeaturesId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setControlledFeatures(Feature[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Sets the controlledFeatures attribute.
setControlledFeatures(Feature[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Sets the controlledFeatures attribute.
setControlledFeaturesCriteria(FeatureSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Constrains the search for Feature objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setControlledFeaturesCriteria(FeatureSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Constrains the search for Feature objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setControlledFeaturesCriteria(FeatureSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setControlledFeaturesCriteria(FeatureSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setControlledFeaturesId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setControlledFeaturesId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setControlledFeaturesId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setControlledFeaturesId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setControlType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.DesignElement.DesignElement
Sets the controlType attribute.
setControlType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
Sets the controlType attribute.
setCoordinate(SequencePosition) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Sets the coordinate attribute.
setCoordinate(SequencePosition) - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation
Sets the coordinate attribute.
setCriteria(EnhancedSearchCriteria) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterSummaryQuery
 
setCriteria(EnhancedSearchCriteria) - Method in interface gov.nih.nci.common.persistence.enhanced.ESCriteriaQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.AllDerivedBioAssayQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.AllMeasuredBioAssayQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByBioSourceIdentifierQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByBioSourceNameQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByExperimentIdQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.DerivedBioAssayByExperimentNameQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByBioSourceIdentifierQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByBioSourceNameQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByExperimentIdQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.BioAssay.MeasuredBioAssayByExperimentNameQuery
 
setCriterion(EnhancedSearchCriterion) - Method in interface gov.nih.nci.common.persistence.enhanced.ESCriterionQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.AllExperimentQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByChipPlatformTypeQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementIdentiferQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByDesignElementNameQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByExperimentNameQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByInvestigatorNameQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByOrganismNameQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByPubMedIdQuery
 
setCriterion(EnhancedSearchCriterion) - Method in class gov.nih.nci.common.persistence.enhanced.Experiment.ExperimentByTissueTypeQuery
 
setCube(Object[][][]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
Sets the cube attribute.
setDatabase(Database) - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Sets the database attribute.
setDatabase(Database) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Sets the database attribute.
setDatabaseCriteria(DatabaseSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Constrains the search for DatabaseEntry objects to those associated with Database objects by the association and selected by the given DatabaseSearchCriteria.
setDatabaseCriteria(DatabaseSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Constrains the search for DatabaseEntry objects to those associated with Database objects by the association and selected by the given DatabaseSearchCriteria.
setDatabaseCriteria(DatabaseSearchCriteria) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setDatabaseCriteria(DatabaseSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setDatabaseId(Long) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.id
setDatabaseId(Long, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.id
setDatabaseId(Long) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setDatabaseId(Long, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setDatabaseReferences(DatabaseEntry[]) - Method in interface gov.nih.nci.mageom.domain.Description.Description
Sets the databaseReferences attribute.
setDatabaseReferences(DatabaseEntry[]) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Sets the databaseReferences attribute.
setDataType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Sets the dataType attribute.
setDataType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Sets the dataType attribute.
setDataType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
Sets the dataType attribute.
setDataType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Protocol.Parameter
Sets the dataType attribute.
setDataType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Sets the dataType attribute.
setDataType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Sets the dataType attribute.
setDataTypeId(Long) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
setDate(Date) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Audit
Sets the date attribute.
setDate(Date) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Sets the date attribute.
setDate(Date) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.date
setDate(Date, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Audit.date
setDate(Date) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setDate(Date, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setDefaultValue(Measurement) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
Sets the defaultValue attribute.
setDefaultValue(Measurement) - Method in interface gov.nih.nci.mageom.domain.Protocol.Parameter
Sets the defaultValue attribute.
setDefectType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Array.FeatureDefect
Sets the defectType attribute.
setDefectType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
Sets the defectType attribute.
setDefectType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
Sets the defectType attribute.
setDefectType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Array.ZoneDefect
Sets the defectType attribute.
setDeltaX(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Sets the deltaX attribute.
setDeltaX(Float) - Method in interface gov.nih.nci.mageom.domain.Array.PositionDelta
Sets the deltaX attribute.
setDeltaX(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setDeltaX(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setDeltaX(Float) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.deltaX
setDeltaX(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.deltaX
setDeltaY(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Sets the deltaY attribute.
setDeltaY(Float) - Method in interface gov.nih.nci.mageom.domain.Array.PositionDelta
Sets the deltaY attribute.
setDeltaY(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setDeltaY(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setDeltaY(Float) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.deltaY
setDeltaY(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.PositionDelta.deltaY
setDerivedBioAssayData(DerivedBioAssayData[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay
Sets the derivedBioAssayData attribute.
setDerivedBioAssayData(DerivedBioAssayData[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Sets the derivedBioAssayData attribute.
setDerivedBioAssayDataCriteria(DerivedBioAssayDataSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
Constrains the search for DerivedBioAssay objects to those associated with DerivedBioAssayData objects by the association and selected by the given DerivedBioAssayDataSearchCriteria.
setDerivedBioAssayDataCriteria(DerivedBioAssayDataSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
Constrains the search for DerivedBioAssay objects to those associated with DerivedBioAssayData objects by the association and selected by the given DerivedBioAssayDataSearchCriteria.
setDerivedBioAssayDataCriteria(DerivedBioAssayDataSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
 
setDerivedBioAssayDataCriteria(DerivedBioAssayDataSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
 
setDerivedBioAssayDataId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DerivedBioAssayData.id
setDerivedBioAssayDataId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DerivedBioAssayData.id
setDerivedBioAssayDataId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
 
setDerivedBioAssayDataId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
 
setDerivedBioAssayDataTarget(DerivedBioAssayData) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Sets the derivedBioAssayDataTarget attribute.
setDerivedBioAssayDataTarget(DerivedBioAssayData) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Sets the derivedBioAssayDataTarget attribute.
setDerivedBioAssayMap(BioAssayMap[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay
Sets the derivedBioAssayMap attribute.
setDerivedBioAssayMap(BioAssayMap[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Sets the derivedBioAssayMap attribute.
setDescription(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Sets the description attribute.
setDescription(String) - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Sets the description attribute.
setDescription(String) - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
setDescription(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
setDescription(String) - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.description
setDescription(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.description
setDescriptions(Description[]) - Method in interface gov.nih.nci.mageom.domain.Describable
Sets the descriptions attribute.
setDescriptions(Description[]) - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Sets the descriptions attribute.
setDesignElement(DesignElement) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDatum
Sets the designElement attribute.
setDesignElement(DesignElement) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Sets the designElement attribute.
setDesignElementConcreteClass(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setDesignElementConcreteClass(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setDesignElementCriteria(DesignElementSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Constrains the search for BioAssayDatum objects to those associated with DesignElement objects by the association and selected by the given DesignElementSearchCriteria.
setDesignElementCriteria(DesignElementSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Constrains the search for BioAssayDatum objects to those associated with DesignElement objects by the association and selected by the given DesignElementSearchCriteria.
setDesignElementCriteria(DesignElementSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setDesignElementCriteria(DesignElementSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setDesignElementDimension(DesignElementDimension) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Sets the designElementDimension attribute.
setDesignElementDimension(DesignElementDimension) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Sets the designElementDimension attribute.
setDesignElementDimension(DesignElementDimension) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
Sets the designElementDimension attribute.
setDesignElementDimension(DesignElementDimension) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeContents
Sets the designElementDimension attribute.
setDesignElementGroupId(Long) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setDesignElementGroupId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setDesignElementId(Long) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
setDesignElementId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.DesignElement.id
setDesignElementId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.DesignElement.id
setDesignElementId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setDesignElementId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setDesignElementIdentifier(String[]) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Limits results to those Experiments with matching DesignElement.identifier(s)
setDesignElementIdentifier(String[]) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
setDesignElementMapping(DesignElementMapping) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Sets the designElementMapping attribute.
setDesignElementMapping(DesignElementMapping) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Sets the designElementMapping attribute.
setDesignElementMaps(DesignElementMap[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.DesignElementMapping
Sets the designElementMaps attribute.
setDesignElementMaps(DesignElementMap[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
Sets the designElementMaps attribute.
setDesignElementMapsCriteria(DesignElementMapSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
Constrains the search for DesignElementMapping objects to those associated with DesignElementMap objects by the association and selected by the given DesignElementMapSearchCriteria.
setDesignElementMapsCriteria(DesignElementMapSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
Constrains the search for DesignElementMapping objects to those associated with DesignElementMap objects by the association and selected by the given DesignElementMapSearchCriteria.
setDesignElementMapsCriteria(DesignElementMapSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
 
setDesignElementMapsCriteria(DesignElementMapSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
 
setDesignElementMapsId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DesignElementMap.id
setDesignElementMapsId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.DesignElementMap.id
setDesignElementMapsId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
 
setDesignElementMapsId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
 
setDesignElementName(String[]) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Limits results to those Experiments with matching DesignElement.name(s)
setDesignElementName(String[]) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
setDesignProviders(Contact[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Sets the designProviders attribute.
setDesignProviders(Contact[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Sets the designProviders attribute.
setDesignProvidersCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Constrains the search for ArrayDesign objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setDesignProvidersCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Constrains the search for ArrayDesign objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setDesignProvidersCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setDesignProvidersCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setDesignProvidersId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setDesignProvidersId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setDesignProvidersId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setDesignProvidersId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setDistanceUnit(DistanceUnit) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in interface gov.nih.nci.mageom.domain.Array.Fiducial
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in interface gov.nih.nci.mageom.domain.Array.PositionDelta
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
Sets the distanceUnit attribute.
setDistanceUnit(DistanceUnit) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Position
Sets the distanceUnit attribute.
setDistanceUnitCriteria(DistanceUnitSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setDistanceUnitCriteria(DistanceUnitSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setDistanceUnitCriteria(DistanceUnitSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Constrains the search for PositionDelta objects to those associated with DistanceUnit objects by the association and selected by the given DistanceUnitSearchCriteria.
setDistanceUnitCriteria(DistanceUnitSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Constrains the search for PositionDelta objects to those associated with DistanceUnit objects by the association and selected by the given DistanceUnitSearchCriteria.
setDistanceUnitId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setDistanceUnitId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setDistanceUnitId(Long) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.id
setDistanceUnitId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.id
setEditor(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the editor attribute.
setEditor(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the editor attribute.
setEditor(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.editor
setEditor(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.editor
setEditor(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setEditor(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setEmail(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Sets the email attribute.
setEmail(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Sets the email attribute.
setEmail(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.email
setEmail(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.email
setEmail(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setEmail(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setEnd(Integer) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
Sets the end attribute.
setEnd(Integer) - Method in interface gov.nih.nci.mageom.domain.BioSequence.SequencePosition
Sets the end attribute.
setEnd(Integer) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
setEnd(Integer, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
setEnd(Integer) - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.end
setEnd(Integer, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.end
setExperimentalFactor(ExperimentalFactor) - Method in interface gov.nih.nci.mageom.domain.Experiment.FactorValue
Sets the experimentalFactor attribute.
setExperimentalFactor(ExperimentalFactor) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
Sets the experimentalFactor attribute.
setExperimentalFactorCriteria(ExperimentalFactorSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
Constrains the search for FactorValue objects to those associated with ExperimentalFactor objects by the association and selected by the given ExperimentalFactorSearchCriteria.
setExperimentalFactorCriteria(ExperimentalFactorSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
Constrains the search for FactorValue objects to those associated with ExperimentalFactor objects by the association and selected by the given ExperimentalFactorSearchCriteria.
setExperimentalFactorCriteria(ExperimentalFactorSearchCriteria) - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
 
setExperimentalFactorCriteria(ExperimentalFactorSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
 
setExperimentalFactorId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor.id
setExperimentalFactorId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor.id
setExperimentalFactorId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
 
setExperimentalFactorId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
 
setExperimentalFactors(ExperimentalFactor[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Sets the experimentalFactors attribute.
setExperimentalFactors(ExperimentalFactor[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Sets the experimentalFactors attribute.
setExperimentDesigns(ExperimentDesign[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Sets the experimentDesigns attribute.
setExperimentDesigns(ExperimentDesign[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Sets the experimentDesigns attribute.
setExperimentIds(Long[]) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioAssaySearchCriteria
Limits results to those with associated Experiment.id(s) that match.
setExperimentIds(Long[]) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.DerivedBioAssaySearchCriteriaImpl
 
setExperimentIds(Long[]) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.MeasuredBioAssaySearchCriteriaImpl
 
setExperimentIds(Long[]) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioAssaySearchCriteria
Limits results to those with associated Experiment.id(s) that match.
setExperimentIds(Long[]) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSearchCriteria
Limits results to those with associated Experiment.id that match.
setExperimentIds(Long[]) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentFileSearchCriteriaImpl
 
setExperimentName(String) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Limits results to those where Experiment.name matches.
setExperimentName(String) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
setExperimentNames(String[]) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.DerivedBioAssaySearchCriteria
Limits results to those with associated Experiment.name(s) that match.
setExperimentNames(String[]) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.DerivedBioAssaySearchCriteriaImpl
 
setExperimentNames(String[]) - Method in class gov.nih.nci.mageom.search.BioAssay.enhanced.impl.MeasuredBioAssaySearchCriteriaImpl
 
setExperimentNames(String[]) - Method in interface gov.nih.nci.mageom.search.BioAssay.enhanced.MeasuredBioAssaySearchCriteria
Limits results to those with associated Experiment.name(s) that match.
setExperimentNames(String[]) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentFileSearchCriteria
Limits results to those with associated Experiment.name that matches.
setExperimentNames(String[]) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentFileSearchCriteriaImpl
 
setExportedFromDB(String) - Method in interface gov.nih.nci.mageom.domain.Description.ExternalReference
Sets the exportedFromDB attribute.
setExportedFromDB(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Sets the exportedFromDB attribute.
setExportedFromDB(String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportedFromDB
setExportedFromDB(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportedFromDB
setExportedFromDB(String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setExportedFromDB(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setExportedFromServer(String) - Method in interface gov.nih.nci.mageom.domain.Description.ExternalReference
Sets the exportedFromServer attribute.
setExportedFromServer(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Sets the exportedFromServer attribute.
setExportedFromServer(String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportedFromServer
setExportedFromServer(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportedFromServer
setExportedFromServer(String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setExportedFromServer(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setExportID(String) - Method in interface gov.nih.nci.mageom.domain.Description.ExternalReference
Sets the exportID attribute.
setExportID(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Sets the exportID attribute.
setExportID(String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportID
setExportID(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportID
setExportID(String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setExportID(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setExportName(String) - Method in interface gov.nih.nci.mageom.domain.Description.ExternalReference
Sets the exportName attribute.
setExportName(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Sets the exportName attribute.
setExportName(String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportName
setExportName(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.ExternalReference.exportName
setExportName(String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setExportName(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setExternalLIMS(DatabaseEntry) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Compound
Sets the externalLIMS attribute.
setExternalLIMS(DatabaseEntry) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Sets the externalLIMS attribute.
setExternalReference(ExternalReference) - Method in interface gov.nih.nci.mageom.domain.Description.Description
Sets the externalReference attribute.
setExternalReference(ExternalReference) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Sets the externalReference attribute.
setExtraSeed(String) - Method in class gov.nih.nci.common.persistence.RandomGUID
 
setFactorValues(FactorValue[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentalFactor
Sets the factorValues attribute.
setFactorValues(FactorValue[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Sets the factorValues attribute.
setFailTypes(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Sets the failTypes attribute.
setFailTypes(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Reporter
Sets the failTypes attribute.
setFax(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Sets the fax attribute.
setFax(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Sets the fax attribute.
setFax(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.fax
setFax(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.fax
setFax(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setFax(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setFeature(Feature) - Method in interface gov.nih.nci.mageom.domain.Array.FeatureDefect
Sets the feature attribute.
setFeature(Feature) - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
Sets the feature attribute.
setFeature(Feature) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Sets the feature attribute.
setFeature(Feature) - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMS
Sets the feature attribute.
setFeature(Feature) - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureInformation
Sets the feature attribute.
setFeature(Feature) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
Sets the feature attribute.
setFeatureCriteria(FeatureSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
Constrains the search for FeatureDefect objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setFeatureCriteria(FeatureSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
Constrains the search for FeatureDefect objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setFeatureCriteria(FeatureSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
 
setFeatureCriteria(FeatureSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
 
setFeatureCriteria(FeatureSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setFeatureCriteria(FeatureSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setFeatureCriteria(FeatureSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Constrains the search for ManufactureLIMS objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setFeatureCriteria(FeatureSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Constrains the search for ManufactureLIMS objects to those associated with Feature objects by the association and selected by the given FeatureSearchCriteria.
setFeatureDefects(FeatureDefect[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufactureDeviation
Sets the featureDefects attribute.
setFeatureDefects(FeatureDefect[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Sets the featureDefects attribute.
setFeatureExtraction(FeatureExtraction) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
Sets the featureExtraction attribute.
setFeatureExtraction(FeatureExtraction) - Method in interface gov.nih.nci.mageom.domain.BioAssay.MeasuredBioAssay
Sets the featureExtraction attribute.
setFeatureGroup(FeatureGroup) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Sets the featureGroup attribute.
setFeatureGroup(FeatureGroup) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Sets the featureGroup attribute.
setFeatureGroupCriteria(FeatureGroupSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Constrains the search for Feature objects to those associated with FeatureGroup objects by the association and selected by the given FeatureGroupSearchCriteria.
setFeatureGroupCriteria(FeatureGroupSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Constrains the search for Feature objects to those associated with FeatureGroup objects by the association and selected by the given FeatureGroupSearchCriteria.
setFeatureGroupCriteria(FeatureGroupSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setFeatureGroupCriteria(FeatureGroupSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setFeatureGroupId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.id
setFeatureGroupId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.id
setFeatureGroupId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setFeatureGroupId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setFeatureGroups(FeatureGroup[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Sets the featureGroups attribute.
setFeatureGroups(FeatureGroup[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Sets the featureGroups attribute.
setFeatureHeight(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Sets the featureHeight attribute.
setFeatureHeight(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Sets the featureHeight attribute.
setFeatureHeight(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureHeight
setFeatureHeight(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureHeight
setFeatureHeight(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
setFeatureHeight(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
setFeatureId(Long) - Method in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setFeatureId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setFeatureId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
 
setFeatureId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
 
setFeatureId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setFeatureId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setFeatureId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setFeatureId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Feature.id
setFeatureInformationSources(FeatureInformation[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureReporterMap
Sets the featureInformationSources attribute.
setFeatureInformationSources(FeatureInformation[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
Sets the featureInformationSources attribute.
setFeatureLength(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Sets the featureLength attribute.
setFeatureLength(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Sets the featureLength attribute.
setFeatureLength(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureLength
setFeatureLength(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureLength
setFeatureLength(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
setFeatureLength(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
setFeatureLIMSs(ManufactureLIMS[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Sets the featureLIMSs attribute.
setFeatureLIMSs(ManufactureLIMS[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Sets the featureLIMSs attribute.
setFeatureLocation(FeatureLocation) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Sets the featureLocation attribute.
setFeatureLocation(FeatureLocation) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Sets the featureLocation attribute.
setFeatureReporterMaps(FeatureReporterMap[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Sets the featureReporterMaps attribute.
setFeatureReporterMaps(FeatureReporterMap[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Reporter
Sets the featureReporterMaps attribute.
setFeatures(Feature[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Sets the features attribute.
setFeatures(Feature[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Sets the features attribute.
setFeatureShape(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Sets the featureShape attribute.
setFeatureShape(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Sets the featureShape attribute.
setFeatureWidth(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Sets the featureWidth attribute.
setFeatureWidth(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Sets the featureWidth attribute.
setFeatureWidth(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureWidth
setFeatureWidth(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup.featureWidth
setFeatureWidth(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
setFeatureWidth(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
setFiducials(Fiducial[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the fiducials attribute.
setFiducials(Fiducial[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the fiducials attribute.
setFiducialType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Array.Fiducial
Sets the fiducialType attribute.
setFiducialType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
Sets the fiducialType attribute.
setFirstName(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Sets the firstName attribute.
setFirstName(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Person
Sets the firstName attribute.
setFirstName(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setFirstName(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setFirstName(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.firstName
setFirstName(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.firstName
setFirstName(String) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion
 
setFormat(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.BioAssay.Image
Sets the format attribute.
setFormat(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Sets the format attribute.
setGb4Name(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setGb4Name(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setGb4Value(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setGb4Value(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setGb4Values(String[]) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummarySearchCriteria
Limits results to those with associated GB4 value(s) that match.
setGb4Values(String[]) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl
 
setHandler(SearchCriteriaHandler) - Method in class gov.nih.nci.mageom.search.impl.MAGEOMSearchCriteria
 
setHardware(Hardware) - Method in interface gov.nih.nci.mageom.domain.Protocol.HardwareApplication
Sets the hardware attribute.
setHardware(Hardware) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
Sets the hardware attribute.
setHardware(Hardware) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Sets the hardware attribute.
setHardware(Hardware) - Method in interface gov.nih.nci.mageom.domain.Protocol.Software
Sets the hardware attribute.
setHardwareApplications(HardwareApplication[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Sets the hardwareApplications attribute.
setHardwareApplications(HardwareApplication[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Sets the hardwareApplications attribute.
setHardwareCriteria(HardwareSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Constrains the search for HardwareApplication objects to those associated with Hardware objects by the association and selected by the given HardwareSearchCriteria.
setHardwareCriteria(HardwareSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Constrains the search for HardwareApplication objects to those associated with Hardware objects by the association and selected by the given HardwareSearchCriteria.
setHardwareCriteria(HardwareSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
setHardwareCriteria(HardwareSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
setHardwareCriteria(HardwareSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setHardwareCriteria(HardwareSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setHardwareCriteria(HardwareSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Constrains the search for Software objects to those associated with Hardware objects by the association and selected by the given HardwareSearchCriteria.
setHardwareCriteria(HardwareSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Constrains the search for Software objects to those associated with Hardware objects by the association and selected by the given HardwareSearchCriteria.
setHardwareId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
setHardwareId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
setHardwareId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
setHardwareId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
setHardwareId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setHardwareId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setHardwareId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
setHardwareId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
setHardwareManufacturers(Contact[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Sets the hardwareManufacturers attribute.
setHardwareManufacturers(Contact[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Sets the hardwareManufacturers attribute.
setHardwareManufacturersCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Constrains the search for Hardware objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setHardwareManufacturersCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Constrains the search for Hardware objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setHardwareManufacturersCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setHardwareManufacturersCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setHardwareManufacturersId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setHardwareManufacturersId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setHardwareManufacturersId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setHardwareManufacturersId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setHardwares(Hardware[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Sets the hardwares attribute.
setHardwares(Hardware[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Sets the hardwares attribute.
setHardwaresCriteria(HardwareSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setHardwaresCriteria(HardwareSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setHardwaresCriteria(HardwareSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Constrains the search for Protocol objects to those associated with Hardware objects by the association and selected by the given HardwareSearchCriteria.
setHardwaresCriteria(HardwareSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Constrains the search for Protocol objects to those associated with Hardware objects by the association and selected by the given HardwareSearchCriteria.
setHardwaresId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setHardwaresId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setHardwaresId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
setHardwaresId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.id
setId(Long) - Method in class gov.nih.nci.mageom.domain.impl.MAGEOMObject
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureDeviationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureDeviationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.FeatureDefectSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.FiducialSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.FiducialSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureDeviationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureDeviationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.FiducialSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.FiducialSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSBiomaterialSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.PositionDeltaSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.CompositeGroupSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.DesignElementGroupSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.DesignElementGroupSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.FeatureGroupSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.DesignElementGroupSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.DesignElementGroupSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayCreationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayCreationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssaySearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.DerivedBioAssaySearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.HybridizationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.HybridizationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageAcquisitionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageAcquisitionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayCreationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayCreationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.HybridizationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.HybridizationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageAcquisitionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageAcquisitionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.PhysicalBioAssaySearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.PhysicalBioAssaySearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.PhysicalBioAssaySearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.PhysicalBioAssaySearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDataSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDataSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDimensionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMappingSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataCubeSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataCubeSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataTuplesSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataTuplesSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataValuesSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioDataValuesSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.CompositeSequenceDimensionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DerivedBioAssayDataSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DerivedBioAssayDataSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementDimensionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementDimensionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMappingSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMapSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementMapSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.FeatureDimensionSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDataSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDataSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataCubeSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataCubeSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataTuplesSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataTuplesSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataValuesSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataValuesSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DerivedBioAssayDataSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DerivedBioAssayDataSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMapSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMapSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.MeasuredBioAssayDataSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.MeasuredBioAssayDataSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.MeasuredBioAssayDataSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.MeasuredBioAssayDataSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.TransformationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioEvent.BioEventSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioEvent.BioEventSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioEvent.impl.BioEventSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioEvent.impl.BioEventSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioEvent.impl.MapSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioEvent.impl.MapSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioEvent.MapSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioEvent.MapSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialMeasurementSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioMaterialSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSampleSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSampleSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundMeasurementSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSampleSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSampleSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.TreatmentSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.TreatmentSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureLocationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureLocationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Description.ExternalReferenceSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeCompositeMapSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositePositionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.CompositeSequenceSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.DesignElementSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.DesignElementSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureInformationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureInformationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.DesignElementSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.DesignElementSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureInformationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureInformationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterCompositeMapSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentalFactorSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentalFactorSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.FactorValueSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentalFactorSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentalFactorSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.ExtendableSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.ExtendableSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.BioAssayDataClusterSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeContentsSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeContentsSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeContentsSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeContentsSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeValueSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeValueSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.impl.ExtendableSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.impl.ExtendableSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.ConcentrationUnitSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.ConcentrationUnitSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.DistanceUnitSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.DistanceUnitSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.MassUnitSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.MassUnitSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.QuantityUnitSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.QuantityUnitSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.TemperatureUnitSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.TemperatureUnitSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.TimeUnitSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.TimeUnitSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.UnitSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.UnitSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Measurement.VolumeUnitSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Measurement.VolumeUnitSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableApplicationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableApplicationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableApplicationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableApplicationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.DerivedSignalSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.DerivedSignalSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ErrorSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ErrorSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ExpectedValueSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ExpectedValueSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.FailedSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.FailedSearchCriteria
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.DerivedSignalSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.DerivedSignalSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ErrorSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ErrorSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ExpectedValueSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ExpectedValueSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.FailedSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.FailedSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.MeasuredSignalSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.MeasuredSignalSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.PresentAbsentSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.PresentAbsentSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.PValueSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.PValueSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.RatioSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.RatioSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.SpecializedQuantitationTypeSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.SpecializedQuantitationTypeSearchCriteriaImpl
 
setId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.StandardQuantitationTypeSearchCriteriaImpl
Sets the value of the id criterion.
setId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.StandardQuantitationTypeSearchCriteriaImpl
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.MeasuredSignalSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.MeasuredSignalSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.PresentAbsentSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.PresentAbsentSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.PValueSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.PValueSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.RatioSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.RatioSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.SpecializedQuantitationTypeSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.SpecializedQuantitationTypeSearchCriteria
 
setId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.StandardQuantitationTypeSearchCriteria
Sets the value of the id criterion.
setId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.StandardQuantitationTypeSearchCriteria
 
setIdentifier(String) - Method in interface gov.nih.nci.mageom.domain.Identifiable
Sets the identifier attribute.
setIdentifier(String) - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
Sets the identifier attribute.
setIdentifier(String) - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.identifier
setIdentifier(String, String, String) - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.identifier
setIdentifier(String) - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
setIdentifier(String, String, String) - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
setIdentifierLIMS(DatabaseEntry) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Sets the identifierLIMS attribute.
setIdentifierLIMS(DatabaseEntry) - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMS
Sets the identifierLIMS attribute.
setImages(Image[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.ImageAcquisition
Sets the images attribute.
setImages(Image[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
Sets the images attribute.
setImmobilizedCharacteristics(BioSequence[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Sets the immobilizedCharacteristics attribute.
setImmobilizedCharacteristics(BioSequence[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Reporter
Sets the immobilizedCharacteristics attribute.
setImmobilizedCharacteristicsCriteria(BioSequenceSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
 
setImmobilizedCharacteristicsCriteria(BioSequenceSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
 
setImmobilizedCharacteristicsCriteria(BioSequenceSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
Constrains the search for Reporter objects to those associated with BioSequence objects by the association and selected by the given BioSequenceSearchCriteria.
setImmobilizedCharacteristicsCriteria(BioSequenceSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
Constrains the search for Reporter objects to those associated with BioSequence objects by the association and selected by the given BioSequenceSearchCriteria.
setImmobilizedCharacteristicsId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
 
setImmobilizedCharacteristicsId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
 
setImmobilizedCharacteristicsId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id
setImmobilizedCharacteristicsId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.id
setInformation(ArrayManufacture) - Method in interface gov.nih.nci.mageom.domain.Array.Array
Sets the information attribute.
setInformation(ArrayManufacture) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Sets the information attribute.
setInformationCriteria(ArrayManufactureSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Constrains the search for Array objects to those associated with ArrayManufacture objects by the association and selected by the given ArrayManufactureSearchCriteria.
setInformationCriteria(ArrayManufactureSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Constrains the search for Array objects to those associated with ArrayManufacture objects by the association and selected by the given ArrayManufactureSearchCriteria.
setInformationCriteria(ArrayManufactureSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setInformationCriteria(ArrayManufactureSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setInformationId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.id
setInformationId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.id
setInformationId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setInformationId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setInvestigatorName(NameCriterion) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Limit results to those Experiment with providers, Person(s), matching name criterion
setInvestigatorName(NameCriterion) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
setIsApproximateLength(Boolean) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the isApproximateLength attribute.
setIsApproximateLength(Boolean) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the isApproximateLength attribute.
setIsApproximateLength() - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isApproximateLength to a Boolean value of true.
setIsApproximateLength(Boolean) - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isApproximateLength
setIsApproximateLength(Boolean, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isApproximateLength
setIsApproximateLength() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setIsApproximateLength(Boolean) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setIsApproximateLength(Boolean, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setIsBackground(Boolean) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Sets the isBackground attribute.
setIsBackground(Boolean) - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Sets the isBackground attribute.
setIsBackground() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
setIsBackground(Boolean) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
setIsBackground(Boolean, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
setIsBackground() - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.isBackground to a Boolean value of true.
setIsBackground(Boolean) - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.isBackground
setIsBackground(Boolean, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.QuantitationTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.isBackground
setIsCircular(Boolean) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the isCircular attribute.
setIsCircular(Boolean) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the isCircular attribute.
setIsCircular() - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isCircular to a Boolean value of true.
setIsCircular(Boolean) - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isCircular
setIsCircular(Boolean, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.isCircular
setIsCircular() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setIsCircular(Boolean) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setIsCircular(Boolean, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setIsEditable(boolean) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setIsEditable(boolean) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.SecurityBean
 
setIsSolvent(Boolean) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Compound
Sets the isSolvent attribute.
setIsSolvent(Boolean) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Sets the isSolvent attribute.
setIsSolvent() - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.isSolvent to a Boolean value of true.
setIsSolvent(Boolean) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.isSolvent
setIsSolvent(Boolean, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.CompoundSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.isSolvent
setIsSolvent() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
 
setIsSolvent(Boolean) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
 
setIsSolvent(Boolean, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
 
setIssue(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the issue attribute.
setIssue(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the issue attribute.
setIssue(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.issue
setIssue(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.issue
setIssue(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setIssue(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setKbPositionName(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setKbPositionName(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setKbPositionValue(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setKbPositionValue(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setKbPositionValues(String[]) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummarySearchCriteria
Limits results to those with associated position value(s) that match.
setKbPositionValues(String[]) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl
 
setKindCV(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Sets the kindCV attribute.
setKindCV(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Sets the kindCV attribute.
setKindCV(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setKindCV(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setKindCV(String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.kindCV
setKindCV(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.kindCV
setLabels(Compound[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.Channel
Sets the labels attribute.
setLabels(Compound[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
Sets the labels attribute.
setLabels(Compound[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
Sets the labels attribute.
setLabels(Compound[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.LabeledExtract
Sets the labels attribute.
setLabelsCriteria(CompoundSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
Constrains the search for Channel objects to those associated with Compound objects by the association and selected by the given CompoundSearchCriteria.
setLabelsCriteria(CompoundSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
Constrains the search for Channel objects to those associated with Compound objects by the association and selected by the given CompoundSearchCriteria.
setLabelsCriteria(CompoundSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
 
setLabelsCriteria(CompoundSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
 
setLabelsCriteria(CompoundSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
 
setLabelsCriteria(CompoundSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
 
setLabelsCriteria(CompoundSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
Constrains the search for LabeledExtract objects to those associated with Compound objects by the association and selected by the given CompoundSearchCriteria.
setLabelsCriteria(CompoundSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
Constrains the search for LabeledExtract objects to those associated with Compound objects by the association and selected by the given CompoundSearchCriteria.
setLabelsId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
setLabelsId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.ChannelSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
setLabelsId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
 
setLabelsId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
 
setLabelsId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
 
setLabelsId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
 
setLabelsId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
setLabelsId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.LabeledExtractSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Compound.id
setLastName(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Sets the lastName attribute.
setLastName(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Person
Sets the lastName attribute.
setLastName(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setLastName(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setLastName(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.lastName
setLastName(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.lastName
setLastName(String) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion
 
setLength(Float) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the length attribute.
setLength(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the length attribute.
setLength(Integer) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the length attribute.
setLength(Integer) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the length attribute.
setLength(Float) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.length
setLength(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.length
setLength(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setLength(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setLength(Integer) - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.length
setLength(Integer, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.BioSequenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.BioSequence.length
setLength(Integer) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setLength(Integer, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
setLowerRightX(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Sets the lowerRightX attribute.
setLowerRightX(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Sets the lowerRightX attribute.
setLowerRightX(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setLowerRightX(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setLowerRightX(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.lowerRightX
setLowerRightX(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.lowerRightX
setLowerRightY(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Sets the lowerRightY attribute.
setLowerRightY(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Sets the lowerRightY attribute.
setLowerRightY(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setLowerRightY(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setLowerRightY(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.lowerRightY
setLowerRightY(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.lowerRightY
setMake(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Sets the make attribute.
setMake(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Sets the make attribute.
setMake(String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.make
setMake(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.make
setMake(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setMake(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setManufacturingDate(String) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Sets the manufacturingDate attribute.
setManufacturingDate(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Sets the manufacturingDate attribute.
setManufacturingDate(String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.manufacturingDate
setManufacturingDate(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.manufacturingDate
setManufacturingDate(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setManufacturingDate(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setMaterialType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterial
Sets the materialType attribute.
setMaterialType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Sets the materialType attribute.
setMaxRecordset(Integer) - Method in interface gov.nih.nci.common.search.Searchable
 
setMaxRecordset(Integer) - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
Not supported.
setMaxResultSize(int) - Method in class gov.nih.nci.common.query.impl.QueryImpl
 
setMaxResultSize(int) - Method in interface gov.nih.nci.common.query.Query
 
setMeasuredBioAssayData(MeasuredBioAssayData[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
Sets the measuredBioAssayData attribute.
setMeasuredBioAssayData(MeasuredBioAssayData[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.MeasuredBioAssay
Sets the measuredBioAssayData attribute.
setMeasuredBioAssayDataCriteria(MeasuredBioAssayDataSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
 
setMeasuredBioAssayDataCriteria(MeasuredBioAssayDataSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
 
setMeasuredBioAssayDataCriteria(MeasuredBioAssayDataSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
Constrains the search for MeasuredBioAssay objects to those associated with MeasuredBioAssayData objects by the association and selected by the given MeasuredBioAssayDataSearchCriteria.
setMeasuredBioAssayDataCriteria(MeasuredBioAssayDataSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
Constrains the search for MeasuredBioAssay objects to those associated with MeasuredBioAssayData objects by the association and selected by the given MeasuredBioAssayDataSearchCriteria.
setMeasuredBioAssayDataId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
 
setMeasuredBioAssayDataId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
 
setMeasuredBioAssayDataId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.MeasuredBioAssayData.id
setMeasuredBioAssayDataId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.MeasuredBioAssaySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.MeasuredBioAssayData.id
setMeasuredBioAssayTarget(MeasuredBioAssay) - Method in interface gov.nih.nci.mageom.domain.BioAssay.FeatureExtraction
Sets the measuredBioAssayTarget attribute.
setMeasuredBioAssayTarget(MeasuredBioAssay) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
Sets the measuredBioAssayTarget attribute.
setMeasurement(Measurement) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterialMeasurement
Sets the measurement attribute.
setMeasurement(Measurement) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.CompoundMeasurement
Sets the measurement attribute.
setMeasurement(Measurement) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
Sets the measurement attribute.
setMeasurement(Measurement) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
Sets the measurement attribute.
setMeasurement(Measurement) - Method in interface gov.nih.nci.mageom.domain.Experiment.FactorValue
Sets the measurement attribute.
setMeasurement(Measurement) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
Sets the measurement attribute.
setMembers(Contact[]) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
Sets the members attribute.
setMembers(Contact[]) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.SecurityGroup
Sets the members attribute.
setMembersCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
 
setMembersCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
 
setMembersCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
Constrains the search for SecurityGroup objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setMembersCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
Constrains the search for SecurityGroup objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setMembersId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
 
setMembersId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
 
setMembersId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setMembersId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecurityGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setMidInitials(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Sets the midInitials attribute.
setMidInitials(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Person
Sets the midInitials attribute.
setMidInitials(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setMidInitials(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
setMidInitials(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.midInitials
setMidInitials(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.PersonSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.midInitials
setMidInitials(String) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.NameCriterion
 
setMismatchInformation(MismatchInformation[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositePosition
Sets the mismatchInformation attribute.
setMismatchInformation(MismatchInformation[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureInformation
Sets the mismatchInformation attribute.
setMismatchInformation(MismatchInformation[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
Sets the mismatchInformation attribute.
setMismatchInformation(MismatchInformation[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
Sets the mismatchInformation attribute.
setMismatchInformation(MismatchInformation[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
Sets the mismatchInformation attribute.
setMismatchInformation(MismatchInformation[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.ReporterPosition
Sets the mismatchInformation attribute.
setModel(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Sets the model attribute.
setModel(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Sets the model attribute.
setModel(String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.model
setModel(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Hardware.model
setModel(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setModel(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
setName(String) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Sets the name attribute.
setName(String) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Sets the name attribute.
setName(String) - Method in interface gov.nih.nci.mageom.domain.Identifiable
Sets the name attribute.
setName(String) - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
Sets the name attribute.
setName(String) - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Sets the name attribute.
setName(String) - Method in interface gov.nih.nci.mageom.domain.NameValueType
Sets the name attribute.
setName(String) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
 
setName(String, String, String) - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
 
setName(String) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeValueSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue.name
setName(String, String, String) - Method in interface gov.nih.nci.mageom.search.HigherLevelAnalysis.NodeValueSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue.name
setName(String) - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.name
setName(String, String, String) - Method in interface gov.nih.nci.mageom.search.IdentifiableSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Identifiable.name
setName(String) - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
setName(String, String, String) - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
setName(String) - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
setName(String, String, String) - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
setName(String) - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.name
setName(String, String, String) - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.name
setNegative(boolean) - Method in interface gov.nih.nci.common.query.Criterion
 
setNegative(boolean) - Method in class gov.nih.nci.common.query.impl.CriterionImpl
 
setNewSequence(String) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Sets the newSequence attribute.
setNewSequence(String) - Method in interface gov.nih.nci.mageom.domain.DesignElement.MismatchInformation
Sets the newSequence attribute.
setNewSequence(String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
setNewSequence(String, String, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
setNewSequence(String) - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.newSequence
setNewSequence(String, String, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.newSequence
setNodeContents(NodeContents[]) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Sets the nodeContents attribute.
setNodeContents(NodeContents[]) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.Node
Sets the nodeContents attribute.
setNodes(Node[]) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.BioAssayDataCluster
Sets the nodes attribute.
setNodes(Node[]) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
Sets the nodes attribute.
setNodes(Node[]) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Sets the nodes attribute.
setNodes(Node[]) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.Node
Sets the nodes attribute.
setNodeValue(NodeValue[]) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Sets the nodeValue attribute.
setNodeValue(NodeValue[]) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.Node
Sets the nodeValue attribute.
setNormalizationDescription(Description) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Sets the normalizationDescription attribute.
setNormalizationDescription(Description) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Sets the normalizationDescription attribute.
setNumArrays(Integer) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the numArrays attribute.
setNumArrays(Integer) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the numArrays attribute.
setNumArrays(Integer) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.numArrays
setNumArrays(Integer, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.numArrays
setNumArrays(Integer) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setNumArrays(Integer, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setNumberOfFeatures(Integer) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Sets the numberOfFeatures attribute.
setNumberOfFeatures(Integer) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Sets the numberOfFeatures attribute.
setNumberOfFeatures(Integer) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.numberOfFeatures
setNumberOfFeatures(Integer, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.numberOfFeatures
setNumberOfFeatures(Integer) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setNumberOfFeatures(Integer, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setNumFeaturesPerCol(Integer) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Sets the numFeaturesPerCol attribute.
setNumFeaturesPerCol(Integer) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Sets the numFeaturesPerCol attribute.
setNumFeaturesPerCol(Integer) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setNumFeaturesPerCol(Integer, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setNumFeaturesPerCol(Integer) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.numFeaturesPerCol
setNumFeaturesPerCol(Integer, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.numFeaturesPerCol
setNumFeaturesPerRow(Integer) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Sets the numFeaturesPerRow attribute.
setNumFeaturesPerRow(Integer) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Sets the numFeaturesPerRow attribute.
setNumFeaturesPerRow(Integer) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setNumFeaturesPerRow(Integer, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setNumFeaturesPerRow(Integer) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.numFeaturesPerRow
setNumFeaturesPerRow(Integer, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.numFeaturesPerRow
setOntologyEntries(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the ontologyEntries attribute.
setOntologyEntries(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the ontologyEntries attribute.
setOntologyReference(DatabaseEntry) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Sets the ontologyReference attribute.
setOntologyReference(DatabaseEntry) - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Sets the ontologyReference attribute.
setOrder(String) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
Sets the order attribute.
setOrder(Integer) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Sets the order attribute.
setOrder(Integer) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Sets the order attribute.
setOrder(Integer) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
 
setOrder(Integer, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
 
setOrder(Integer) - Method in interface gov.nih.nci.mageom.search.BioMaterial.TreatmentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Treatment.order
setOrder(Integer, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.TreatmentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioMaterial.Treatment.order
setOrderBy(String) - Method in interface gov.nih.nci.common.search.Searchable
 
setOrderBy(String) - Method in class gov.nih.nci.mageom.search.enhanced.impl.EnhancedMAGEOMSearchCriteria
Not supported.
setOrganism(String) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Limits results to those Experiments with BioMaterial having characteristics, OntologyEntry(s), with a category of 'Organism' OR having descriptions.annotations, OntologyEntry(s), with a category of 'species'
setOrganism(String) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
setOrientationMark(String) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the orientationMark attribute.
setOrientationMark(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the orientationMark attribute.
setOrientationMark(String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.orientationMark
setOrientationMark(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.orientationMark
setOrientationMark(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setOrientationMark(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setOrientationMarkPosition(String) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the orientationMarkPosition attribute.
setOrientationMarkPosition(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the orientationMarkPosition attribute.
setOrientationMarkPosition(String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.orientationMarkPosition
setOrientationMarkPosition(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.orientationMarkPosition
setOrientationMarkPosition(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setOrientationMarkPosition(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setOriginRelativeTo(String) - Method in interface gov.nih.nci.mageom.domain.Array.Array
Sets the originRelativeTo attribute.
setOriginRelativeTo(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Sets the originRelativeTo attribute.
setOriginRelativeTo(String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.originRelativeTo
setOriginRelativeTo(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ArraySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.Array.originRelativeTo
setOriginRelativeTo(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setOriginRelativeTo(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
setOtherKind(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Sets the otherKind attribute.
setOtherKind(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Sets the otherKind attribute.
setOtherKind(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setOtherKind(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setOtherKind(String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.otherKind
setOtherKind(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.otherKind
setOwner(Contact[]) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Sets the owner attribute.
setOwner(Contact[]) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Security
Sets the owner attribute.
setOwnerCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setOwnerCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setOwnerCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Constrains the search for Security objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setOwnerCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Constrains the search for Security objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setOwnerId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setOwnerId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setOwnerId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setOwnerId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setPages(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the pages attribute.
setPages(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the pages attribute.
setPages(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.pages
setPages(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.pages
setPages(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setPages(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setParameters(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the parameters attribute.
setParameters(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the parameters attribute.
setParameterType(Parameter) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
Sets the parameterType attribute.
setParameterType(Parameter) - Method in interface gov.nih.nci.mageom.domain.Protocol.ParameterValue
Sets the parameterType attribute.
setParameterTypeCriteria(ParameterSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
setParameterTypeCriteria(ParameterSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
setParameterTypeCriteria(ParameterSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Constrains the search for ParameterValue objects to those associated with Parameter objects by the association and selected by the given ParameterSearchCriteria.
setParameterTypeCriteria(ParameterSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Constrains the search for ParameterValue objects to those associated with Parameter objects by the association and selected by the given ParameterSearchCriteria.
setParameterTypeId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
setParameterTypeId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
setParameterTypeId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameter.id
setParameterTypeId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameter.id
setParameterTypes(Parameter[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Sets the parameterTypes attribute.
setParameterTypes(Parameter[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.Parameterizable
Sets the parameterTypes attribute.
setParameterValues(ParameterValue[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
Sets the parameterValues attribute.
setParameterValues(ParameterValue[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.ParameterizableApplication
Sets the parameterValues attribute.
setParent(Organization) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
Sets the parent attribute.
setParent(Organization) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Organization
Sets the parent attribute.
setParentCriteria(OrganizationSearchCriteria) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
 
setParentCriteria(OrganizationSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
 
setParentCriteria(OrganizationSearchCriteria) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
Constrains the search for Organization objects to those associated with Organization objects by the association and selected by the given OrganizationSearchCriteria.
setParentCriteria(OrganizationSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
Constrains the search for Organization objects to those associated with Organization objects by the association and selected by the given OrganizationSearchCriteria.
setParentId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
 
setParentId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
 
setParentId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id
setParentId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.OrganizationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Organization.id
setPerformer(Contact) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Audit
Sets the performer attribute.
setPerformer(Contact) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Sets the performer attribute.
setPerformerCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Constrains the search for Audit objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setPerformerCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Constrains the search for Audit objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setPerformerCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setPerformerCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setPerformerId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setPerformerId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.AuditSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setPerformerId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setPerformerId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
setPerformers(Person[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Sets the performers attribute.
setPerformers(Person[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Sets the performers attribute.
setPerformersCriteria(PersonSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setPerformersCriteria(PersonSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setPerformersCriteria(PersonSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Constrains the search for ProtocolApplication objects to those associated with Person objects by the association and selected by the given PersonSearchCriteria.
setPerformersCriteria(PersonSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Constrains the search for ProtocolApplication objects to those associated with Person objects by the association and selected by the given PersonSearchCriteria.
setPerformersId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setPerformersId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setPerformersId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.id
setPerformersId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Person.id
setPhone(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Sets the phone attribute.
setPhone(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Sets the phone attribute.
setPhone(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.phone
setPhone(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.phone
setPhone(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setPhone(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setPhysicalBioAssay(PhysicalBioAssay) - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayTreatment
Sets the physicalBioAssay attribute.
setPhysicalBioAssay(PhysicalBioAssay) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
Sets the physicalBioAssay attribute.
setPhysicalBioAssayCriteria(PhysicalBioAssaySearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
Constrains the search for BioAssayTreatment objects to those associated with PhysicalBioAssay objects by the association and selected by the given PhysicalBioAssaySearchCriteria.
setPhysicalBioAssayCriteria(PhysicalBioAssaySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
Constrains the search for BioAssayTreatment objects to those associated with PhysicalBioAssay objects by the association and selected by the given PhysicalBioAssaySearchCriteria.
setPhysicalBioAssayCriteria(PhysicalBioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
 
setPhysicalBioAssayCriteria(PhysicalBioAssaySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
 
setPhysicalBioAssayData(Image[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Sets the physicalBioAssayData attribute.
setPhysicalBioAssayData(Image[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay
Sets the physicalBioAssayData attribute.
setPhysicalBioAssayId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id
setPhysicalBioAssayId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.BioAssayTreatmentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id
setPhysicalBioAssayId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
 
setPhysicalBioAssayId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
 
setPhysicalBioAssaySource(PhysicalBioAssay) - Method in interface gov.nih.nci.mageom.domain.BioAssay.FeatureExtraction
Sets the physicalBioAssaySource attribute.
setPhysicalBioAssaySource(PhysicalBioAssay) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
Sets the physicalBioAssaySource attribute.
setPhysicalBioAssaySourceCriteria(PhysicalBioAssaySearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
Constrains the search for FeatureExtraction objects to those associated with PhysicalBioAssay objects by the association and selected by the given PhysicalBioAssaySearchCriteria.
setPhysicalBioAssaySourceCriteria(PhysicalBioAssaySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
Constrains the search for FeatureExtraction objects to those associated with PhysicalBioAssay objects by the association and selected by the given PhysicalBioAssaySearchCriteria.
setPhysicalBioAssaySourceCriteria(PhysicalBioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
 
setPhysicalBioAssaySourceCriteria(PhysicalBioAssaySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
 
setPhysicalBioAssaySourceId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id
setPhysicalBioAssaySourceId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.FeatureExtractionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.PhysicalBioAssay.id
setPhysicalBioAssaySourceId(Long) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
 
setPhysicalBioAssaySourceId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
 
setPhysicalBioAssayTarget(PhysicalBioAssay) - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayCreation
Sets the physicalBioAssayTarget attribute.
setPhysicalBioAssayTarget(PhysicalBioAssay) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Sets the physicalBioAssayTarget attribute.
setPolymerType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the polymerType attribute.
setPolymerType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the polymerType attribute.
setPosition(Position) - Method in interface gov.nih.nci.mageom.domain.Array.Fiducial
Sets the position attribute.
setPosition(Position) - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
Sets the position attribute.
setPosition(Position) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Sets the position attribute.
setPosition(Position) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Sets the position attribute.
setPositionDelta(PositionDelta) - Method in interface gov.nih.nci.mageom.domain.Array.FeatureDefect
Sets the positionDelta attribute.
setPositionDelta(PositionDelta) - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
Sets the positionDelta attribute.
setPositionDelta(PositionDelta) - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
Sets the positionDelta attribute.
setPositionDelta(PositionDelta) - Method in interface gov.nih.nci.mageom.domain.Array.ZoneDefect
Sets the positionDelta attribute.
setPrefetchDesignElements(boolean) - Method in interface gov.nih.nci.mageom.search.BioAssayData.DesignElementDimensionSearchCriteria
 
setPrefetchDesignElements(boolean) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl
 
setPrefetchQuantitationTypes(boolean) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
setPrefetchQuantitationTypes(boolean) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
 
setProducerTransformation(Transformation) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.DerivedBioAssayData
Sets the producerTransformation attribute.
setProducerTransformation(Transformation) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
Sets the producerTransformation attribute.
setPropertySets(NameValueType[]) - Method in interface gov.nih.nci.mageom.domain.Extendable
Sets the propertySets attribute.
setPropertySets(NameValueType[]) - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
Sets the propertySets attribute.
setPropertySets(NameValueType[]) - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Sets the propertySets attribute.
setPropertySets(NameValueType[]) - Method in interface gov.nih.nci.mageom.domain.NameValueType
Sets the propertySets attribute.
setProtocol(Protocol) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Sets the protocol attribute.
setProtocol(Protocol) - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Sets the protocol attribute.
setProtocolApplications(ProtocolApplication[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Sets the protocolApplications attribute.
setProtocolApplications(ProtocolApplication[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Sets the protocolApplications attribute.
setProtocolApplications(ProtocolApplication[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Sets the protocolApplications attribute.
setProtocolApplications(ProtocolApplication[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Sets the protocolApplications attribute.
setProtocolApplications(ProtocolApplication[]) - Method in interface gov.nih.nci.mageom.domain.BioEvent.BioEvent
Sets the protocolApplications attribute.
setProtocolApplications(ProtocolApplication[]) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
Sets the protocolApplications attribute.
setProtocolCriteria(ProtocolSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setProtocolCriteria(ProtocolSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setProtocolCriteria(ProtocolSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Constrains the search for ProtocolApplication objects to those associated with Protocol objects by the association and selected by the given ProtocolSearchCriteria.
setProtocolCriteria(ProtocolSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Constrains the search for ProtocolApplication objects to those associated with Protocol objects by the association and selected by the given ProtocolSearchCriteria.
setProtocolId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setProtocolId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
setProtocolId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.id
setProtocolId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.id
setProviders(Contact[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.Experiment
Sets the providers attribute.
setProviders(Contact[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Sets the providers attribute.
setProvidersCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Constrains the search for Experiment objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setProvidersCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Constrains the search for Experiment objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setProvidersCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setProvidersCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setProvidersId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setProvidersId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setProvidersId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setProvidersId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
setPublication(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the publication attribute.
setPublication(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the publication attribute.
setPublication(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.publication
setPublication(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.publication
setPublication(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setPublication(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setPublisher(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the publisher attribute.
setPublisher(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the publisher attribute.
setPublisher(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.publisher
setPublisher(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.publisher
setPublisher(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setPublisher(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setPubMedId(String) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Limits results to those Experiments with BibliographicReference(s) accessions, DatabaseEntry(s), with a matching accession value.
setPubMedId(String) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
setQuality(String) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Sets the quality attribute.
setQuality(String) - Method in interface gov.nih.nci.mageom.domain.Array.ManufactureLIMS
Sets the quality attribute.
setQuality(String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setQuality(String, String, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
setQuality(String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMS.quality
setQuality(String, String, String) - Method in interface gov.nih.nci.mageom.search.Array.ManufactureLIMSSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ManufactureLIMS.quality
setQualityControlDescription(Description) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Sets the qualityControlDescription attribute.
setQualityControlDescription(Description) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Sets the qualityControlDescription attribute.
setQualityControlStatistics(NameValueType[]) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Sets the qualityControlStatistics attribute.
setQualityControlStatistics(NameValueType[]) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Sets the qualityControlStatistics attribute.
setQualityControlStatistics(NameValueType[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterial
Sets the qualityControlStatistics attribute.
setQualityControlStatistics(NameValueType[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Sets the qualityControlStatistics attribute.
setQuantitationDimension(QuantitationTypeDimension) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
Sets the quantitationDimension attribute.
setQuantitationDimension(QuantitationTypeDimension) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeContents
Sets the quantitationDimension attribute.
setQuantitationType(QuantitationType) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDatum
Sets the quantitationType attribute.
setQuantitationType(QuantitationType) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Sets the quantitationType attribute.
setQuantitationTypeCriteria(QuantitationTypeSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Constrains the search for BioAssayDatum objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setQuantitationTypeCriteria(QuantitationTypeSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Constrains the search for BioAssayDatum objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setQuantitationTypeCriteria(QuantitationTypeSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setQuantitationTypeCriteria(QuantitationTypeSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setQuantitationTypeDimension(QuantitationTypeDimension) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Sets the quantitationTypeDimension attribute.
setQuantitationTypeDimension(QuantitationTypeDimension) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Sets the quantitationTypeDimension attribute.
setQuantitationTypeId(Long) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
setQuantitationTypeId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setQuantitationTypeId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayDatumSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setQuantitationTypeId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setQuantitationTypeId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
setQuantitationTypeMapping(QuantitationTypeMapping) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Sets the quantitationTypeMapping attribute.
setQuantitationTypeMapping(QuantitationTypeMapping) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.Transformation
Sets the quantitationTypeMapping attribute.
setQuantitationTypeMaps(QuantitationTypeMap[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
Sets the quantitationTypeMaps attribute.
setQuantitationTypeMaps(QuantitationTypeMap[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMapping
Sets the quantitationTypeMaps attribute.
setQuantitationTypeMaps(QuantitationTypeMap[]) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Sets the quantitationTypeMaps attribute.
setQuantitationTypeMaps(QuantitationTypeMap[]) - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Sets the quantitationTypeMaps attribute.
setQuantitationTypeMapsCriteria(QuantitationTypeMapSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
 
setQuantitationTypeMapsCriteria(QuantitationTypeMapSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
 
setQuantitationTypeMapsCriteria(QuantitationTypeMapSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
Constrains the search for QuantitationTypeMapping objects to those associated with QuantitationTypeMap objects by the association and selected by the given QuantitationTypeMapSearchCriteria.
setQuantitationTypeMapsCriteria(QuantitationTypeMapSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
Constrains the search for QuantitationTypeMapping objects to those associated with QuantitationTypeMap objects by the association and selected by the given QuantitationTypeMapSearchCriteria.
setQuantitationTypeMapsId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
 
setQuantitationTypeMapsId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
 
setQuantitationTypeMapsId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap.id
setQuantitationTypeMapsId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMappingSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap.id
setQuantitationTypes(QuantitationType[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
Sets the quantitationTypes attribute.
setQuantitationTypes(QuantitationType[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeDimension
Sets the quantitationTypes attribute.
setQuantitationTypesCriteria(QuantitationTypeSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
setQuantitationTypesCriteria(QuantitationTypeSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
setQuantitationTypesCriteria(QuantitationTypeSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
Constrains the search for QuantitationTypeDimension objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setQuantitationTypesCriteria(QuantitationTypeSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
Constrains the search for QuantitationTypeDimension objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setQuantitationTypesId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
setQuantitationTypesId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
setQuantitationTypesId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setQuantitationTypesId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setRegions(SeqFeatureLocation[]) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
Sets the regions attribute.
setRegions(SeqFeatureLocation[]) - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeature
Sets the regions attribute.
setReleaseDate(Date) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
Sets the releaseDate attribute.
setReleaseDate(Date) - Method in interface gov.nih.nci.mageom.domain.Protocol.SoftwareApplication
Sets the releaseDate attribute.
setReleaseDate(Date) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setReleaseDate(Date, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setReleaseDate(Date) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.releaseDate
setReleaseDate(Date, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.releaseDate
setReplacedLength(Integer) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Sets the replacedLength attribute.
setReplacedLength(Integer) - Method in interface gov.nih.nci.mageom.domain.DesignElement.MismatchInformation
Sets the replacedLength attribute.
setReplacedLength(Integer) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
setReplacedLength(Integer, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
setReplacedLength(Integer) - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.replacedLength
setReplacedLength(Integer, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.replacedLength
setReplicateDescription(Description) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Sets the replicateDescription attribute.
setReplicateDescription(Description) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Sets the replicateDescription attribute.
setReporter(Reporter) - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureReporterMap
Sets the reporter attribute.
setReporter(Reporter) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
Sets the reporter attribute.
setReporter(Reporter) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
Sets the reporter attribute.
setReporter(Reporter) - Method in interface gov.nih.nci.mageom.domain.DesignElement.ReporterPosition
Sets the reporter attribute.
setReporterCompositeMaps(ReporterCompositeMap[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.CompositeSequence
Sets the reporterCompositeMaps attribute.
setReporterCompositeMaps(ReporterCompositeMap[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Sets the reporterCompositeMaps attribute.
setReporterCriteria(ReporterSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
Constrains the search for FeatureReporterMap objects to those associated with Reporter objects by the association and selected by the given ReporterSearchCriteria.
setReporterCriteria(ReporterSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
Constrains the search for FeatureReporterMap objects to those associated with Reporter objects by the association and selected by the given ReporterSearchCriteria.
setReporterCriteria(ReporterSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
 
setReporterCriteria(ReporterSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
 
setReporterCriteria(ReporterSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
 
setReporterCriteria(ReporterSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
 
setReporterCriteria(ReporterSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
Constrains the search for ReporterPosition objects to those associated with Reporter objects by the association and selected by the given ReporterSearchCriteria.
setReporterCriteria(ReporterSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
Constrains the search for ReporterPosition objects to those associated with Reporter objects by the association and selected by the given ReporterSearchCriteria.
setReporterGroups(ReporterGroup[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Sets the reporterGroups attribute.
setReporterGroups(ReporterGroup[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Sets the reporterGroups attribute.
setReporterGroupsCriteria(ReporterGroupSearchCriteria) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Constrains the search for ArrayDesign objects to those associated with ReporterGroup objects by the association and selected by the given ReporterGroupSearchCriteria.
setReporterGroupsCriteria(ReporterGroupSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Constrains the search for ArrayDesign objects to those associated with ReporterGroup objects by the association and selected by the given ReporterGroupSearchCriteria.
setReporterGroupsCriteria(ReporterGroupSearchCriteria) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setReporterGroupsCriteria(ReporterGroupSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setReporterGroupsId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ReporterGroup.id
setReporterGroupsId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ReporterGroup.id
setReporterGroupsId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setReporterGroupsId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setReporterId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
setReporterId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureReporterMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
setReporterId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
 
setReporterId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
 
setReporterId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
 
setReporterId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
 
setReporterId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
setReporterId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.ReporterPositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
setReporterName(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setReporterName(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
setReporterNames(String[]) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.enhanced.ArrayDesignReporterSummarySearchCriteria
Limits results to those with associated Reporter.name(s) that match.
setReporterNames(String[]) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummarySearchCriteriaImpl
 
setReporterPositionSources(ReporterPosition[]) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
Sets the reporterPositionSources attribute.
setReporterPositionSources(ReporterPosition[]) - Method in interface gov.nih.nci.mageom.domain.DesignElement.ReporterCompositeMap
Sets the reporterPositionSources attribute.
setReporters(Reporter[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
Sets the reporters attribute.
setReporters(Reporter[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ReporterGroup
Sets the reporters attribute.
setReporters(Reporter[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
Sets the reporters attribute.
setReporters(Reporter[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.ReporterDimension
Sets the reporters attribute.
setReportersCriteria(ReporterSearchCriteria) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
 
setReportersCriteria(ReporterSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
 
setReportersCriteria(ReporterSearchCriteria) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
Constrains the search for ReporterGroup objects to those associated with Reporter objects by the association and selected by the given ReporterSearchCriteria.
setReportersCriteria(ReporterSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
Constrains the search for ReporterGroup objects to those associated with Reporter objects by the association and selected by the given ReporterSearchCriteria.
setReportersCriteria(ReporterSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
 
setReportersCriteria(ReporterSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
 
setReportersCriteria(ReporterSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
Constrains the search for ReporterDimension objects to those associated with Reporter objects by the association and selected by the given ReporterSearchCriteria.
setReportersCriteria(ReporterSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
Constrains the search for ReporterDimension objects to those associated with Reporter objects by the association and selected by the given ReporterSearchCriteria.
setReportersId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
 
setReportersId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
 
setReportersId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
setReportersId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ReporterGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
setReportersId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
 
setReportersId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
 
setReportersId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
setReportersId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.ReporterDimensionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Reporter.id
setReportersSummary(List<ReporterSummary>) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
setReturnCount(Boolean) - Method in interface gov.nih.nci.common.search.Searchable
 
setReturnObjects(Boolean) - Method in interface gov.nih.nci.common.search.Searchable
 
setRoles(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Sets the roles attribute.
setRoles(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Sets the roles attribute.
setRow(Integer) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Sets the row attribute.
setRow(Integer) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Sets the row attribute.
setRow(Integer) - Method in interface gov.nih.nci.mageom.domain.DesignElement.FeatureLocation
Sets the row attribute.
setRow(Integer) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
Sets the row attribute.
setRow(Integer) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setRow(Integer, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setRow(Integer) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.row
setRow(Integer, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.row
setRow(Integer) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.row
setRow(Integer, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureLocationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.FeatureLocation.row
setRow(Integer) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
setRow(Integer, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
setScale(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Sets the scale attribute.
setScale(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Sets the scale attribute.
setScale(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Sets the scale attribute.
setScale(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
Sets the scale attribute.
setScaleId(Long) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
setSecuredElementId(String) - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
setSecuredElementId(String) - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
setSecuredElementId(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.SecurityBean
 
setSecurity(Security) - Method in interface gov.nih.nci.mageom.domain.Describable
Sets the security attribute.
setSecurity(Security) - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Sets the security attribute.
setSecurityCriteria(SecuritySearchCriteria) - Method in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
Constrains the search for Describable objects to those associated with Security objects by the association and selected by the given SecuritySearchCriteria.
setSecurityCriteria(SecuritySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
Constrains the search for Describable objects to those associated with Security objects by the association and selected by the given SecuritySearchCriteria.
setSecurityCriteria(SecuritySearchCriteria) - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
 
setSecurityCriteria(SecuritySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
 
setSecurityGroups(SecurityGroup[]) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Sets the securityGroups attribute.
setSecurityGroups(SecurityGroup[]) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Security
Sets the securityGroups attribute.
setSecurityGroupsCriteria(SecurityGroupSearchCriteria) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setSecurityGroupsCriteria(SecurityGroupSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setSecurityGroupsCriteria(SecurityGroupSearchCriteria) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Constrains the search for Security objects to those associated with SecurityGroup objects by the association and selected by the given SecurityGroupSearchCriteria.
setSecurityGroupsCriteria(SecurityGroupSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Constrains the search for Security objects to those associated with SecurityGroup objects by the association and selected by the given SecurityGroupSearchCriteria.
setSecurityGroupsId(Long) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setSecurityGroupsId(Long, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
setSecurityGroupsId(Long) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.SecurityGroup.id
setSecurityGroupsId(Long, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.SecuritySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.SecurityGroup.id
setSecurityId(Long) - Method in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Security.id
setSecurityId(Long, String) - Method in interface gov.nih.nci.mageom.search.DescribableSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Security.id
setSecurityId(Long) - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
 
setSecurityId(Long, String) - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
 
setSeqFeatures(SeqFeature[]) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the seqFeatures attribute.
setSeqFeatures(SeqFeature[]) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the seqFeatures attribute.
setSequence(String) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the sequence attribute.
setSequence(String) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the sequence attribute.
setSequenceDatabases(DatabaseEntry[]) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the sequenceDatabases attribute.
setSequenceDatabases(DatabaseEntry[]) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the sequenceDatabases attribute.
setSerialNumber(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.HardwareApplication
Sets the serialNumber attribute.
setSerialNumber(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
Sets the serialNumber attribute.
setSerialNumber(String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.HardwareApplication.serialNumber
setSerialNumber(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.HardwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.HardwareApplication.serialNumber
setSerialNumber(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
setSerialNumber(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
setSessionId(String) - Method in interface gov.nih.nci.common.search.session.SecureSession
Sets the internal ID of this session.
setSessionId(String) - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
setSessionId(String) - Method in interface gov.nih.nci.common.search.session.SessionObject
 
setSoftware(Software) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
Sets the software attribute.
setSoftware(Software) - Method in interface gov.nih.nci.mageom.domain.Protocol.SoftwareApplication
Sets the software attribute.
setSoftwareApplications(SoftwareApplication[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Sets the softwareApplications attribute.
setSoftwareApplications(SoftwareApplication[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.ProtocolApplication
Sets the softwareApplications attribute.
setSoftwareCriteria(SoftwareSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setSoftwareCriteria(SoftwareSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setSoftwareCriteria(SoftwareSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Constrains the search for SoftwareApplication objects to those associated with Software objects by the association and selected by the given SoftwareSearchCriteria.
setSoftwareCriteria(SoftwareSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Constrains the search for SoftwareApplication objects to those associated with Software objects by the association and selected by the given SoftwareSearchCriteria.
setSoftwareId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setSoftwareId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setSoftwareId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
setSoftwareId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
setSoftwareManufacturers(Contact[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Sets the softwareManufacturers attribute.
setSoftwareManufacturers(Contact[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.Software
Sets the softwareManufacturers attribute.
setSoftwareManufacturersCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setSoftwareManufacturersCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setSoftwareManufacturersCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Constrains the search for Software objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setSoftwareManufacturersCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Constrains the search for Software objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setSoftwareManufacturersId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setSoftwareManufacturersId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setSoftwareManufacturersId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setSoftwareManufacturersId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setSoftwares(Software[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Sets the softwares attribute.
setSoftwares(Software[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Sets the softwares attribute.
setSoftwares(Software[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Sets the softwares attribute.
setSoftwares(Software[]) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Sets the softwares attribute.
setSoftwares(Software[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Sets the softwares attribute.
setSoftwares(Software[]) - Method in interface gov.nih.nci.mageom.domain.Protocol.Software
Sets the softwares attribute.
setSoftwaresCriteria(SoftwareSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setSoftwaresCriteria(SoftwareSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setSoftwaresCriteria(SoftwareSearchCriteria) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setSoftwaresCriteria(SoftwareSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setSoftwaresCriteria(SoftwareSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Constrains the search for Protocol objects to those associated with Software objects by the association and selected by the given SoftwareSearchCriteria.
setSoftwaresCriteria(SoftwareSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Constrains the search for Protocol objects to those associated with Software objects by the association and selected by the given SoftwareSearchCriteria.
setSoftwaresCriteria(SoftwareSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Constrains the search for Software objects to those associated with Software objects by the association and selected by the given SoftwareSearchCriteria.
setSoftwaresCriteria(SoftwareSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Constrains the search for Software objects to those associated with Software objects by the association and selected by the given SoftwareSearchCriteria.
setSoftwaresId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setSoftwaresId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setSoftwaresId(Long) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setSoftwaresId(Long, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
setSoftwaresId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
setSoftwaresId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
setSoftwaresId(Long) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
setSoftwaresId(Long, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id
setSourceBioAssays(BioAssay[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayMap
Sets the sourceBioAssays attribute.
setSourceBioAssays(BioAssay[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
Sets the sourceBioAssays attribute.
setSourceBioAssaysCriteria(BioAssaySearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Constrains the search for BioAssayMap objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setSourceBioAssaysCriteria(BioAssaySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Constrains the search for BioAssayMap objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setSourceBioAssaysCriteria(BioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setSourceBioAssaysCriteria(BioAssaySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setSourceBioAssaysId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setSourceBioAssaysId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setSourceBioAssaysId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setSourceBioAssaysId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
setSourceBioMaterialMeasurements(BioMaterialMeasurement[]) - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayCreation
Sets the sourceBioMaterialMeasurements attribute.
setSourceBioMaterialMeasurements(BioMaterialMeasurement[]) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Sets the sourceBioMaterialMeasurements attribute.
setSourceBioMaterialMeasurements(BioMaterialMeasurement[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Sets the sourceBioMaterialMeasurements attribute.
setSourceBioMaterialMeasurements(BioMaterialMeasurement[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.Treatment
Sets the sourceBioMaterialMeasurements attribute.
setSourceContact(Contact[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioSource
Sets the sourceContact attribute.
setSourceContact(Contact[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
Sets the sourceContact attribute.
setSourceContactCriteria(ContactSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
Constrains the search for BioSource objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setSourceContactCriteria(ContactSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
Constrains the search for BioSource objects to those associated with Contact objects by the association and selected by the given ContactSearchCriteria.
setSourceContactCriteria(ContactSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
 
setSourceContactCriteria(ContactSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
 
setSourceContactId(Long) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setSourceContactId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id
setSourceContactId(Long) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
 
setSourceContactId(Long, String) - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
 
setSourcesQuantitationType(QuantitationType[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
Sets the sourcesQuantitationType attribute.
setSourcesQuantitationType(QuantitationType[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap
Sets the sourcesQuantitationType attribute.
setSourcesQuantitationTypeCriteria(QuantitationTypeSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setSourcesQuantitationTypeCriteria(QuantitationTypeSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setSourcesQuantitationTypeCriteria(QuantitationTypeSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Constrains the search for QuantitationTypeMap objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setSourcesQuantitationTypeCriteria(QuantitationTypeSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Constrains the search for QuantitationTypeMap objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setSourcesQuantitationTypeId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setSourcesQuantitationTypeId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setSourcesQuantitationTypeId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setSourcesQuantitationTypeId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setSourceType(String) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
setSpacingBetweenCols(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Sets the spacingBetweenCols attribute.
setSpacingBetweenCols(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Sets the spacingBetweenCols attribute.
setSpacingBetweenCols(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setSpacingBetweenCols(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setSpacingBetweenCols(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.spacingBetweenCols
setSpacingBetweenCols(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.spacingBetweenCols
setSpacingBetweenRows(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Sets the spacingBetweenRows attribute.
setSpacingBetweenRows(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout
Sets the spacingBetweenRows attribute.
setSpacingBetweenRows(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setSpacingBetweenRows(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
setSpacingBetweenRows(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.spacingBetweenRows
setSpacingBetweenRows(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.spacingBetweenRows
setSpacingsBetweenZonesX(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Sets the spacingsBetweenZonesX attribute.
setSpacingsBetweenZonesX(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Sets the spacingsBetweenZonesX attribute.
setSpacingsBetweenZonesX(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setSpacingsBetweenZonesX(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setSpacingsBetweenZonesX(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.spacingsBetweenZonesX
setSpacingsBetweenZonesX(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.spacingsBetweenZonesX
setSpacingsBetweenZonesY(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Sets the spacingsBetweenZonesY attribute.
setSpacingsBetweenZonesY(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Sets the spacingsBetweenZonesY attribute.
setSpacingsBetweenZonesY(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setSpacingsBetweenZonesY(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setSpacingsBetweenZonesY(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.spacingsBetweenZonesY
setSpacingsBetweenZonesY(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.spacingsBetweenZonesY
setSpecies(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.DesignElementGroup
Sets the species attribute.
setSpecies(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
Sets the species attribute.
setSpecies(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the species attribute.
setSpecies(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the species attribute.
setStart(Integer) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
Sets the start attribute.
setStart(Integer) - Method in interface gov.nih.nci.mageom.domain.BioSequence.SequencePosition
Sets the start attribute.
setStart(Integer) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
setStart(Integer, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
setStart(Integer) - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.start
setStart(Integer, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.start
setStartAt(int) - Method in class gov.nih.nci.common.query.impl.QueryImpl
 
setStartAt(int) - Method in interface gov.nih.nci.common.query.Query
 
setStartCoord(Integer) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Sets the startCoord attribute.
setStartCoord(Integer) - Method in interface gov.nih.nci.mageom.domain.DesignElement.MismatchInformation
Sets the startCoord attribute.
setStartCoord(Integer) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
setStartCoord(Integer, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
setStartCoord(Integer) - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.startCoord
setStartCoord(Integer, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.startCoord
setStrandType(String) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Sets the strandType attribute.
setStrandType(String) - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation
Sets the strandType attribute.
setStrandType(String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
 
setStrandType(String, String, String) - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
 
setStrandType(String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureLocationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation.strandType
setStrandType(String, String, String) - Method in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureLocationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation.strandType
setSubregions(SeqFeatureLocation[]) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Sets the subregions attribute.
setSubregions(SeqFeatureLocation[]) - Method in interface gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation
Sets the subregions attribute.
setSubstrateType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the substrateType attribute.
setSubstrateType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the substrateType attribute.
setSummaryStatistics(NameValueType[]) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayData
Sets the summaryStatistics attribute.
setSummaryStatistics(NameValueType[]) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Sets the summaryStatistics attribute.
setSurfaceType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
Sets the surfaceType attribute.
setSurfaceType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.PhysicalArrayDesign
Sets the surfaceType attribute.
setTarget(PhysicalBioAssay) - Method in interface gov.nih.nci.mageom.domain.BioAssay.BioAssayTreatment
Sets the target attribute.
setTarget(PhysicalBioAssay) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
Sets the target attribute.
setTargetQuantitationType(QuantitationType) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
Sets the targetQuantitationType attribute.
setTargetQuantitationType(QuantitationType) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.QuantitationTypeMap
Sets the targetQuantitationType attribute.
setTargetQuantitationType(QuantitationType) - Method in interface gov.nih.nci.mageom.domain.QuantitationType.ConfidenceIndicator
Sets the targetQuantitationType attribute.
setTargetQuantitationType(QuantitationType) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
Sets the targetQuantitationType attribute.
setTargetQuantitationTypeCriteria(QuantitationTypeSearchCriteria) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setTargetQuantitationTypeCriteria(QuantitationTypeSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setTargetQuantitationTypeCriteria(QuantitationTypeSearchCriteria) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Constrains the search for QuantitationTypeMap objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setTargetQuantitationTypeCriteria(QuantitationTypeSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Constrains the search for QuantitationTypeMap objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setTargetQuantitationTypeCriteria(QuantitationTypeSearchCriteria) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
Constrains the search for ConfidenceIndicator objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setTargetQuantitationTypeCriteria(QuantitationTypeSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
Constrains the search for ConfidenceIndicator objects to those associated with QuantitationType objects by the association and selected by the given QuantitationTypeSearchCriteria.
setTargetQuantitationTypeCriteria(QuantitationTypeSearchCriteria) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
 
setTargetQuantitationTypeCriteria(QuantitationTypeSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
 
setTargetQuantitationTypeId(Long) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setTargetQuantitationTypeId(Long, String) - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
setTargetQuantitationTypeId(Long) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setTargetQuantitationTypeId(Long, String) - Method in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setTargetQuantitationTypeId(Long) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setTargetQuantitationTypeId(Long, String) - Method in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id
setTargetQuantitationTypeId(Long) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
 
setTargetQuantitationTypeId(Long, String) - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
 
setTechnologyType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.FeatureGroup
Sets the technologyType attribute.
setTechnologyType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Sets the technologyType attribute.
setText(String) - Method in interface gov.nih.nci.mageom.domain.Description.Description
Sets the text attribute.
setText(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Sets the text attribute.
setText(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Sets the text attribute.
setText(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Sets the text attribute.
setText(String) - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.text
setText(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.text
setText(String) - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
setText(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
setText(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setText(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setText(String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.text
setText(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.text
setTissueType(String) - Method in interface gov.nih.nci.mageom.search.Experiment.enhanced.ExperimentSearchCriteria
Limits results to those Experiment(s) with BioMaterial(s) having characteristics, OntologyEntry(s), with a category of 'OrganismPart'
setTissueType(String) - Method in class gov.nih.nci.mageom.search.Experiment.enhanced.impl.ExperimentSearchCriteriaImpl
 
setTitle(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the title attribute.
setTitle(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the title attribute.
setTitle(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Sets the title attribute.
setTitle(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Sets the title attribute.
setTitle(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.title
setTitle(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.title
setTitle(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setTitle(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setTitle(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setTitle(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
setTitle(String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.title
setTitle(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.title
setTolerance(Float) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayManufacture
Sets the tolerance attribute.
setTolerance(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Sets the tolerance attribute.
setTolerance(Float) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.tolerance
setTolerance(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.tolerance
setTolerance(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setTolerance(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
setTollFreePhone(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Sets the tollFreePhone attribute.
setTollFreePhone(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Sets the tollFreePhone attribute.
setTollFreePhone(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.tollFreePhone
setTollFreePhone(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.tollFreePhone
setTollFreePhone(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setTollFreePhone(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setTopLevelBioAssays(BioAssay[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Sets the topLevelBioAssays attribute.
setTopLevelBioAssays(BioAssay[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Sets the topLevelBioAssays attribute.
setTopLevelBioAssaysCriteria(BioAssaySearchCriteria) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
Constrains the search for ExperimentDesign objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setTopLevelBioAssaysCriteria(BioAssaySearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
Constrains the search for ExperimentDesign objects to those associated with BioAssay objects by the association and selected by the given BioAssaySearchCriteria.
setTopLevelBioAssaysCriteria(BioAssaySearchCriteria) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
 
setTopLevelBioAssaysCriteria(BioAssaySearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
 
setTopLevelBioAssaysId(Long) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setTopLevelBioAssaysId(Long, String) - Method in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id
setTopLevelBioAssaysId(Long) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
 
setTopLevelBioAssaysId(Long, String) - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
 
setTreatments(Treatment[]) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioMaterial
Sets the treatments attribute.
setTreatments(Treatment[]) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Sets the treatments attribute.
setType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.BioAssay.DerivedBioAssay
Sets the type attribute.
setType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Sets the type attribute.
setType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.BioMaterial.BioSample
Sets the type attribute.
setType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
Sets the type attribute.
setType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.BioSequence.BioSequence
Sets the type attribute.
setType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Sets the type attribute.
setType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Sets the type attribute.
setType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Sets the type attribute.
setType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Sets the type attribute.
setType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Sets the type attribute.
setType(String) - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Sets the type attribute.
setType(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Sets the type attribute.
setType(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Sets the type attribute.
setType(String) - Method in interface gov.nih.nci.mageom.domain.NameValueType
Sets the type attribute.
setType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Protocol.Hardware
Sets the type attribute.
setType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Sets the type attribute.
setType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Sets the type attribute.
setType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Sets the type attribute.
setType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Protocol.Protocol
Sets the type attribute.
setType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Protocol.Software
Sets the type attribute.
setType(String) - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
setType(String, String, String) - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
setType(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setType(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setType(String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.type
setType(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.type
setType(String) - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.type
setType(String, String, String) - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.type
setTypes(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.DesignElementGroup
Sets the types attribute.
setTypes(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
Sets the types attribute.
setTypes(OntologyEntry[]) - Method in interface gov.nih.nci.mageom.domain.Experiment.ExperimentDesign
Sets the types attribute.
setTypes(OntologyEntry[]) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Sets the types attribute.
setUnit(Unit) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Sets the unit attribute.
setUnit(Unit) - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Sets the unit attribute.
setUnitName(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
Sets the unitName attribute.
setUnitName(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.Unit
Sets the unitName attribute.
setUnitName(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
 
setUnitName(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
 
setUnitName(String) - Method in interface gov.nih.nci.mageom.search.Measurement.UnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Unit.unitName
setUnitName(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.UnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Unit.unitName
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.ConcentrationUnit
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.DistanceUnit
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.MassUnit
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.QuantityUnit
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.TemperatureUnit
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.TimeUnit
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.VolumeUnit
Sets the unitNameCV attribute.
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.search.Measurement.ConcentrationUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.ConcentrationUnit.unitNameCV
setUnitNameCV(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.ConcentrationUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.ConcentrationUnit.unitNameCV
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.search.Measurement.DistanceUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.unitNameCV
setUnitNameCV(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.DistanceUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.unitNameCV
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
 
setUnitNameCV(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
 
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
 
setUnitNameCV(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
 
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
 
setUnitNameCV(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
 
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
 
setUnitNameCV(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
 
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
 
setUnitNameCV(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
 
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
 
setUnitNameCV(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
 
setUnitNameCV(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
 
setUnitNameCV(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
 
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.search.Measurement.MassUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.MassUnit.unitNameCV
setUnitNameCV(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.MassUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.MassUnit.unitNameCV
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.search.Measurement.QuantityUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.QuantityUnit.unitNameCV
setUnitNameCV(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.QuantityUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.QuantityUnit.unitNameCV
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.search.Measurement.TemperatureUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TemperatureUnit.unitNameCV
setUnitNameCV(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.TemperatureUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TemperatureUnit.unitNameCV
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.search.Measurement.TimeUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TimeUnit.unitNameCV
setUnitNameCV(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.TimeUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TimeUnit.unitNameCV
setUnitNameCV(String) - Method in interface gov.nih.nci.mageom.search.Measurement.VolumeUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.VolumeUnit.unitNameCV
setUnitNameCV(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.VolumeUnitSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.VolumeUnit.unitNameCV
setUpperLeftX(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Sets the upperLeftX attribute.
setUpperLeftX(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Sets the upperLeftX attribute.
setUpperLeftX(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setUpperLeftX(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setUpperLeftX(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.upperLeftX
setUpperLeftX(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.upperLeftX
setUpperLeftY(Float) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Sets the upperLeftY attribute.
setUpperLeftY(Float) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.Zone
Sets the upperLeftY attribute.
setUpperLeftY(Float) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setUpperLeftY(Float, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
setUpperLeftY(Float) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.upperLeftY
setUpperLeftY(Float, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.upperLeftY
setURI(String) - Method in interface gov.nih.nci.mageom.domain.AuditAndSecurity.Contact
Sets the URI attribute.
setURI(String) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Sets the URI attribute.
setURI(String) - Method in interface gov.nih.nci.mageom.domain.BioAssay.Image
Sets the URI attribute.
setURI(String) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Sets the URI attribute.
setURI(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the URI attribute.
setURI(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the URI attribute.
setURI(String) - Method in interface gov.nih.nci.mageom.domain.Description.Database
Sets the URI attribute.
setURI(String) - Method in interface gov.nih.nci.mageom.domain.Description.DatabaseEntry
Sets the URI attribute.
setURI(String) - Method in interface gov.nih.nci.mageom.domain.Description.Description
Sets the URI attribute.
setURI(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Sets the URI attribute.
setURI(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Sets the URI attribute.
setURI(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Sets the URI attribute.
setURI(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Sets the URI attribute.
setURI(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.Parameterizable
Sets the URI attribute.
setURI(String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.URI
setURI(String, String, String) - Method in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.URI
setURI(String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setURI(String, String, String) - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
setURI(String) - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Image.URI
setURI(String, String, String) - Method in interface gov.nih.nci.mageom.search.BioAssay.ImageSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Image.URI
setURI(String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
 
setURI(String, String, String) - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
 
setURI(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.URI
setURI(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.URI
setURI(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setURI(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setURI(String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.URI
setURI(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.URI
setURI(String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.URI
setURI(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.URI
setURI(String) - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.URI
setURI(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.URI
setURI(String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setURI(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
setURI(String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setURI(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setURI(String) - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
setURI(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
setURI(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
 
setURI(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
 
setURI(String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameterizable.URI
setURI(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterizableSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameterizable.URI
setUserAccess(UserAccess) - Method in class gov.nih.nci.mageom.util.PermissionObject
sets the data permissions
setValue(Object) - Method in interface gov.nih.nci.mageom.domain.BioAssayData.BioAssayDatum
Sets the value attribute.
setValue(Object) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Sets the value attribute.
setValue(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Sets the value attribute.
setValue(String) - Method in interface gov.nih.nci.mageom.domain.Description.OntologyEntry
Sets the value attribute.
setValue(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.Experiment.FactorValue
Sets the value attribute.
setValue(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
Sets the value attribute.
setValue(String) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Sets the value attribute.
setValue(String) - Method in interface gov.nih.nci.mageom.domain.HigherLevelAnalysis.NodeValue
Sets the value attribute.
setValue(String) - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Sets the value attribute.
setValue(String) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Sets the value attribute.
setValue(String) - Method in interface gov.nih.nci.mageom.domain.Measurement.Measurement
Sets the value attribute.
setValue(String) - Method in interface gov.nih.nci.mageom.domain.NameValueType
Sets the value attribute.
setValue(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
Sets the value attribute.
setValue(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.ParameterValue
Sets the value attribute.
setValue(String) - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
setValue(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
setValue(String) - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.value
setValue(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.value
setValue(String) - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
setValue(String, String, String) - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
setValue(String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setValue(String, String, String) - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
setValue(String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.value
setValue(String, String, String) - Method in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.value
setValue(String) - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.value
setValue(String, String, String) - Method in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.value
setValue(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
setValue(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
setValue(String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ParameterValue.value
setValue(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ParameterValue.value
setVersion(String) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
Sets the version attribute.
setVersion(String) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Sets the version attribute.
setVersion(String) - Method in interface gov.nih.nci.mageom.domain.Description.Database
Sets the version attribute.
setVersion(String) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Sets the version attribute.
setVersion(String) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
Sets the version attribute.
setVersion(String) - Method in interface gov.nih.nci.mageom.domain.Protocol.SoftwareApplication
Sets the version attribute.
setVersion(String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.version
setVersion(String, String, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.version
setVersion(String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setVersion(String, String, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
setVersion(String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.version
setVersion(String, String, String) - Method in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.version
setVersion(String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setVersion(String, String, String) - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
setVersion(String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setVersion(String, String, String) - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
setVersion(String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.version
setVersion(String, String, String) - Method in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.version
setVolume(String) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the volume attribute.
setVolume(String) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the volume attribute.
setVolume(String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.volume
setVolume(String, String, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.volume
setVolume(String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setVolume(String, String, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setWarningType(OntologyEntry) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Sets the warningType attribute.
setWarningType(OntologyEntry) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Reporter
Sets the warningType attribute.
setWidth(Float) - Method in interface gov.nih.nci.mageom.domain.Array.ArrayGroup
Sets the width attribute.
setWidth(Float) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Sets the width attribute.
setWidth(Float) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.width
setWidth(Float, String) - Method in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.width
setWidth(Float) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setWidth(Float, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
setWriterEncoding(String) - Static method in class gov.nih.nci.mageom.util.DOMWriter
 
setX(Float) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
Sets the x attribute.
setX(Float) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Position
Sets the x attribute.
setX(Float) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
setX(Float, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
setX(Float) - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.x
setX(Float, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.x
setXlinkNameSpace(Element) - Static method in class gov.nih.nci.mageom.util.XMLUtility
 
setY(Float) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
Sets the y attribute.
setY(Float) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Position
Sets the y attribute.
setY(Float) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
setY(Float, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
setY(Float) - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.y
setY(Float, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.y
setYear(Date) - Method in interface gov.nih.nci.mageom.domain.BQS.BibliographicReference
Sets the year attribute.
setYear(Date) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Sets the year attribute.
setYear(Date) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.year
setYear(Date, String) - Method in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.year
setYear(Date) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setYear(Date, String) - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
setZone(Zone) - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
Sets the zone attribute.
setZone(Zone) - Method in interface gov.nih.nci.mageom.domain.Array.ZoneDefect
Sets the zone attribute.
setZone(Zone) - Method in interface gov.nih.nci.mageom.domain.DesignElement.Feature
Sets the zone attribute.
setZone(Zone) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Sets the zone attribute.
setZoneCriteria(ZoneSearchCriteria) - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
 
setZoneCriteria(ZoneSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
 
setZoneCriteria(ZoneSearchCriteria) - Method in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
Constrains the search for ZoneDefect objects to those associated with Zone objects by the association and selected by the given ZoneSearchCriteria.
setZoneCriteria(ZoneSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
Constrains the search for ZoneDefect objects to those associated with Zone objects by the association and selected by the given ZoneSearchCriteria.
setZoneCriteria(ZoneSearchCriteria) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Constrains the search for Feature objects to those associated with Zone objects by the association and selected by the given ZoneSearchCriteria.
setZoneCriteria(ZoneSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Constrains the search for Feature objects to those associated with Zone objects by the association and selected by the given ZoneSearchCriteria.
setZoneCriteria(ZoneSearchCriteria) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setZoneCriteria(ZoneSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setZoneGroups(ZoneGroup[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
Sets the zoneGroups attribute.
setZoneGroups(ZoneGroup[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.PhysicalArrayDesign
Sets the zoneGroups attribute.
setZoneGroupsCriteria(ZoneGroupSearchCriteria) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
 
setZoneGroupsCriteria(ZoneGroupSearchCriteria, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
 
setZoneGroupsCriteria(ZoneGroupSearchCriteria) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
Constrains the search for PhysicalArrayDesign objects to those associated with ZoneGroup objects by the association and selected by the given ZoneGroupSearchCriteria.
setZoneGroupsCriteria(ZoneGroupSearchCriteria, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
Constrains the search for PhysicalArrayDesign objects to those associated with ZoneGroup objects by the association and selected by the given ZoneGroupSearchCriteria.
setZoneGroupsId(Long) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
 
setZoneGroupsId(Long, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
 
setZoneGroupsId(Long) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.id
setZoneGroupsId(Long, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.id
setZoneId(Long) - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
 
setZoneId(Long, String) - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
 
setZoneId(Long) - Method in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id
setZoneId(Long, String) - Method in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id
setZoneId(Long) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id
setZoneId(Long, String) - Method in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id
setZoneId(Long) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setZoneId(Long, String) - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
setZoneLayout(ZoneLayout) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Sets the zoneLayout attribute.
setZoneLayout(ZoneLayout) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Sets the zoneLayout attribute.
setZoneLocations(Zone[]) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Sets the zoneLocations attribute.
setZoneLocations(Zone[]) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Sets the zoneLocations attribute.
setZonesPerX(Integer) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Sets the zonesPerX attribute.
setZonesPerX(Integer) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Sets the zonesPerX attribute.
setZonesPerX(Integer) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setZonesPerX(Integer, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setZonesPerX(Integer) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.zonesPerX
setZonesPerX(Integer, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.zonesPerX
setZonesPerY(Integer) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Sets the zonesPerY attribute.
setZonesPerY(Integer) - Method in interface gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup
Sets the zonesPerY attribute.
setZonesPerY(Integer) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setZonesPerY(Integer, String) - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
setZonesPerY(Integer) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.zonesPerY
setZonesPerY(Integer, String) - Method in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
Sets the value of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.zonesPerY
shouldRemoveInheritance(String, String) - Method in class gov.nih.nci.common.persistence.ojb.DefaultOJBUtils
 
shouldRemoveInheritance(String, String) - Method in interface gov.nih.nci.common.persistence.ojb.OJBUtils
 
shouldRemoveInheritance(String, String) - Method in class gov.nih.nci.mageom.persistence.ojb.MAGEOJBUtils
 
shutdown() - Method in class gov.nih.nci.common.remote.rmi.RMIBinder
 
SHUTDOWN_MESSAGE - Static variable in class gov.nih.nci.common.remote.rmi.RMIBinder.ShutdownThread
 
software - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
DOCUMENT ME
Software - Interface in gov.nih.nci.mageom.domain.Protocol
Software represents the software used.
SoftwareApplication - Interface in gov.nih.nci.mageom.domain.Protocol
The use of a piece of software with the requisite Parameters and ParameterValues.
SoftwareApplicationImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
The use of a piece of software with the requisite Parameters and ParameterValues.
SoftwareApplicationImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
Default constructor
softwareApplications - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
DOCUMENT ME
softwareApplicationsCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
The count of SoftwareApplication objects.
SoftwareApplicationSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for SoftwareApplication objects.
SoftwareApplicationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for SoftwareApplication objects.
SoftwareApplicationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
softwareId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
The internal ID of the associated software object.
SOFTWAREID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id.
SoftwareImpl - Class in gov.nih.nci.mageom.domain.Protocol.impl
Software represents the software used.
SoftwareImpl() - Constructor for class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Default constructor
softwareManufacturers - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
DOCUMENT ME
SoftwareManufacturers - Class in gov.nih.nci.mageom.persistence.ojb.mn
 
SoftwareManufacturers() - Constructor for class gov.nih.nci.mageom.persistence.ojb.mn.SoftwareManufacturers
 
softwareManufacturersCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
The count of Contact objects.
SOFTWAREMANUFACTURERSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
softwares - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
DOCUMENT ME
softwares - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
DOCUMENT ME
softwares - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
DOCUMENT ME
softwaresCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
The count of Software objects.
softwaresCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
The count of Software objects.
softwaresCount - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
The count of Software objects.
SoftwareSearchCriteria - Interface in gov.nih.nci.mageom.search.Protocol
Represents a query for Software objects.
SoftwareSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Protocol.impl
Represents a query for Software objects.
SoftwareSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
SOFTWARESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id.
SOFTWARESID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.SoftwareSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Software.id.
sortAttributes(NamedNodeMap) - Method in class gov.nih.nci.mageom.util.DOMWriter
Returns a sorted list of attributes.
sourceBioAssays - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
DOCUMENT ME
sourceBioAssaysCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
The count of BioAssay objects.
SOURCEBIOASSAYSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.BioAssayMapSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id.
sourceBioMaterialMeasurements - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
DOCUMENT ME
sourceBioMaterialMeasurements - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
DOCUMENT ME
sourceBioMaterialMeasurementsCount - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
The count of BioMaterialMeasurement objects.
sourceBioMaterialMeasurementsCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
The count of BioMaterialMeasurement objects.
sourceContact - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
DOCUMENT ME
sourceContactCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
The count of Contact objects.
SOURCECONTACTID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioMaterial.BioSourceSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.id.
sourcesQuantitationType - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
DOCUMENT ME
sourcesQuantitationTypeCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
The count of QuantitationType objects.
SOURCESQUANTITATIONTYPEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id.
spacingBetweenCols - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Spacing between the columns.
SPACINGBETWEENCOLS_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.spacingBetweenCols.
spacingBetweenRows - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Spacing between the rows.
SPACINGBETWEENROWS_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneLayoutSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneLayout.spacingBetweenRows.
spacingsBetweenZonesX - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Spacing between zones, if applicable.
SPACINGSBETWEENZONESX_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.spacingsBetweenZonesX.
spacingsBetweenZonesY - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Spacing between zones, if applicable.
SPACINGSBETWEENZONESY_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.spacingsBetweenZonesY.
SpecializedQuantitationType - Interface in gov.nih.nci.mageom.domain.QuantitationType
User defined quantitation type.
SpecializedQuantitationTypeImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
User defined quantitation type.
SpecializedQuantitationTypeImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
Default constructor
SpecializedQuantitationTypeSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for SpecializedQuantitationType objects.
SpecializedQuantitationTypeSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for SpecializedQuantitationType objects.
SpecializedQuantitationTypeSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.SpecializedQuantitationTypeSearchCriteriaImpl
 
species - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
DOCUMENT ME
species - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
DOCUMENT ME
speciesId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
The internal ID of the associated species object.
speciesId - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
The internal ID of the associated species object.
sqlToJava(Object) - Method in class gov.nih.nci.caarray.services.util.ojb.conversions.Boolean2IntFieldConversion
 
sqlToJava(Object) - Method in class gov.nih.nci.caarray.services.util.ojb.conversions.Long2LongObjectFieldConversion
 
sqlToJava(Object) - Method in class gov.nih.nci.common.persistence.conversions.Double2FloatConversion
 
sqlToJava(Object) - Method in class gov.nih.nci.common.persistence.conversions.String2DateConversion
 
StandardQuantitationType - Interface in gov.nih.nci.mageom.domain.QuantitationType
Superclass for the named quantitation type.
StandardQuantitationTypeImpl - Class in gov.nih.nci.mageom.domain.QuantitationType.impl
Superclass for the named quantitation type.
StandardQuantitationTypeImpl() - Constructor for class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
Default constructor
StandardQuantitationTypeSearchCriteria - Interface in gov.nih.nci.mageom.search.QuantitationType
Represents a query for StandardQuantitationType objects.
StandardQuantitationTypeSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.QuantitationType.impl
Represents a query for StandardQuantitationType objects.
StandardQuantitationTypeSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.QuantitationType.impl.StandardQuantitationTypeSearchCriteriaImpl
 
start(String, String) - Method in interface gov.nih.nci.common.search.session.SecureSession
 
start(String, String) - Method in class gov.nih.nci.common.search.session.SecureSessionImpl
 
start - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
The location of the base, for nucleotides, that the SeqFeature starts.
START_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.SequencePositionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SequencePosition.start.
startAt - Variable in class gov.nih.nci.common.query.impl.QueryImpl
 
startCoord - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Offset into the sequence that the mismatch occurs.
STARTCOORD_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.MismatchInformationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.MismatchInformation.startCoord.
startSession(SearchSession) - Method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
startSession(String, String) - Method in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
startSession(String, String) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
startSession(String, String) - Method in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemote
 
startSession(String, String) - Method in interface gov.nih.nci.common.remote.rmi.RMISecureSessionManagerRemoteIF
 
startSession(String, String) - Method in interface gov.nih.nci.common.search.session.SecureSessionManager
 
startSession(String, String) - Method in class gov.nih.nci.common.search.session.SecureSessionManagerImpl
 
startup() - Method in class gov.nih.nci.common.remote.rmi.RMIBinder
 
strandType - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Indicates the direction and/or type of the SeqFeature, i.e.
STRANDTYPE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioSequence.SeqFeatureLocationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioSequence.SeqFeatureLocation.strandType.
String2DateConversion - Class in gov.nih.nci.common.persistence.conversions
 
String2DateConversion() - Constructor for class gov.nih.nci.common.persistence.conversions.String2DateConversion
 
SubClassFetchPath - Class in gov.nih.nci.common.query
 
SubClassFetchPath(String, String) - Constructor for class gov.nih.nci.common.query.SubClassFetchPath
 
subCriterionGroup - Variable in class gov.nih.nci.common.query.impl.CriterionGroupImpl
 
subregions - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
DOCUMENT ME
subregionsCount - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
The count of SeqFeatureLocation objects.
substrateType - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
DOCUMENT ME
substrateTypeId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
The internal ID of the associated substrateType object.
summaryStatistics - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
DOCUMENT ME
summaryStatisticsCount - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
The count of NameValueType objects.
surfaceType - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
DOCUMENT ME
surfaceTypeId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
The internal ID of the associated surfaceType object.

T

target - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
DOCUMENT ME
targetId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
The internal ID of the associated target object.
targetQuantitationType - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
DOCUMENT ME
targetQuantitationType - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
DOCUMENT ME
targetQuantitationTypeId - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
The internal ID of the associated targetQuantitationType object.
targetQuantitationTypeId - Variable in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
The internal ID of the associated targetQuantitationType object.
TARGETQUANTITATIONTYPEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssayData.QuantitationTypeMapSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id.
TARGETQUANTITATIONTYPEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.QuantitationType.ConfidenceIndicatorSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.QuantitationType.QuantitationType.id.
technologyType - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
DOCUMENT ME
technologyTypeId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
The internal ID of the associated technologyType object.
TemperatureUnit - Interface in gov.nih.nci.mageom.domain.Measurement
Temperature
TemperatureUnitImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
Temperature
TemperatureUnitImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
Default constructor
TemperatureUnitSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for TemperatureUnit objects.
TemperatureUnitSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for TemperatureUnit objects.
TemperatureUnitSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
 
text - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
The description.
text - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
The text description of the Protocol.
TEXT_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.text.
TEXT_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.text.
TimeUnit - Interface in gov.nih.nci.mageom.domain.Measurement
Time
TimeUnitImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
Time
TimeUnitImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
Default constructor
TimeUnitSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for TimeUnit objects.
TimeUnitSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for TimeUnit objects.
TimeUnitSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
 
title - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
title - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
The title of the Protocol
TITLE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.title.
TITLE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ProtocolSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Protocol.title.
toArray() - Method in class gov.nih.nci.mageom.util.cubereader.Cube
 
toHeavyXML(XMLInterface[], Node, Document) - Static method in class gov.nih.nci.mageom.util.XMLUtility
 
tolerance - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
The allowable error of a feature printed to its intended position.
TOLERANCE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayManufactureSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayManufacture.tolerance.
tollFreePhone - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
DOCUMENT ME
TOLLFREEPHONE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.tollFreePhone.
topLevelBioAssays - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
DOCUMENT ME
topLevelBioAssaysCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
The count of BioAssay objects.
TOPLEVELBIOASSAYSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Experiment.ExperimentDesignSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.BioAssay.id.
toSelectedXML(XMLInterface[], ArrayList, Node, Document) - Static method in class gov.nih.nci.mageom.util.XMLUtility
 
toString() - Method in class gov.nih.nci.common.persistence.enhanced.ArrayDesign.ArrayDesignReporterQueryResultBean
 
toString() - Method in class gov.nih.nci.common.persistence.RandomGUID
 
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureDeviationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.FiducialSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ArrayDesignReporterSummaryBean
 
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.enhanced.impl.ReporterSummaryBean
 
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.DesignElementGroupSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayCreationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.HybridizationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageAcquisitionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssay.impl.PhysicalBioAssaySearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDataSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataCubeSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataTuplesSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataValuesSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DerivedBioAssayDataSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMapSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.MeasuredBioAssayDataSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioEvent.impl.BioEventSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioEvent.impl.MapSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSampleSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.DesignElementSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureInformationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentalFactorSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeContentsSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.impl.ExtendableSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableApplicationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.DerivedSignalSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ErrorSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.ExpectedValueSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.FailedSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.MeasuredSignalSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.PresentAbsentSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.PValueSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.RatioSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.SpecializedQuantitationTypeSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.search.QuantitationType.impl.StandardQuantitationTypeSearchCriteriaImpl
Returns a String representation of this object suitable for console display.
toString() - Method in class gov.nih.nci.mageom.util.cubereader.Cube
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
 
toXML(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
 
toXML(XMLInterface[], Node, Document) - Static method in class gov.nih.nci.mageom.util.XMLUtility
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
 
toXMLDoc(Document) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
 
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureDeviationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.ArrayManufactureImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.FeatureDefectImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.FiducialImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSBiomaterialImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.ManufactureLIMSImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.PositionDeltaImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.CompositeGroupImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.FeatureGroupImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ReporterGroupImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.AuditImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.OrganizationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.PersonImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityGroupImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.SecurityImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayCreationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ChannelImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.FeatureExtractionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.HybridizationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageAcquisitionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssay.impl.PhysicalBioAssayImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDimensionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMappingImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataCubeImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataTuplesImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioDataValuesImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.CompositeSequenceDimensionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DerivedBioAssayDataImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementDimensionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMappingImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.FeatureDimensionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.MeasuredBioAssayDataImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeDimensionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMapImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.QuantitationTypeMappingImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.ReporterDimensionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialMeasurementImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSourceImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.CompoundMeasurementImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.LabeledExtractImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SeqFeatureLocationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Description.impl.ExternalReferenceImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeCompositeMapImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositePositionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.CompositeSequenceImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.DesignElementImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureInformationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureLocationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.MismatchInformationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterCompositeMapImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterPositionImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentalFactorImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeContentsImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.impl.DescribableImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.impl.ExtendableImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareApplicationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableApplicationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolApplicationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ConfidenceIndicatorImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ErrorImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.ExpectedValueImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.FailedImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.MeasuredSignalImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PresentAbsentImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.PValueImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.RatioImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.SpecializedQuantitationTypeImpl
Returns an XML representation of the object.
toXMLProcessor(Document, ArrayList) - Method in class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
Returns an XML representation of the object.
Transformation - Interface in gov.nih.nci.mageom.domain.BioAssayData
The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays.
TransformationImpl - Class in gov.nih.nci.mageom.domain.BioAssayData.impl
The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays.
TransformationImpl() - Constructor for class gov.nih.nci.mageom.domain.BioAssayData.impl.TransformationImpl
Default constructor
TransformationSearchCriteria - Interface in gov.nih.nci.mageom.search.BioAssayData
Represents a query for Transformation objects.
TransformationSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioAssayData.impl
Represents a query for Transformation objects.
TransformationSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
 
translate(Collection, Class) - Static method in class gov.nih.nci.common.persistence.enhanced.EnhancedQueryRunner
 
translate(Collection, Class) - Static method in class gov.nih.nci.common.util.ArrayUtils
 
Treatment - Interface in gov.nih.nci.mageom.domain.BioMaterial
The process by which a biomaterial is created (from source biomaterials).
TreatmentImpl - Class in gov.nih.nci.mageom.domain.BioMaterial.impl
The process by which a biomaterial is created (from source biomaterials).
TreatmentImpl() - Constructor for class gov.nih.nci.mageom.domain.BioMaterial.impl.TreatmentImpl
Default constructor
treatments - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
DOCUMENT ME
treatmentsCount - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioMaterialImpl
The count of Treatment objects.
TreatmentSearchCriteria - Interface in gov.nih.nci.mageom.search.BioMaterial
Represents a query for Treatment objects.
TreatmentSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.BioMaterial.impl
Represents a query for Treatment objects.
TreatmentSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
 
type - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
DOCUMENT ME
type - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
DOCUMENT ME
type - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
DOCUMENT ME
type - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
DOCUMENT ME
type - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
DOCUMENT ME
type - Variable in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
The type of the key.
type - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
The type of measurement, for instance if the measurement is five feet, it can be either absolute feet tall) or change (five feet further along).
type - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
DOCUMENT ME
type - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
DOCUMENT ME
type - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
DOCUMENT ME
TYPE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.type.
TYPE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.type.
typeId - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.DerivedBioAssayImpl
The internal ID of the associated type object.
typeId - Variable in class gov.nih.nci.mageom.domain.BioMaterial.impl.BioSampleImpl
The internal ID of the associated type object.
typeId - Variable in class gov.nih.nci.mageom.domain.BioSequence.impl.BioSequenceImpl
The internal ID of the associated type object.
typeId - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
The internal ID of the associated type object.
typeId - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
The internal ID of the associated type object.
typeId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.HardwareImpl
The internal ID of the associated type object.
typeId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ProtocolImpl
The internal ID of the associated type object.
typeId - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareImpl
The internal ID of the associated type object.
types - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
DOCUMENT ME
types - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
DOCUMENT ME
typesCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.DesignElementGroupImpl
The count of OntologyEntry objects.
typesCount - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.ExperimentDesignImpl
The count of OntologyEntry objects.

U

unit - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
DOCUMENT ME
Unit - Interface in gov.nih.nci.mageom.domain.Measurement
The unit is a strict enumeration of types.
unitId - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
The internal ID of the associated unit object.
UnitImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
The unit is a strict enumeration of types.
UnitImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
Default constructor
unitName - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.UnitImpl
The name of the unit.
UNITNAME_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.UnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Unit.unitName.
unitNameCV - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.ConcentrationUnitImpl
DOCUMENT ME
unitNameCV - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.DistanceUnitImpl
DOCUMENT ME
unitNameCV - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.MassUnitImpl
DOCUMENT ME
unitNameCV - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.QuantityUnitImpl
DOCUMENT ME
unitNameCV - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.TemperatureUnitImpl
DOCUMENT ME
unitNameCV - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.TimeUnitImpl
DOCUMENT ME
unitNameCV - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
DOCUMENT ME
UNITNAMECV_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.ConcentrationUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.ConcentrationUnit.unitNameCV.
UNITNAMECV_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.DistanceUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.DistanceUnit.unitNameCV.
UNITNAMECV_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.MassUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.MassUnit.unitNameCV.
UNITNAMECV_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.QuantityUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.QuantityUnit.unitNameCV.
UNITNAMECV_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.TemperatureUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TemperatureUnit.unitNameCV.
UNITNAMECV_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.TimeUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.TimeUnit.unitNameCV.
UNITNAMECV_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.VolumeUnitSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.VolumeUnit.unitNameCV.
UnitSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for Unit objects.
UnitSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for Unit objects.
UnitSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
 
unresolve(String) - Method in class gov.nih.nci.common.persistence.PropertyFileQueryNameResolver
 
unresolve(String) - Method in interface gov.nih.nci.common.persistence.QueryNameResolver
 
update(Object) - Method in class gov.nih.nci.common.persistence.PersistenceManagerQueryHandler
 
upperLeftX - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Boundary vertical upper left position relative to (0,0).
UPPERLEFTX_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.upperLeftX.
upperLeftY - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Boundary horizontal upper left position relative to (0,0).
UPPERLEFTY_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.upperLeftY.
URI - Variable in class gov.nih.nci.mageom.domain.AuditAndSecurity.impl.ContactImpl
DOCUMENT ME
URI - Variable in class gov.nih.nci.mageom.domain.BioAssay.impl.ImageImpl
The file location in which an image may be found.
URI - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
URI - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseEntryImpl
The location of the record.
URI - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
The location of the Database.
URI - Variable in class gov.nih.nci.mageom.domain.Description.impl.DescriptionImpl
A reference to the location and type of an outside resource.
URI - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterizableImpl
Where an instantiated Parameterizable is located.
URI_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.AuditAndSecurity.ContactSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.AuditAndSecurity.Contact.URI.
URI_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BioAssay.ImageSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BioAssay.Image.URI.
URI_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.URI.
URI_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseEntrySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.DatabaseEntry.URI.
URI_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.URI.
URI_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DescriptionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.Description.URI.
URI_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ParameterizableSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.Parameterizable.URI.
URL_FILE - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
Index for file in parsed URL results.
URL_HOST - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
Index for host in parsed URL results.
URL_PASSWORD - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
Index for password in parsed URL results.
URL_PATH - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
Index for path in parsed URL results.
URL_USERNAME - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
Index for username in parsed URL results.
UserAccess - Interface in gov.nih.nci.mageom.util
The interface for user access allows for the passing of user access information between NIC objects

V

value - Variable in class gov.nih.nci.common.query.impl.CriterionImpl
 
value - Variable in class gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDatumImpl
The datum value.
value - Variable in class gov.nih.nci.mageom.domain.Description.impl.OntologyEntryImpl
The value for this entry in this category.
value - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
DOCUMENT ME
value - Variable in class gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.NodeValueImpl
The value for this NodeValue.
value - Variable in class gov.nih.nci.mageom.domain.impl.NameValueTypeImpl
The value of the name.
value - Variable in class gov.nih.nci.mageom.domain.Measurement.impl.MeasurementImpl
The value of the measurement.
value - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.ParameterValueImpl
The value of the parameter.
VALUE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.OntologyEntrySearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.OntologyEntry.value.
VALUE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Measurement.MeasurementSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Measurement.Measurement.value.
VALUE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.NameValueTypeSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.NameValueType.value.
VALUE_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.ParameterValueSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.ParameterValue.value.
valueAfterMD5 - Variable in class gov.nih.nci.common.persistence.RandomGUID
 
valueBeforeMD5 - Variable in class gov.nih.nci.common.persistence.RandomGUID
 
valueId - Variable in class gov.nih.nci.mageom.domain.Experiment.impl.FactorValueImpl
The internal ID of the associated value object.
version - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
The version of this design.
version - Variable in class gov.nih.nci.mageom.domain.Description.impl.DatabaseImpl
The version for which a DatabaseReference applies.
version - Variable in class gov.nih.nci.mageom.domain.Protocol.impl.SoftwareApplicationImpl
The version of the software.
VERSION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ArrayDesignSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign.version.
VERSION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Description.DatabaseSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Description.Database.version.
VERSION_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Protocol.SoftwareApplicationSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Protocol.SoftwareApplication.version.
volume - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
VOLUME_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.volume.
VolumeUnit - Interface in gov.nih.nci.mageom.domain.Measurement
Volume
VolumeUnitImpl - Class in gov.nih.nci.mageom.domain.Measurement.impl
Volume
VolumeUnitImpl() - Constructor for class gov.nih.nci.mageom.domain.Measurement.impl.VolumeUnitImpl
Default constructor
VolumeUnitSearchCriteria - Interface in gov.nih.nci.mageom.search.Measurement
Represents a query for VolumeUnit objects.
VolumeUnitSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Measurement.impl
Represents a query for VolumeUnit objects.
VolumeUnitSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
 

W

warningType - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
DOCUMENT ME
warningTypeId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.ReporterImpl
The internal ID of the associated warningType object.
width - Variable in class gov.nih.nci.mageom.domain.Array.impl.ArrayGroupImpl
The width of the platform
WIDTH_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ArrayGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.Array.ArrayGroup.width.

X

x - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
The horizontal distance from the upper left corner of the array.
X_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.x.
XMLDispatcher - Class in gov.nih.nci.mageom.ui.domain
 
XMLDispatcher() - Constructor for class gov.nih.nci.mageom.ui.domain.XMLDispatcher
 
xmlStart(XMLInterface) - Static method in class gov.nih.nci.mageom.util.XMLUtility
 
XMLUtility - Class in gov.nih.nci.mageom.util
XMLUtility Utilities for working with XMLInterface objects.
XMLUtility() - Constructor for class gov.nih.nci.mageom.util.XMLUtility
 

Y

y - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.PositionImpl
The vertical distance from the upper left corner of the array.
Y_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.PositionSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.DesignElement.Position.y.
year - Variable in class gov.nih.nci.mageom.domain.BQS.impl.BibliographicReferenceImpl
DOCUMENT ME
YEAR_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.BQS.BibliographicReferenceSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.BQS.BibliographicReference.year.

Z

zone - Variable in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
DOCUMENT ME
Zone - Interface in gov.nih.nci.mageom.domain.ArrayDesign
Specifies the location of a zone on an array.
zone - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
DOCUMENT ME
ZoneDefect - Interface in gov.nih.nci.mageom.domain.Array
Stores the defect information for a zone.
ZoneDefectImpl - Class in gov.nih.nci.mageom.domain.Array.impl
Stores the defect information for a zone.
ZoneDefectImpl() - Constructor for class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
Default constructor
ZoneDefectSearchCriteria - Interface in gov.nih.nci.mageom.search.Array
Represents a query for ZoneDefect objects.
ZoneDefectSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.Array.impl
Represents a query for ZoneDefect objects.
ZoneDefectSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
 
ZoneGroup - Interface in gov.nih.nci.mageom.domain.ArrayDesign
Specifies a repeating area on an array.
ZoneGroupImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
Specifies a repeating area on an array.
ZoneGroupImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
Default constructor
zoneGroups - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
DOCUMENT ME
zoneGroupsCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
The count of ZoneGroup objects.
ZoneGroupSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for ZoneGroup objects.
ZoneGroupSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for ZoneGroup objects.
ZoneGroupSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
ZONEGROUPSID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.PhysicalArrayDesignSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.id.
zoneId - Variable in class gov.nih.nci.mageom.domain.Array.impl.ZoneDefectImpl
The internal ID of the associated zone object.
zoneId - Variable in class gov.nih.nci.mageom.domain.DesignElement.impl.FeatureImpl
The internal ID of the associated zone object.
ZONEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.Array.ZoneDefectSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id.
ZONEID_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.DesignElement.FeatureSearchCriteria
The String name of the criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.Zone.id.
ZoneImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
Specifies the location of a zone on an array.
ZoneImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneImpl
Default constructor
zoneLayout - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
DOCUMENT ME
ZoneLayout - Interface in gov.nih.nci.mageom.domain.ArrayDesign
Specifies the layout of features in a rectangular grid.
zoneLayoutId - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
The internal ID of the associated zoneLayout object.
ZoneLayoutImpl - Class in gov.nih.nci.mageom.domain.ArrayDesign.impl
Specifies the layout of features in a rectangular grid.
ZoneLayoutImpl() - Constructor for class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneLayoutImpl
Default constructor
ZoneLayoutSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for ZoneLayout objects.
ZoneLayoutSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for ZoneLayout objects.
ZoneLayoutSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
zoneLocations - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
DOCUMENT ME
zoneLocationsCount - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
The count of Zone objects.
ZoneSearchCriteria - Interface in gov.nih.nci.mageom.search.ArrayDesign
Represents a query for Zone objects.
ZoneSearchCriteriaImpl - Class in gov.nih.nci.mageom.search.ArrayDesign.impl
Represents a query for Zone objects.
ZoneSearchCriteriaImpl() - Constructor for class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
zonesPerX - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
The number of zones on the x-axis.
ZONESPERX_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.zonesPerX.
zonesPerY - Variable in class gov.nih.nci.mageom.domain.ArrayDesign.impl.ZoneGroupImpl
The number of zones on the y-axis.
ZONESPERY_ATTRIBUTE - Static variable in interface gov.nih.nci.mageom.search.ArrayDesign.ZoneGroupSearchCriteria
This String name of criterion corresponding to gov.nih.nci.mageom.domain.ArrayDesign.ZoneGroup.zonesPerY.

_

_active - Variable in class gov.nih.nci.common.search.session.SecureSessionImpl
 
_beanPkgNames - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
 
_defaultRoles - Static variable in class gov.nih.nci.common.persistence.SecurityFilter
 
_handler - Static variable in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerRemote
 
_instance - Static variable in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
_instance - Static variable in class gov.nih.nci.common.persistence.SecurityManagerFactory
 
_instance - Static variable in class gov.nih.nci.common.search.session.SecureSessionFactory
 
_instance - Static variable in class gov.nih.nci.common.search.session.SecureSessionManagerFactory
 
_instance - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
 
_instanceMgr - Variable in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
_localMgrClassName - Variable in class gov.nih.nci.common.search.session.SecureSessionManagerFactory
 
_maxSessionAge - Variable in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
_mgr - Variable in class gov.nih.nci.common.persistence.SecurityFilter
 
_mgr - Static variable in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
_mgr - Variable in class gov.nih.nci.common.search.session.SecureSessionImpl
 
_mgrUrl - Static variable in class gov.nih.nci.common.remote.rmi.RMISecureSessionManagerProxy
 
_props - Variable in class gov.nih.nci.common.persistence.PropertyFileQueryNameResolver
 
_remoteMgrClassName - Variable in class gov.nih.nci.common.search.session.SecureSessionManagerFactory
 
_roles - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
 
_runner - Static variable in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
_scPkgNames - Static variable in class gov.nih.nci.mageom.util.MAGEUtilities
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.ArrayGroupSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureDeviationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.ArrayManufactureSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.ArraySearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.FeatureDefectSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.FiducialSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSBiomaterialSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.ManufactureLIMSSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.PositionDeltaSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Array.impl.ZoneDefectSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.ArrayDesignSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.CompositeGroupSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.DesignElementGroupSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.FeatureGroupSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.PhysicalArrayDesignSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.ReporterGroupSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneGroupSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneLayoutSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.ArrayDesign.impl.ZoneSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.AuditSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.ContactSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.OrganizationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.PersonSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecurityGroupSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.AuditAndSecurity.impl.SecuritySearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayCreationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssaySearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.BioAssayTreatmentSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.ChannelSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.DerivedBioAssaySearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.FeatureExtractionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.HybridizationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.ImageAcquisitionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.ImageSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.MeasuredBioAssaySearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssay.impl.PhysicalBioAssaySearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDataSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDatumSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayDimensionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMappingSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.BioAssayMapSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataCubeSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataTuplesSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.BioDataValuesSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.CompositeSequenceDimensionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.DerivedBioAssayDataSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementDimensionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMappingSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.DesignElementMapSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.FeatureDimensionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.MeasuredBioAssayDataSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeDimensionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMappingSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.QuantitationTypeMapSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.ReporterDimensionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioAssayData.impl.TransformationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioEvent.impl.BioEventSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioEvent.impl.MapSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialMeasurementSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioMaterial.impl.BioMaterialSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSampleSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioMaterial.impl.BioSourceSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundMeasurementSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioMaterial.impl.CompoundSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioMaterial.impl.LabeledExtractSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioMaterial.impl.TreatmentSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioSequence.impl.BioSequenceSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureLocationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioSequence.impl.SeqFeatureSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BioSequence.impl.SequencePositionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.BQS.impl.BibliographicReferenceSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Description.impl.DatabaseEntrySearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Description.impl.DatabaseSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Description.impl.DescriptionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Description.impl.ExternalReferenceSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Description.impl.OntologyEntrySearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeCompositeMapSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.CompositePositionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.CompositeSequenceSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.DesignElementSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureInformationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureLocationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureReporterMapSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.FeatureSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.MismatchInformationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.PositionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterCompositeMapSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterPositionSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.DesignElement.impl.ReporterSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentalFactorSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentDesignSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Experiment.impl.ExperimentSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Experiment.impl.FactorValueSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.BioAssayDataClusterSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeContentsSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.HigherLevelAnalysis.impl.NodeValueSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.impl.DescribableSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.impl.ExtendableSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.impl.IdentifiableSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.impl.NameValueTypeSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.ConcentrationUnitSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.DistanceUnitSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.MassUnitSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.MeasurementSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.QuantityUnitSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.TemperatureUnitSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.TimeUnitSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.UnitSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Measurement.impl.VolumeUnitSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.HardwareApplicationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.HardwareSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableApplicationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.ParameterizableSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.ParameterSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.ParameterValueSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolApplicationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.ProtocolSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareApplicationSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.Protocol.impl.SoftwareSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.ConfidenceIndicatorSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.DerivedSignalSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.ErrorSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.ExpectedValueSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.FailedSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.MeasuredSignalSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.PresentAbsentSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.PValueSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.QuantitationTypeSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.RatioSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.SpecializedQuantitationTypeSearchCriteriaImpl
 
_scUtils - Variable in class gov.nih.nci.mageom.search.QuantitationType.impl.StandardQuantitationTypeSearchCriteriaImpl
 
_searchLocation - Variable in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy
 
_server - Static variable in class gov.nih.nci.common.remote.rmi.RMISearchCriteriaHandlerProxy
 
_sessionId - Variable in class gov.nih.nci.common.search.session.SecureSessionImpl
 
_sessionPersistence - Variable in class gov.nih.nci.common.search.session.SecureSessionManagerImpl
 
_sessions - Variable in class gov.nih.nci.common.persistence.SecureSessionPersistence
 
_startTime - Variable in class gov.nih.nci.common.search.session.SecureSessionImpl
 

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