|
||||||||||
| PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
| SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD | |||||||||
java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.BioSequence.impl.SequencePositionImpl
public class SequencePositionImpl
Designates the position of the Feature in its BioSequence.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected java.lang.Integer |
end
The location of the base, for nucleotides, that the SeqFeature ends. |
protected java.lang.Integer |
start
The location of the base, for nucleotides, that the SeqFeature starts. |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
SequencePositionImpl()
Default constructor |
|
| Method Summary | |
|---|---|
java.lang.Integer |
getEnd()
Returns the value of this SequencePosition object's end attribute. |
java.lang.Integer |
getStart()
Returns the value of this SequencePosition object's start attribute. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
SequencePosition[] |
searchSequencePositions(SequencePositionSearchCriteria criteria)
Returns an array of SequencePosition objects that
satisfy the given SequencePositionSearchCriteria. |
void |
setEnd(java.lang.Integer p_end)
Sets the end attribute. |
void |
setStart(java.lang.Integer p_start)
Sets the start attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected java.lang.Integer start
protected java.lang.Integer end
| Constructor Detail |
|---|
public SequencePositionImpl()
| Method Detail |
|---|
protected void init()
init in class ExtendableImpl
public SequencePosition[] searchSequencePositions(SequencePositionSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
SequencePosition objects that
satisfy the given SequencePositionSearchCriteria.
criteria - The SequencePositionSearchCriteria
which represents a query for SequencePosition objects.
SequencePosition objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setStart(java.lang.Integer p_start)
SequencePosition object.
setStart in interface SequencePositionp_start - The new value for start.SequencePosition.getStart()public java.lang.Integer getStart()
SequencePositionSequencePosition object's start attribute.
Description of start:
The location of the base, for nucleotides, that the SeqFeature starts.
getStart in interface SequencePositionint The value of start.SequencePosition.getStart()public void setEnd(java.lang.Integer p_end)
SequencePosition object.
setEnd in interface SequencePositionp_end - The new value for end.SequencePosition.getEnd()public java.lang.Integer getEnd()
SequencePositionSequencePosition object's end attribute.
Description of end:
The location of the base, for nucleotides, that the SeqFeature ends.
getEnd in interface SequencePositionint The value of end.SequencePosition.getEnd()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class ExtendableImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class ExtendableImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class ExtendableImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class ExtendableImplpublic java.lang.String toString()
toString in class ExtendableImpl
|
||||||||||
| PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
| SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD | |||||||||