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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
public class QuantitationTypeImpl
A method for calculating a single datum of the matrix (e.g. raw intensity, background, error).
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected Channel |
channel
DOCUMENT ME |
protected java.lang.Long |
channelId
The internal ID of the associated channel object. |
protected ConfidenceIndicator[] |
confidenceIndicators
DOCUMENT ME |
protected int |
confidenceIndicatorsCount
The count of ConfidenceIndicator objects. |
protected OntologyEntry |
dataType
DOCUMENT ME |
protected java.lang.Long |
dataTypeId
The internal ID of the associated dataType object. |
protected java.lang.Boolean |
isBackground
Indicates whether the quantitation has been measured from the background or from the feature |
protected QuantitationTypeMap[] |
quantitationTypeMaps
DOCUMENT ME |
protected int |
quantitationTypeMapsCount
The count of QuantitationTypeMap objects. |
protected OntologyEntry |
scale
DOCUMENT ME |
protected java.lang.Long |
scaleId
The internal ID of the associated scale object. |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
QuantitationTypeImpl()
Default constructor |
|
| Method Summary | |
|---|---|
Channel |
getChannel()
Returns the value of this QuantitationType object's channel attribute. |
java.lang.Long |
getChannelId()
|
ConfidenceIndicator[] |
getConfidenceIndicators()
Returns the value of this QuantitationType object's confidenceIndicators attribute. |
int |
getConfidenceIndicatorsCount()
Returns the count of all ConfidenceIndicator
associated with this QuantitationType object. |
OntologyEntry |
getDataType()
Returns the value of this QuantitationType object's dataType attribute. |
java.lang.Long |
getDataTypeId()
|
java.lang.Boolean |
getIsBackground()
Returns the value of this QuantitationType object's isBackground attribute. |
QuantitationTypeMap[] |
getQuantitationTypeMaps()
Returns the value of this QuantitationType object's quantitationTypeMaps attribute. |
int |
getQuantitationTypeMapsCount()
Returns the count of all QuantitationTypeMap
associated with this QuantitationType object. |
OntologyEntry |
getScale()
Returns the value of this QuantitationType object's scale attribute. |
java.lang.Long |
getScaleId()
|
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
QuantitationType[] |
searchQuantitationTypes(QuantitationTypeSearchCriteria criteria)
Returns an array of QuantitationType objects that
satisfy the given QuantitationTypeSearchCriteria. |
void |
setChannel(Channel p_channel)
Sets the channel attribute. |
void |
setChannelId(java.lang.Long channelId)
|
void |
setConfidenceIndicators(ConfidenceIndicator[] p_confidenceIndicators)
Sets the confidenceIndicators attribute. |
void |
setDataType(OntologyEntry p_dataType)
Sets the dataType attribute. |
void |
setDataTypeId(java.lang.Long dataTypeId)
|
void |
setIsBackground(java.lang.Boolean p_isBackground)
Sets the isBackground attribute. |
void |
setQuantitationTypeMaps(QuantitationTypeMap[] p_quantitationTypeMaps)
Sets the quantitationTypeMaps attribute. |
void |
setScale(OntologyEntry p_scale)
Sets the scale attribute. |
void |
setScaleId(java.lang.Long scaleId)
|
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected java.lang.Boolean isBackground
protected Channel channel
protected java.lang.Long channelId
protected int quantitationTypeMapsCount
protected QuantitationTypeMap[] quantitationTypeMaps
protected int confidenceIndicatorsCount
protected ConfidenceIndicator[] confidenceIndicators
protected OntologyEntry dataType
protected java.lang.Long dataTypeId
protected OntologyEntry scale
protected java.lang.Long scaleId
| Constructor Detail |
|---|
public QuantitationTypeImpl()
| Method Detail |
|---|
protected void init()
init in class IdentifiableImpl
public QuantitationType[] searchQuantitationTypes(QuantitationTypeSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
QuantitationType objects that
satisfy the given QuantitationTypeSearchCriteria.
criteria - The QuantitationTypeSearchCriteria
which represents a query for QuantitationType objects.
QuantitationType objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setIsBackground(java.lang.Boolean p_isBackground)
QuantitationType object.
setIsBackground in interface QuantitationTypep_isBackground - The new value for isBackground.QuantitationType.getIsBackground()public java.lang.Boolean getIsBackground()
QuantitationTypeQuantitationType object's isBackground attribute.
Description of isBackground:
Indicates whether the quantitation has been measured from the background or from the feature itself.
getIsBackground in interface QuantitationTypeboolean The value of isBackground.QuantitationType.getIsBackground()public void setChannel(Channel p_channel)
QuantitationType object.
setChannel in interface QuantitationTypep_channel - The new value for channel.QuantitationType.getChannel()public Channel getChannel()
QuantitationTypeQuantitationType object's channel attribute.
getChannel in interface QuantitationTypegov.nih.nci.mageom.bean.BioAssay.Channel The value of channel.QuantitationType.getChannel()public void setQuantitationTypeMaps(QuantitationTypeMap[] p_quantitationTypeMaps)
QuantitationType object.
setQuantitationTypeMaps in interface QuantitationTypep_quantitationTypeMaps - The new value for quantitationTypeMaps.QuantitationType.getQuantitationTypeMaps()public QuantitationTypeMap[] getQuantitationTypeMaps()
QuantitationTypeQuantitationType object's quantitationTypeMaps attribute.
getQuantitationTypeMaps in interface QuantitationTypegov.nih.nci.mageom.bean.BioAssayData.QuantitationTypeMap[] The value of quantitationTypeMaps.QuantitationType.getQuantitationTypeMaps()public void setConfidenceIndicators(ConfidenceIndicator[] p_confidenceIndicators)
QuantitationType object.
setConfidenceIndicators in interface QuantitationTypep_confidenceIndicators - The new value for confidenceIndicators.QuantitationType.getConfidenceIndicators()public ConfidenceIndicator[] getConfidenceIndicators()
QuantitationTypeQuantitationType object's confidenceIndicators attribute.
getConfidenceIndicators in interface QuantitationTypegov.nih.nci.mageom.bean.QuantitationType.ConfidenceIndicator[] The value of confidenceIndicators.QuantitationType.getConfidenceIndicators()public void setDataType(OntologyEntry p_dataType)
QuantitationType object.
setDataType in interface QuantitationTypep_dataType - The new value for dataType.QuantitationType.getDataType()public OntologyEntry getDataType()
QuantitationTypeQuantitationType object's dataType attribute.
getDataType in interface QuantitationTypegov.nih.nci.mageom.bean.Description.OntologyEntry The value of dataType.QuantitationType.getDataType()public void setScale(OntologyEntry p_scale)
QuantitationType object.
setScale in interface QuantitationTypep_scale - The new value for scale.QuantitationType.getScale()public OntologyEntry getScale()
QuantitationTypeQuantitationType object's scale attribute.
getScale in interface QuantitationTypegov.nih.nci.mageom.bean.Description.OntologyEntry The value of scale.QuantitationType.getScale()public int getQuantitationTypeMapsCount()
QuantitationTypeMap
associated with this QuantitationType object.
QuantitationType.getQuantitationTypeMaps()public int getConfidenceIndicatorsCount()
ConfidenceIndicator
associated with this QuantitationType object.
QuantitationType.getConfidenceIndicators()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class IdentifiableImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class IdentifiableImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class IdentifiableImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class IdentifiableImplpublic java.lang.String toString()
toString in class IdentifiableImplpublic java.lang.Long getChannelId()
public void setChannelId(java.lang.Long channelId)
public java.lang.Long getDataTypeId()
public void setDataTypeId(java.lang.Long dataTypeId)
public java.lang.Long getScaleId()
public void setScaleId(java.lang.Long scaleId)
|
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