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public interface MismatchInformation
Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence.
| Method Summary | |
|---|---|
java.lang.String |
getNewSequence()
Returns the value of this MismatchInformation object's newSequence attribute. |
java.lang.Integer |
getReplacedLength()
Returns the value of this MismatchInformation object's replacedLength attribute. |
java.lang.Integer |
getStartCoord()
Returns the value of this MismatchInformation object's startCoord attribute. |
void |
setNewSequence(java.lang.String p_newSequence)
Sets the newSequence attribute. |
void |
setReplacedLength(java.lang.Integer p_replacedLength)
Sets the replacedLength attribute. |
void |
setStartCoord(java.lang.Integer p_startCoord)
Sets the startCoord attribute. |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Method Detail |
|---|
void setStartCoord(java.lang.Integer p_startCoord)
MismatchInformation object.
p_startCoord - The new value for startCoord.getStartCoord()java.lang.Integer getStartCoord()
MismatchInformation object's startCoord attribute.
Description of startCoord:
Offset into the sequence that the mismatch occurs.
int The value of startCoord.void setNewSequence(java.lang.String p_newSequence)
MismatchInformation object.
p_newSequence - The new value for newSequence.getNewSequence()java.lang.String getNewSequence()
MismatchInformation object's newSequence attribute.
Description of newSequence:
The sequence that replaces the specified sequence starting at start_coord.
String The value of newSequence.void setReplacedLength(java.lang.Integer p_replacedLength)
MismatchInformation object.
p_replacedLength - The new value for replacedLength.getReplacedLength()java.lang.Integer getReplacedLength()
MismatchInformation object's replacedLength attribute.
Description of replacedLength:
Length of the original sequence that is replaced. A deletion is specified when the length of the newSequence
is less than the replacedLength.
int The value of replacedLength.
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