gov.nih.nci.mageom.domain.DesignElement.impl
Class FeatureReporterMapImpl

java.lang.Object
  extended by gov.nih.nci.mageom.domain.impl.MAGEOMObject
      extended by gov.nih.nci.mageom.domain.impl.ExtendableImpl
          extended by gov.nih.nci.mageom.domain.impl.DescribableImpl
              extended by gov.nih.nci.mageom.domain.impl.IdentifiableImpl
                  extended by gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
                      extended by gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
                          extended by gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
                              extended by gov.nih.nci.mageom.domain.DesignElement.impl.FeatureReporterMapImpl
All Implemented Interfaces:
DesignElementMap, BioEvent, Map, Describable, FeatureReporterMap, Extendable, Identifiable, java.io.Serializable

public class FeatureReporterMapImpl
extends DesignElementMapImpl
implements FeatureReporterMap

A FeatureReporterMap is the description of how source features are transformed into a target reporter. These would map replicate features for a reporter to the reporter.

Version:
%I%, %G%
See Also:
Serialized Form

Field Summary
protected static java.util.ArrayList allAssociationMethods
           
protected static java.util.Hashtable associationMethods
           
protected  FeatureInformation[] featureInformationSources
          DOCUMENT ME
protected  int featureInformationSourcesCount
          The count of FeatureInformation objects.
protected  Reporter reporter
          DOCUMENT ME
protected  java.lang.Long reporterId
          The internal ID of the associated reporter object.
 
Fields inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
protocolApplications, protocolApplicationsCount
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
identifier, name
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
propertySets, propertySetsCount, securedElementId
 
Constructor Summary
FeatureReporterMapImpl()
          Default constructor
 
Method Summary
 FeatureInformation[] getFeatureInformationSources()
          Returns the value of this FeatureReporterMap object's featureInformationSources attribute.
 int getFeatureInformationSourcesCount()
          Returns the count of all FeatureInformation associated with this FeatureReporterMap object.
 Reporter getReporter()
          Returns the value of this FeatureReporterMap object's reporter attribute.
 java.util.Hashtable getXMLMethodDescriptors()
          Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
protected  void init()
           
 FeatureReporterMap[] searchFeatureReporterMaps(FeatureReporterMapSearchCriteria criteria)
          Returns an array of FeatureReporterMap objects that satisfy the given FeatureReporterMapSearchCriteria.
 void setFeatureInformationSources(FeatureInformation[] p_featureInformationSources)
          Sets the featureInformationSources attribute.
 void setReporter(Reporter p_reporter)
          Sets the reporter attribute.
 java.lang.String toString()
          Returns a String representation of this object suitable for console display.
 org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc, java.util.ArrayList fillOutValues)
          Returns an XML representation of the object.
 
Methods inherited from class gov.nih.nci.mageom.domain.BioAssayData.impl.DesignElementMapImpl
searchDesignElementMaps
 
Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
searchMaps
 
Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
getProtocolApplications, getProtocolApplicationsCount, searchBioEvents, setProtocolApplications
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
getIdentifier, getName, searchIdentifiables, setIdentifier, setName
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject
getId, getIsEditable, setId
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface gov.nih.nci.mageom.domain.BioEvent.BioEvent
getProtocolApplications, setProtocolApplications
 
Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from interface gov.nih.nci.mageom.domain.Describable
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from interface gov.nih.nci.mageom.domain.Extendable
getPropertySets, setPropertySets
 

Field Detail

allAssociationMethods

protected static java.util.ArrayList allAssociationMethods

associationMethods

protected static java.util.Hashtable associationMethods

featureInformationSourcesCount

protected int featureInformationSourcesCount
The count of FeatureInformation objects.


featureInformationSources

protected FeatureInformation[] featureInformationSources
DOCUMENT ME


reporter

protected Reporter reporter
DOCUMENT ME


reporterId

protected java.lang.Long reporterId
The internal ID of the associated reporter object.

Constructor Detail

FeatureReporterMapImpl

public FeatureReporterMapImpl()
Default constructor

Method Detail

init

protected void init()
Overrides:
init in class DesignElementMapImpl

searchFeatureReporterMaps

public FeatureReporterMap[] searchFeatureReporterMaps(FeatureReporterMapSearchCriteria criteria)
                                               throws gov.nih.nci.common.search.SearchException
Returns an array of FeatureReporterMap objects that satisfy the given FeatureReporterMapSearchCriteria.

Parameters:
criteria - The FeatureReporterMapSearchCriteria which represents a query for FeatureReporterMap objects.
Returns:
An array of FeatureReporterMap objects.
Throws:
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchException

setFeatureInformationSources

public void setFeatureInformationSources(FeatureInformation[] p_featureInformationSources)
Sets the featureInformationSources attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a FeatureReporterMap object.

Specified by:
setFeatureInformationSources in interface FeatureReporterMap
Parameters:
p_featureInformationSources - The new value for featureInformationSources.
See Also:
FeatureReporterMap.getFeatureInformationSources()

getFeatureInformationSources

public FeatureInformation[] getFeatureInformationSources()
Description copied from interface: FeatureReporterMap
Returns the value of this FeatureReporterMap object's featureInformationSources attribute.

Specified by:
getFeatureInformationSources in interface FeatureReporterMap
Returns:
gov.nih.nci.mageom.bean.DesignElement.FeatureInformation[] The value of featureInformationSources.
See Also:
FeatureReporterMap.getFeatureInformationSources()

setReporter

public void setReporter(Reporter p_reporter)
Sets the reporter attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a FeatureReporterMap object.

Specified by:
setReporter in interface FeatureReporterMap
Parameters:
p_reporter - The new value for reporter.
See Also:
FeatureReporterMap.getReporter()

getReporter

public Reporter getReporter()
Description copied from interface: FeatureReporterMap
Returns the value of this FeatureReporterMap object's reporter attribute.

Specified by:
getReporter in interface FeatureReporterMap
Returns:
gov.nih.nci.mageom.bean.DesignElement.Reporter The value of reporter.
See Also:
FeatureReporterMap.getReporter()

getFeatureInformationSourcesCount

public int getFeatureInformationSourcesCount()
Returns the count of all FeatureInformation associated with this FeatureReporterMap object.

Returns:
the count
See Also:
FeatureReporterMap.getFeatureInformationSources()

toXML

public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
Overrides:
toXML in class DesignElementMapImpl

toXMLDoc

public org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
Overrides:
toXMLDoc in class DesignElementMapImpl

toXMLProcessor

public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
                                          java.util.ArrayList fillOutValues)
Returns an XML representation of the object. The document is not modified.

Overrides:
toXMLProcessor in class DesignElementMapImpl
Parameters:
doc - the working document
fillOutValues - a list of attribute names that should have full XML for their values.
Returns:
org.w3c.dom.Element an XML representation

getXMLMethodDescriptors

public java.util.Hashtable getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.

Overrides:
getXMLMethodDescriptors in class DesignElementMapImpl
Returns:
Hashtable The Hashtable of descriptors.

toString

public java.lang.String toString()
Returns a String representation of this object suitable for console display.

Overrides:
toString in class DesignElementMapImpl
Returns:
the String representation.