gov.nih.nci.mageom.domain.QuantitationType
Interface QuantitationType

All Superinterfaces:
Describable, Extendable, Identifiable
All Known Subinterfaces:
ConfidenceIndicator, DerivedSignal, Error, ExpectedValue, Failed, MeasuredSignal, PresentAbsent, PValue, Ratio, SpecializedQuantitationType, StandardQuantitationType
All Known Implementing Classes:
ConfidenceIndicatorImpl, DerivedSignalImpl, ErrorImpl, ExpectedValueImpl, FailedImpl, MeasuredSignalImpl, PresentAbsentImpl, PValueImpl, QuantitationTypeImpl, RatioImpl, SpecializedQuantitationTypeImpl, StandardQuantitationTypeImpl

public interface QuantitationType
extends Identifiable

A method for calculating a single datum of the matrix (e.g. raw intensity, background, error).

Version:
%I%, %G%

Method Summary
 Channel getChannel()
          Returns the value of this QuantitationType object's channel attribute.
 ConfidenceIndicator[] getConfidenceIndicators()
          Returns the value of this QuantitationType object's confidenceIndicators attribute.
 OntologyEntry getDataType()
          Returns the value of this QuantitationType object's dataType attribute.
 java.lang.Boolean getIsBackground()
          Returns the value of this QuantitationType object's isBackground attribute.
 QuantitationTypeMap[] getQuantitationTypeMaps()
          Returns the value of this QuantitationType object's quantitationTypeMaps attribute.
 OntologyEntry getScale()
          Returns the value of this QuantitationType object's scale attribute.
 void setChannel(Channel p_channel)
          Sets the channel attribute.
 void setConfidenceIndicators(ConfidenceIndicator[] p_confidenceIndicators)
          Sets the confidenceIndicators attribute.
 void setDataType(OntologyEntry p_dataType)
          Sets the dataType attribute.
 void setIsBackground(java.lang.Boolean p_isBackground)
          Sets the isBackground attribute.
 void setQuantitationTypeMaps(QuantitationTypeMap[] p_quantitationTypeMaps)
          Sets the quantitationTypeMaps attribute.
 void setScale(OntologyEntry p_scale)
          Sets the scale attribute.
 
Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from interface gov.nih.nci.mageom.domain.Describable
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from interface gov.nih.nci.mageom.domain.Extendable
getPropertySets, setPropertySets
 

Method Detail

setIsBackground

void setIsBackground(java.lang.Boolean p_isBackground)
Sets the isBackground attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a QuantitationType object.

Parameters:
p_isBackground - The new value for isBackground.
See Also:
getIsBackground()

getIsBackground

java.lang.Boolean getIsBackground()
Returns the value of this QuantitationType object's isBackground attribute. Description of isBackground: Indicates whether the quantitation has been measured from the background or from the feature itself.

Returns:
boolean The value of isBackground.

setChannel

void setChannel(Channel p_channel)
Sets the channel attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a QuantitationType object.

Parameters:
p_channel - The new value for channel.
See Also:
getChannel()

getChannel

Channel getChannel()
Returns the value of this QuantitationType object's channel attribute.

Returns:
gov.nih.nci.mageom.bean.BioAssay.Channel The value of channel.
See Also:
Channel

setQuantitationTypeMaps

void setQuantitationTypeMaps(QuantitationTypeMap[] p_quantitationTypeMaps)
Sets the quantitationTypeMaps attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a QuantitationType object.

Parameters:
p_quantitationTypeMaps - The new value for quantitationTypeMaps.
See Also:
getQuantitationTypeMaps()

getQuantitationTypeMaps

QuantitationTypeMap[] getQuantitationTypeMaps()
Returns the value of this QuantitationType object's quantitationTypeMaps attribute.

Returns:
gov.nih.nci.mageom.bean.BioAssayData.QuantitationTypeMap[] The value of quantitationTypeMaps.
See Also:
QuantitationTypeMap

setConfidenceIndicators

void setConfidenceIndicators(ConfidenceIndicator[] p_confidenceIndicators)
Sets the confidenceIndicators attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a QuantitationType object.

Parameters:
p_confidenceIndicators - The new value for confidenceIndicators.
See Also:
getConfidenceIndicators()

getConfidenceIndicators

ConfidenceIndicator[] getConfidenceIndicators()
Returns the value of this QuantitationType object's confidenceIndicators attribute.

Returns:
gov.nih.nci.mageom.bean.QuantitationType.ConfidenceIndicator[] The value of confidenceIndicators.
See Also:
ConfidenceIndicator

setDataType

void setDataType(OntologyEntry p_dataType)
Sets the dataType attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a QuantitationType object.

Parameters:
p_dataType - The new value for dataType.
See Also:
getDataType()

getDataType

OntologyEntry getDataType()
Returns the value of this QuantitationType object's dataType attribute.

Returns:
gov.nih.nci.mageom.bean.Description.OntologyEntry The value of dataType.
See Also:
OntologyEntry

setScale

void setScale(OntologyEntry p_scale)
Sets the scale attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a QuantitationType object.

Parameters:
p_scale - The new value for scale.
See Also:
getScale()

getScale

OntologyEntry getScale()
Returns the value of this QuantitationType object's scale attribute.

Returns:
gov.nih.nci.mageom.bean.Description.OntologyEntry The value of scale.
See Also:
OntologyEntry