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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayDataImpl
public class BioAssayDataImpl
Represents the dataset created when the BioAssays are created. BioAssayData is the entry point to the values. Because the actual values are represented by a different object, BioDataValues, which can be memory intensive, the annotation of the transformation can be gotten separate from the data.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected BioAssayDimension |
bioAssayDimension
DOCUMENT ME |
protected java.lang.Long |
bioAssayDimensionId
The internal ID of the associated bioAssayDimension object. |
protected BioDataValues |
bioDataValues
DOCUMENT ME |
protected java.lang.Long |
bioDataValuesId
The internal ID of the associated bioDataValues object. |
protected DesignElementDimension |
designElementDimension
DOCUMENT ME |
protected java.lang.Long |
designElementDimensionId
The internal ID of the associated designElementDimension object. |
protected QuantitationTypeDimension |
quantitationTypeDimension
DOCUMENT ME |
protected java.lang.Long |
quantitationTypeDimensionId
The internal ID of the associated quantitationTypeDimension object. |
protected NameValueType[] |
summaryStatistics
DOCUMENT ME |
protected int |
summaryStatisticsCount
The count of NameValueType objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
BioAssayDataImpl()
Default constructor |
|
| Method Summary | |
|---|---|
BioAssayDimension |
getBioAssayDimension()
Returns the value of this BioAssayData object's bioAssayDimension attribute. |
long |
getBioAssayDimensionId()
|
BioDataValues |
getBioDataValues()
Returns the value of this BioAssayData object's bioDataValues attribute. |
DesignElementDimension |
getDesignElementDimension()
Returns the value of this BioAssayData object's designElementDimension attribute. |
long |
getDesignElementDimensionId()
|
QuantitationTypeDimension |
getQuantitationTypeDimension()
Returns the value of this BioAssayData object's quantitationTypeDimension attribute. |
NameValueType[] |
getSummaryStatistics()
Returns the value of this BioAssayData object's summaryStatistics attribute. |
int |
getSummaryStatisticsCount()
Returns the count of all NameValueType
associated with this BioAssayData object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
BioAssayData[] |
searchBioAssayDatas(BioAssayDataSearchCriteria criteria)
Returns an array of BioAssayData objects that
satisfy the given BioAssayDataSearchCriteria. |
void |
setBioAssayDimension(BioAssayDimension p_bioAssayDimension)
Sets the bioAssayDimension attribute. |
void |
setBioDataValues(BioDataValues p_bioDataValues)
Sets the bioDataValues attribute. |
void |
setDesignElementDimension(DesignElementDimension p_designElementDimension)
Sets the designElementDimension attribute. |
void |
setQuantitationTypeDimension(QuantitationTypeDimension p_quantitationTypeDimension)
Sets the quantitationTypeDimension attribute. |
void |
setSummaryStatistics(NameValueType[] p_summaryStatistics)
Sets the summaryStatistics attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected BioAssayDimension bioAssayDimension
protected java.lang.Long bioAssayDimensionId
protected DesignElementDimension designElementDimension
protected java.lang.Long designElementDimensionId
protected QuantitationTypeDimension quantitationTypeDimension
protected java.lang.Long quantitationTypeDimensionId
protected int summaryStatisticsCount
protected NameValueType[] summaryStatistics
protected BioDataValues bioDataValues
protected java.lang.Long bioDataValuesId
| Constructor Detail |
|---|
public BioAssayDataImpl()
| Method Detail |
|---|
protected void init()
init in class IdentifiableImpl
public BioAssayData[] searchBioAssayDatas(BioAssayDataSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
BioAssayData objects that
satisfy the given BioAssayDataSearchCriteria.
criteria - The BioAssayDataSearchCriteria
which represents a query for BioAssayData objects.
BioAssayData objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setBioAssayDimension(BioAssayDimension p_bioAssayDimension)
BioAssayData object.
setBioAssayDimension in interface BioAssayDatap_bioAssayDimension - The new value for bioAssayDimension.BioAssayData.getBioAssayDimension()public BioAssayDimension getBioAssayDimension()
BioAssayDataBioAssayData object's bioAssayDimension attribute.
getBioAssayDimension in interface BioAssayDatagov.nih.nci.mageom.bean.BioAssayData.BioAssayDimension The value of bioAssayDimension.BioAssayData.getBioAssayDimension()public void setDesignElementDimension(DesignElementDimension p_designElementDimension)
BioAssayData object.
setDesignElementDimension in interface BioAssayDatap_designElementDimension - The new value for designElementDimension.BioAssayData.getDesignElementDimension()public DesignElementDimension getDesignElementDimension()
BioAssayDataBioAssayData object's designElementDimension attribute.
getDesignElementDimension in interface BioAssayDatagov.nih.nci.mageom.bean.BioAssayData.DesignElementDimension The value of designElementDimension.BioAssayData.getDesignElementDimension()public void setQuantitationTypeDimension(QuantitationTypeDimension p_quantitationTypeDimension)
BioAssayData object.
setQuantitationTypeDimension in interface BioAssayDatap_quantitationTypeDimension - The new value for quantitationTypeDimension.BioAssayData.getQuantitationTypeDimension()public QuantitationTypeDimension getQuantitationTypeDimension()
BioAssayDataBioAssayData object's quantitationTypeDimension attribute.
getQuantitationTypeDimension in interface BioAssayDatagov.nih.nci.mageom.bean.BioAssayData.QuantitationTypeDimension The value of quantitationTypeDimension.BioAssayData.getQuantitationTypeDimension()public void setSummaryStatistics(NameValueType[] p_summaryStatistics)
BioAssayData object.
setSummaryStatistics in interface BioAssayDatap_summaryStatistics - The new value for summaryStatistics.BioAssayData.getSummaryStatistics()public NameValueType[] getSummaryStatistics()
BioAssayDataBioAssayData object's summaryStatistics attribute.
getSummaryStatistics in interface BioAssayDatagov.nih.nci.mageom.bean.NameValueType[] The value of summaryStatistics.BioAssayData.getSummaryStatistics()public void setBioDataValues(BioDataValues p_bioDataValues)
BioAssayData object.
setBioDataValues in interface BioAssayDatap_bioDataValues - The new value for bioDataValues.BioAssayData.getBioDataValues()public BioDataValues getBioDataValues()
BioAssayDataBioAssayData object's bioDataValues attribute.
getBioDataValues in interface BioAssayDatagov.nih.nci.mageom.bean.BioAssayData.BioDataValues The value of bioDataValues.BioAssayData.getBioDataValues()public int getSummaryStatisticsCount()
NameValueType
associated with this BioAssayData object.
BioAssayData.getSummaryStatistics()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class IdentifiableImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class IdentifiableImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class IdentifiableImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class IdentifiableImplpublic java.lang.String toString()
toString in class IdentifiableImplpublic long getDesignElementDimensionId()
public long getBioAssayDimensionId()
|
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