Package gov.nih.nci.mageom.domain.DesignElement.impl

Class Summary
CompositeCompositeMapImpl A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence.
CompositePositionImpl The location in the compositeSequence target's sequence to which a source compositeSequence maps.
CompositeSequenceImpl A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
DesignElementImpl An element of an array.
FeatureImpl An intended position on an array.
FeatureInformationImpl As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter.
FeatureLocationImpl Specifies where a feature is located relative to a grid.
FeatureReporterMapImpl A FeatureReporterMap is the description of how source features are transformed into a target reporter.
MismatchInformationImpl Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence.
PositionImpl Specifies a position on an array.
ReporterCompositeMapImpl A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.
ReporterImpl A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
ReporterPositionImpl The location in the composite target's sequence to which a source reporter maps.