gov.nih.nci.mageom.domain.BioAssay.impl
Class MeasuredBioAssayImpl

java.lang.Object
  extended by gov.nih.nci.mageom.domain.impl.MAGEOMObject
      extended by gov.nih.nci.mageom.domain.impl.ExtendableImpl
          extended by gov.nih.nci.mageom.domain.impl.DescribableImpl
              extended by gov.nih.nci.mageom.domain.impl.IdentifiableImpl
                  extended by gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
                      extended by gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
All Implemented Interfaces:
BioAssay, MeasuredBioAssay, Describable, Extendable, Identifiable, java.io.Serializable

public class MeasuredBioAssayImpl
extends BioAssayImpl
implements MeasuredBioAssay

A measured bioAssay is the direct processing of information in a physical bioAssay by the featureExtraction event. Often uses images which are referenced through the physical bioAssay.

Version:
%I%, %G%
See Also:
Serialized Form

Field Summary
protected static java.util.ArrayList allAssociationMethods
           
protected static java.util.Hashtable associationMethods
           
protected  FeatureExtraction featureExtraction
          DOCUMENT ME
protected  java.lang.Long featureExtractionId
          The internal ID of the associated featureExtraction object.
protected  MeasuredBioAssayData[] measuredBioAssayData
          DOCUMENT ME
protected  int measuredBioAssayDataCount
          The count of MeasuredBioAssayData objects.
 
Fields inherited from class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
bioAssayFactorValues, bioAssayFactorValuesCount, channels, channelsCount
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
identifier, name
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
propertySets, propertySetsCount, securedElementId
 
Constructor Summary
MeasuredBioAssayImpl()
          Default constructor
 
Method Summary
 FeatureExtraction getFeatureExtraction()
          Returns the value of this MeasuredBioAssay object's featureExtraction attribute.
 MeasuredBioAssayData[] getMeasuredBioAssayData()
          Returns the value of this MeasuredBioAssay object's measuredBioAssayData attribute.
 int getMeasuredBioAssayDataCount()
          Returns the count of all MeasuredBioAssayData associated with this MeasuredBioAssay object.
 java.util.Hashtable getXMLMethodDescriptors()
          Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
protected  void init()
           
 MeasuredBioAssay[] searchMeasuredBioAssays(MeasuredBioAssaySearchCriteria criteria)
          Returns an array of MeasuredBioAssay objects that satisfy the given MeasuredBioAssaySearchCriteria.
 void setFeatureExtraction(FeatureExtraction p_featureExtraction)
          Sets the featureExtraction attribute.
 void setMeasuredBioAssayData(MeasuredBioAssayData[] p_measuredBioAssayData)
          Sets the measuredBioAssayData attribute.
 java.lang.String toString()
          Returns a String representation of this object suitable for console display.
 org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc, java.util.ArrayList fillOutValues)
          Returns an XML representation of the object.
 
Methods inherited from class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
getBioAssayFactorValues, getBioAssayFactorValuesCount, getChannels, getChannelsCount, searchBioAssays, setBioAssayFactorValues, setChannels
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
getIdentifier, getName, searchIdentifiables, setIdentifier, setName
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject
getId, getIsEditable, setId
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface gov.nih.nci.mageom.domain.BioAssay.BioAssay
getBioAssayFactorValues, getChannels, setBioAssayFactorValues, setChannels
 
Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from interface gov.nih.nci.mageom.domain.Describable
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from interface gov.nih.nci.mageom.domain.Extendable
getPropertySets, setPropertySets
 

Field Detail

allAssociationMethods

protected static java.util.ArrayList allAssociationMethods

associationMethods

protected static java.util.Hashtable associationMethods

featureExtraction

protected FeatureExtraction featureExtraction
DOCUMENT ME


featureExtractionId

protected java.lang.Long featureExtractionId
The internal ID of the associated featureExtraction object.


measuredBioAssayDataCount

protected int measuredBioAssayDataCount
The count of MeasuredBioAssayData objects.


measuredBioAssayData

protected MeasuredBioAssayData[] measuredBioAssayData
DOCUMENT ME

Constructor Detail

MeasuredBioAssayImpl

public MeasuredBioAssayImpl()
Default constructor

Method Detail

init

protected void init()
Overrides:
init in class BioAssayImpl

searchMeasuredBioAssays

public MeasuredBioAssay[] searchMeasuredBioAssays(MeasuredBioAssaySearchCriteria criteria)
                                           throws gov.nih.nci.common.search.SearchException
Returns an array of MeasuredBioAssay objects that satisfy the given MeasuredBioAssaySearchCriteria.

Parameters:
criteria - The MeasuredBioAssaySearchCriteria which represents a query for MeasuredBioAssay objects.
Returns:
An array of MeasuredBioAssay objects.
Throws:
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchException

setFeatureExtraction

public void setFeatureExtraction(FeatureExtraction p_featureExtraction)
Sets the featureExtraction attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a MeasuredBioAssay object.

Specified by:
setFeatureExtraction in interface MeasuredBioAssay
Parameters:
p_featureExtraction - The new value for featureExtraction.
See Also:
MeasuredBioAssay.getFeatureExtraction()

getFeatureExtraction

public FeatureExtraction getFeatureExtraction()
Description copied from interface: MeasuredBioAssay
Returns the value of this MeasuredBioAssay object's featureExtraction attribute.

Specified by:
getFeatureExtraction in interface MeasuredBioAssay
Returns:
gov.nih.nci.mageom.bean.BioAssay.FeatureExtraction The value of featureExtraction.
See Also:
MeasuredBioAssay.getFeatureExtraction()

setMeasuredBioAssayData

public void setMeasuredBioAssayData(MeasuredBioAssayData[] p_measuredBioAssayData)
Sets the measuredBioAssayData attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a MeasuredBioAssay object.

Specified by:
setMeasuredBioAssayData in interface MeasuredBioAssay
Parameters:
p_measuredBioAssayData - The new value for measuredBioAssayData.
See Also:
MeasuredBioAssay.getMeasuredBioAssayData()

getMeasuredBioAssayData

public MeasuredBioAssayData[] getMeasuredBioAssayData()
Description copied from interface: MeasuredBioAssay
Returns the value of this MeasuredBioAssay object's measuredBioAssayData attribute.

Specified by:
getMeasuredBioAssayData in interface MeasuredBioAssay
Returns:
gov.nih.nci.mageom.bean.BioAssayData.MeasuredBioAssayData[] The value of measuredBioAssayData.
See Also:
MeasuredBioAssay.getMeasuredBioAssayData()

getMeasuredBioAssayDataCount

public int getMeasuredBioAssayDataCount()
Returns the count of all MeasuredBioAssayData associated with this MeasuredBioAssay object.

Returns:
the count
See Also:
MeasuredBioAssay.getMeasuredBioAssayData()

toXML

public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
Overrides:
toXML in class BioAssayImpl

toXMLDoc

public org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
Overrides:
toXMLDoc in class BioAssayImpl

toXMLProcessor

public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
                                          java.util.ArrayList fillOutValues)
Returns an XML representation of the object. The document is not modified.

Overrides:
toXMLProcessor in class BioAssayImpl
Parameters:
doc - the working document
fillOutValues - a list of attribute names that should have full XML for their values.
Returns:
org.w3c.dom.Element an XML representation

getXMLMethodDescriptors

public java.util.Hashtable getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.

Overrides:
getXMLMethodDescriptors in class BioAssayImpl
Returns:
Hashtable The Hashtable of descriptors.

toString

public java.lang.String toString()
Returns a String representation of this object suitable for console display.

Overrides:
toString in class BioAssayImpl
Returns:
the String representation.