gov.nih.nci.mageom.domain.ArrayDesign.impl
Class PhysicalArrayDesignImpl

java.lang.Object
  extended by gov.nih.nci.mageom.domain.impl.MAGEOMObject
      extended by gov.nih.nci.mageom.domain.impl.ExtendableImpl
          extended by gov.nih.nci.mageom.domain.impl.DescribableImpl
              extended by gov.nih.nci.mageom.domain.impl.IdentifiableImpl
                  extended by gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
                      extended by gov.nih.nci.mageom.domain.ArrayDesign.impl.PhysicalArrayDesignImpl
All Implemented Interfaces:
ArrayDesign, PhysicalArrayDesign, Describable, Extendable, Identifiable, java.io.Serializable

public class PhysicalArrayDesignImpl
extends ArrayDesignImpl
implements PhysicalArrayDesign

A design that is expected to be used to manufacture physical arrays.

Version:
%I%, %G%
See Also:
Serialized Form

Field Summary
protected static java.util.ArrayList allAssociationMethods
           
protected static java.util.Hashtable associationMethods
           
protected  OntologyEntry surfaceType
          DOCUMENT ME
protected  java.lang.Long surfaceTypeId
          The internal ID of the associated surfaceType object.
protected  ZoneGroup[] zoneGroups
          DOCUMENT ME
protected  int zoneGroupsCount
          The count of ZoneGroup objects.
 
Fields inherited from class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
compositeGroups, compositeGroupsCount, designProviders, designProvidersCount, featureGroups, featureGroupsCount, numberOfFeatures, protocolApplications, protocolApplicationsCount, reporterGroups, reporterGroupsCount, version
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
identifier, name
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
propertySets, propertySetsCount, securedElementId
 
Constructor Summary
PhysicalArrayDesignImpl()
          Default constructor
 
Method Summary
 OntologyEntry getSurfaceType()
          Returns the value of this PhysicalArrayDesign object's surfaceType attribute.
 java.util.Hashtable getXMLMethodDescriptors()
          Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
 ZoneGroup[] getZoneGroups()
          Returns the value of this PhysicalArrayDesign object's zoneGroups attribute.
 int getZoneGroupsCount()
          Returns the count of all ZoneGroup associated with this PhysicalArrayDesign object.
protected  void init()
           
 PhysicalArrayDesign[] searchPhysicalArrayDesigns(PhysicalArrayDesignSearchCriteria criteria)
          Returns an array of PhysicalArrayDesign objects that satisfy the given PhysicalArrayDesignSearchCriteria.
 void setSurfaceType(OntologyEntry p_surfaceType)
          Sets the surfaceType attribute.
 void setZoneGroups(ZoneGroup[] p_zoneGroups)
          Sets the zoneGroups attribute.
 java.lang.String toString()
          Returns a String representation of this object suitable for console display.
 org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc, java.util.ArrayList fillOutValues)
          Returns an XML representation of the object.
 
Methods inherited from class gov.nih.nci.mageom.domain.ArrayDesign.impl.ArrayDesignImpl
getCompositeGroups, getCompositeGroupsCount, getDesignProviders, getDesignProvidersCount, getFeatureGroups, getFeatureGroupsCount, getNumberOfFeatures, getProtocolApplications, getProtocolApplicationsCount, getReporterGroups, getReporterGroupsCount, getVersion, searchArrayDesigns, setCompositeGroups, setDesignProviders, setFeatureGroups, setNumberOfFeatures, setProtocolApplications, setReporterGroups, setVersion
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
getIdentifier, getName, searchIdentifiables, setIdentifier, setName
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject
getId, getIsEditable, setId
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface gov.nih.nci.mageom.domain.ArrayDesign.ArrayDesign
getCompositeGroups, getDesignProviders, getFeatureGroups, getNumberOfFeatures, getProtocolApplications, getReporterGroups, getVersion, setCompositeGroups, setDesignProviders, setFeatureGroups, setNumberOfFeatures, setProtocolApplications, setReporterGroups, setVersion
 
Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from interface gov.nih.nci.mageom.domain.Describable
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from interface gov.nih.nci.mageom.domain.Extendable
getPropertySets, setPropertySets
 

Field Detail

allAssociationMethods

protected static java.util.ArrayList allAssociationMethods

associationMethods

protected static java.util.Hashtable associationMethods

zoneGroupsCount

protected int zoneGroupsCount
The count of ZoneGroup objects.


zoneGroups

protected ZoneGroup[] zoneGroups
DOCUMENT ME


surfaceType

protected OntologyEntry surfaceType
DOCUMENT ME


surfaceTypeId

protected java.lang.Long surfaceTypeId
The internal ID of the associated surfaceType object.

Constructor Detail

PhysicalArrayDesignImpl

public PhysicalArrayDesignImpl()
Default constructor

Method Detail

init

protected void init()
Overrides:
init in class ArrayDesignImpl

searchPhysicalArrayDesigns

public PhysicalArrayDesign[] searchPhysicalArrayDesigns(PhysicalArrayDesignSearchCriteria criteria)
                                                 throws gov.nih.nci.common.search.SearchException
Returns an array of PhysicalArrayDesign objects that satisfy the given PhysicalArrayDesignSearchCriteria.

Parameters:
criteria - The PhysicalArrayDesignSearchCriteria which represents a query for PhysicalArrayDesign objects.
Returns:
An array of PhysicalArrayDesign objects.
Throws:
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchException

setZoneGroups

public void setZoneGroups(ZoneGroup[] p_zoneGroups)
Sets the zoneGroups attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a PhysicalArrayDesign object.

Specified by:
setZoneGroups in interface PhysicalArrayDesign
Parameters:
p_zoneGroups - The new value for zoneGroups.
See Also:
PhysicalArrayDesign.getZoneGroups()

getZoneGroups

public ZoneGroup[] getZoneGroups()
Description copied from interface: PhysicalArrayDesign
Returns the value of this PhysicalArrayDesign object's zoneGroups attribute.

Specified by:
getZoneGroups in interface PhysicalArrayDesign
Returns:
gov.nih.nci.mageom.bean.ArrayDesign.ZoneGroup[] The value of zoneGroups.
See Also:
PhysicalArrayDesign.getZoneGroups()

setSurfaceType

public void setSurfaceType(OntologyEntry p_surfaceType)
Sets the surfaceType attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a PhysicalArrayDesign object.

Specified by:
setSurfaceType in interface PhysicalArrayDesign
Parameters:
p_surfaceType - The new value for surfaceType.
See Also:
PhysicalArrayDesign.getSurfaceType()

getSurfaceType

public OntologyEntry getSurfaceType()
Description copied from interface: PhysicalArrayDesign
Returns the value of this PhysicalArrayDesign object's surfaceType attribute.

Specified by:
getSurfaceType in interface PhysicalArrayDesign
Returns:
gov.nih.nci.mageom.bean.Description.OntologyEntry The value of surfaceType.
See Also:
PhysicalArrayDesign.getSurfaceType()

getZoneGroupsCount

public int getZoneGroupsCount()
Returns the count of all ZoneGroup associated with this PhysicalArrayDesign object.

Returns:
the count
See Also:
PhysicalArrayDesign.getZoneGroups()

toXML

public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
Overrides:
toXML in class ArrayDesignImpl

toXMLDoc

public org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
Overrides:
toXMLDoc in class ArrayDesignImpl

toXMLProcessor

public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
                                          java.util.ArrayList fillOutValues)
Returns an XML representation of the object. The document is not modified.

Overrides:
toXMLProcessor in class ArrayDesignImpl
Parameters:
doc - the working document
fillOutValues - a list of attribute names that should have full XML for their values.
Returns:
org.w3c.dom.Element an XML representation

getXMLMethodDescriptors

public java.util.Hashtable getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.

Overrides:
getXMLMethodDescriptors in class ArrayDesignImpl
Returns:
Hashtable The Hashtable of descriptors.

toString

public java.lang.String toString()
Returns a String representation of this object suitable for console display.

Overrides:
toString in class ArrayDesignImpl
Returns:
the String representation.