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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl
gov.nih.nci.mageom.domain.BioAssay.impl.MeasuredBioAssayImpl
public class MeasuredBioAssayImpl
A measured bioAssay is the direct processing of information in a physical bioAssay by the featureExtraction event. Often uses images which are referenced through the physical bioAssay.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected FeatureExtraction |
featureExtraction
DOCUMENT ME |
protected java.lang.Long |
featureExtractionId
The internal ID of the associated featureExtraction object. |
protected MeasuredBioAssayData[] |
measuredBioAssayData
DOCUMENT ME |
protected int |
measuredBioAssayDataCount
The count of MeasuredBioAssayData objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl |
|---|
bioAssayFactorValues, bioAssayFactorValuesCount, channels, channelsCount |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
MeasuredBioAssayImpl()
Default constructor |
|
| Method Summary | |
|---|---|
FeatureExtraction |
getFeatureExtraction()
Returns the value of this MeasuredBioAssay object's featureExtraction attribute. |
MeasuredBioAssayData[] |
getMeasuredBioAssayData()
Returns the value of this MeasuredBioAssay object's measuredBioAssayData attribute. |
int |
getMeasuredBioAssayDataCount()
Returns the count of all MeasuredBioAssayData
associated with this MeasuredBioAssay object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
MeasuredBioAssay[] |
searchMeasuredBioAssays(MeasuredBioAssaySearchCriteria criteria)
Returns an array of MeasuredBioAssay objects that
satisfy the given MeasuredBioAssaySearchCriteria. |
void |
setFeatureExtraction(FeatureExtraction p_featureExtraction)
Sets the featureExtraction attribute. |
void |
setMeasuredBioAssayData(MeasuredBioAssayData[] p_measuredBioAssayData)
Sets the measuredBioAssayData attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayImpl |
|---|
getBioAssayFactorValues, getBioAssayFactorValuesCount, getChannels, getChannelsCount, searchBioAssays, setBioAssayFactorValues, setChannels |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.BioAssay.BioAssay |
|---|
getBioAssayFactorValues, getChannels, setBioAssayFactorValues, setChannels |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected FeatureExtraction featureExtraction
protected java.lang.Long featureExtractionId
protected int measuredBioAssayDataCount
protected MeasuredBioAssayData[] measuredBioAssayData
| Constructor Detail |
|---|
public MeasuredBioAssayImpl()
| Method Detail |
|---|
protected void init()
init in class BioAssayImpl
public MeasuredBioAssay[] searchMeasuredBioAssays(MeasuredBioAssaySearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
MeasuredBioAssay objects that
satisfy the given MeasuredBioAssaySearchCriteria.
criteria - The MeasuredBioAssaySearchCriteria
which represents a query for MeasuredBioAssay objects.
MeasuredBioAssay objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setFeatureExtraction(FeatureExtraction p_featureExtraction)
MeasuredBioAssay object.
setFeatureExtraction in interface MeasuredBioAssayp_featureExtraction - The new value for featureExtraction.MeasuredBioAssay.getFeatureExtraction()public FeatureExtraction getFeatureExtraction()
MeasuredBioAssayMeasuredBioAssay object's featureExtraction attribute.
getFeatureExtraction in interface MeasuredBioAssaygov.nih.nci.mageom.bean.BioAssay.FeatureExtraction The value of featureExtraction.MeasuredBioAssay.getFeatureExtraction()public void setMeasuredBioAssayData(MeasuredBioAssayData[] p_measuredBioAssayData)
MeasuredBioAssay object.
setMeasuredBioAssayData in interface MeasuredBioAssayp_measuredBioAssayData - The new value for measuredBioAssayData.MeasuredBioAssay.getMeasuredBioAssayData()public MeasuredBioAssayData[] getMeasuredBioAssayData()
MeasuredBioAssayMeasuredBioAssay object's measuredBioAssayData attribute.
getMeasuredBioAssayData in interface MeasuredBioAssaygov.nih.nci.mageom.bean.BioAssayData.MeasuredBioAssayData[] The value of measuredBioAssayData.MeasuredBioAssay.getMeasuredBioAssayData()public int getMeasuredBioAssayDataCount()
MeasuredBioAssayData
associated with this MeasuredBioAssay object.
MeasuredBioAssay.getMeasuredBioAssayData()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class BioAssayImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class BioAssayImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class BioAssayImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class BioAssayImplpublic java.lang.String toString()
toString in class BioAssayImpl
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