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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl
gov.nih.nci.mageom.domain.BioAssayData.impl.BioAssayMapImpl
public class BioAssayMapImpl
The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected DerivedBioAssay |
bioAssayMapTarget
DOCUMENT ME |
protected java.lang.Long |
bioAssayMapTargetId
The internal ID of the associated bioAssayMapTarget object. |
protected BioAssay[] |
sourceBioAssays
DOCUMENT ME |
protected int |
sourceBioAssaysCount
The count of BioAssay objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl |
|---|
protocolApplications, protocolApplicationsCount |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
BioAssayMapImpl()
Default constructor |
|
| Method Summary | |
|---|---|
DerivedBioAssay |
getBioAssayMapTarget()
Returns the value of this BioAssayMap object's bioAssayMapTarget attribute. |
BioAssay[] |
getSourceBioAssays()
Returns the value of this BioAssayMap object's sourceBioAssays attribute. |
int |
getSourceBioAssaysCount()
Returns the count of all BioAssay
associated with this BioAssayMap object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
BioAssayMap[] |
searchBioAssayMaps(BioAssayMapSearchCriteria criteria)
Returns an array of BioAssayMap objects that
satisfy the given BioAssayMapSearchCriteria. |
void |
setBioAssayMapTarget(DerivedBioAssay p_bioAssayMapTarget)
Sets the bioAssayMapTarget attribute. |
void |
setSourceBioAssays(BioAssay[] p_sourceBioAssays)
Sets the sourceBioAssays attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.MapImpl |
|---|
searchMaps |
| Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl |
|---|
getProtocolApplications, getProtocolApplicationsCount, searchBioEvents, setProtocolApplications |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.BioEvent.BioEvent |
|---|
getProtocolApplications, setProtocolApplications |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected DerivedBioAssay bioAssayMapTarget
protected java.lang.Long bioAssayMapTargetId
protected int sourceBioAssaysCount
protected BioAssay[] sourceBioAssays
| Constructor Detail |
|---|
public BioAssayMapImpl()
| Method Detail |
|---|
protected void init()
init in class MapImpl
public BioAssayMap[] searchBioAssayMaps(BioAssayMapSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
BioAssayMap objects that
satisfy the given BioAssayMapSearchCriteria.
criteria - The BioAssayMapSearchCriteria
which represents a query for BioAssayMap objects.
BioAssayMap objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setBioAssayMapTarget(DerivedBioAssay p_bioAssayMapTarget)
BioAssayMap object.
setBioAssayMapTarget in interface BioAssayMapp_bioAssayMapTarget - The new value for bioAssayMapTarget.BioAssayMap.getBioAssayMapTarget()public DerivedBioAssay getBioAssayMapTarget()
BioAssayMapBioAssayMap object's bioAssayMapTarget attribute.
getBioAssayMapTarget in interface BioAssayMapgov.nih.nci.mageom.bean.BioAssay.DerivedBioAssay The value of bioAssayMapTarget.BioAssayMap.getBioAssayMapTarget()public void setSourceBioAssays(BioAssay[] p_sourceBioAssays)
BioAssayMap object.
setSourceBioAssays in interface BioAssayMapp_sourceBioAssays - The new value for sourceBioAssays.BioAssayMap.getSourceBioAssays()public BioAssay[] getSourceBioAssays()
BioAssayMapBioAssayMap object's sourceBioAssays attribute.
getSourceBioAssays in interface BioAssayMapgov.nih.nci.mageom.bean.BioAssay.BioAssay[] The value of sourceBioAssays.BioAssayMap.getSourceBioAssays()public int getSourceBioAssaysCount()
BioAssay
associated with this BioAssayMap object.
BioAssayMap.getSourceBioAssays()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class MapImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class MapImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class MapImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class MapImplpublic java.lang.String toString()
toString in class MapImpl
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