gov.nih.nci.mageom.domain.QuantitationType.impl
Class DerivedSignalImpl

java.lang.Object
  extended by gov.nih.nci.mageom.domain.impl.MAGEOMObject
      extended by gov.nih.nci.mageom.domain.impl.ExtendableImpl
          extended by gov.nih.nci.mageom.domain.impl.DescribableImpl
              extended by gov.nih.nci.mageom.domain.impl.IdentifiableImpl
                  extended by gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
                      extended by gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
                          extended by gov.nih.nci.mageom.domain.QuantitationType.impl.DerivedSignalImpl
All Implemented Interfaces:
Describable, Extendable, Identifiable, DerivedSignal, QuantitationType, StandardQuantitationType, java.io.Serializable

public class DerivedSignalImpl
extends StandardQuantitationTypeImpl
implements DerivedSignal

A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements. Of type float.

Version:
%I%, %G%
See Also:
Serialized Form

Field Summary
protected static java.util.ArrayList allAssociationMethods
           
protected static java.util.Hashtable associationMethods
           
 
Fields inherited from class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
channel, channelId, confidenceIndicators, confidenceIndicatorsCount, dataType, dataTypeId, isBackground, quantitationTypeMaps, quantitationTypeMapsCount, scale, scaleId
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
identifier, name
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
propertySets, propertySetsCount, securedElementId
 
Constructor Summary
DerivedSignalImpl()
          Default constructor
 
Method Summary
 java.util.Hashtable getXMLMethodDescriptors()
          Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
protected  void init()
           
 DerivedSignal[] searchDerivedSignals(DerivedSignalSearchCriteria criteria)
          Returns an array of DerivedSignal objects that satisfy the given DerivedSignalSearchCriteria.
 java.lang.String toString()
          Returns a String representation of this object suitable for console display.
 org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc, java.util.ArrayList fillOutValues)
          Returns an XML representation of the object.
 
Methods inherited from class gov.nih.nci.mageom.domain.QuantitationType.impl.StandardQuantitationTypeImpl
searchStandardQuantitationTypes
 
Methods inherited from class gov.nih.nci.mageom.domain.QuantitationType.impl.QuantitationTypeImpl
getChannel, getChannelId, getConfidenceIndicators, getConfidenceIndicatorsCount, getDataType, getDataTypeId, getIsBackground, getQuantitationTypeMaps, getQuantitationTypeMapsCount, getScale, getScaleId, searchQuantitationTypes, setChannel, setChannelId, setConfidenceIndicators, setDataType, setDataTypeId, setIsBackground, setQuantitationTypeMaps, setScale, setScaleId
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
getIdentifier, getName, searchIdentifiables, setIdentifier, setName
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject
getId, getIsEditable, setId
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface gov.nih.nci.mageom.domain.QuantitationType.QuantitationType
getChannel, getConfidenceIndicators, getDataType, getIsBackground, getQuantitationTypeMaps, getScale, setChannel, setConfidenceIndicators, setDataType, setIsBackground, setQuantitationTypeMaps, setScale
 
Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from interface gov.nih.nci.mageom.domain.Describable
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from interface gov.nih.nci.mageom.domain.Extendable
getPropertySets, setPropertySets
 

Field Detail

allAssociationMethods

protected static java.util.ArrayList allAssociationMethods

associationMethods

protected static java.util.Hashtable associationMethods
Constructor Detail

DerivedSignalImpl

public DerivedSignalImpl()
Default constructor

Method Detail

init

protected void init()
Overrides:
init in class StandardQuantitationTypeImpl

searchDerivedSignals

public DerivedSignal[] searchDerivedSignals(DerivedSignalSearchCriteria criteria)
                                     throws gov.nih.nci.common.search.SearchException
Returns an array of DerivedSignal objects that satisfy the given DerivedSignalSearchCriteria.

Parameters:
criteria - The DerivedSignalSearchCriteria which represents a query for DerivedSignal objects.
Returns:
An array of DerivedSignal objects.
Throws:
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchException

toXML

public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
Overrides:
toXML in class StandardQuantitationTypeImpl

toXMLDoc

public org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
Overrides:
toXMLDoc in class StandardQuantitationTypeImpl

toXMLProcessor

public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
                                          java.util.ArrayList fillOutValues)
Returns an XML representation of the object. The document is not modified.

Overrides:
toXMLProcessor in class StandardQuantitationTypeImpl
Parameters:
doc - the working document
fillOutValues - a list of attribute names that should have full XML for their values.
Returns:
org.w3c.dom.Element an XML representation

getXMLMethodDescriptors

public java.util.Hashtable getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.

Overrides:
getXMLMethodDescriptors in class StandardQuantitationTypeImpl
Returns:
Hashtable The Hashtable of descriptors.

toString

public java.lang.String toString()
Returns a String representation of this object suitable for console display.

Overrides:
toString in class StandardQuantitationTypeImpl
Returns:
the String representation.