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public interface Reporter
A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences. The derived data from the measured data of its Features represents the presence or absence of the biosequence or biosequences it is reporting on in the BioAssay. Reporters are Identifiable and several Features on the same array can be mapped to the same reporter as can Features from a different ArrayDesign. The granularity of the Reporters independence is dependent on the technology and the intent of the ArrayDesign. Oligos using mature technologies can in general be assumed to be safely replicated on many features where as with PCR Products there might be the desire for quality assurence to make reporters one to one with features and use the mappings to CompositeSequences for replication purposes.
| Method Summary | |
|---|---|
OntologyEntry[] |
getFailTypes()
Returns the value of this Reporter object's failTypes attribute. |
FeatureReporterMap[] |
getFeatureReporterMaps()
Returns the value of this Reporter object's featureReporterMaps attribute. |
BioSequence[] |
getImmobilizedCharacteristics()
Returns the value of this Reporter object's immobilizedCharacteristics attribute. |
OntologyEntry |
getWarningType()
Returns the value of this Reporter object's warningType attribute. |
void |
setFailTypes(OntologyEntry[] p_failTypes)
Sets the failTypes attribute. |
void |
setFeatureReporterMaps(FeatureReporterMap[] p_featureReporterMaps)
Sets the featureReporterMaps attribute. |
void |
setImmobilizedCharacteristics(BioSequence[] p_immobilizedCharacteristics)
Sets the immobilizedCharacteristics attribute. |
void |
setWarningType(OntologyEntry p_warningType)
Sets the warningType attribute. |
| Methods inherited from interface gov.nih.nci.mageom.domain.DesignElement.DesignElement |
|---|
getControlType, setControlType |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Method Detail |
|---|
void setFailTypes(OntologyEntry[] p_failTypes)
Reporter object.
p_failTypes - The new value for failTypes.getFailTypes()OntologyEntry[] getFailTypes()
Reporter object's failTypes attribute.
gov.nih.nci.mageom.bean.Description.OntologyEntry[] The value of failTypes.OntologyEntryvoid setWarningType(OntologyEntry p_warningType)
Reporter object.
p_warningType - The new value for warningType.getWarningType()OntologyEntry getWarningType()
Reporter object's warningType attribute.
gov.nih.nci.mageom.bean.Description.OntologyEntry The value of warningType.OntologyEntryvoid setImmobilizedCharacteristics(BioSequence[] p_immobilizedCharacteristics)
Reporter object.
p_immobilizedCharacteristics - The new value for immobilizedCharacteristics.getImmobilizedCharacteristics()BioSequence[] getImmobilizedCharacteristics()
Reporter object's immobilizedCharacteristics attribute.
gov.nih.nci.mageom.bean.BioSequence.BioSequence[] The value of immobilizedCharacteristics.BioSequencevoid setFeatureReporterMaps(FeatureReporterMap[] p_featureReporterMaps)
Reporter object.
p_featureReporterMaps - The new value for featureReporterMaps.getFeatureReporterMaps()FeatureReporterMap[] getFeatureReporterMaps()
Reporter object's featureReporterMaps attribute.
gov.nih.nci.mageom.bean.DesignElement.FeatureReporterMap[] The value of featureReporterMaps.FeatureReporterMap
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