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java.lang.Objectgov.nih.nci.mageom.domain.impl.MAGEOMObject
gov.nih.nci.mageom.domain.impl.ExtendableImpl
gov.nih.nci.mageom.domain.impl.DescribableImpl
gov.nih.nci.mageom.domain.impl.IdentifiableImpl
gov.nih.nci.mageom.domain.HigherLevelAnalysis.impl.BioAssayDataClusterImpl
public class BioAssayDataClusterImpl
A mathematical method of higher level analysis whereby BioAssayData are grouped together into nodes.
| Field Summary | |
|---|---|
protected static java.util.ArrayList |
allAssociationMethods
|
protected static java.util.Hashtable |
associationMethods
|
protected BioAssayData |
clusterBioAssayData
DOCUMENT ME |
protected java.lang.Long |
clusterBioAssayDataId
The internal ID of the associated clusterBioAssayData object. |
protected Node[] |
nodes
DOCUMENT ME |
protected int |
nodesCount
The count of Node objects. |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
identifier, name |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId |
| Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
propertySets, propertySetsCount, securedElementId |
| Constructor Summary | |
|---|---|
BioAssayDataClusterImpl()
Default constructor |
|
| Method Summary | |
|---|---|
BioAssayData |
getClusterBioAssayData()
Returns the value of this BioAssayDataCluster object's clusterBioAssayData attribute. |
Node[] |
getNodes()
Returns the value of this BioAssayDataCluster object's nodes attribute. |
int |
getNodesCount()
Returns the count of all Node
associated with this BioAssayDataCluster object. |
java.util.Hashtable |
getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of
the association methods of this object. |
protected void |
init()
|
BioAssayDataCluster[] |
searchBioAssayDataClusters(BioAssayDataClusterSearchCriteria criteria)
Returns an array of BioAssayDataCluster objects that
satisfy the given BioAssayDataClusterSearchCriteria. |
void |
setClusterBioAssayData(BioAssayData p_clusterBioAssayData)
Sets the clusterBioAssayData attribute. |
void |
setNodes(Node[] p_nodes)
Sets the nodes attribute. |
java.lang.String |
toString()
Returns a String representation of this object suitable for console display. |
org.w3c.dom.Element |
toXML(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLDoc(org.w3c.dom.Document doc)
|
org.w3c.dom.Element |
toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
Returns an XML representation of the object. |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl |
|---|
getIdentifier, getName, searchIdentifiables, setIdentifier, setName |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl |
|---|
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl |
|---|
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId |
| Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject |
|---|
getId, getIsEditable, setId |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable |
|---|
getIdentifier, getName, setIdentifier, setName |
| Methods inherited from interface gov.nih.nci.mageom.domain.Describable |
|---|
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity |
| Methods inherited from interface gov.nih.nci.mageom.domain.Extendable |
|---|
getPropertySets, setPropertySets |
| Field Detail |
|---|
protected static java.util.ArrayList allAssociationMethods
protected static java.util.Hashtable associationMethods
protected int nodesCount
protected Node[] nodes
protected BioAssayData clusterBioAssayData
protected java.lang.Long clusterBioAssayDataId
| Constructor Detail |
|---|
public BioAssayDataClusterImpl()
| Method Detail |
|---|
protected void init()
init in class IdentifiableImpl
public BioAssayDataCluster[] searchBioAssayDataClusters(BioAssayDataClusterSearchCriteria criteria)
throws gov.nih.nci.common.search.SearchException
BioAssayDataCluster objects that
satisfy the given BioAssayDataClusterSearchCriteria.
criteria - The BioAssayDataClusterSearchCriteria
which represents a query for BioAssayDataCluster objects.
BioAssayDataCluster objects.
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchExceptionpublic void setNodes(Node[] p_nodes)
BioAssayDataCluster object.
setNodes in interface BioAssayDataClusterp_nodes - The new value for nodes.BioAssayDataCluster.getNodes()public Node[] getNodes()
BioAssayDataClusterBioAssayDataCluster object's nodes attribute.
getNodes in interface BioAssayDataClustergov.nih.nci.mageom.bean.HigherLevelAnalysis.Node[] The value of nodes.BioAssayDataCluster.getNodes()public void setClusterBioAssayData(BioAssayData p_clusterBioAssayData)
BioAssayDataCluster object.
setClusterBioAssayData in interface BioAssayDataClusterp_clusterBioAssayData - The new value for clusterBioAssayData.BioAssayDataCluster.getClusterBioAssayData()public BioAssayData getClusterBioAssayData()
BioAssayDataClusterBioAssayDataCluster object's clusterBioAssayData attribute.
getClusterBioAssayData in interface BioAssayDataClustergov.nih.nci.mageom.bean.BioAssayData.BioAssayData The value of clusterBioAssayData.BioAssayDataCluster.getClusterBioAssayData()public int getNodesCount()
Node
associated with this BioAssayDataCluster object.
BioAssayDataCluster.getNodes()public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
toXML in class IdentifiableImplpublic org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
toXMLDoc in class IdentifiableImpl
public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
java.util.ArrayList fillOutValues)
toXMLProcessor in class IdentifiableImpldoc - the working documentfillOutValues - a list of attribute names that should have
full XML for their values.
public java.util.Hashtable getXMLMethodDescriptors()
XMLMethodDescriptors descriptors of
the association methods of this object.
getXMLMethodDescriptors in class IdentifiableImplpublic java.lang.String toString()
toString in class IdentifiableImpl
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