gov.nih.nci.mageom.domain.BioAssay.impl
Class BioAssayTreatmentImpl

java.lang.Object
  extended by gov.nih.nci.mageom.domain.impl.MAGEOMObject
      extended by gov.nih.nci.mageom.domain.impl.ExtendableImpl
          extended by gov.nih.nci.mageom.domain.impl.DescribableImpl
              extended by gov.nih.nci.mageom.domain.impl.IdentifiableImpl
                  extended by gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
                      extended by gov.nih.nci.mageom.domain.BioAssay.impl.BioAssayTreatmentImpl
All Implemented Interfaces:
BioAssayTreatment, BioEvent, Describable, Extendable, Identifiable, java.io.Serializable
Direct Known Subclasses:
ImageAcquisitionImpl

public class BioAssayTreatmentImpl
extends BioEventImpl
implements BioAssayTreatment

The event which records the process by which PhysicalBioAssays are processed (typically washing, blocking, etc...).

Version:
%I%, %G%
See Also:
Serialized Form

Field Summary
protected static java.util.ArrayList allAssociationMethods
           
protected static java.util.Hashtable associationMethods
           
protected  PhysicalBioAssay physicalBioAssay
          DOCUMENT ME
protected  java.lang.Long physicalBioAssayId
          The internal ID of the associated physicalBioAssay object.
protected  PhysicalBioAssay target
          DOCUMENT ME
protected  java.lang.Long targetId
          The internal ID of the associated target object.
 
Fields inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
protocolApplications, protocolApplicationsCount
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
identifier, name
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
auditTrail, auditTrailCount, descriptions, descriptionsCount, security, securityId
 
Fields inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
propertySets, propertySetsCount, securedElementId
 
Constructor Summary
BioAssayTreatmentImpl()
          Default constructor
 
Method Summary
 PhysicalBioAssay getPhysicalBioAssay()
          Returns the value of this BioAssayTreatment object's physicalBioAssay attribute.
 PhysicalBioAssay getTarget()
          Returns the value of this BioAssayTreatment object's target attribute.
 java.util.Hashtable getXMLMethodDescriptors()
          Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.
protected  void init()
           
 BioAssayTreatment[] searchBioAssayTreatments(BioAssayTreatmentSearchCriteria criteria)
          Returns an array of BioAssayTreatment objects that satisfy the given BioAssayTreatmentSearchCriteria.
 void setPhysicalBioAssay(PhysicalBioAssay p_physicalBioAssay)
          Sets the physicalBioAssay attribute.
 void setTarget(PhysicalBioAssay p_target)
          Sets the target attribute.
 java.lang.String toString()
          Returns a String representation of this object suitable for console display.
 org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
           
 org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc, java.util.ArrayList fillOutValues)
          Returns an XML representation of the object.
 
Methods inherited from class gov.nih.nci.mageom.domain.BioEvent.impl.BioEventImpl
getProtocolApplications, getProtocolApplicationsCount, searchBioEvents, setProtocolApplications
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.IdentifiableImpl
getIdentifier, getName, searchIdentifiables, setIdentifier, setName
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.DescribableImpl
getAuditTrail, getAuditTrailCount, getDescriptions, getDescriptionsCount, getSecurity, searchDescribables, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.ExtendableImpl
getPropertySets, getPropertySetsCount, getSecuredElementId, searchExtendables, setPropertySets, setSecuredElementId
 
Methods inherited from class gov.nih.nci.mageom.domain.impl.MAGEOMObject
getId, getIsEditable, setId
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface gov.nih.nci.mageom.domain.BioEvent.BioEvent
getProtocolApplications, setProtocolApplications
 
Methods inherited from interface gov.nih.nci.mageom.domain.Identifiable
getIdentifier, getName, setIdentifier, setName
 
Methods inherited from interface gov.nih.nci.mageom.domain.Describable
getAuditTrail, getDescriptions, getSecurity, setAuditTrail, setDescriptions, setSecurity
 
Methods inherited from interface gov.nih.nci.mageom.domain.Extendable
getPropertySets, setPropertySets
 

Field Detail

allAssociationMethods

protected static java.util.ArrayList allAssociationMethods

associationMethods

protected static java.util.Hashtable associationMethods

physicalBioAssay

protected PhysicalBioAssay physicalBioAssay
DOCUMENT ME


physicalBioAssayId

protected java.lang.Long physicalBioAssayId
The internal ID of the associated physicalBioAssay object.


target

protected PhysicalBioAssay target
DOCUMENT ME


targetId

protected java.lang.Long targetId
The internal ID of the associated target object.

Constructor Detail

BioAssayTreatmentImpl

public BioAssayTreatmentImpl()
Default constructor

Method Detail

init

protected void init()
Overrides:
init in class BioEventImpl

searchBioAssayTreatments

public BioAssayTreatment[] searchBioAssayTreatments(BioAssayTreatmentSearchCriteria criteria)
                                             throws gov.nih.nci.common.search.SearchException
Returns an array of BioAssayTreatment objects that satisfy the given BioAssayTreatmentSearchCriteria.

Parameters:
criteria - The BioAssayTreatmentSearchCriteria which represents a query for BioAssayTreatment objects.
Returns:
An array of BioAssayTreatment objects.
Throws:
A - gov.nih.nci.common.search.SearchException if there is a problem searching.
gov.nih.nci.common.search.SearchException

setPhysicalBioAssay

public void setPhysicalBioAssay(PhysicalBioAssay p_physicalBioAssay)
Sets the physicalBioAssay attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a BioAssayTreatment object.

Specified by:
setPhysicalBioAssay in interface BioAssayTreatment
Parameters:
p_physicalBioAssay - The new value for physicalBioAssay.
See Also:
BioAssayTreatment.getPhysicalBioAssay()

getPhysicalBioAssay

public PhysicalBioAssay getPhysicalBioAssay()
Description copied from interface: BioAssayTreatment
Returns the value of this BioAssayTreatment object's physicalBioAssay attribute.

Specified by:
getPhysicalBioAssay in interface BioAssayTreatment
Returns:
gov.nih.nci.mageom.bean.BioAssay.PhysicalBioAssay The value of physicalBioAssay.
See Also:
BioAssayTreatment.getPhysicalBioAssay()

setTarget

public void setTarget(PhysicalBioAssay p_target)
Sets the target attribute. This API is currently read-only. So, calling this method does not affect the persistent state of a BioAssayTreatment object.

Specified by:
setTarget in interface BioAssayTreatment
Parameters:
p_target - The new value for target.
See Also:
BioAssayTreatment.getTarget()

getTarget

public PhysicalBioAssay getTarget()
Description copied from interface: BioAssayTreatment
Returns the value of this BioAssayTreatment object's target attribute.

Specified by:
getTarget in interface BioAssayTreatment
Returns:
gov.nih.nci.mageom.bean.BioAssay.PhysicalBioAssay The value of target.
See Also:
BioAssayTreatment.getTarget()

toXML

public org.w3c.dom.Element toXML(org.w3c.dom.Document doc)
Overrides:
toXML in class BioEventImpl

toXMLDoc

public org.w3c.dom.Element toXMLDoc(org.w3c.dom.Document doc)
Overrides:
toXMLDoc in class BioEventImpl

toXMLProcessor

public org.w3c.dom.Element toXMLProcessor(org.w3c.dom.Document doc,
                                          java.util.ArrayList fillOutValues)
Returns an XML representation of the object. The document is not modified.

Overrides:
toXMLProcessor in class BioEventImpl
Parameters:
doc - the working document
fillOutValues - a list of attribute names that should have full XML for their values.
Returns:
org.w3c.dom.Element an XML representation

getXMLMethodDescriptors

public java.util.Hashtable getXMLMethodDescriptors()
Returns a Hashtable containing XMLMethodDescriptors descriptors of the association methods of this object.

Overrides:
getXMLMethodDescriptors in class BioEventImpl
Returns:
Hashtable The Hashtable of descriptors.

toString

public java.lang.String toString()
Returns a String representation of this object suitable for console display.

Overrides:
toString in class BioEventImpl
Returns:
the String representation.