* Information Content of E. coli promoters * 2006 Oct 14 * * Supplementary Material for * * Anatomy of Escherichia coli sigma70 promoters * Ryan K. Shultzaberger, Zehua Chen, Karen A. Lewis and Thomas D. Schneider * * Contact: * * Dr. Thomas D. Schneider * National Institutes of Health * National Cancer Institute * Center for Cancer Research Nanobiology Program * Molecular Information Theory Group * Frederick, Maryland 21702-1201 * toms@ncifcrf.gov * permanent email: toms@alum.mit.edu (use only if first address fails) * http://www.ccrnp.ncifcrf.gov/~toms/ * * Coordinates are in bases on * GenBank Accesssion number: U00096 * * Individual information and gap surprisals are given in bits. * *-35_Coord -10_Coord Dist Orient Ri(-35) Ri(-10) GS Ri(total) Gene_Start Gene_name 12015 12039 -24 1 4.69053 1.97328 2.41864 4.25416 12163 dnaK 12090 12112 -22 1 6.43266 2.78504 2.32553 6.90117 12163 dnaK 17423 17446 -23 1 4.66174 7.60767 1.42829 10.85012 17489 nhaA 28309 28332 -23 1 1.24002 4.51863 1.42829 4.33936 28374 dapB 29517 29540 -23 1 6.52602 3.68834 1.42829 8.79506 29651 carA 29586 29610 -24 1 5.70052 6.30282 2.41864 9.59369 29651 carA 42292 42314 -22 1 0.31701 5.10288 2.32553 3.10336 42367 fixA 70187 70210 -23 1 4.41517 1.76764 1.42829 4.76351 70387 araC 83770 83746 -24 -1 6.41220 0.73842 2.41864 4.74097 83708 leuL 85359 85381 -22 1 3.92959 5.95806 2.32553 7.57111 85540 ilvI 85382 85408 -26 1 0.36174 4.63297 3.69326 1.31044 85540 ilvI 85502 85526 -24 1 4.46725 5.95806 2.41864 8.01566 85540 ilvI 85564 85587 -23 1 5.34270 3.79803 1.42829 7.72143 87357 ilvH 89554 89578 -24 1 6.41220 6.49334 2.41864 10.49589 89634 yabB 104658 104682 -24 1 2.82480 5.33003 2.41864 5.74518 105305 ftsZ 105013 105036 -23 1 5.17868 2.43625 1.42829 6.19564 105305 ftsZ 122000 122023 -23 1 4.30135 3.75161 1.42829 6.63367 122092 pdhR 122936 122962 -26 1 2.35640 3.03865 3.69326 1.71078 123017 aceE 127683 127706 -23 1 5.55721 7.60767 1.42829 11.74559 127912 lpdA 131485 131508 -23 1 2.65139 5.95806 1.42829 7.19015 131615 acnB 156251 156227 -24 -1 4.35343 4.47807 2.41864 6.42185 156201 ecpD 156273 156247 -26 -1 3.45096 5.19103 3.69326 4.95772 156201 ecpD 186012 185991 -21 -1 6.41220 1.22472 3.28991 4.35600 185947 dapD 208377 208400 -23 1 5.22888 2.84880 1.42829 6.65839 208621 accA 218868 218847 -21 -1 6.41220 6.49334 3.28991 9.62463 218775 proS 223450 223472 -22 1 5.63055 8.37724 2.32553 11.69126 229167 yafB 223560 223582 -22 1 6.52602 6.30282 2.32553 10.51230 229167 yafB 235904 235926 -22 1 4.75509 7.60767 2.32553 10.04623 236067 dnaQ 236875 236899 -24 1 5.51603 2.71567 2.41864 5.82206 237335 CDS_237335-238120 259414 259392 -22 -1 0.35640 2.71312 2.32553 0.75299 259324 phoE 289599 289576 -23 -1 6.07485 5.10288 1.42829 9.75844 289529 argF 328619 328596 -23 -1 5.01043 4.47807 1.42829 8.06920 328558 betI 328611 328635 -24 1 3.40519 1.82714 2.41864 2.82269 328687 betT 354075 354097 -22 1 5.34270 6.56585 2.32553 9.59202 354146 codB 357962 357985 -23 1 4.11451 4.14667 1.42829 6.84188 358023 cynT 365602 365578 -24 -1 5.53674 4.56300 2.41864 7.69010 365529 lacZ 366799 366774 -25 -1 0.71395 3.56684 4.00360 0.28619 366734 lacI 384396 384419 -23 1 5.67103 3.48269 1.42829 7.73442 385431 CDS_385431-386198 405468 405490 -22 1 0.35474 5.87245 2.32553 3.91066 405629 aroL 411795 411771 -24 -1 1.86974 5.22109 2.41864 4.68118 411705 araJ 424175 424198 -23 1 5.17868 5.45152 1.42829 9.21091 424235 queA 431347 431326 -21 -1 0.83407 8.37724 3.28991 5.93040 431237 tsx 450911 450888 -23 -1 5.53674 7.60767 1.42829 11.72512 450834 cyoA 455765 455790 -25 1 1.65473 5.33003 4.00360 2.99015 455901 clpP 455832 455856 -24 1 0.22187 6.93782 2.41864 4.75005 455901 clpP 460521 460544 -23 1 6.05438 3.79343 1.42829 8.42852 460675 hupB 460585 460608 -23 1 5.53719 4.08990 1.42829 8.20779 460675 hupB 519205 519184 -21 -1 4.63215 7.07239 3.28991 8.42363 518989 tesA 552399 552377 -22 -1 5.29275 5.95806 2.32553 8.93427 552323 purE 563888 563912 -24 1 6.52602 0.13412 2.41864 4.25049 565195 CDS_565195-565755 611925 611901 -24 -1 5.70052 7.07239 2.41864 10.36326 611717 fepA 611876 611902 -26 1 6.07485 7.07239 3.69326 9.46297 612038 fes 623985 623962 -23 -1 6.18867 3.55182 1.42829 8.32119 623733 fepB 624019 624042 -23 1 6.41220 2.75161 1.42829 7.74451 624108 entC 638109 638132 -23 1 1.04737 3.01465 1.42829 2.64273 638168 ahpC 698480 698457 -23 -1 2.82480 2.31352 1.42829 3.71902 698400 asnB 699610 699587 -23 -1 4.33272 5.87245 1.42829 8.78588 699549 nagD 702879 702858 -21 -1 3.07268 5.05647 3.28991 4.84824 702834 nagB 702983 702960 -23 -1 0.66471 2.20599 1.42829 1.45141 702834 nagB 703040 703065 -25 1 2.78567 2.38850 4.00360 1.17957 703167 nagE 709973 709951 -22 -1 5.31321 8.37724 2.32553 11.37392 709869 fur 728109 728083 -26 -1 4.24703 3.78167 3.69326 4.34443 727955 kdpA 753918 753897 -21 -1 0.93041 4.59703 3.28991 2.24653 753691 gltA 754022 753998 -24 -1 2.29357 2.53183 2.41864 2.41576 753691 gltA 754144 754167 -23 1 5.53719 7.26291 1.42829 11.38081 754400 sdhC 754590 754616 -26 1 0.71955 6.33542 3.69326 3.37071 754783 sdhD 757774 757795 -21 1 5.55721 1.38744 3.28991 3.66373 757929 sucA 765184 765160 -24 -1 6.43266 7.07239 2.41864 11.09541 765098 farR 770359 770382 -23 1 4.32182 5.72632 1.42829 8.62884 770678 cydA 770475 770498 -23 1 4.82506 6.30282 1.42829 9.70858 770678 cydA 784781 784804 -23 1 5.53674 4.68450 1.42829 8.80194 784856 aroG 808546 808525 -21 -1 3.92959 5.45152 3.28991 6.10020 808480 bioA 808489 808512 -23 1 5.53719 2.75161 1.42829 6.86951 808567 bioB 812340 812364 -24 1 2.19723 4.06106 2.41864 3.84864 812749 uvrB 812653 812674 -21 1 1.91491 8.37724 3.28991 7.01124 812749 uvrB 847305 847280 -25 -1 6.07485 1.42005 4.00360 3.50029 847227 glnH 847453 847430 -23 -1 3.92959 4.59703 1.42829 7.10732 847227 glnH 921934 921912 -22 -1 5.51603 5.72632 2.32553 8.92582 921813 cspD 922267 922293 -26 1 5.51603 6.44436 3.69326 8.27612 922487 clpA 925265 925242 -23 -1 4.98996 5.87245 1.42829 9.44312 921813 cspD 931517 931542 -25 1 6.41220 1.78564 4.00360 4.20322 931818 lrp 940015 940040 -25 1 2.55504 3.75161 4.00360 2.31204 940269 dmsA 953180 953156 -24 -1 3.96400 2.38348 2.41864 3.93784 952777 pflB 953748 953726 -22 -1 2.93120 5.26100 2.32553 5.87566 953689 focA 954071 954049 -22 -1 0.13634 6.49589 2.32553 4.31569 953689 focA 956785 956808 -23 1 2.49117 4.59703 1.42829 5.66890 956876 serC 960351 960375 -24 1 1.75522 8.37724 2.41864 7.72282 960424 cmk 961050 961074 -24 1 3.18261 6.93782 2.41864 7.71079 961218 rpsA 962939 962962 -23 1 6.41220 1.41918 1.42829 6.41208 963051 himD 985000 984978 -22 -1 4.43564 3.78167 2.32553 5.90077 984932 aspC 986349 986326 -23 -1 0.13619 1.89457 1.42829 0.61146 986205 ompF 989670 989648 -22 -1 1.20071 7.26291 2.32553 6.14708 989579 pncB 996818 996796 -22 -1 4.43564 2.57401 2.32553 4.69311 996735 CDS_996735-996160 1010849 1010872 -23 1 3.44636 4.56046 1.42829 6.58752 1011224 pqiA 1015754 1015731 -23 -1 3.26899 5.22109 1.42829 7.07079 1015693 fabA 1019443 1019421 -22 -1 5.53719 5.45152 2.32553 8.67218 1019276 ompA 1020199 1020178 -21 -1 3.79506 0.76912 3.28991 1.28327 1020142 sulA 1036897 1036919 -22 1 4.30323 4.89600 2.32553 6.88270 1036963 appC 1039787 1039809 -22 1 2.07782 3.79803 2.32553 3.55931 1039840 appA 1063089 1063067 -22 -1 4.07782 3.78167 2.32553 5.54296 1062998 cbpA 1078180 1078157 -23 -1 4.65262 2.44003 1.42829 5.67335 1078105 putA 1078400 1078423 -23 1 3.70937 1.75545 1.42829 4.04553 1078528 putP 1078479 1078504 -25 1 0.02413 4.32139 4.00360 0.35091 1078528 putP 1103048 1103070 -22 1 0.93041 4.38540 2.32553 2.99927 1103174 csgB 1108465 1108489 -24 1 4.62056 7.60767 2.41864 9.81859 1108558 mdoG 1145838 1145861 -23 1 0.25000 6.49334 1.42829 5.32405 1146017 yceD 1145980 1146003 -23 1 6.52602 6.30282 1.42829 11.40954 1146017 yceD 1165176 1165202 -26 1 3.54017 5.95806 3.69326 5.81396 1165308 ndh 1194150 1194173 -23 1 4.64127 4.19487 1.42829 7.41685 1194346 icdA 1194197 1194220 -23 1 5.31321 5.26100 1.42829 9.15492 1194346 icdA 1229929 1229952 -23 1 4.16446 3.12818 1.42829 5.87334 1229990 umuD 1236714 1236740 -26 1 6.54648 2.79727 3.69326 5.65949 1236794 dadA 1246679 1246656 -23 -1 2.08316 3.17000 1.42829 3.83386 1246599 treA 1261435 1261411 -24 -1 4.69053 6.56585 2.41864 8.84674 1261098 prsA 1262772 1262795 -23 1 0.25000 4.56300 1.42829 3.39371 1262937 hemA 1262864 1262887 -23 1 4.77556 6.44436 1.42829 9.80062 1262937 hemA 1267042 1267068 -26 1 4.77556 5.56585 3.69326 6.65714 1267388 kdsA 1292215 1292192 -23 -1 4.65262 7.07239 1.42829 10.30571 1292145 hns 1297673 1297647 -26 -1 2.13336 6.93782 3.69326 5.38692 1297344 adhE 1298660 1298683 -23 1 4.33272 7.07239 1.42829 9.98581 1299206 oppA 1309046 1309070 -24 1 6.54648 7.60767 2.41864 11.74451 1309113 tonB 1321167 1321144 -23 -1 6.41220 2.59417 1.42829 7.58707 1321106 trpL 1328810 1328832 -22 1 4.36085 4.43303 2.32553 6.47734 1329072 topA 1328876 1328899 -23 1 0.27605 1.58510 1.42829 0.44186 1329072 topA 1331779 1331801 -22 1 2.58038 7.07239 2.32553 7.33624 1331879 cysB 1337293 1337269 -24 -1 6.41220 1.22472 2.41864 5.22727 1337184 ribA 1339859 1339882 -23 1 2.55089 6.56585 1.42829 7.69745 1339945 pyrF 1341428 1341406 -22 -1 3.77716 7.07239 2.32553 8.53302 1341352 osmB 1347000 1346977 -23 -1 5.15822 3.32033 1.42829 7.05925 1346936 rnb 1347187 1347163 -24 -1 3.18261 6.93782 2.41864 7.71079 1346936 rnb 1386903 1386879 -24 -1 4.33272 6.49334 2.41864 8.41642 1386835 tpx 1397610 1397587 -23 -1 1.58189 7.60767 1.42829 7.77027 1397550 fnr 1451857 1451881 -24 1 3.70937 3.68450 2.41864 4.98423 1451951 CDS_1451951-1452880 1486180 1486204 -24 1 1.18724 1.82714 2.41864 0.60474 1486256 aldA 1496734 1496756 -22 1 3.18190 6.49334 2.32553 7.35871 1496962 rimL 1554588 1554610 -22 1 1.18190 4.14667 2.32553 3.01204 1554649 osmC 1617082 1617105 -23 1 6.52602 7.07239 1.42829 12.17911 1617201 marR 1666648 1666623 -25 -1 5.53650 3.01654 4.00360 4.55843 1666588 mlc 1676035 1676010 -25 -1 4.69123 5.56585 4.00360 6.26247 1675927 pntA 1686498 1686477 -21 -1 4.69123 4.56760 3.28991 5.97791 1686401 fumA 1697287 1697265 -22 -1 1.54506 3.30140 2.32553 2.52992 1697204 malI 1697252 1697273 -21 1 4.77556 7.07239 3.28991 8.56704 1697379 malX 1733317 1733338 -21 1 5.63055 3.78167 3.28991 6.13131 1733402 sodB 1739191 1739214 -23 1 5.65101 7.26291 1.42829 11.49463 1739437 cfa 1744405 1744428 -23 1 6.05438 6.30282 1.42829 10.93791 1744724 CDS_1744724-1745029 1753457 1753481 -24 1 5.29275 8.37724 2.41864 11.26035 1753722 pykF 1755370 1755393 -23 1 0.64425 1.41918 1.42829 0.64413 1755445 lpp 1785219 1785196 -23 -1 3.92959 1.89457 1.42829 4.40486 1785136 ppsA 1793778 1793755 -23 -1 2.25000 6.49334 1.42829 7.32405 1793576 himA 1797360 1797337 -23 -1 6.52602 3.03865 1.42829 8.14537 1797294 pheM 1797820 1797798 -22 -1 1.75522 6.56585 2.32553 6.00454 1797773 rplT 1799404 1799381 -23 -1 1.75522 6.44436 1.42829 6.78028 1798662 infC 1804342 1804365 -23 1 1.18024 2.57401 1.42829 2.33495 1804394 pfkB 1820341 1820318 -23 -1 6.43266 0.64112 1.42829 5.65449 1820280 osmE 1830071 1830050 -21 -1 0.14398 7.07239 3.28991 3.93546 1830006 CDS_1830006-1828786 1840294 1840319 -25 1 5.34270 5.87245 4.00360 7.22055 1840395 gdhA 1860588 1860609 -21 1 0.83407 7.60767 3.28991 5.16083 1860795 gapA 1860725 1860747 -22 1 5.51603 4.42146 2.32553 7.62096 1860795 gapA 1910675 1910653 -22 -1 6.43266 5.00494 2.32553 9.12106 1910600 htpX 1930856 1930835 -21 -1 2.17192 1.57401 3.28991 0.46501 1930780 eda 1932771 1932747 -24 -1 0.68164 5.82349 2.41864 4.09548 1932628 edd 1934433 1934410 -23 -1 3.74511 4.43303 1.42829 6.75884 1934338 zwf 1976432 1976410 -22 -1 0.33037 3.82746 2.32553 1.84129 1976230 flhD 1976453 1976430 -23 -1 5.65101 4.43303 1.42829 8.66475 1976230 flhD 1987631 1987654 -23 1 5.51603 4.45152 1.42829 8.54826 1987704 tyrP 1990907 1990884 -23 -1 6.43266 2.68834 1.42829 7.70170 1990840 pgsA 1992934 1992911 -23 -1 5.63055 5.33003 1.42829 9.54128 1992663 uvrC 1993461 1993437 -24 -1 5.19939 6.30282 2.41864 9.09257 1993382 uvrY 1999874 1999853 -21 -1 2.46169 4.32139 3.28991 3.50216 1999812 fliA 2021824 2021848 -24 1 5.65056 3.29217 2.41864 6.53309 2021990 rcsA 2042525 2042549 -24 1 6.41220 2.71567 2.41864 6.71822 2042885 CDS_2042885-2050036 2053021 2053042 -21 1 4.80505 5.63297 3.28991 7.15710 2053083 amn 2058996 2058972 -24 -1 4.69123 3.15760 2.41864 5.43919 2058936 cbl 2060236 2060262 -26 1 6.41220 0.25418 3.69326 2.98211 2066630 CDS_2066630-2067049 2087797 2087773 -24 -1 2.57551 3.45791 2.41864 3.62377 2087762 yefM 2091351 2091374 -23 1 5.55721 4.19487 1.42829 8.33278 2091487 hisB 2099381 2099358 -23 -1 4.71124 7.26291 1.42829 10.55486 2099290 gnd 2135640 2135618 -22 -1 6.16821 1.27851 2.32553 5.13018 2135265 CDS_2135265-2134126 2229806 2229827 -21 1 1.44636 6.49334 3.28991 4.65879 2229864 cdd 2244985 2244962 -23 -1 5.58670 3.83063 1.42829 7.99803 2244789 cirA 2253305 2253283 -22 -1 2.30715 5.67479 2.32553 5.66541 2253206 yeiK 2284190 2284215 -25 1 6.07485 1.99655 4.00360 4.07679 2286925 CDS_2286925-2287047 2308481 2308459 -22 -1 2.91961 0.53219 2.32553 1.13526 2308425 ada 2310881 2310859 -22 -1 3.58967 2.51000 2.32553 3.78314 2310769 ompC 2337514 2337489 -25 -1 4.11451 8.37724 4.00360 8.49715 2337440 gyrA 2337526 2337548 -22 1 4.82506 7.26291 2.32553 9.77144 2337587 ubiG 2342744 2342767 -23 1 6.07485 4.45407 1.42829 9.10962 2342885 nrdA 2350503 2350482 -21 -1 5.67103 5.56585 3.28991 7.95597 2350394 glpT 2350572 2350593 -21 1 3.77716 2.24697 3.28991 2.74322 2350667 glpA 2432071 2432046 -25 -1 1.06808 4.47807 4.00360 1.55155 2431946 accD 2435936 2435914 -22 -1 3.07268 2.94597 2.32553 3.70212 2435871 pdxB 2439695 2439672 -23 -1 3.26899 4.56760 1.42829 6.41729 2439625 fabB 2459189 2459214 -25 1 6.07485 7.26291 4.00360 9.34315 2459320 fadL 2475806 2475832 -26 1 5.51673 3.42530 3.69326 5.25776 2475867 dsdX 2518784 2518762 -22 -1 3.70868 6.56585 2.32553 7.95800 2518692 gltX 2518829 2518806 -23 -1 5.51673 3.17000 1.42829 7.26743 2518692 gltX 2520559 2520538 -21 -1 1.59853 4.32139 3.28991 2.63901 2520497 xapR 2520618 2520595 -23 -1 2.00366 7.07239 1.42829 7.65676 2520497 xapR 2530328 2530352 -24 1 3.75670 1.43897 2.41864 2.78602 2530429 cysK 2530359 2530385 -26 1 1.58189 5.33003 3.69326 3.22765 2530429 cysK 2531485 2531510 -25 1 5.70052 0.19072 4.00360 1.89663 2531784 ptsH 2531586 2531609 -23 1 1.15815 5.49973 1.42829 5.23858 2531784 ptsH 2533468 2533490 -22 1 3.06784 6.44436 2.32553 7.19566 2533854 crr 2541615 2541590 -25 -1 0.04584 6.44436 4.00360 2.49559 2541548 cysP 2595838 2595812 -26 -1 4.43564 6.44436 3.69326 7.19573 2595638 purC 2597839 2597815 -24 -1 5.34270 4.89600 2.41864 7.82906 2597780 dapA 2597864 2597887 -23 1 5.65101 1.32192 1.42829 5.55363 2598498 bcp 2598422 2598445 -23 1 3.42590 2.38348 1.42829 4.39008 2598498 bcp 2618961 2618939 -22 -1 5.15822 8.37724 2.32553 11.21893 2618919 upp 2632161 2632138 -23 -1 0.57969 8.37724 1.42829 7.53763 2632090 guaB 2632184 2632206 -22 1 5.22888 5.63297 2.32553 8.54532 2632252 xseA 2663388 2663410 -22 1 0.82243 3.61583 2.32553 2.12172 2663434 csiE 2683625 2683603 -22 -1 2.66471 7.26291 2.32553 7.61109 2683527 glyA 2683782 2683806 -24 1 5.53674 5.67479 2.41864 8.80189 2683855 hmpA 2685495 2685472 -23 -1 1.34011 3.12358 1.42829 3.04440 2685428 glnB 2693644 2693621 -23 -1 3.48540 8.37724 1.42829 10.44334 2693563 purL 2705248 2705227 -21 -1 4.64103 1.73379 3.28991 3.09391 2705144 lepA 2729503 2729481 -22 -1 5.51673 8.37724 2.32553 11.57744 2723766 kgtP 2732258 2732234 -24 -1 6.54648 4.47807 2.41864 8.61491 2732193 clpB 2735565 2735589 -24 1 6.41220 3.12818 2.41864 7.13073 2735619 pheL 2739254 2739232 -22 -1 6.43266 3.83063 2.32553 7.94676 2739170 aroF 2748801 2748779 -22 -1 6.43266 5.49973 2.32553 9.61585 2748729 grpE 2796593 2796570 -23 -1 4.32182 5.82349 1.42829 8.72601 2796516 stpA 2796613 2796587 -26 -1 3.44636 8.37724 3.69326 8.13934 2796516 stpA 2802742 2802764 -22 1 6.16821 2.12818 2.32553 5.97985 2802836 proV 2808733 2808756 -23 1 5.65056 5.63297 1.42829 9.86424 2808791 emrR 2820147 2820123 -24 -1 4.11451 4.45407 2.41864 6.15893 2820033 alaS 2821874 2821852 -22 -1 5.58670 8.37724 2.32553 11.64740 2821792 recA 2823783 2823804 -21 1 4.66174 4.68450 3.28991 6.06532 2823855 srlA_1 2866174 2866151 -23 -1 4.36085 5.95806 1.42829 8.89961 2865574 rpoS 2866842 2866817 -25 -1 2.53043 3.29217 4.00360 1.82799 2866776 nlpD 2866887 2866863 -24 -1 2.58038 3.83063 2.41864 4.00137 2866776 nlpD 2874428 2874404 -24 -1 5.31321 5.87245 2.41864 8.77602 2874352 cysD 2890021 2889997 -24 -1 5.67103 4.45152 2.41864 7.71290 2889921 cysJ 2907771 2907748 -23 -1 2.81321 7.26291 1.42829 8.65682 2907688 pyrG 2911886 2911862 -24 -1 2.89958 5.22109 2.41864 5.71103 2911673 relA 2932109 2932130 -21 1 2.44122 3.55182 3.28991 2.71213 2932257 fucP 2940695 2940672 -23 -1 2.53018 8.37724 1.42829 9.48813 2940589 gcvA 2957066 2957043 -23 -1 2.82480 6.44436 1.42829 7.84986 2956906 ptr 2974557 2974579 -22 1 5.01043 1.27851 2.32553 3.97240 2974621 galR 3048828 3048805 -23 -1 2.58038 3.79343 1.42829 4.95452 3048687 gcvT 3071878 3071854 -24 -1 2.19723 5.22109 2.41864 5.00867 3071711 epd 3088262 3088283 -21 1 4.24703 1.25958 3.28991 2.22570 3088366 endA 3088310 3088333 -23 1 6.18867 3.12358 1.42829 7.89295 3088366 endA 3098803 3098782 -21 -1 0.12352 4.32139 3.28991 1.16400 3098747 ansB 3098847 3098821 -26 -1 0.05362 5.72632 3.69326 2.09567 3098747 ansB 3108345 3108368 -23 1 5.51603 4.47807 1.42829 8.57481 3126287 glcC 3126185 3126207 -22 1 2.76521 5.56585 2.32553 6.01452 3126287 glcC 3208242 3208219 -23 -1 5.53674 5.82349 1.42829 9.94094 3208184 ygjD 3208249 3208275 -26 1 1.63426 7.26291 3.69326 5.21291 3208422 rpsU 3208341 3208365 -24 1 5.17868 0.64960 2.41864 3.41865 3208422 rpsU 3210241 3210267 -26 1 0.18273 3.83063 3.69326 0.32909 3210688 rpoD 3210295 3210320 -25 1 6.43266 1.58510 4.00360 4.02316 3210688 rpoD 3213201 3213224 -23 1 3.58967 8.37724 1.42829 10.54762 3214420 CDS_3214420-3215043 3264768 3264746 -22 -1 1.18190 5.82349 2.32553 4.68886 3264706 tdcA 3303536 3303513 -23 -1 2.35640 4.43303 1.42829 5.37014 3303458 mtr 3309461 3309438 -23 -1 4.24703 6.56585 1.42829 9.39359 3309325 rpsO 3315973 3315950 -23 -1 6.18867 6.56585 1.42829 11.33523 3315653 yhbC 3316051 3316027 -24 -1 6.41220 8.37724 2.41864 12.37980 3315653 yhbC 3352112 3352135 -23 1 4.98996 3.79343 1.42829 7.36410 3352267 gltB 3381983 3381960 -23 -1 5.53719 3.17000 1.42829 7.28789 3381903 mdh 3382205 3382226 -21 1 2.93120 7.60767 3.28991 7.25796 3382338 argR 3382278 3382304 -26 1 6.18867 4.59703 3.69326 7.10143 3382338 argR 3402742 3402765 -23 1 5.70052 2.38348 1.42829 6.66470 3403073 accB 3407850 3407873 -23 1 5.31321 6.30282 1.42829 10.19674 3407917 yhdG 3426610 3426588 -22 -1 6.52602 6.30282 2.32553 10.51230 3411102 envR 3426719 3426697 -22 -1 2.28714 8.37724 2.32553 8.34785 3411102 envR 3451111 3451089 -22 -1 4.36085 8.37724 2.32553 10.42156 3450907 rpsJ 3472291 3472268 -23 -1 6.41220 7.60767 1.42829 12.60058 3472189 rpsL 3487894 3487869 -25 -1 6.05438 5.19103 4.00360 7.25081 3487817 argD 3488525 3488499 -26 -1 3.42635 7.60767 3.69326 7.34975 3488466 pabA 3490006 3489983 -23 -1 4.05736 6.56585 1.42829 9.20392 3489934 ppiA 3490119 3490098 -21 -1 1.81875 5.72632 3.28991 4.26415 3489934 ppiA 3513926 3513902 -24 -1 6.43266 5.82349 2.41864 9.84651 3513551 dam 3515271 3515248 -23 -1 3.84321 7.07239 1.42829 9.49630 3514944 damX 3516840 3516816 -24 -1 6.05438 4.32139 2.41864 7.96613 3516124 aroB 3517053 3517030 -23 -1 5.51603 1.86198 1.42829 5.95872 3516903 aroK 3534359 3534335 -24 -1 5.65101 5.33003 2.41864 8.57139 3534222 ompR 3534429 3534406 -23 -1 0.80876 4.08990 1.42829 3.47936 3534222 ompR 3544006 3544030 -24 1 0.17095 6.33542 2.41864 4.09673 3544195 gntT 3550180 3550154 -26 -1 0.61316 3.61583 3.69326 0.54471 3550106 malP 3555774 3555749 -25 -1 5.67103 3.29217 4.00360 4.96859 3555711 yhgL 3559569 3559592 -23 1 2.40739 6.30282 1.42829 7.29092 3559646 glpD 3575309 3575286 -23 -1 5.34270 2.88197 1.42829 6.80538 3575185 gntK 3595395 3595370 -25 -1 4.75509 3.68834 4.00360 4.44882 3595191 livK 3595417 3595395 -22 -1 4.77556 2.05888 2.32553 4.51790 3595191 livK 3597426 3597403 -23 -1 2.08341 4.56300 1.42829 5.22712 3597346 livJ 3598672 3598646 -26 -1 4.64058 7.26291 3.69326 8.21922 3598414 rpoH 3604016 3604042 -26 1 6.52602 5.22109 3.69326 8.06284 3604082 CDS_3604082-3606280 3637580 3637601 -21 1 5.51603 3.30140 3.28991 5.53652 3637741 uspA 3646106 3646129 -23 1 6.52602 1.76764 1.42829 6.87436 3646158 arsR 3651533 3651555 -22 1 3.33714 7.07239 2.32553 8.09299 3651558 slp 3654455 3654432 -23 -1 3.31668 4.08990 1.42829 5.98728 3654370 hdeA 3705534 3705511 -23 -1 5.51603 1.80698 1.42829 5.90372 3705334 dppA 3717483 3717506 -23 1 6.18867 1.60055 1.42829 6.36993 3717678 cspA 3735067 3735088 -21 1 2.94774 3.61583 3.28991 3.28265 3735126 malS 3740267 3740290 -23 1 6.16821 6.49589 1.42829 11.24480 3740362 CDS_3740362-3741360 3769781 3769804 -23 1 4.30135 1.80698 1.42829 4.68904 3769908 mtlA 3780343 3780320 -23 -1 3.35087 1.64652 1.42829 3.57809 3780189 cysE 3844859 3844836 -23 -1 0.96184 6.93782 1.42829 6.48036 3844794 uhpT 3865178 3865156 -22 -1 6.43266 2.31352 2.32553 6.42964 3865049 hslT 3879948 3879927 -21 -1 3.33714 0.46818 3.28991 0.52441 3878849 recF 3880222 3880198 -24 -1 1.20771 1.86198 2.41864 0.66004 3879949 dnaN 3880252 3880226 -26 -1 5.17868 3.42530 3.69326 4.91972 3879949 dnaN 3880395 3880371 -24 -1 2.25000 5.00494 2.41864 4.84530 3879949 dnaN 3881710 3881732 -22 1 2.82480 8.37724 2.32553 8.88551 3881965 rpmH 3881835 3881858 -23 1 6.52602 6.93782 1.42829 12.04454 3881965 rpmH 3909230 3909208 -22 -1 0.02413 5.19103 2.32553 2.89863 3909153 pstS 3912881 3912860 -21 -1 3.92959 5.72632 3.28991 6.37500 3912828 glmU 3920186 3920164 -22 -1 6.43266 8.37724 2.32553 12.49337 3920080 atpI 3924691 3924669 -22 -1 5.70052 7.60767 2.32553 10.99165 3924631 asnC 3924724 3924748 -24 1 6.18867 1.60055 2.41864 5.37958 3924783 asnA 3930912 3930936 -24 1 2.69420 6.49334 2.41864 6.77790 3930941 rbsD 3939104 3939126 -22 1 5.51673 8.37724 2.32553 11.57744 3945709 yifE 3939223 3939245 -22 1 6.52602 7.07239 2.32553 11.28187 3945709 yifE 3947806 3947830 -24 1 4.77556 6.49589 2.41864 8.86180 3947945 ilvL 3947878 3947902 -24 1 3.53972 0.73842 2.41864 1.86849 3947945 ilvL 3949976 3950000 -24 1 6.05438 3.12818 2.41864 6.77292 3950107 ilvE 3955519 3955496 -23 -1 1.22629 6.49589 1.42829 6.30289 3955441 ilvY 3963228 3963254 -26 1 2.78567 6.56585 3.69326 5.66726 3963322 trxA 3963743 3963766 -23 1 3.40519 3.68450 1.42829 5.67039 3963846 rhoL 3988578 3988601 -23 1 4.64058 5.72632 1.42829 8.94760 3988766 cyaA 3995488 3995509 -21 1 4.07782 8.37724 3.28991 9.17416 3995596 uvrD 3998770 3998793 -23 1 5.51603 5.56585 1.42829 9.66259 3999038 corA 4028638 4028615 -23 -1 6.18867 2.94597 1.42829 7.71535 4028561 fadB 4032793 4032815 -22 1 5.51673 8.37724 2.32553 11.57744 4039649 yihD 4040923 4040946 -23 1 4.77556 1.86198 1.42829 5.21824 4040999 dsbA 4047444 4047467 -23 1 3.45726 5.10288 1.42829 7.14085 4048927 yihI 4049489 4049512 -23 1 2.66471 6.49334 1.42829 7.73876 4049619 hemN 4055721 4055696 -25 -1 5.55721 1.28931 4.00360 2.85191 4055614 glnA 4055835 4055811 -24 -1 4.65262 0.99683 2.41864 3.23980 4055614 glnA 4095258 4095281 -23 1 0.33082 5.63297 1.42829 4.54450 4095317 rhaS 4098308 4098329 -21 1 5.19939 8.37724 3.28991 10.29573 4098391 sodA 4107452 4107475 -23 1 4.77556 3.78167 1.42829 7.13793 4107510 cdh 4115776 4115752 -24 -1 2.93120 3.79343 2.41864 4.31498 4115670 glpF 4118023 4117999 -24 -1 2.44097 8.37724 2.41864 8.40857 4117929 menA 4126080 4126057 -23 -1 2.42121 6.49334 1.42829 7.49525 4125975 metJ 4126144 4126121 -23 -1 3.18261 7.60767 1.42829 9.37099 4125975 metJ 4126172 4126148 -24 -1 4.30135 4.68450 2.41864 6.57620 4125975 metJ 4126181 4126204 -23 1 5.51603 4.51863 1.42829 8.61537 4126252 metB 4130089 4130112 -23 1 3.74511 1.32192 1.42829 3.64773 4130196 metF 4131356 4131380 -24 1 1.77638 3.83063 2.41864 3.19737 4131415 katG 4150801 4150778 -23 -1 5.51603 0.29570 1.42829 4.39244 4150677 ppc 4152430 4152451 -21 1 6.41220 5.26100 3.28991 8.39228 4152580 argC 4152509 4152486 -23 -1 4.77556 5.19103 1.42829 8.54730 4152426 argE 4152689 4152665 -24 -1 2.82480 4.56300 2.41864 4.97816 4152426 argE 4156000 4156024 -24 1 5.58670 5.95806 2.41864 9.13511 4156069 oxyR 4160907 4160885 -22 -1 4.30135 6.93782 2.32553 8.92264 4160849 trmA 4160943 4160967 -24 1 4.30135 4.52403 2.41864 6.41574 4161218 btuB 4172925 4172948 -23 1 6.18867 6.56585 1.42829 11.33523 4173523 tufB 4174722 4174746 -24 1 5.51603 3.45791 2.41864 6.56430 4174937 secE 4175900 4175923 -23 1 4.65262 6.93782 1.42829 10.17114 4176025 rplK 4177167 4177190 -23 1 4.64058 6.93782 1.42829 10.15911 4177574 rplJ 4178608 4178629 -21 1 6.52602 1.54981 3.28991 4.79491 4178823 rpoB 4205406 4205428 -22 1 3.35087 8.37724 2.32553 9.41157 4210813 yjaA 4212949 4212971 -22 1 5.70052 4.14667 2.32553 7.53065 4213057 aceB 4221331 4221356 -25 1 4.11451 3.93957 4.00360 4.05947 4221407 metH 4231152 4231130 -22 -1 6.41220 2.59671 2.32553 6.69238 4230812 lysC 4244077 4244055 -22 -1 4.32182 2.43749 2.32553 4.44277 4243998 malE 4244282 4244304 -22 1 4.66104 2.99494 2.32553 5.33944 4244363 malK 4254632 4254655 -23 1 0.72908 7.26291 1.42829 6.57269 4254694 lexA 4271544 4271522 -22 -1 2.21769 5.49973 2.32553 5.40088 4271450 uvrA 4271628 4271652 -24 1 1.42635 6.93782 2.41864 5.95453 4271704 ssb 4275039 4275014 -25 -1 4.11451 7.26291 4.00360 7.38281 4274962 soxS 4322818 4322795 -23 -1 1.65473 0.05041 1.42829 0.28585 4322743 phnC 4327864 4327887 -23 1 4.16446 2.12818 1.42829 4.87334 4328080 proP 4338167 4338144 -23 -1 5.53674 3.20706 1.42829 7.32451 4338102 adi 4339261 4339239 -22 -1 0.10685 5.49973 2.32553 3.29004 4339206 melR 4352413 4352389 -24 -1 0.33082 6.49334 2.41864 4.41452 4352295 lysU 4357722 4357696 -26 -1 2.83322 5.18849 3.69326 4.33744 4357609 cadB 4359572 4359549 -23 -1 3.42635 6.33542 1.42829 8.34248 4359512 cadC 4360242 4360219 -23 -1 5.51603 4.47807 1.42829 8.57481 4359512 cadC 4366047 4366021 -26 -1 1.54506 6.44436 3.69326 4.30515 4365950 aspA 4368159 4368185 -26 1 5.53650 0.61946 3.69326 2.47169 4368266 mopB 4376615 4376593 -22 -1 5.51673 6.93782 2.32553 10.13802 4376522 ampC 4380027 4380004 -23 -1 4.30323 3.12818 1.42829 6.01211 4379896 frdA 4396592 4396618 -26 1 5.53674 3.51864 3.69326 5.37111 4396830 miaA 4397345 4397367 -22 1 3.42565 3.32033 2.32553 4.42944 4397866 hfq 4397763 4397787 -24 1 0.17630 6.93782 2.41864 4.70447 4397866 hfq 4402208 4402230 -22 1 2.02413 6.56585 2.32553 6.27345 4402265 purA 4411793 4411816 -23 1 3.20237 4.38540 1.42829 6.16847 4411838 aidB 4434240 4434219 -21 -1 5.19939 3.08054 3.28991 4.99902 4434143 cpdB 4445946 4445969 -23 1 4.07782 3.32033 1.42829 5.97885 4446018 chpS 4453300 4453324 -24 1 2.93120 7.60767 2.41864 8.12922 4453359 yjfG 4463818 4463797 -21 -1 3.81577 6.49589 3.28991 7.03075 4463754 treB 4464881 4464859 -22 -1 4.33272 3.51864 2.32553 5.53482 4464820 treR 4470159 4470137 -22 -1 2.82480 8.37724 2.32553 8.88551 4470107 pyrL 4475942 4475919 -23 -1 6.07485 5.72632 1.42829 10.38187 4475874 argI 4493917 4493941 -24 1 6.18867 0.90114 2.41864 4.68016 4494318 intB 4515887 4515862 -25 -1 4.32182 2.66414 4.00360 2.99135 4515803 fecI 4538343 4538366 -23 1 5.65101 0.49001 1.42829 4.72173 4538525 fimB 4539406 4539429 -23 1 4.69123 3.55182 1.42829 6.82375 4539605 fimE 4549055 4549076 -21 1 6.41220 2.27851 3.28991 5.40979 4549205 uxuA 4614211 4614237 -26 1 0.27605 6.56585 3.69326 3.15764 4614892 deoC 4622401 4622378 -23 -1 5.34270 2.84880 1.42829 6.77221 4622358 smp 4633012 4633034 -22 1 4.60484 4.56300 2.32553 6.85131 4633090 creA 4638112 4638089 -23 -1 2.66471 4.63297 1.42829 5.87838 4637875 arcA 4638141 4638117 -24 -1 4.77556 3.40970 2.41864 5.77561 4637875 arcA 4638198 4638176 -22 -1 5.31321 6.93782 2.32553 9.93450 4637875 arcA 4638284 4638260 -24 -1 3.58967 6.44436 2.41864 7.62438 4637875 arcA 4638405 4638384 -21 -1 5.65056 6.49334 3.28991 8.86299 4637875 arcA