2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994 | 1993 | 1992 | 1991 | 1990
Roth, B.J., and Basser, P.J. 2009. Mechanical Model of Neural Tissue Displacement During Lorentz Effect Imaging. Magnetic Resonance in Medicine 61:59–64.
Koay, C.G., Özarslan, E., and Basser, P.J. 2009. Signal-Transformational Framework for Breaking the Noise Floor and Its Applications in MRI. Journal of Magnetic Resonance. (In Press)
Koay, C.G. 2009. On the six-dimensional orthogonal tensor representation of the rotation in three dimensions: A simplified approach. Mechanics of Materials. (In Press)
Tasaki, I. 2008. On the Reversible Abrupt Structural Changes in Nerve Fibers Underlying Their Excitation and Conduction Processes. In Phase Transitions in Cell Biology. G. H. Pollack, and W. C. Chin, editors. Springer Science+Business Media B.V. 1-21.
Horkay, F., A. Ryan, N. Langrana, and D. Londono, editors. 2008. Bioinspired Polymer Gels and Networks. MRS, Warrendale, PA.
Lin, D. C., E. K. Dimitriadis, and F. Horkay. 2008. Elasticity models for the spherical indentation of gels and soft biological tissues. In Bioinspired Polymer Gels and Networks. F. Horkay, A. Ryan, N. Langrana, and D. Londono, editors. MRS Symposium Series, Warrendale, PA. 1-6.
Horkay, F. (2008) Biopolymer Gels: Nanostructure and Macroscopic Properties. Progr Colloid Polym Sci 135:10–15.
Basser, P.J. (2008) Diffusion and Diffusion Tensor MR Imaging: Fundamentals. In Magnetic Resonance Imaging of the Brain and Spine. S. W. Atlas, editor. Lippincott Williams and Wilkins, Philadelphia.
Bar-Shir, A., Avram, L., Özarslan, E., Basser, P.J., and Cohen, Y. (2008) The effect of the diffusion time and pulse gradient duration ratio on the diffraction pattern and the structural information estimated from q-space diffusion MR: Experiments and simulations. Journal of Magnetic Resonance. 194(2):230-236.
Horkay, F., and Basser, P.J. (2008) Insensitivity to Salt of Assembly of a Rigid Biopolymer Aggrecan. Physical Review Letters 101:068301-1 – 068301-4.
Pasternak, O., Verma, R., Sochen, N., and Basser, P.J. (2008) On What Manifold Do Diffusion Tensors Live? IJ - 2008 MICCAI Workshop - Manifolds in Medical Imaging: Metrics, Learning and Beyond.
Silva, S., Basser, P.J., and Miranda, P.C. (2008) Elucidating the mechanisms and loci of neuronal excitation by transcranial magnetic stimulation using a finite element model of a cortical sulcus. Clinical Neurophysiology. (In Press)
Wu, M., Chang, L.-C., Walker, L., Lemaitre, H., Barnett, A.S., Marenco, S., and Pierpaoli, C. (2008) Comparison of EPI Distortion Correction Methods in Diffusion Tensor MRI Using a Novel Framework. MICCAI 2008, Part II, LNCS 5242, pp. 321-329.
Irfanoglu, M.O., Machiraju, R., Sammet, S., Pierpaoli, C., and Knopp, M.V. (2008) Automatic Deformable Diffusion Tensor Registration for Fiber Population Analysis. MICCAI 2008, Part II, LNCS 5242, pp. 1014-1022.
Chang, L-C., Koay, C.G., Basser, P.J., and Pierpaoli, C. (2008) Linear Least-Squares Method for Unbiased Estimation of T1 From SPGR Signals. Magnetic Resonance in Medicine 60:496–501.
Sarlls, J.E. and Pierpaoli, C. (2008) Diffusion-Weighted Radial Fast Spin-Echo for High-Resolution Diffusion Tensor Imaging at 3T. Magnetic Resonance in Medicine 60:270–276.
Bencherif, S.A., Srinivasan, A., Horkay, F., Hollinger, J.O., Matyjaszewski, K., and Washburn, N.R. (2008) Influence of the degree of methacrylation on hyaluronic acid hydrogels properties. Biomaterials 29: 1739–1749.
Horkay, F. and Hammouda, B. (2008) Small-angle neutron scattering from typical synthetic and biopolymer solutions. Colloid Polym Sci 286:611–620.
Avram, L., Özarslan, E., Assaf, Y., Bar-Shir, A., Cohen, Y., Basser, P.J. (2008) Three-dimensional water diffusion in impermeable cylindrical tubes: theory versus experiments. NMR Biomed. 21: 888–898.
Kim, S., Barnett, A.S., Pierpaoli, C., and Chi-Fishman, G. (2008) Three-dimensional mapping of lingual myoarchitecture by diffusion tensor MRI. NMR Biomed. 21: 479–488.
Assaf, Y., Blumenfeld-Katzir, T., Yovel, Y., and Basser, P.J. (2008) AxCaliber: A Method for Measuring Axon Diameter Distribution from Diffusion MRI. Magnetic Resonance in Medicine 59:1347–1354.
Koay, C.G., Nevo, U., Chang, L.C., Pierpaoli, C., and Basser, P.J. (2008) The elliptical cone of uncertainty and its normalized measures in diffusion tensor imaging. IEEE Trans Med Imag 27(6): 834-846.
Lin, D.C. and Horkay, F. (2008) Nanomechanics of polymer gels and biological tissues: A critical review of analytical approaches in the Hertzian regime and beyond. Soft Matter 4:669-682.
Horkay, F., Basser, P.J., Hecht, A-M., and Geissler, E. (2008) Gel-like behavior in aggrecan assemblies. J Chem Phys 128:135103(1-7).
Özarslan, E. and Basser, P.J. (2008) Microscopic anisotropy revealed by NMR double pulsed field gradient experiments with arbitrary timing parameters. J Chem Phys 128:154511(1-11).
Komlosh, M.E., Lizak, M.J., Horkay, F., Freidlin, R.Z., and Basser, P.J. (2008) Observation of Microscopic Diffusion Anisotropy in the Spinal Cord Using Double-Pulsed Gradient Spin Echo MRI. Magnetic Resonance in Medicine 59:803–809.
Özarslan, E., Nevo, U. and Basser, P.J. (2008) Anisotropy induced by macroscopic boundaries: Surface normal mapping using diffusion-weighted imaging. Biophys J 94(7):2809-2818.
McMillan, K.M., Rogers, B.P., Koay, C.G., Laird, A.R., Price, R.R., and Meyerand, M.E. (2007) An objective method for combining multi-parametric MRI datasets to characterize malignant tumors. Med. Phys. 34:1053–1061.
Horkay, F., and McKenna, G.B. (2007) Polymer Networks and Gels. In Physical Properties of Polymers Handbook. James E. Mark, editor. Springer, New York.
Horkay, F., Basser, P.J., Hecht, A-M., and Geissler, E. (2007) Comparative study of scattering and osmotic properties of synthetic and biopolymer gels. Macromol. Symp. 256:80-87.
Geissler, E., Hecht, A-M., and Horkay, F. (2007) Scaling Equations for a Biopolymer in Salt Solution. Physical Review Letters 99: 267801-1 – 267801-4.
Silva, C.C., Lin, D.C., Horkayne-Szakaly, I., Basser, P.J., and Horkay, F. (2007) Novel Applications of the QCM Technique in Biomaterials Science. Bioinspired Polymer Gels and Networks, edited by F. Horkay, N.A. Langrana, A.J. Ryan, and J.D. Londono (Mater. Res. Soc. Symp. Proc. Volume 1060E, Warrendale, PA, 2007), 1060-LL03-06
Boukari, H., Silva, C., Nossal, R., and Horkay, F. (2007) Monitoring nanoprobe diffusion in osmotically-stressed hydrogels. Bioinspired Polymer Gels and Networks, edited by F. Horkay, N.A. Langrana, A.J. Ryan, and J.D. Londono (Mater. Res. Soc. Symp. Proc. Volume 1060E, Warrendale, PA, 2007), 1060-LL07-03
Lin, D.C., Dimitriadis, E.K., and Horkay, F. (2007) Robust strategies for automated AFM force curve analysis - II. Adhesion-influenced indentation of soft, elastic materials. Journal of Biomechanical Engineering-Transactions of the ASME 129:904-912.
Lin, D.C., Dimitriadis, E.K., and Horkay, F. (2007) Elasticity of rubber-like materials measured by AFM nanoindentation. eXPRESS Polymer Letters 1:576-584.
Hauben, E., Roncarolo M,G., Draghici, E., Nevo, U. (2007) The role of tissue adaptation and graft size in immune tolerance. Transplant Immunology; 18(2):122-5.
Nevo, U., Hauben, E. (2007) Ecoimmunity: immune tolerance by symmetric co-evolution. Evolution and Development; 9(6):632-42.
Van Thienen, T.G., Horkay, F., Braeckmans, K., Stubbe, B.G., Demeester, J., and De Smedt, S.C (2007) Influence of free chains on the swelling pressure of PEG-HEMA and dex-HEMA hydrogels. International Journal of Pharmaceutics 337:31-39.
Lin, D.C., Dimitriadis, E.K., and Horkay, F. (2007) Robust strategies for automated AFM force curve analysis - I. Non-adhesive indentation of soft, inhomogeneous materials. Journal of Biomechanical Engineering-Transactions of the ASME 129: 430-440.
Michelman-Ribeiro, A., Horkay, F., Nossal, R., and Boukari, H. (2007) Probe diffusion in aqueous poly(vinyl alcohol) solutions studied by fluorescence correlation spectroscopy. Biomacromolecules 8: 1595-1600.
Basser, P.J. and Pajevic, S. (2007) Spectral decomposition of a 4th-order covariance tensor: Applications to diffusion tensor MRI. Signal Processing 87:220-236.
Chang, L-C., Koay, C.G., Pierpaoli, C., and Basser, P.J. (2007) Variance of estimated DTI-derived parameters via first-order perturbation methods. Magn Reson Med. 57:141-149.
Cheng Guan Koay, Lin-Ching Chang, Carlo Pierpaoli, Peter J. Basser. Error Propagation Framework
for Diffusion Tensor Imaging via Diffusion Tensor Representations. IEEE Trans Med Imaging 26(8):1017-1034.
There are several unpleasant errors due to the IEEE production. A preprint is made available here that has correct layout of equations: download preprint. The erratum can be found here: download erratum
Cheng Guan Koay, Joelle E. Sarlls, Evren Özarslan. (2007) Three-dimensional analytical magnetic resonance imaging phantom in the Fourier domain. Magn Reson Med. 58: 430-436. [Download software]
Jian, B., Vemuri, B.C., Özarslan, E., Carney, P.R. and Mareci, T.H. (2007) A novel tensor distribution model for diffusion weighted MR signal. NeuroImage 37:164-176. Erratum.
Shepherd, T.M., Özarslan, E., Yachnis, A.T., King, M.A. and Blackband, S.J. (2007) Diffusion tensor microscopy indicates the cytoarchitectural basis for diffusion anisotropy in the human hippocampus. Am J Neuroradiol. 28:958-964.
Miranda, P.C., Correia, L., Salvador, R., and P.J. Basser. (2007) Tissue heterogeneity as a mechanism for localized neural stimulation by applied electric fields. Phys. Med. Biol. 52 5603-5617.
Özarslan, E., and Basser, P.J. (2007) MR diffusion-"diffraction" phenomenon in multi-pulse-field-gradient experiments. J Magn Reson 188:285-294.
Waber, D.P., De Moor, C., Forbes, P.W., Almli, C.R., Botteron, K.N., Leonard, G., Milovan, D., Paus, T., Rumsey, J., and the Brain Development Cooperative Group. (2007) The NIH MRI study of normal brain development: Performance of a population based sample of healthy children aged 6 to 18 years on a neuropsychological battery. Journal of the International Neuropsychological Society 13:1-18.
Almli, C.R., Rivkin, M.J., McKinstry, R.C., and the Brain Development Cooperative Group. (2007) The NIH MRI study of normal brain development (Objective-2): Newborns, infants, toddlers, and preschoolers. NeuroImage 35:308-325.
Marenco, S., Siuta, M.A., Kippenhan, J.S., Grodofsky, S., Chang, W., Kohn, P., Mervis, C.B., Morris, C.A., Weinberger, D.R., Meyer-Lindenberg, A., Pierpaoli, C., and Berman, K.F. (2007) Genetic contributions to white matter architecture revealed by diffusion tensor imaging in Williams syndrome. PNAS 38: 15117-15122.
Komlosh, M.E., Horkay, F., Freidlin, R.Z., Nevo, U., Assaf, Y., and Basser, P.J. (2007) Detection of microscopic anisotropy in gray matter and in a novel tissue phantom using double Pulsed Gradient Spin Echo MR. Journal of Magnetic Resonance 189:38-45.
R. Z. Freidlin, E. Özarslan, M. E. Komlosh, L.-C. Chang, C. G. Koay, D. K. Jones, and P. J. Basser. (2007) “Parsimonious model selection for tissue segmentation and classification applications: A study using simulated and experimental DTI data.” IEEE T Med Imaging 26(11):1576-1584.
Boukari, H., A. Michelman Ribeiro, R. Nossal, and F. Horkay. 2006. Fluorescence correlation spectroscopy study of TAMRA diffusion in poly(vinyl-alcohol) and Ficoll70 solutions. In Biomimetic Polymers and Gels. Mater. Res. Soc. Symp., Warrenton, PA. 1-6.
Marenco, S., R. Rawlings, G.K. Rohde, A.S. Barnett, R.A. Honea, C. Pierpaoli, and D.R. Weinberger. 2006. Regional distribution of measurement error in diffusion tensor imaging. Psychiatry Research 147:69-78.
Basser, P. J. (2006) Diffusion Tensor MR Imaging Fundamentals. In Clinical Magnetic Resonance Imaging. R. R. Edelman, J. Hesselink, M. Zlatkin, and J. V. C. III, editors. Saunders Elsevier, Philadelphia, 320-332.
Horkay, F., Hecht, A-M., and Geissler, E. (2006) Similarities between polyelectrolyte gels and biopolymer solutions. Journal of Polymer Science Part B-Polymer Physics 44: 3679-3686.
Horkay, F., Han, M-H., Han, I.S., Bang, I-S., Magda, J.J. (2006) Separation of the effects of pH and polymer concentration on the swelling pressure and elastic modulus of a pH-responsive hydrogel. Polymer 21: 7335-7338.
Assaf, Y., Ben-Sira, L., Constantini, S., Chang, L-C., and Beni-Adani, L. (2006) Diffusion tensor imaginig in hydrocephalus: Initial Experience. AJNR Am J Neuroradiol 27:1717-1724.
Carew, J.D., Koay, C.G., Wahba, G., Alexander, A.L., Meyerand, M.E., and Basser, P.J. (2006) The asymptotic behavior of the nonlinear estimators of the diffusion tensor and tensor-derived quantities with implications for group analysis.
Horkay, F., Hecht, A.M., Rochas, C., Basser, P.J., and Geissler, E. (2006) Anomalous small angle x-ray scattering determination of ion distribution around a polyelectrolyte biopolymer in salt solution. J. Chem. Phys. 125:234904.
Jones, D. K., Catani, M., Pierpaoli, C., Reeves, S. J. C., Shergill, S. S., O’Sullivan, M., Golesworthy, P., McGuire, P., Horsfield, M. A., Simmons, A., Williams, S. C. R., and Howard, R. J. (2006) Age Effects on Diffusion Tensor Magnetic Resonance Imaging Tractography Measures of Frontal Cortex Connections in Schizophrenia. Hum Brain Mapp 27:230-238.
Koay, C. G. and Basser, P. J. (2006) Analytically exact correction scheme for signal extraction from noisy magnitude MR signals. J Mag Res. 179:317-322.
Koay, C.G., Carew, J.D., Alexander, A.L., Basser, P.J., and Meyerand, M.E. (2006) Investigation of anomalous estimates of tensor-derived quantities in diffusion tensor imaging. Magn Reson Med. 55:930-936.
Koay, C.G., Chang, L-C., Carew, J.D., Pierpaoli, C., and Basser, P.J. (2006) A unifying theoretical and algorithmic framework for least squares methods of estimation in diffusion tensor imaging. J Magn Reson. 182:115-125. [For software request, please write to the corresponding author at guankoac@mail.nih.gov]
Lin, D.C., Dimitriadis, E.K., and Horkay, F. (2006) Advances in the mechanical characterization of soft materials by nanoindentation. In Recent Research Developments in Biophysics (Ed: Pandalai, S.G.), Vol. 5 Part II, pp. 333-370, Transworld Research Network, Kerala, India, 2006.
Özarslan, E., Basser, P.J., Shepherd, T.M., Thelwall, P.E., Vemuri, B.C., and Blackband, S.J. (2006) Observation of anomalous diffusion in excised tissue by characterizing the diffusion-time dependence of the MR signal. J Magn Reson. 183:315-323.
Özarslan, E., Shepherd, T.M., Vemuri, B.C., Blackband, S.J., and Mareci, T.H. (2006) Resolution of complex tissue microarchitecture using the diffusion orientation transform (DOT). Neuroimage 31:1086-1103.
Pajevic, S., Aldroubi, A., and Basser, P.J. (2006) Continuous Tensor Field Approximation of Diffusion Tensor MRI data. In J. Weickert & H. Hagen (Eds.), Visualization and Processing of Tensor Fields (299-314). Berlin Germany: Springer.
Color Plates
Shepherd, T.M., Özarslan, E., King, M.A., Mareci, T.H. and Blackband, S.J. (2006) Structural insights from high-resolution diffusion tensor imaging and tractography of the isolated rat hippocampus. NeuroImage. 32:1499-1509.
Tasaki, I. (2006) A note on the local current associated with the rising phase of a propagating impulse in nonmyelinated nerve fibers. Bulletin Math Biol.
Evans, A.C., and the Brain Development Cooperative Group. (2006) The NIH MRI study of normal brain development. NeuroImage 30:184-202.
Horkay, F., Basser, P.J., Hecht, A-M., and Geissler, E. (2005) Effect of calcium ions on the structure of synthetic and biopolymer gels. Polymeric Materials: Scientific Engineering 93:105–106.
Horkay, F., and E. J. Amis, editors. 2005. Biological and Synthetic Polymer Networks and Gels. Wiley VCH, Weinheim.
Michelman-Ribeiro, A., H. Boukari, R. Nossal, and F. Horkay. 2005. Fluorescence Correlation Spectroscopy Study of Probe Diffusion in Poly(vinyl alcohol) Solutions and Gels. Macromol. Symp. 227:221-230.
Jones, D. K., Catani, M., Pierpaoli, C., Reeves, S. J.,Sukhwinder S. S., Sullivan, M. O., Maguire, P., Horsfield, M. A., Andrew Simmons, A., Williams, S.C.R., and Howard, R. J. (2005) A Diffusion TensorMagnetic Resonance Imaging Study of Frontal Cortex Connections in Very-Late-Onset Schizophrenia-Like Psychosis. Am J Geriatr Psychiatry 13:1092-1099.
Geissler, E., Hecht, A-M., and Horkay, F. (2005) Nanoscale inhomogeneities and thermodynamics of unfulfilled polymer gels. Journal of Macromolecular Science, Part B: Physics 44:873-880.
Lin-Gibson, S., Bencherif, S., Antonucci, J.M., Jones, R.L., and Horkay, F. (2005) Synthesis and characterization of poly(ethylene glycol) dimethacrylate hydrogels. Macromol. Symp. 227:243-254.
Hammouda, B., Horkay, F., and Becker, M.L. (2005) Clustering and Solvation in Poly(acrylic acid) Polyelectrolyte Solutions. Macromolecules 38:2019-2021.
Assaf, Y. and Basser, P.J. (2005) Composite hindered and restricted model of diffusion (CHARMED) MR imaging of the human brain. Neuroimage 27:48-58.
Basser, P. J. and Horkay, F. (2005) Toward a constitutive law of cartilage: A polymer physics perspective. Macromol. Symp. 227:53-64.
Boguñá, M., Pajevic, S., Basser, P.J., and Weiss, G.H. (2005) A model for noise effects on fibre tract trajectories in diffusion tensor imaging: theory and simulations. New Journal of Physics 7:1-7.
Chang, L.C., Jones, D.K., and Pierpaoli, C. (2005) RESTORE: Robust estimation of tensors by outlier rejection. Magn Reson Med. 53:1088-1095.
Geissler, E., Hecht, A.M, Rochas, C. Horkay, F. and Basser, P.J. (2005) Light, small angle neutron and X-Ray scattering from gels. Macromol, Symp 227:27-37.
Hauben, E., Roncarolo, M.G., Nevo, U., and Schwartz, M. (2005) Beneficial autoimmunity in Type 1 diabetes mellitus. Trends in Immunology 26:248-253.
Horkay, F., Basser, P.J., Hecht, A-M., and Geissler, E. (2005) Structural investigations of a neutralized polyelectrolyte gel and an associating neutral hydrogel. Polymer. 46:4242-4247.
Horkay, F., Horkayne-Szakaly, I., and Basser, P.J. (2005) Measurement of the osmotic properties of thin polymer films and biological tissue samples. Biomacromolecules 6:988-993.
Jones, D.K. and Pierpaoli, C. (2005) Confidence mapping in diffusion tensor magnetic resonance iImaging tractography using a bootstrap approach. Magn Reson Med. 53:1143-1149.
Jones, D.K., Travis, A.R., Eden, G., Pierpaoli, C., and Basser, P.J. (2005) PASTA: pointwise assessment of streamline tractography attributes. Magn Reson Med. 53:1462-1467.
Kim, S.,Chi-Fishman, G., Barnett,A. S., and Pierpaoli, C. (2005) Dependence on diffusion time of apparent diffusion tensor of ex vivo calf tongue and heart. Mag Res in Med 54:1387-1396.
Lin-Gibson, S., Jones, R.L., Washburn, N.R., and Horkay, F. (2005) Structure-property relationships of photopolymerizable poly(ethylene glycol) dimethacrylate hydrogels. Macromolecules 38: 897-2902.
Rohde, G.K., Barnett, A.S., Basser, P.J., and Pierpaoli, C. (2005) Estimating intensity variance due to noise in registered images: Applications to diffusion tensor MRI. Neuroimage 26:673-684.
Sen, P.N. and Basser, P.J. (2005) A model for diffusion in white matter in the brain. Biophysical Journal 89:2927-2938.
Sen, P.N. and Basser, P.J. (2005) Modeling diffusion in white matter in the brain:
A composite porous medium. Magn Reson Imaging 23:215-220.
Tasaki, I. (2005) Reptitive abrupt structural changes in polyanionic gels: A comparison with analogous processses in nerve fibers. J. theor. Biol. 236:2-11.
Rohde, G.K., Pajevic, S., amd Pierpaoli, C. (2004) Multi-channel registration of diffusion-tensor images using directional information. 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano 712–715.
Lange, N., D.K. Jones, and C. Pierpaoli. (2004) A closed-form method for improving inter-subject coherence in diffusion tensor magnetic resonance imaging. In ISBI, Crystal City, VA. 1506-1509.
Michelman-Ribeiro, A., Boukari, H., Nossal, R., and Horkay, F. (2004) Structural Changes in Polymer Gels Probed by Fluorescence Correlation Spectroscopy. Macromolecules 37:10212-10214.
Amsden, B.G., Stubbe, B.G., Horkay, F., De Smedt, S.C., and Demeester, J. (2004) Modeling the swelling pressure of degrading hydroxyethylmethacrylate-grafted dextran hydrogels. J Polym Sci Part B: Polym Phys. 42:3397-3404.
Assaf, Y., Freidlin, R.Z., Rohde, G.K., and Basser, P.J. (2004) New modeling and experimental framework to characterize hindered and restricted water diffusion in
brain white matter. Magn Reson Med. 52:965-978.
Basser, P.J. (2004) Scaling laws for myelinated axons derived from an electrotonic core-conductor model. Journal of Integrative Neuroscience 3(2):227-244.
Horkay, F. and Basser, P.J. (2004) Osmotic observations on chemically cross-linked DNA gels in physiological salt solutions. Biomacromolecules 5:232-237.
Jones, D.K. (2004) The effect of gradient sampling schemes on measures derived from diffusion tensor MRI: a Monte Carlo study. Magn Reson Med. 51:807-815.
Jones, D.K. and Basser, P.J. (2004) Squashing Peanuts and Smashing Pumpkins”: How Noise Distorts Diffusion-Weighted MR Data. Magn Reson Med. 52:979-993.
Lin-Gibson, S., Bencherif, S., Cooper, J.A., Wetzel, S.J., Antonucci, J.M., Vogel, B.M., Horkay, F., and Washburn. N.R. (2004) Synthesis and characterization of PEG dimethacrylates and their hydrogels. Biomacromolecules 5:1280-1287.
Morfin, I., Horkay, F., Basser, P.J., Bley, F., Hecht, A., Rochas, C., and Geissler, E. (2004) Adsorption of Divalent Cations on DNA. Biophysical Journal 87:2897-2904.
Rohde, G.K., Barnett, A.S., Basser, P.J., Marenco, S., and Pierpaoli, C. (2004) Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magn Reson Med. 51:103-114.
Tasaki, I. (2004) On the conduction velocity of nonmyelinated nerve fibers. Journal of Integrative Neuroscience 3(2):115-124.
Washburn, N.R., Weir, M., Anderson, P., and Potter, K. (2004) Bone formation in polymeric scaffolds evaluated by proton magnetic resonance microscopy and x-ray microtomography. J Biomed Mater Res. 69A:738-747.
| 2003 |
Jones, D.K. (2003) Determining and visualizing uncertainty in estimates of fiber orientation from diffusion tensor MRI. Magn Reson Med. 49: 7-12.
Basser, P.J. and Pajevic, S. (2003) A normal distribution for tensor-valued random variables: applications to diffusion tensor MRI. IEEE Trans Med Imaging 22:785-794.
Basser, P.J. and Pajevic, S. (2003) Dealing with uncertainty in diffusion tensor MR data. Israel Journal of Chemistry 43:129-144.
Horkay, F. and Basser, P.J. (2003) Osmotic properties of polyelectrolyte hydrogels in physiological salt solutions. Recent Res. Devel. Macromol. 7:293-313.
Horkay, F., Basser, P.J., Hecht, A.M., and Geissler, E. (2003) Calcium induced volume transition in polyelectrolyte gels. Macromol Symp. 200:21-30.
Miranda, P.C., Hallett, M., and Basser, P.J. (2003) The electric field induced in the brain by magnetic stimulation: a 3-D finite element analysis of the effect of tissue heterogeneity and anisotropy. IEEE Trans. Bio. Med. Eng. 50:1074-1085.
Morfin, I., Horkay, F., Basser, P.J., Bley, F., Ehrburger-Dolle, F., Hecht, A., and Geissler, E. (2003) Ion condensation in a polyelectrolyte gel. Macromol Symp. 200:227-233.
Pajevic, S. and Basser, P.J. (2003) Parametric and non-parametric statistical analysis of DT-MRI data. J Magn Reson. 161:1-14.
Rohde, G.K., Aldroubi, A., and Dawant, B.M. (2003) The adaptive bases algorithm for intensity-based nonrigid image registration. IEEE Trans Med Imaging 22:1470-1479.
Stubbe, B.G., Horkay, F., Amsden, B., Hennink, W.E., De Smedt, S.C., and Demeester, J. (2003) Tailoring the swelling pressure of degrading dextran hydroxyethyl methacrylate hydrogels. Biomacromolecules 4:691-695.
| 2002 |
Basser, P.J. (2002) Relationships between diffusion tensor and q-space MRI. Magn Reson Med. 47:392-397.
Basser, P.J. and Jones, D.K.
(2002) Diffusion-tensor MRI: theory, experimental design and data analysis - a technical review. NMR Biomed. 15: 456-467.
Basser, P.J., Pajevic, S., et al. (2002) Fiber tract following in the human brain using DT-MRI data. IEICE Trans. Inf. & Syst. E85-D(1):15-21.
Dimitriadis, E.K., Horkay, F., Maresca,
J., Kachar, B., and Chadwick, R.S. (2002) Determination of elastic moduli of thin layers of soft material using the
atomic force microscope. Biophysical Journal 82:2798-2810.
Han, I.S., Han, M., Kim, J., Lew,
S., Lee, Y.J., Horkay, F., and Magda, J.J. (2002) Constant-volume hydrogel osmometer: a new device concept
for miniature biosensors. Biomacromolecules 3:1271-1275.
Hecht, A., Horkay, F., Schleger, P.,
and Geissler, E. (2002) Thermal fluctuations in polymer gels investigated by neutron spin
echo and dynamic light scattering. Macromolecules 35:8552-8555.
Horkay, F., Basser, P.J., Hecht,
A., and Geissler, E. (2002) Calcium-induced volume transition in polyacrylate
hydrogels swollen in physiological salt solutions. Macromol. Biosci. 2:207-213.
Horkay, F., Hecht, A., Grillo,
I., Basser, P.J., and Geissler, E, (2002) Experimental evidence for two thermodynamic length scales
in neutralized polyacrylate gels. J Chem Phys. 117:9103-9106.
Pajevic, S., Aldroubi, A., and Basser, P.J. (2002) A continuous tensor field approximation of discrete DT-MRI data
for extracting microstructural and architectural features of tissue. J of Magn Reson. 154:85-100.
Pierpaoli, C. (2002) Inferring structural and architectural features of brain tissue from DT-MRI measurements. CNS Spectrums 7:510-515.
Potter, K., Leapman, R.D., Basser, P.J., and Landis, W.J. (2002) Cartilage calcification studied by proton nuclear magnetic resonance microscopy. J Bone Miner Res. 17: 652-660.
Smith, C. (2002) NIH commercializes new imaging technique. Nature Medicine 8(9): 906.
Stubbe, B.G., Braeckmans, K., Horkay,
F., Hennink, W.E., De Smedt, S,C,, and Demeester, J. (2002) Swelling pressure observations on degrading Dex-HEMA hydrogels. Macromolecules 35:2501-2505.
Tasaki, I. (2002) Spread of discrete structural changes in synthetic polyanionic gel:
a model of propagation of a nerve impulse. J. theor. Biol. 218:497-505.
Tasaki, I. and Matsumoto, G. (2002) On the cable theory of nerve conduction. Bulletin of Mathematical Biology 64:1069-1082.
Jones, D.K. (2002) Determining and visualizing uncertainty in estimates of fiber orientation from diffusion tensor MRI. Magnetic Resonance in Medicine 49:7-12.
| 2001 |
Hasan, K.M., Basser, P.J., Parker, D.L., and Alexander, A.L. (2001) Analytical Computation of the Eigenvalues and Eigenvectors in DT-MRI. Journal of Magnetic Resonance 152:41-47.
Alexander, D.C., et al. (2001) Spatial transformations of diffusion tensor magnetic resonance images.
IEEE Trans Med Imaging 20(11):1131-1139.
Hecht, A., Horkay, F., and Geissler,
E. (2001) Neutron scattering investigations on a bimodal polymer gel. J Phys Chem. 105:5637-5642.
Hecht, A., Horkay, F., and Geissler, E. (2001) Structure of polymer solutions containing fumed silica. Phys Rev. 64:041402-1-041402-6.
Horkay, F., Hecht, A., et al. (2001) Comparison between neutral gels and neutralized polyelectrolyte gels in the presence of divalent cations. Macromolecules 34:4285-4287.
Horkay, F., Tasaki, I., and Basser, P.J. (2001) Effect of monovalent-divalent cation exchange on the swelling of polyacrylate hydrogels in physiological salt solutions. Biomacromolecules 2:195-199.
Pierpaoli, C., et al. (2001) Water diffusion changes in wallerian degeneration and their dependence on white matter architecture. Neuroimage 13:1174-1185.
| 2000 |
Basser, P.J., Pajevic, S. (2000) Statistical artifacts in diffusion tensor MRI (DT-MRI)
caused by background noise. Magn Reson
Med. 44:41-50.
Basser, P.J., Pajevic, S., et al. (2000) In vivo fiber tractography using DT-MRI data. Magn Res Med 44:625-632.
Basser, P.J. and Roth, B.J. (2000) New currents in electrical stimulation of excitable tissues. Annu Rev Biomed Eng. 02:377-397.
Horkay, F., Basser, P.J., et al. (2000) Osmotic and SANS observations on sodium polyacrylate hydrogels in physiological salt solutions. Macromolecules 33:8329-8333.
Horkay, F., McKenna, G., et al. (2000) Neutron scattering properties of randomly cross-linked polyisoprene gels. Macromolecules 33:5215-5220.
Horkay, F., Tasaki, I., and Basser, P.J. (2000) Osmotic swelling of polyacrylate hydrogels in physiological salt solutions. Biomacromolecules 1:84-90.
| 1999 |
Aldroubi, A. and Basser, P.J. (1999) Reconstruction of vector and tensor fields from sampled discrete data. Contemporary Mathematics 247:1-15.
Barratti, C., Barnett, A.S., and Pierpaoli, C. (1999) Comparative MR imaging study of brain maturation in kittens with T1, T2, and the trace of the diffusion tensor. Radiology 210:133-142.
Pajevic, S. and Pierpaoli, C. (1999) Color schemes to represent the orientation of anisotropic tissues from diffusion tensor data: application to white matter fiber tract mapping in the human brain. Magn Reson Med. 42:526-540.
Tasaki, I. (1999) Evidence for phase transition in nerve fibers, cells and synapses. Ferroelectrics 220:305-316.
Tasaki, I. (1999) Rapid structural changes in nerve fibers and cells associated with their excitation processes. Jap J Physiol. 49:125-138.
Virta, A., Barnett, A., and Pierpaoli, C. (1999) Visualizing and characterizing white matter fiber structure and architecture in the human pyramidal tract using diffusion tensor MRI. Magn Reson Imaging 17:1121-1133.
| 1998 |
Basser, P.J. and Pierpaoli, C. (1998) A simplified method to measure the diffusion tensor from seven MR images. MRM 39:928-934.
Basser, P.J., Schneiderman, R., et al. (1998) Mechanical properties of the collagen network in human articular cartilage as measured by osmotic stress technique. Arch Biochem Biophys. 351(2):207-219.
Shrager, R.I. and Basser, P.J. (1998) Anisotropically weighted MRI. MRM 40:160-165.
Tasaki, I. (1998) Repetitive mechanical responses of the amphibian skin to adrenergic stimulation. Jap J Physiol. 48:297-300.
| 1997 |
Basser, P.J. (1997) New histological and physiological stains derived from diffusion-tensor MR images. J. Ann NY Acad Sci. 820:123-138.
Mattiello, J., Basser, P.J., and LeBihan, D. (1997) The b matrix in diffusion tensor echo-planer imaging. Magn Reson Med. 37:292-300.
Tasaki, I. (1997) Rapid volume expansion in the torpedo electric organ associated with its postsynaptic potential. Biochem Biophys Res Comm. 233:305-308.
| 1996 |
Basser, P.J. and Pierpaoli, C. (1996) Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J Magn Reson B. 111:209-219.
George, M.S., Wassermann, E.M., Williams, W.A., Steppel, J., Pascual-Leone, A., Basser, P.J., Hallett, M., and Post, R.M. (1996) Changes in mood and hormone levels after rapid-rate transcranial magnetic stimulation (rTMS) of the prefrontal cortex. The Journal of Neuropsychiatry and Clinical Neurosciences. 8:172-180.
Pierpaoli, C., Jezzard, P., Basser, P.J., Barnett, A., and Chiro, G. (1996) Diffusion tensor MR imaging of the human brain. Radiology 201:637-648.
Pierpaoli, C. and Basser, P.J. (1996) Toward a quantitative assessment of diffusion anisotropy. Magn Reson Med. 36:893-906.
| 1995 |
Basser, P.J. (1995) Inferring microstructural features and the physiological state of tissue from diffusion weighted images. NMR Biomed. 8:333-344.
Basser, P.J., Mattiello, J., and Le Bihan, D. (1995) Anisotropic diffusion: MR diffusion tensor imaging. In D. Le Bihan (Ed.), Diffusion and perfusion magnetic resonance imaging. (pp. 140-149). New York: Raven Press, Ltd.
George, M.S., Wassermann, E.M., Williams, W.A., Callahan, A., Ketter, T.A., Basser, P.J., Hallett, M., and Post, R.M. (1995) Daily repetitive transcranial magnetic stimulation (rTMS) improves mood in depression. NeuroReport 6:1853-1856.
Le Bihan, D. and Basser, P.J. (1995) Molecular diffusion and nuclear magnetic resonance. In D. Le Bihan (Ed.), Diffusion and perfusion magnetic resonance imaging. (pp. 5-17). New York: Raven Press, Ltd.
Mattiello, J., Basser, P.J., and Le Bihan, D. (1995) Analytical calculation of the b matrix in diffusion imaging. In D. Le Bihan (Ed.), Diffusion and perfusion magnetic resonance imaging. (pp. 77-99). New York: Raven Press, Ltd.
| 1994 |
Basser, P.J. (1994) Focal magnetic stimulation of an axon. IEEE Transactions on Biomedical Engineering 41:601–606.
Basser, P.J., Mattiello, J., and LeBihan, D. (1994) Estimation of the effective self-diffusion tensor from the NMR spin echo. J Magn Reson B 103:247-254.
Basser, P.J., Mattiello, J., and LeBihan, D. (1994) MR diffusion tensor spectroscopy and imaging. Biophysical Journal 66:259-267.
Mattiello, J., Basser, P.J., and LeBihan, D. (1994) Analytical expressions for the b matrix in NMR diffusion imaging and spectroscopy. J Magn Reson A 108:131-141.
Roth, B.J., Basser, P.J., and Wikswo, J.P. (1994) A theoretical model for magneto-acoustic imaging of bioelectric currents. IEEE Trans. Bio. Med. Eng. 41:723-728.
| 1993 |
Basser, P.J. (1993) Cable equation for a myelinated axon derived from its microstructure. Med. & Biol. Comput. 31:S87-S92.
Basser, P.J. and Grodzinsky, A.J. (1993) The Donnan model derived from microstructure. Biophysical Chemistry 46:57-68.
| 1992 |
Basser, P.J., Wijesinghe, R.S., and Roth, B.J. (1992) The activating function for magnetic stimulation derived from a three-dimensional volume conductor model. IEEE Transactions on Biomedical Engineering 39: 1207–1211.
Basser, P.J. (1992) Interstitial pressure, volume, and flow during infusion into brain tissue. Microvascular Research 44:143-165.
| 1991 |
Basser, P.J. and Roth, B.J. (1991) Stimulation of a myelinated nerve axon by electromagnetic induction. Med. & Biol. Eng. & Comput. 29:261-268.
| 1990 |
Roth B.J. and Basser, P.J. (1990) A model of the stimulation of a nerve fiber by electromagnetic induction. IEEE Trans. Bio. Med. Eng. 37:588-597.
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Peter J. Basser, Ph.D.
NIH
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