Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
To curate selected conserved sequences in both forward and reverse orientations:

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Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  C.elegans egl-46 locus Genomic EvoPrint
    (Back to Top)
	
    
  
  
      Black capital letters represent bases in the C.elegans egl-46 locus reference sequence that are conserved in the C.remanei, C.brenneri  and C.briggsae orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 5' --> 3' direction)


 tcagcaataaatattttgaaaataatgacattcaaaaaaagttgacaatagttcgtttttttaattcaaattaat
ggcatggttcggtaacaattgaaaaatttctgcaaaagggtttgtatcatattgcaaaaattttccgaaggtcct
tattcaaagcaaaattttagaagaagtaagtagctagcgtagtttgagtagccagtaaccagtagccagtggaga
aatttatgaaagccactcccgtggtgccaaaatgaccaaatatcatagtaaaacatattttttgaaaattttatt
ttgttcaaaaagtggtaatttattactcagtttttgccactttttcggaatattgaaaacattttaaatgcaaaa
ctttcacctttcaatgtcatctttgtaggataaaacactatctttcaggcaaacatccttgctctttgtgtgttt
actgacaaaccagcggaatatacaatggcagatgctaatgaaaaaactgtcaaatatgaggtgaacgctgaggag
ccttgatgatttttgccagaaatgttacgctcaatttcattttgttttacttctattgatcgcaagttgtcccat
ttctacatttattctttaatctgtcatctcattgttgtcctatttcagagtcaattttcagactcaaaccatcct
gaatttcacttaattcccaactgattacgtgtatctactgcccgttTGTTccctactgcaTTCCaaTTTTtgCAA
TGAACACATTATTGGTTcGAGCACATCTCTCTTGAtGCATAAACGtGTCCATCTGCCCgTTCGGCCACTAAAACA
TCTGCTTTTCGACTCctagtgcctttcgtacccgctCAATTCaCCATACCATGAcATTTGCATGTCTTctcTTcT
CTTTTcATTtTactcccCCCTcTCATTTggacAtTCGGacACACTACCACAAACTGTCcCTcTCTaTtGAAATGC
GgCAAGCACAGGAAAcAcGgTCgTAAAAaagcatagacgctctgcgaaagctatgaacacatacatatcttcgag
tcatttgaacgttcatggtgctttcgcaaattatatagaaatttatgggttatgggaaaggagtacttgtaaaat
agtgaagaattatcttaaacaagacacaaaaactagaaataaggagcatgtttaaagtgttaaaaatcagcttgg
ggaacaattttcgacagtcatatacactagatactgatagtaggataactttcattatattttcagagtcatccg
aaatgcgatctcggggatctgcaaaaaaatcttggccgtcttggttgcattcagatttatataaatttattaata
aacaatttttctcaacttgatgttatcattactctgaaaattgtgcaatgagctggaagaattgggaaagctgaa
acaaaaaaatcttaaaattttcatcatttgttgtctgaaactgttgcggtttccaagtcgaacttttcaaaccac
acaacttcctataaagtacccaaaagtcgtcaccctatagtactttcaaacttacaaatttcagttacccttaca
tgaaatgtgatatttttatccattcccaaatgagctcaacaccggaagttttgtcattatacaatgtctgaccca
gtttgtCCGGTCAttcatccacgtattACGAACACCTGtCctccattgctccAATgtGTATCAGTCTCGTgTgTt
TGACCCATAACAcGtCCACTTATCCtTagcCCACTTAATTACCTCACCATAATACCAATgCAtGgCACCAatgaa
ttggattgtaattacacgagagaGGCATTtAGTTTCGCGCACTGTtcggccggccgGAGCAGGTGGcgtcTTCCA
ATGACCCGGTCAcaCTTATCCtTTCCAGaTGTTTTCCTTCCGTTTttGGTCaccccttcagtcttctcactattg
aaatccgccttcggaacgttcgcctctcggatttggcattaaatggcagctcagttcacgccagatgcaAGAtgA
AAtGAAAAGtgcgcgagacgtcggtcggacatagttCTTTAATCCgaACTAATTggttgatggtatctatctaca
ccttgtgaaagggtactttattagatttgagaaTTATGAAATTtgtgtcttcaATGAacaaaagattcaggaata
cacggggaagccgattttggtgtgaattcgatgggaggttgaatggtaacaagattaagatttgaagaacattgt
ttgcaaaatgcgtgattcaagatttgaaatttgaatatttcctttactgtgatttttgaaatttcgacaagaccg
aaaaaaaatgtaaaggtgtactgtagtgtcattatagctcaatatagaatctaggtcattttgaggtgagaatct
caatctgaaacccaggagtgtaaaacttcattatctgttttcccaaacgctgagtttacaatcaaactcaccgcc
cttattggtaaatttctaccgttcccgagctaatttaaaatcaccgaacgtattcccttgttcaattcaatacta
taAAATTCaatccCAACAgAAggtagtggTGATGttTACCaGACAGgttGTTGggggcgacaTGTAACAATATTA
TAAGCTAGAACATGTCACCCATATATCTCGGTgCCaATTTtGTCATCTATTATTCATTGTTTGTCTcCccGGGTA
CGcATGTatgtGTGtCAGCAGGTCCctctctacccaaAAGCTCTTCAATgCACAAACACACCTctaTTCCaGAGG
ATTTTTGATTGACACTTCATTTCGGTGCTCTCgGTGCTCTcAAATGCATTtAAAATCgggAAATCGTgtTGcAGa
TTGTTGTTTACtTctttactcactttaTCTTctaacacgcttTGATcCCCaTGGGttTACcGTAATTGGAtGGat
gaaaaGATTGACCCGgacaagccgggacaggaGCATCTGCtcccaccTCggaTAacCCtcacttttcgcagtcCT
AATTGGCAtGTTACaaAtTCtCGAACAGGTGTcGATTtccgtgaggaggcggaagatgaacgatgatgggtacca
ggacccatCGATTTGTTATttTTGtGACGACAGACccaaCGACAGATGCAAGTAGTACAGTATATGCAAATCGAA
ATGATAcGGcTgTTTGcCaAGGGcAcGTACAGATGGtctGCCtGCTGCAtGGGcacaacatctagaCTGATTGAT
TATCTtTTAGGTATTCAcgAACATGCGACTAATTGGgCcATAagcatgCAGCTGACAGACGGTAgatgAATtAAT
GTtgcggacttttaggtaataaattactgataaatataccctcagcttgagataaattattttggatatagggct
agctcttgcaactttgtatattctcacaataatattccaaatgtggccaaaattgaggtctctaggtagtacatt
tatcgtcgtacagtttgattttctgtacagattaaaaatttaaccacgattcaaactcaaactatttcgtatgct
tctgctcaatgctaagataactgattatggcattcacaacacaatgcacatattccctcacttcagtctttgctc
aaattcaactttgcgaggcacccatcaaaaaacctgttcatcaaagagtcccatcatctcgccaaacgtttccat
agcaacaaaTCGGAACACtaAACGCGcgCCTGGCACgGTCACtgTCGGTGTCATCaaCCCAtggcactgcgttcc
tttttTAATGcACTgcTCACTTTtTAATTTATGCTCaTCTTCTCTTccgtgAGCACTTCtAAACgCGGcTCGTCC
CAAGAGACACCAGGAGACACCTGCCCgtgttgctaccaaatatggaAAAGtGATTGACTtggAAgAGgagatgTG
CtACAAGTGGTAAACAATTTGGGCGATTGAAaGtataaaagaaagagGAGgtGgAATaaacgtccgcTAATTGAC
GCCTTCtTATTACGcGtGGAaTTAtACAAcTgTTCGtAACACaTATTGTTCgcCAATTAGGcGAGtACACCTGGT
TTAcaggcaaaataagatttatgggagcaaggataattgtagatcataaaaatacataccgttataaaattactg
atatttgtatcaaatatatttgtacagacttatagactctttagattctttccagtgattctctgaatttaaaat
attatttttgcggcagtggggaaattgttaaaaaccactcttatggtgccaaaattagcagatattatagtgcaa
cttttcaatttttttttgttgtttttttcactttttggaagtcgtcgatcaaaaacaattataccttcgaatttt
atagtttacttatgtttaaaattaatatttatcaagcactgagaggaattcgaacatgcggcattgctatagttt
tctcgaaaagtggcaaaaacttagtaattgccacttttcaaatgccaataaaaatttcattgataaaatctcaat
ccaaagaatttctgtggaaggaaaaattcaacagtgaacacaaataaaatttcacaataggttacgaaatgccca
atttcaagctattgagaattcatcagttgttttactgagattttccctttttcttctatccctcaaaagttacac
aactcaaaaatcgaatttctagatttcgtcactcatctatcaaatttacccattgacaatctttatttttgacga
aaaaaacattgaaatttccaatttcAcAAAATCTCGACCCAATTTCcATGTTAATTGCTCaCTCgctcccCTTCt
TGtaAGGTGTCTTCgGGGCGGAGACTCGGGAGCAGCAGCTGCCAGCcttGTGCCTtcTccCaTATAAAAGGAGGT
TAGTGTGTACgTGCCACGGTCAATTGAGGacaccagacggtcagagtcagacaccttttctttTTTCgttcacaT
CtACCGTAACCcataTCTTtTTTCgatccattttatatcgttttgaTTtCAGAaGGCCATGGTGCCTaTgaatGA
CTTTTGGGTCAAAGCAATAtTATCaTCgACgAATCCgAGTCCaGTgCCgTCtACaACATCtAccgtatcCAATGA
TGAAAatTTGGAtAAAacgTTgGActttGAcTGtTCcACgCAAACagtgttccctacacttCCAATGTTCTGGAA
CCcaacgctaGTtCAaCAGATGcTtGCgcTcTaccagATcCAGCAgCAGCAaaTtCAGTTCagcgcgaagctggc
acctcaaccggttagtgataggtgtgtcttatctagacattgataccttttttcttaattgaaagatcaaaaatt
tataccaacttctacctgttctactgatgactataggggaatgtgattttcactgcaaataaggcgatcatagta
ttcataataagttctccagatcacttgacactattatgttcttgaggtatctaaaaatgtgttctaaaaaattgt
tttcagcttttccaagaaccgaccatccaaaaagagtttctcccattcccccatcaatctcgaaaacgtcctcta
ccgatagacccgaaaaagacaaagcttcgaaaactgaatgaagacactgtgACcAgTTCTCCaGTcAGcGGtATG
TTCATaAAGgtgagtaaagctatcggctctttctaagcttctccttctttcctctatgagcaaaaacaattcggc
aCCGATTgtctTAATTAGACGTGATTAGCATATGAGAGCTTTTGAAAacgaaggcacataagaggtgcCGGAAaG
CGGTGCGGCGCAGAAAAAAGAAGGAGCAAAAGCTTGGGTTAATTACCACCCGCTGACcaGCGACCGTCTGcCACT
TTTGTCtTGCGGCATtcTcTGACAACCGTCTCAgattgagcgctcGCTTGATTTAttGCtAaTGACACCGagaaa
acgaacggataaTaaTATTTTtgttgcaggaggaggcggatgtgaaatctgtggaggagctcCAaaAaGAAGCtG
AttTGctcGATGAgacagcagcatatgtagaggttggttagatttgtttaattgagattcaacaattaccggatt
caaattaacaaattccaagcatattgttTTCATTcCAGGTcACcGAgGAgTCaAGACAAAAGATtGAcGAGATtC
CaAatGTCATtGGAGACTGTATCTGCCGGCTGTGCAAGGTGAAATACGAgGAcGTgTTCAAGCTGGCACAACACA
AATGTCCAAGAATTGCtCAcGAGGAATACAAATGtCCgGATTGTGACAAGGTTTGTTgattcTTTGGATtATTgc
ttctgatcagaagttctagataacaggaagcaaatttacttcagactacaaaactttcaagaattctgatagatt
agtcatagaacccaaaaacgaaaggttgaatactatagtactcctatactcattactccCACCTGTCAAgctcat
ctaTATCACTTacttGAcTaCcCTTGTAtcgtcataagagtcagCAAAccaTCTTAATCCctctcgCCACTTGAC
aAaACAGTAATCCagTGCTcTTcaCGAGTCgGgtTcCCTTggctTtTTCTaTTTATCGACACCCCCTGCTGcGaG
cCGGCtTCTTTCAgTaCCAACCAGCTGgtccatgattctcagctttctctctccctctatctgttctttacaaaC
AAACacacaatttgctccaTTTTTGCAGGTGTTCTCaTGTCCGGCCAATTTGGCaTCaCAtCGTCGTTGGCAcaa
acCcCGTAATGAgctcggtggcTCTCCaCCcgcacaatcctcaacaaTtGTCTCCTGctCCACCTGCTTCAaCTC
aTTTCCaacaAAgAAGATGCTCAAgctgcACTCgtcgacgTGTCAAaGATCgCCtCTTCAgGATtTgCTCTCAAG
AGTtAttCCaACaATGTAATcacacttttcgactacctaactctttacaATTtccCCCGGTCAACCaACTATCCA
CtgtaTaTCTcCCGAGTTGACCTCattTCTttatccttTTTTGGCTTTCCaaaTGATCTCccattttatatacct
aatagtctatttTTcTGATCTTGTCActGATCtCcTTttccaaatTGCTGAGTGAATTCTAGTCaTGCCATAAga
tttttttTGCGTCATTTCGCAGTATTATtttgaatatCCGCAGTtcAaGCATTTatcaaGTACTTCacatACATT
CCagagcgtcgcctcactgtatttttttttGCTGAAAGTGAaTCTAGTCAaTttTCaccttttcattttttcttt
gtttgtttttgtgtgttttctccatttaagttttctggctttttttagttaatcagaaaatgttccttcaacttg
tattctaatatttatccaattttccatgttaacctcccccTcTCcAGCtGTACaATGTGATCTCTctagtcttgg
tggtttctttgcaaactGtACCgttacttaataaacactatattattcaataaatttttattgaatcttcaagca
tcataatgaaacaaatatgtctTcAaAttTTCTTTCCatAtACattttgttggaatgatttgttcTTCTTTcgga
tctcTTCCAAgAAtTTCCAtcTTCCaCCaCtgaAcTCaTCctCCATTcCgctgtttGGaTAaCTGATgCgatAAT
GTCTTCCaGGACGggccgGATCgaacTTtTCCCATgcactgGAgCCagtttcatTTGGATTTCCgTAtTTGGCAA
AGTTagcgAacattGTTGTgAatTtgtcaagcatcTTgagtTcttctTccgtTgGcTcaaAcTTgctgattattc
cgtcacCgaAcagataccgaagctccattccgtgcgttggttctggaacaaaaacacatttagtcattgttgaaa
agttctagtacctacctatgtatggcagataacccttgagtggagcgAAtCCATccGGaTTgCAgtAATCgAAat
TaTAgAgCCAaACtTCgTCcCCgTgcTcTGCgGCatTctgAGCaGTTGCacgaactcctgtatggaaaAtgGAgT
CtCCaACaaAtTCtGCAGcTtttctcattatggcttcttcatctccttcagaAATATttTTtGTGTAgTAtTCgA
AAATTTCtTtacgaattccttcaacatcatctacgacgtcttctttgtaatcttcttctatcttcaatctcaaaa
gatccgtgtaatctttgtatggcgtattgcggtcgaatgctgaaagaatttgaaataaaccataaatattaaaat
tataatttcgctcttaccaaacagAAgccCCTCGTtcccaactATTCCgGTCATCAaaaTccgtTTtGAaGCaTC
TTTTCTcAacTCATCCAatGGTTTcGGGAAGAAATCCCcaTcgtAATTGGggcacaaGCTCATgaAtCCagactg
tttatatgtatatcctgtttttccagtaattttatcacatggcaggcttctcatgaattctagtctttcttttga
tcctacaacatttttgttagaataatatttgcaagtcagtcaattagaaatttacctgatcctgtaaaacctagc
ctggccagaatatcaTCAAAaACgtgTGCtTcATTTTCtGCAGtaCGCATTGCAAACTCACAcAtcGCtgaTCCg
GACATcGGAACcACTTTTtGGAAaAgATCTaAATAAatataattttttatcataatttctatagttatgtcacct
cTAGAATGcGGACTCAACGtgAgaAgATCtACgCaagCTCCaCCTGCACTcTGcCCAAAAAgtGTgACATTATtT
GGGTCcCCTCCgAATGAgGCAATaTGTTTTTGAACCCATTgtAAAGCgAgaGTTTGATCCCATAATCCAAAGTTT
CCaGGACAAACTTCATCTCCgGTAGTaAAGAATCCAAGAATtCCAAggCGATAATTCAtaGTGACaAgGATAACA
TCTTTcAttGGAAGagtgctagaataataaaatgagaaaatttaaattaaaaaacagaataaattcgatcacgaa
ccttgaaatagaataatcacaaaattctctggatgaagaaatttcaaatccaccaccgtgcacatATACCATcAC
tGGgcgcgcatttttcttaatcaaaaaattgatttagaaaaatatgtgttcataaaacttacatattcactggac
tcccatcccggaacaaaaacatttacagacagcccatttgcctcatcaggctcatctggattcacgaacattcct
ttttcgagtccttgcccagaaggtgggcatctgggaccatatttagtacagtctctagtttctgtccagtcatcc
gcggggactggttttgcaaatcgcatttcgcccgttggaggcttggcgtatggcattcctaagtatccatgaacc
tctttgtctccctggaaggttgaaaattaatagctatcactctgatatacatccattgttaatggaggaatatcg
ttttcgggggttttttgatattattttctcctaaattccaaattttatgatgagatttgtttttaattctcaaaa
aacattcatattttatggcggctcaaatttcaaacacaaggcctaattaagctaaaatctggaattttacccgtt
gactaaaaaagtaccgtaacgttcggttgtttagaaaataaaaataccattaactatactccctctttgaaaaaa
aaatttacatgacgatagaggtttcctagaacaggcccgcaggaagtattgagaaccgttccaagtggttcaggc
ttcaaatatgaaagatatcctcccattctgaaaacttcgtttttctgttcatagaaaaaaaaagaagaaacaaaa
taggcatgtaccagaaatctattgataacaaataagcgatagtaaccatatcttatcaagttttcaagctctgta
gttttgtaaaaaaattcaaagccattaaaatcaataaaaatactagaattaatcaacttgtttttttttaaactt
ttcggactctggaaaacaaggaacaaaactatccaaaaataaaagtgaaaaaaaaaactgatttttcaatcaaat
gtctattctttaccctctatatctcctctatttatttgttgtctctcatcttttgccaaacattgtgtaatcgct
tcctcctcagacaacactctatttctctttcgccccgcctttttgtagtttattgacacaaaatgggtcacaaat
tttcaaaacacgagaggagagattaaaatacagagagaatagttagtagttattttttcccgtagaaaatgtgct
gataacgcttgctttgctcttgtatttgtttcaaaaattggcagcggttttcttgaaaactgtctttcatttcac
tgtcagttgaatcaatgtgaaaatgtcgacttccttcggtgtaagtttcccagtttgtcacgccgggtatattag
gatttctgaataaataaacatattttctgttagaaacaattgaaaaatacccatattttgcaaaattagtgaaca
tagtagtcatatattccatcattttcaaatctttttcatttgcatcaaatttgctgtacactccttcaccaataa
tgtaacgtagttcactgcaatgtgcagcacctaaaacatttcaaaaagtttgaaaacggaaaactttgaaaacgg
aaacctttaaatggcacaatgctcccaacaggtccaaaaccatctgggttccagaaatcgaatacatagaaatac
acacagttcccagctcgagctaaactttcggcagacagtagaactccagcgttgtacacagaatgtccaatgtac
taaaataagatatcaaatacttattagtgaaaaaagctggagtttcctttaagcttacatcaacaagttttcttt
cctccgattcatcacagtaatttgtgtaaaaattcattatatttttctgcacattttctggattttctactacgt
cacctctgtattcggattcaactcgtcttttaaaattttcttcacaagttgtaaaatctccgtctgcaaatgctg
aaaactatcttaattatttaaagtaattattttgaaattgaacctgtaataaggccttcgtcttccatcattcca
acaatgaccggcttttttcgagtttctcgccgaagttcttcaagtggttttgggaagaagtcaccgtccaaattt
ggtgcaaacgatagatctatagaaacggtatgtttcaatcccgtcttctctaatagtttctcgataggtaggttt
tcaaaaaactccaggagttccgctgaacctaaaaacacaatttattctcaaaactggtcagatcaaaaatacctg
acccggaaaaccctctgcttctagcatattccatgcaaacaagcgcttgattttcttcagttcgaattgcaaatg
gaacatgagcacttccggacataattatcaatttatgaaataaatctgaagtaataaatctattttggatttaag
tattcatacttgcctctagaataagggcttaaattgagcaaatctgcacaaactgctccagcactctgtccaaaa
agagtcacgttcttcgggtctccaccaaaagaagaaatatgcgtggagacccatttcagagccaaagtaagatcc
catagtccaaagtttccacgacaggaatcatctcctgtagtaaggaatccgagagcgccgacccgataattcaca
gttacgacaatgacatctttcagtggaagagttctgaaaaaatatgaatcccatacttttactccaataaattat
tctacccagaaagagaataatcacaatagtctttggatgcactaagctcgaaaccaccaccgtgaatgaaaatca
taactggatgttttgcctgaaatgttatattttctcctcaactcagttgtaaaagtgcccaccgattgcttaatt
tcccactgaggacaaaacacattcaaactcaaacagtttgcttcatctggaatgtctgtattcggcagttggaga
ttctcatagagcattccag
  
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egl-46 locus Genomic Evodifferences Profile - Relaxed EvoPrint

 (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.remanei, C.brenneri or C.briggsae.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

tcagcaataaatattttgaaaataatgacattcaaaaaaagttgacaatagttcgtttttttaattcaaattaat
ggcatggttcggtaacaattgaaaaatttctgcaaaagggtttgtatcatattgcaaaaattttccgaaggtcct
tattcaaagcaaaattttagaagaagtaagtagctagcgtagtttgagtagccagtaaccagtagccagtggaga
aatttatgaaagccactcccgtggtgccaaaatgaccaaatatcatagtaaaacatattttttgaaaattttatt
ttgttcaaaaagtggtaatttattactcagtttttgccactttttcggaatattgaaaacattttaaatgcaaaa
ctttcacctttcaatgtcatctttgtaggataaaacactatctttcaggcaaacatcCTtGCTCTttgtGTgTTt
actgacaaaccagcgGAaTAtACaATGGCAGAtGCtaATGAaaAaACtgTCAAATATGAggtgaacgctgaggag
ccttgatgatttttgccagaaatgttacgctcaatttcattttgttttacttctattgatcgcaagttgtcccat
ttctacatttattctttaatctgtcatctcattgttgtcctatttcagagtcaattttcagactcaaaccatcct
gaatttcacttaattcCCAACTGATTACGtGTATctACTGcCcgTTTGTTcCCTactgcaTTCCaaTTTTTgCAA
TGAACACATTATTGGTTCGAGCACATCTCTCTTGAtGCATAAACGTGTCCATCTGCCCGTTCGGCCACTAAAACA
TCTGCTTTTCGACTCctagtgcctttcgtaccCGCTCAATTCaCCATACCATGACATTTGCATGTCTTCTCTTCT
CTTTTcATTTTACTcCCCCCTcTCATTTggacAtTCGGACACACTACCACAAACTGTCcCTcTCTaTtGAAATGC
GGCAAGCACAGGAAAcACGgTCGTAAAAAagcatagacgctctgcgaaagctatgaacacatacatatcttcgag
tcatttgaacgttcatggtgctttcgcaaattatatagaaatttatgggttatgggaaaggagtacttgtaaaat
agtgaagaattatcttaaacaagacacaaaaactagaaataaggagcatgtttaaagtgttaaaaatcagcttgg
ggaacaattttcgacagtcatatacactagatactgatagtaggataactttcattatattttcagagtcatccg
aaatgcgatctcggggatctgcaaaaaaatcttggccgtcttggttgcattcagatttatataaatttattaata
aacaatttttctcaacttgatgttatcattactctgaaaattgtgcaatgagctggaagaattgggaaagctgaa
acaaaaaaatcttaaaattttcatcatttgttgtctgaaactgttgcggtttccaagtcgaacttttcaaaccac
acaacttcctataaagtacccaaaagtcgtcaccctatagtactttcaaacttacaaatttcagttacccttaca
tgaaatgtgatatttttatccattcccaaatgagctcaacaccggaagttttgtcattatacaatgtcTGACCCA
gTTTGTCCGGTCATTCATCCACgTAttACGAACACCTGTCCTCcattgctcCAATGTGTATCAGTCTCGTGTGTT
TGACCCATAACAcGtCCACTTATCCtTaGcCCACTTAATTACCTCACCATAATACCAATGCAtGGCACCAatgAa
ttggattgTAATTAcACgAgAgaGGCATTtAGTTTCGCGCACTGTtcggccggccgGAGCAGGTGGCgtCTTCCA
ATGACCCGGTCACACTTATCCtTTCCAGaTGTTTTCCTTCCGTTTttGGTCaCCCcttcagtcttctcactattg
AAATCcgCCttcggaacgttcgcctctcGGATTTGGcattaaaTGgCAGCTCagttcacgccagatgcaAGATGA
AAtGAAAAGTGCGCGAGAcgtcggtcggacatagttCTTTAATCCGaACTAATTGGttgatggTATCtatctaca
ccttgtgaaagggtACTTTATTagatttgagaATTATGAAATTtgTGTCttCAATGAACAAaagattcaggaata
cacggggaagccgattttggtgtgaattcgatgggaggttgaatggtaacaagattaagatttgaagaacattgt
ttgcaaaatgcgtgattcaagatttgaaatttgaatatttcctttactgtgatttttgaaatttcgacaagaccg
aaaaaaaatgtaaaggtgtactgtagtgtcattatagctcaatatagaatctaggtcattttgaggtgagaatct
caatctgaaacccaggagtgtaaaacttcattatctgttttcccaaacgctgagtttacaatcaaactcaccgcc
cttattggtaaatttctaccgttcccgagctaatttaaaatcaccgaacgtattcccttgttcaattcaatacTa
taAAATTCaatccCAACAGAAGGTagtGGTGATGtTTACCaGACAGGTTGTTGggGGCGacaTGTAACAATATTA
TAAGCTAGAACATGTCACCCATATATCTCGGTgCCaATTTtGTCATCTATTATTCATTGTTTGTCTCCCCGGGTA
CGCATGTATGTGTGtCAGCAGGTCCCtctctacccaaAAGCTCTTCAATGCACAAACACACCTCTaTTCCaGAGG
ATTTTTGATTGACACTTCATTTCGGTGCTCTCgGTGCTCTCAAATGCATTTAAAATCgggAAATCGTgTTGCAGA
TTGTTGTTTACTTCtttactCACTTTaTCTTCTaacaCgCTTTGATcCCCATGGGtTTACcGTAATTGGATGGat
gaaaaGATTGACCCGgacaagccGGGacaGGAGCATCTGCTCCCacCTCGgATAAcCCTcACTTTTCgCAGTcCT
AATTGGCAtGTTACaaATTCTCGAACAGGTGTCGATTTCcgtgaggaggcggaagatgaacgatgatgggtacca
ggACCCATCGATTTGTTATTtTTGTGACGACAGACcCAACGACAGATGCAAGTAGTACAGTATATGCAAATCGAA
ATGATACGGcTGTTTGCCAAGGGcACGTACAGATGGTCTGCCTGCTGCATGGGCACaACATctaGACTGATTGAT
TATCTtTTAGGTATTCAcgAACATGCGACTAATTGGGCcATAAGCAtGCAGCTGACAGACGGTAgATGAATtAAT
GTtgcggacttttaggtaataaattactgataaatataccctcagcttgagataaattattttggatatagggct
agctcttgcaactttgtatattctcacaataatattccaaatgtggccaaaattgaggtctctaggtagtacatt
tatcgtcgtacagtttgattttctgtacagattaaaaatttaaccacgattcaaactcaaactatttcgtatgct
tctgctcaatgctaagataactgattatggcattcacaacacaatgcacatattccctcacttcagtctttgctc
aaattcaactttgcgaggcacccatcaaaaaacctgttcatcaaagagtcccatcatctcgccaaacgtttccat
agcaACAAATCGGAACACtaAACGCGCGCCTGGCACgGTCACTgTCGGTGTCATCaaCCCATGGCactgcGTtCC
tttttTAATGcACTgcTCACTTTTTAATTTATGCTCaTCTTCTCTTCcgtgAGCACTTCtAAACGCGGCTCGTCC
CAAGAGACACCAGGAGACACCTGCCCgtGTTGCtACCaAATAtgGaAAAGTGATTGACTtggAAGAGGAGatgTG
CtACAAGTGGTAAACAATTTGGGCGATTGAAAGtatAaAAGAAAGAgGAGGTGGAATaAACGTCcgCTAATTGAC
GCCTTCtTATTACGcGTGGAATTATACAAcTGTTCGTAACACaTATTGTTCgcCAATTAGGcGAGTACACCTGGT
TTACAGGcAAAATaAGATTTATGggagcaaggataattgtagatcataaaaatacataccgttataaaattactg
atatttgtatcaaatatatttgtacagacttatagactctttagattctttccagtgattctctgaatttaaaat
attatttttgcggcagtggggaaattgttaaaaaccactcttatggtgccaaaattagcagatattatagtgcaa
cttttcaatttttttttgttgtttttttcactttttggaagtcgtcgatcaaaaacaattataccttcgaatttt
atagtttacttatgtttaaaattaatatttatcaagcactgagaggaattcgaacatgcggcattgctatagttt
tctcgaaaagtggcaaaaacttagtaattgccacttttcaaatgccaataaaaatttcattgataaaatctcaat
ccaaagaatttctgtggaaggaaaaattcaacagtgaacacaaataaaatttcacaataggttacgaaatgccca
atttcaagctattgagaattcatcagttgttttactgagattttccctttttcttctatccctcaaaagttacac
aactcaaaaatcgaatttctagatttcgtcactcatctatcaaatttacccattgacaatctttatttttgacga
aaaaaacattgaaatTTCCAAtttcACAAAATCTCGACCCAATTTCcATGTTAATTGCTCaCTCGCTCCCCTTCT
TGTaAGGTGTCTTCGGGGCGGAGACTCGGGAGCAGCAGCTGCCAGCCTtGTGCCTTCTCcCATATAAAAGGAGGT
TAGTGTGTACGTGCCACGGTCAATTGAGGaCACCAGACGGTCaGAGTCAgACACctTTTcttTTTTCgTTCaCAT
CTACCGTAACCCAtATCTTTTTTCgatccaTtTTatatcgttttgATTTCAGAAGGCCATGGTGCCTATGaatGA
CTTTTGGGTCAAAGCAATAtTATCaTCgACGAATCCGAGTCCAGTgCCgTCTACAACATCTACcgTaTCCAATGA
TGAAAatTTGGAtAAAacgTTgGAcTTtGAcTGTTCcACgCAAACagtgTTCcctaCAcTtCCAATGTTCTGGAA
CCcaacgctaGTTCAACAGATGcTtGCgcTCTAcCAgATCCAGCAGCAGCAAaTTCAGTTCAgcgcgaagctggc
acctcaaccggttagtgataggtgtgtcttatctagacattgataccttttttcttaattgaaagatcaaaaatt
tataccaacttctacctgttctactgatgactataggggaatgtgattttcactgcaaataaggcgatcatagta
ttcataataagttctccagatcacttgacactattatgttcttgaggtatctaaaaatgtgttctaaaaaattgt
tttcagcttttccaagaaccgaccatccaaaaagagtttctcccattcccccatcaatctcgaaaacgtcctcta
ccgataGAcCCgAAaAAgACaAAgcTtCGaAAaCTgaAtGAaGAcACtGTgACcAgTTCTCCAGTcAGCGGtATG
TTCATaAAGGTgagtaAAGCtatcggctctttctaagcttctcCTTCtTtcCTCTatgagcaaaaacaATtCGGc
ACCGATTgtcTTAATTAGACGTGATTAGCATATGAGAGCTTTTGAAAacgAAgGcACAtaagaggtgcCGGAAaG
CGGTGCGGCGCAGAAAAAAGAAGGAGCAAAAGCTTGGGTTAATTACCACCCGCTGACcaGCGACCGTCTGCCACT
TTTGTCTTGCGGCATTCTcTGACAACCGTCTCAgaTTGAgcGCTCGCTTGATTTATtGCTAATGACACCGAGAaa
acgaacGGATaATAATATTTTTGTTgCAGgAGGAGgcgGATGTGAAATctGTGGAGGAGCTCCAAAAAGAAGCTG
ATTTGctcGATGAGACAGCAGCATATGTaGAGGTtggttagatttgtttaattgagattcaacaattaccggatt
caaattaacaaattccaagcATATTGTTTTCATTCCAGGTcACcGAgGAGTCAAGACAAAAGATtGAcGAGATTC
CaAATGTCATTGGAGACTGTATCTGCCGGCTGTGCAAGGTGAAATACGAgGAcGTGTTCAAGCTGGCACAACACA
AATGTCCAAGAATTGCtCAcGAGGAATACAAATGTCCgGATTGTGACAAGGTTTGTTgattcTTTGGATtATTgc
ttctgatcagaagttctagataacaggaagcaaatttacttcagactacaaaactttcaagaattctgatagatt
agtcatagaacccaaaaacgaaaggttgaatactatagtactcctATACtcattactccCACCTGTCAAgctCAT
CtATATCACTTACtTGACTACCCTTGTAtCgTCATAagagtcagCAAACcaTCTTAATCCctctcgCCACTTGAC
AAAACAGTAATCCaGTGCTCTTCaCGAGTCGGgTTCCCTTGgCTTTTTCTaTTTATCGACACCCCCTGCTGcGAG
CCGGCTTCTTTCAgTACCAACCAGCTGGtCCATgaTTCTCAGCTTtctctctccctctatctgttctttaCAAAC
AAACACACAATTTGctccaTTTTTGCAGGTGTTCTCaTGTCCGGCCAATTTGGCATCACATCGTCGTTGGCACAA
ACCcCGTAATGAGcTcggtggCTCTCCACCcgCACAaTCCTCaACaATtGTCTCCTGctCCACCTGCTTCAACTC
aTTTCCaaCaAAGAAGATGCTCAAgcTGCACTCgtCgACGTGTCAAaGATCgCCtCTTCAgGATtTgCTCTCAAG
AGTtATTCCaACaATGTAATcacacttttcgactacctaactctttacaATTTCcCCCGGTCAACCAACTATCCA
CtgtaTATCTcCCGAGTTGACCTCaTTTCTTTatcctTTTTTGGCTTTCCaAaTGATCTCccaTTTTatataCCt
aatagtctatTTTTCTGATCTTGTCACtGATCTCCTTTTccaAATTGCTGAGTGAATTCTAGTCATGCCATAAGa
TTtttTTTGCGTCATTTCGCAGTATTATTTTgaatatCCGCAGTtCAaGCATTTatcaaGTACTTCacaTACATT
CCAGAGCGTCGcCTCAcTGtaTTTTTTTTTGCTGAAAGTGAaTCTAGTCAATTTTCACcTTTTcattttttcttt
gtttgtttttgtgtgttttctccatttaagttttctggctttttttagttaatcagaaaatgttccttcaacttg
tattctaatatttatccaattttccatgttaacctccCCCTCTCcAGCtGTACaATGTGATCTCTCTAGTCtTGG
TgGTTTCTttGcAAACTGtACCGTtacttaataaacactatattattcaataaatttttattgaatcttcaagca
tcataatgaaacaaatatgtcTTCAAATTTTCTTTCCaTAtACAtTttgTTGGAAtgATtTgTTCTTCTTTCgga
TCTCTTCCAAgAAtTTCCATCTTCCaCCACtgaAcTCATCcTCCATTCCGCtGTtTGGATAACTGATgCGatAAT
GTCTTCCAGGACGggccGGATCgaAcTTTTCCCATgcacTgGAGCCAGTTTCATTTGGATTTCCgTAtTTGGCAA
AGTTaGCGAACATtGTTGTgAAtTTGTCAAGCATCTTgAgTTCTTCTTCCGTTGGcTCaAACTTgCTGAttATTC
CgTCaCCgAAcAgaTAcCGAAGcTcCattccgtgcGTTGGTtCtgGaAcaAAAacacatttagtcattgttgaaa
agttctagtacctacctatgtatggcagataacccttgAgtGgAgcgAAtCCATCcGGATTgCAGTAATCgAAAT
TATAGAgCCAaACtTCgTCcCCgTGcTCTGCgGCATTCtgAGCaGTTGCacgaactCCtGTATGGAAaAtgGAgT
CTCCaACaAAtTCTGCAGCTtTTCtCATtatggctTCTtcaTCtccttcagaAATATtTTTTGTGTAGTAtTCgA
AAATTTCTTTaCGAATTCCTTCaACATCATCtACGACgTCTTCTTTGTAaTCTTCttCtatcttcaatctcaaaa
gatccgtgtaatctttgtatggcgtattgcggtcGAATGCTGaaagaatttgaaataaaccataaatattaaaat
tatAATttcgctcTTACCAAAcAGAAGccCCTCGTTcCcaactATTCCgGTCATCAAAaTCCgTTTTGAaGCATC
TTTTCTCAACTCATCCAATGGTTTcGGGAAGAAATCCCCATCGTAATTGGggCACAaGCTCATgAATCCAGActg
tttataTGTAtatcctgtttttccagtaattttatcacatggcaggcttctcatgaattctagtctttcttttga
tcctacaacatttttgttagaataatatttgcaagtcagtcaattagaaatttacctgatcctgtaaaacctagc
cTgGccAgaATaTCATCAAAaACGTgTGCTTCATTTTCTGCAGTaCGCATTGCAAACTCACACAtcGCTGATCCg
GACATcGGAACCACTTTTTGGAAaAGATCTAAATAAatataattttttATCatAATTTCTATagtTATgTCACCT
CTAGAATGcGGACTCAACGTgAGaAGATCtACgCAAGCTCCACCTGCACTcTGCCCAAAAAGTGTgACATTATTT
GGGTCCCCTCCGAATGAgGCAATATGTTTTTGAACCCATTGtAAAGCgAGAGTTTGATCCCATAATCCAAAGTTT
CCAGGACAAACTTCATCTCCgGTAGTAAAGAATCCAAGAATTCCAAGgCGATAATTCAtAGTGACAAGGATAACA
TCTTTCATTGGAAGagtgctagaataataaaatgagaaaatttaaattaaaaaacagaataaattcgatcacgaa
ccttgaaatagaataaTCACAaAATTCTCTggatGAAGAaatttcAAATCCaccaCCGTGcACATATACCATCAC
TGGGCGcgcaTTTttcttaatcaaaaaattgatttagaaaaatatgtgttcataaaacttacatattcactggac
tcccatcccggaacaaaaacatttacagacagcccatttgcctcatcaggctcatctggattcacgaacattcct
ttttcgagtccttgcccagaaggtgggcatctgggaccatatttagtacagtctctagtttctgtccagtcatcc
gcggggactggttttgcaaatcgcatttcgcccgttggaggcttggcgtatggcattcctaagtatccatgaacc
tctttgtctccctggaaggttgaaaattaatagctatcactctgatatacatccattgttaatggaggaatatcg
ttttcgggggttttttgatattattttctcctaaattccaaattttatgatgagatttgtttttaattctcaaaa
aacattcatattttatggcggctcaaatttcaaacacaaggcctaattaagctaaaatctggaattttacccgtt
gactaaaaaagtaccgtaacgttcggttgtttagaaaataaaaataccattaactatactccctctttgaaaaaa
aaatttacatgacgatagaggtttcctagaacaggcccgcaggaagtattgagaaccgttccaagtggttcaggc
ttcaaatatgaaagatatcctcccattcTgAAAacttcgtttttctgttcatagaaaaaaaaagaagaaacaaaa
taggcatgtaccagaaatctattgataacaaataagcgatagtaaccatatcttatcaagttttcaagctctgta
gttttgtaaaaaaattcaaagccattaaaatcaataaaaatactagaattaatcaacttgtttttttttaaactt
ttcggactctggaaaacaaggaacaaaactatccaaaaataaaagtgaaaaaaaaaactgatttttcaatcaaat
gtctattctttaccctctatatctcctctatttatttgttgtctctcatcttTTGCCAAACaTTGTGTAATcgct
tcctcctcagacaacActCTATttctcTTTCGCCCCgCCTtTTTGTaGTTTATTGACACAaaatgGGTCACAAAT
TTtcAAAACAcgagaggagagattaaaatacagagagaatagttagtagttattttttcccgtagaaaatgtgct
gataacgcttgctttgctcttgtatttgtttcaaaaattggcagcggttttcttgaaaactgtctttcatttcac
tgtcagttgaatcaatgtgaaaatgtcgacttccttcggtgtaagtttcccagtttgtcacgccgggtatattag
gatttctgaataaataaacatattttctgttagaaacaattgaaAAATACCCATATTTTGCAAAATTaGTGAAca
taGTaGTCATaTAtTCCATCATtTtCAAATCTTtttcatttgcatcaaatttgctgtacactccttcaccaataa
tgtaacgtagttcactgcaatgtgcagcacctaaaacatttcaaaaagtttgaaaacggaaaactttgaaaacgg
aaacctttaaatggcacaatgctcccaacaggTCCAAAACCATCtgggttccagaaatcgaatacatagaaatac
acacagttcccagctcgagctaaactttcggcagacagtagaactccagcgttgtacacagaatgtccaatgtac
taaaataagatatcaaatacttattagtgaaaaaagctggagtttcctttaagcttacatcaacaagttttcttt
cctccgattcatcacagtaatttgtgtaaaaattcattatatttttctgcacattttctggattttctactacgt
cacctctgtattcggattcaactcgtcttttaaaattttcttcacaagttgtaaaatctccgtctgcaaatgctg
aaaactatcttaattatttaaagtaattattttgaaattgaacctgtaataaggccttcgtcttccatcattcca
acaatgaccggcttttttcgagtttctcgccgaagttcttcaagtGGTTTTGGGAAGAAgTCaccgtccaaattt
ggtgcaaacgatagatctatagaaacggtatgtttcaatcccgtcttctctaatagtttctcgataggtaggttt
tcaaaaaactccaggagttccgctgaacctaaaaacacaatttattctcaaaactggtcagatcaaaaatacctg
acccggaaaaccctctgcttctagcatattccatgcaaacaagcgCTTGATTTTcttcAGTTCGAATTGCAAAtG
GAACATGAGCACTtCCgGACATaATTATcaatttatgaaataaatctgaagtaataaatctattttggatttaag
tattcatacttgcctctagaataagggcttaaattgagcaaatctgcacaaaCTGCTCCaGCACTCTGTCCaAaA
AgaGTCACgttcttcgGGTCTCCaCCAaaagAAgaaatatgcgtggagACCCATTTcagagcCAAAGTAaGATCC
CAtAgtcCAaAGTTTCCacgacaggaaTcaTCTCCtgtAGTaaGGAATCCGAGAgcgccgacccgataattcaca
gttacgacaatgACATCTTTcAGTGGAAGAGTTCTGAAAAaatatgaatcccatacttttactccaataaattat
tctacccagaaagagaataatcacaatagtctttggatgcactaagctcgaaaccaccaccgtgaatgaaaatca
taactggatgttttgcctgaaatgttatattttctcctcaactcagttgtaaaagtgcccaccgattgcttaatt
tcccactgaggacaaaacacattcaaactcaaacagtttgcttcatctggaatgtctgtattcggcagttggaga
ttctcatagagcattccaga
  75
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1950
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2175
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2700
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3225
3300
3375
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3675
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4125
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4275
4350
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6375
6450
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6600
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7125
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7350
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7800
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8175
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9000
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9225
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9375
9450
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9600
9675
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9900
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10200
10275
10350
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10500
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11100
11175
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11400
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11700
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11850
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12000
12075

Enhanced BLAT Score Card

 (Back to Top)


 Nematode EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: egl-46 locus
        

     Reference Genome: C.elegans
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              C.elegans
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            12020
            1
            12020 0 380 
  
           
            394
            211
            4482 0 
                 0 /
                 14
               
  
           
            406
            211
            4483 0 
                 0 /
                 26
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.remanei
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            4833
            418
            11679 0 225 
  
           
            570
            8210
            9386 0 
                 78 /
                 180
               
  
           
            653
            8300
            11794 0 
                 183 /
                 158
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.brenneri
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            4131
            646
            10694 0 198 
  
           
            3675
            748
            10533 4 
                 372 /
                 3089
               
  
           
            274
            8585
            9075 0 
                 37 /
                 23
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.briggsae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            4013
            433
            12020 0 84 
  
           
            375
            8702
            11734 0 
                 195 /
                 31
               
  
           
            303
            4297
            11742 0 
                 100 /
                 54
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              P.pacificus
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            135
            4222
            10490 0  
  
           
            120
            3238
            10926 0 
                 102 /
                 18
               
  
           
            108
            7261
            9991 0 
                 108 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
C.elegans egl-46 locus Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the C.elegans egl-46 locus reference sequence that are conserved in the C.remanei, C.brenneri and C.briggsae orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

C.elegans egl-46 locus Genomic EvoPrint (Back to Top)

egl-46 locus Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.remanei, C.brenneri or C.briggsae.Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Enhanced BLAT Score Card (Back to Top)

Nematode EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile
