Program Description: |
The Vienna RNA packages consists of a few stand alone programs and a
library that you can link your own programs with. The package allows
you to
- predict minimum free energy secondary structures
- calculate the partition function for the ensemble of structures
- calculate suboptimal structures in given energy range
- predict melting curves
- search for sequences folding into a given structure
- compare secondary structures including pairwise alignment.
There is also a set of programs for analysing sequence and distance
data using split decomposition, statistical geometry, and cluster
methods.
The following executables are provided:
RNAfold predict secondary structures
RNAsubopt calulate suboptimal structures in a given energy
range
RNAeval evaluate energy for given sequence and structure
RNAheat calculate melting curves
RNAdistance compare secondary structures
RNApdist compare ensembles of secondary structures
RNAinverse find sequences folding into given structures
AnalyseSeqs analyse sequence data
AnalyseDists analyse distance matrices
RNAplot
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Documentation: |
Man pages are available at
/usr/local/fbscapp/ViennaRNA-1.4/man for the following
programs: AnalyseDists, RNAeval, RNAinverse, RNAsubopt,
AnalyseSeqs, RNAfold, RNApdist, RNAdistance, RNAheat, and
RNAplot.
To use the man pages:
man -M /usr/local/fbscapp/ViennaRNA-1.4/man RNAplot
or modiy you MANPTH environment by including
/usr/local/fbscapp/ViennaRNA-1.4/man in it.
The RNAlib library is documented in the files RNAlib.pdf,
RNAlib.info, and RNAlib.html located in the
/usr/local/fbscapp/ViennaRNA-1.4/man directory.
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