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LIGPLOT

4.0

Molecular Visualization

Andrew C Wallace & Roman A Laskowski. 

LIGPLOT is a program that automatically generates schematic 2D
representations of protein-ligand interactions. The input is a
standard PDB file and the output is a colour or black-and-white
PostScript file which gives a simple, at-a-glance representation of
the hydrogen bonds and hydrophobic contacts between protein and
ligand. The program is completely general and can be used to show
other interactions such as helix-helix interactions, protein-DNA
interactions, etc.

For more examples on using LIGPLOT see

/usr/local/fbscapp/ligplot/manual/examples/

Reference:

Wallace A C, Laskowski R A & Thornton J M (1995). LIGPLOT: A program
to generate schematic diagrams of protein-ligand interactions. Prot.
Eng., 8, 127-134.  

SGI 

/usr/local/fbscapp/ligplot/ 

setenv ligdir /usr/local/fbscapp/ligplot/bin
setenv hbdir /usr/local/fbscapp/ligplot/hbplus

alias ligplot $ligdir/ligplot.scr
alias ligonly $ligdir/ligonly.scr
alias dimplot $ligdir/dimplot.scr
alias dimonly $ligdir/dimonly.scr
alias hbplus  $hbdir/hbplus

For example:

ligplot  6TMN.pdb  CBZ 1 LEU 4 I

Note: In the above command p6tmn.pdb is the 
       pdb file. CBZ 1 and LEU 4 are the residue
       name and number of the ligand. The last entry
       being the chain-ID. 

/usr/local/fbscapp/ligplot/manual/index.html 

ravichas

2002-05-28

ravichas

2002-05-28