Cancer.gov
National Cancer Institute   The Director's Challenge    
 
NCICB Home home tools protocols reagents informatics organization dataSets

  Director's Challenge  >  Informatics :



What's New
Director's Challenge PI Meeting Agenda Nov 3-5, 2004

caWorkbench available for download!

caArray 1.2 release now available!

MAGE-OM API

DC Publications

Microarray News
MAGEML Standard

Gene Expression Specification (V1.0)

Related Links
BioConductor

R Project

Microarray Informatics at EBI

Whitehead Institute for Genome Research



Affymetrix file processing

The Gene Expression Data Portal is an on-going effort to provide database support and access to microarray data. Current and upcoming features are outlined in the Release Notes and Upcoming Features documents.

The effort also includes evaluating micoarray analysis tools and industry standards (e.g. MIAME, MAGEML, GO). Preliminary object and data models based upon the MAGEML standard have been developed. Components of the project are provided below.

Infrastructure Components
Detailed UML diagrams and use cases representing the object and data models for the GEDP. MAGE object model and MAGE APIs to GEDP data.
Industry Standards
A brief description and links to some of the industry standards upon which the Director's Challenge object and data models are based.
Data Sources
Information and links to microarray data sources (e.g.) affiliated with the GEDP project.
Project Members
Contact information for the GEDP team.
Analysis Tools
Evaluations of existing microarray tools.

Please send comments and suggestions to ncicb@pop.nci.nih.gov | Privacy Notice | Accessibility Information

cancer.gov nih.gov H H S logo - link to U. S. Department of Health and Human Services firstgov.gov