ABCC : Applications Web Page

Applications Web Page Welcome to the ABCC Accessible Application Web Page.

From this page, you can get information about our scientific applications and databases. To get more information about any topic, or to run an application, click on any of the menu items on the left-hand side. Program with a tag "Run" is runnable. This site continues to grow, so come back often to check out the many accessible applications available here at the Advanced Biomedical Computing Center (ABCC).

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You may get information like "Connection refused" while you are runing an application. Please check this link out and use the application later: Computer Upgrade News

Alignment Server
Clustalw
Clustal W is a general purpose multiple sequence alignment program for DNA or proteins.It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Evolutionary relationships can de seen via viewing Cladograms or Phylograms.
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T-COFFEE

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Clustal_W
Clustal W is a multiple sequence alignment tool. It uses sequence weighting, positions-specific gap penalties and weight matrix choice to improve the sensitivity of progressive multiple sequence alignment.
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ClustalX
Clustal X provides a window-based user interface to the ClustalW multiple alignment program.
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ESPript
ESPript generates a PostScript file of aligned sequences with graphical enhancements. Its main input is an ascii file of pre-aligned sequences. Optional files allow further rendering. The program calculates a similarity score for each residue of the aligned sequences. The output shows: Secondary Structures Aligned sequences Similarities Consensus Accessibility Hydropathy User-supplied markers Intermolecular contacts In addition, similarity score can be written in the bfactor column of a pdb file, to enable direct display of highly conserved areas.
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Jalview
Jalview is a multiple alignment editor written entirely in java.
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