Name: |
SIGNALP |
Version(s): |
3.0 |
Category: |
Protein Analysis, Sequence Analysis, Bioinformatics |
Author(s)/Vendor(s): |
Center for Biological Sequence Analysis
BioCentrum-DTU
Technical University of Denmark
Building 208
DK-2800 Lyngby DENMARK
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Program Description: |
SIGNALP predicts the presence and location of signal peptide cleavage
sites in amino acid sequences from different organisms: Gram-positive
bacteria, Gram-negative bacteria, and eukaryotes. The method incorporates a
prediction of cleavage sites and a signal peptide/non-signal peptide
prediction based on a combination of several artificial neural networks.
It also incorporates predictions done by a hidden Markov model specifically
designed to distinguish between signal peptides, non-secretory proteins, and
(for eukaryotes only) uncleaved signal anchors.
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Computer platform(s): |
SGI Irix
Linux-32bit |
Location: |
/usr/local/fbscapp/singalp-3.0 |
Access: |
Account at ABCC is required to use SIGNALP.
When using C-shell (and derivatives):
source /usr/local/fbscapp/signalp-3.0/signalp.login
When using Bourne shell (and derivatives):
. /usr/local/fbscapp/signalp-3.0/signalp.profile
After the above setup, just type:
signalp
with required arguments.
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Documentation: |
Unix man page is available: man signalp (after setting up your environment, see
the section "Access" below). |
Web Site: |
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ABCC Contact Person: |
Bob Stephens
bobs@ncifcrf.gov |
Created By: |
miaskiew |
Created Time: |
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Updated By: |
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Updated Time: |
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