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Volume 9 Suppl 2
The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge
Edited by Lynette Hirschman, Martin Krallinger, John Wilbur and Alfonso Valencia

Volume 9 Suppl 1
Also on BioMed Central
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The editor's selection of refereed research articles published recently in BMC Genomics and BMC Bioinformatics
Fish parasite genome fragmented
The important fish bacterial pathogen Aliivibrio salmonicida has a highly fragmented genome disrupted by many insertion sequence elements, and having lost function in several chitinase genes is restricted in the range of organisms it can infect.
BMC Genomics 2008, 9:616

SPRINT finishes stats quicker
A new interface, SPRINT, allows statistical analyses written in the R programming language to be run on high performance computing systems without the need for specialist programming to exploit parallel processors.
BMC Bioinformatics 2008, 9:558

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Bioinformatics and Genomics Gateway
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Faculty of 1000 Biology comprises well over 1,000 of the world's top scientists, who select and evaluate the most interesting articles published in the biological sciences, including Genomics and Genetics.
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Adsumo

 Welcome to Genome Biology
  Biology for the post-genomic era.

Research    
Locust small RNAs
Wei Y, Chen S, Yang P, Ma Z, Kang L / 16 January 2009

High-throughput sequencing of the small RNA transcriptome of locust reveals differences in post-transcriptional regulation between solitary and swarming phases and provides insights into the evolution of insect small RNAs.

Review   
Next-generation biomass feedstocks for biofuel production
Simmons BA, Loque D, Blanch HW / 29 December 2008

A review of the potential for biofuel production in the United States from timber and non-grain crops.

Research    
Streptomyces coelicolor microarrays
Bucca G, Laing E, Mersinias V, Allenby N, Hurd D, Holdstock J, Brenner V, Harrison M, Smith CP / 16 January 2009

Development of high-density microarrays for global analysis of gene expression and transcription factor binding in Streptomyces coelicolor suggests a novel role for HspR in stress adaptation.

Opinion   
Bioinformatics: alive and kicking
Stein LD / 17 December 2008

Bioinformatics is alive and well in 2008 concludes Lincoln Stein, despite his earlier prediction of its imminent demise.

Research    
The evolution of imprinting
Pask AJ, Papenfuss AT, Ager EI, McColl KA, Speed TP, Renfree MB / 02 January 2009

Comparisons between the platypus and eutherian mammalian genomes provides new insights into how epigenetic imprinting may have evolved in mammalian genomes.

Minireview   
Diatom genomes come of age
Vardi A, Thamatrakoln K, Bidle KD, Falkowski PG / 09 January 2009

Two genome sequences of diatoms, marine single-celled photosynthetic eukaryotes that often have ornate cell walls, give insights into their metabolic and signaling systems.

Research    
Alternative splicing regulatory network
Chen L, Zheng S / 09 January 2009

The identification of links between exons and their regulators or targets and between co-spliced exons in human, mouse and rat provides novel insights into the alternative splicing regulatory network.

The complete issue of Genome Biology Volume 9 Issue 12 is now available.

Comment   
Petsko GA / 09 January 2009
Research    
Balasubramanian S, Zheng D, Liu YJ, Fang G, Frankish A, Carriero N, Robilotto R, Cayting P, Gerstein M / 05 January 2009
Minireview   
Blow JJ, Ge X / 30 December 2008
Research    
Michielse CB, van Wijk R, Reijnen L, Cornelissen BJC, Rep M / 09 January 2009
Minireview   
Kiefer F, Adams RH / 29 December 2008
Method    
Liu Z, Wang M, Alvarez JV, Bonney ME, Chen C, D'cruz C, Pan T, Tadesse MG, Chodosh LA / 18 December 2008
Protein family review   
Bürglin TR / 19 November 2008
Method    
Antonov AV, Dietmann S, Mewes HW / 18 December 2008
Protein family review    
Balhorn R / 26 September 2007

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