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SIGNALP At ABCC
Name: 
SIGNALP
Version(s): 
3.0
Category: 
Protein Analysis, Sequence Analysis, Bioinformatics
Author(s)/Vendor(s): 
Center for Biological Sequence Analysis
BioCentrum-DTU
Technical University of Denmark
Building 208
DK-2800 Lyngby DENMARK
Program Description: 
SIGNALP predicts the presence  and  location of signal peptide  cleavage 
sites in  amino acid  sequences  from  different organisms:  Gram-positive 
bacteria, Gram-negative bacteria,  and eukaryotes.  The method incorporates a 
prediction of  cleavage sites and  a signal peptide/non-signal peptide 
 prediction  based on a combination of  several artificial neural networks.  
It also incorporates predictions done by a hidden Markov model specifically 
designed to distinguish between signal peptides, non-secretory proteins, and 
(for eukaryotes only) uncleaved signal anchors.
Computer platform(s): 
SGI Irix
Linux-32bit
Location: 
/usr/local/fbscapp/singalp-3.0
Access: 
Account at ABCC is required to use SIGNALP.

When using C-shell (and derivatives):
  source /usr/local/fbscapp/signalp-3.0/signalp.login

When using Bourne shell (and derivatives):
  . /usr/local/fbscapp/signalp-3.0/signalp.profile

After the above setup, just type:
  signalp
with required arguments.
Documentation: 
Unix man page is available: man signalp (after setting up your environment, see 
the section "Access" below).
Web Site: 


ABCC Contact Person:

Bob Stephens
bobs@ncifcrf.gov


Created By:

miaskiew


Created Time:



Updated By:



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