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KNetFold At ABCC
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KNetFold
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KNetFold is a new software for predicting the consensus secondary structure for
a given alignment of RNA sequences. It uses an innovative classifier system (a
hierarchical network of k-nearest neighbor classifiers) to compute for each pair
of alignment positions a "base pair" or "no base pair" prediction. In a recent
publication it was shown that for a test set of 49 RFAM alignments, the
performance of the method is higher compared to the programs PFOLD and
RNAalifold. The method is also able to predict pseudoknots.


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