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ProteinProspector

v 3.2.1

Tools for mining sequence databases
in conjunction with Mass Proteometry experiments.
Administrative Resources ProteinProspector Tools

Instructions

          Administering ProteinProspector
          Installing ProteinProspector
                    Windows NT (Intel) Version
                    Sun Unix Version
          User's Manual
          Frequently Asked Questions - UCSF
          Frequently Asked Questions - Local Copy
          News - UCSF

Known Bugs

          Current Bug Listing - UCSF
          Bug Listing - Local Copy
                    (known at release of this version)

ProteinProspector Revision History

ProteinProspector Automation Guidance

Useful Tables
MS-Fit MS-Tag MS-Seq MS-Edman FA-Index
MS-Digest MS-Product MS-Comp MS-Isotope DB-Stat

Sequence Database Search Programs

    MS-Fit ( search with peptide-mass fingerprinting data from MS)
    MS-Tag ( search with fragment-ion tag data from MS/MS )
    MS-Seq ( search with sequence tag data from MS/MS )
    MS-Edman ( search with Edman microsequence / peptide MS data)

Peptide / Protein MS Utility Programs

    MS-Digest ( peptide masses from enzymatic digestion of protein )
    MS-Product ( fragment ion masses for peptide )
    MS-Comp ( AA compositions fitting parent or fragment mass and immonium ions )
    MS-Isotope ( isotope patterns of peptides and organic molecules )

FASTA Database Manipulation/Information Tools

For questions/comments send email to: prbaker@itsa.ucsf.edu

Credits: These programs were developed by Karl Clauser and Peter Baker in the UCSF Mass Spectrometry Facility.
The Facility is directed by Dr. Alma Burlingame, a professor in the Department of Pharmaceutical Chemistry at UCSF.

Mass Spectrometry on the Internet
Last Modified: 3/8/1999 prbaker@itsa.ucsf.edu