PLoS Comput Biol Volume 5(5); May 2009

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Volume 5(5); May 2009

Research Articles

Representation of Time-Varying Stimuli by a Network Exhibiting Oscillations on a Faster Time Scale

Maoz Shamir, Oded Ghitza, Steven Epstein, and Nancy Kopell

PLoS Comput Biol. 2009 May; 5(5): e1000370. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000370.

PMCID: PMC2671161

| Abstract | Full Text | PDF–619K |

Predictive Feedback Can Account for Biphasic Responses in the Lateral Geniculate Nucleus

Janneke F. M. Jehee and Dana H. Ballard

PLoS Comput Biol. 2009 May; 5(5): e1000373. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000373.

PMCID: PMC2670540

| Abstract | Full Text | PDF–651K |

Prediction of Protein Binding Regions in Disordered Proteins

Bálint Mészáros, István Simon, and Zsuzsanna Dosztányi

PLoS Comput Biol. 2009 May; 5(5): e1000376. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000376.

PMCID: PMC2671142

Dating the Age of the SIV Lineages That Gave Rise to HIV-1 and HIV-2

Joel O. Wertheim and Michael Worobey

PLoS Comput Biol. 2009 May; 5(5): e1000377. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000377.

PMCID: PMC2669881

Differential Affinity and Catalytic Activity of CheZ in E. coli Chemotaxis

Siebe B. van Albada and Pieter Rein ten Wolde

PLoS Comput Biol. 2009 May; 5(5): e1000378. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000378.

PMCID: PMC2673030

Smoothing of, and Parameter Estimation from, Noisy Biophysical Recordings

Quentin J. M. Huys and Liam Paninski

PLoS Comput Biol. 2009 May; 5(5): e1000379. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000379.

PMCID: PMC2676511

Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Can't

Yasser Roudi, Sheila Nirenberg, and Peter E. Latham

PLoS Comput Biol. 2009 May; 5(5): e1000380. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000380.

PMCID: PMC2674569

| Abstract | Full Text | PDF–759K |

Functional Brain Networks Develop from a “Local to Distributed” Organization

Damien A. Fair, Alexander L. Cohen, Jonathan D. Power, Nico U. F. Dosenbach, Jessica A. Church, Francis M. Miezin, Bradley L. Schlaggar, and Steven E. Petersen

PLoS Comput Biol. 2009 May; 5(5): e1000381. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000381.

PMCID: PMC2671306

A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation

Nicholas J. Hudson, Antonio Reverter, and Brian P. Dalrymple

PLoS Comput Biol. 2009 May; 5(5): e1000382. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000382.

PMCID: PMC2671163

A Structure-Based Approach for Detection of Thiol Oxidoreductases and Their Catalytic Redox-Active Cysteine Residues

Stefano M. Marino and Vadim N. Gladyshev

PLoS Comput Biol. 2009 May; 5(5): e1000383. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000383.

PMCID: PMC2673044

Minimum Criteria for DNA Damage-Induced Phase Advances in Circadian Rhythms

Christian I. Hong, Judit Zámborszky, and Attila Csikász-Nagy

PLoS Comput Biol. 2009 May; 5(5): e1000384. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000384.

PMCID: PMC2677641

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		Other Issues: previous \| next \| latest \| archive Volume 5(5); May 2009 Research Articles Representation of Time-Varying Stimuli by a Network Exhibiting Oscillations on a Faster Time Scale Maoz Shamir, Oded Ghitza, Steven Epstein, and Nancy Kopell PLoS Comput Biol. 2009 May; 5(5): e1000370. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000370. PMCID: PMC2671161 \| Abstract \| Full Text \| PDF–619K \| Predictive Feedback Can Account for Biphasic Responses in the Lateral Geniculate Nucleus Janneke F. M. Jehee and Dana H. Ballard PLoS Comput Biol. 2009 May; 5(5): e1000373. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000373. PMCID: PMC2670540 \| Abstract \| Full Text \| PDF–651K \| Prediction of Protein Binding Regions in Disordered Proteins Bálint Mészáros, István Simon, and Zsuzsanna Dosztányi PLoS Comput Biol. 2009 May; 5(5): e1000376. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000376. PMCID: PMC2671142 \| Abstract \| Full Text \| PDF–1.4M \| Supplementary Material \| Dating the Age of the SIV Lineages That Gave Rise to HIV-1 and HIV-2 Joel O. Wertheim and Michael Worobey PLoS Comput Biol. 2009 May; 5(5): e1000377. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000377. PMCID: PMC2669881 \| Abstract \| Full Text \| PDF–353K \| Supplementary Material \| Differential Affinity and Catalytic Activity of CheZ in E. coli Chemotaxis Siebe B. van Albada and Pieter Rein ten Wolde PLoS Comput Biol. 2009 May; 5(5): e1000378. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000378. PMCID: PMC2673030 \| Abstract \| Full Text \| PDF–545K \| Supplementary Material \| Smoothing of, and Parameter Estimation from, Noisy Biophysical Recordings Quentin J. M. Huys and Liam Paninski PLoS Comput Biol. 2009 May; 5(5): e1000379. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000379. PMCID: PMC2676511 \| Abstract \| Full Text \| PDF–2.2M \| Supplementary Material \| Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Can't Yasser Roudi, Sheila Nirenberg, and Peter E. Latham PLoS Comput Biol. 2009 May; 5(5): e1000380. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000380. PMCID: PMC2674569 \| Abstract \| Full Text \| PDF–759K \| Functional Brain Networks Develop from a “Local to Distributed” Organization Damien A. Fair, Alexander L. Cohen, Jonathan D. Power, Nico U. F. Dosenbach, Jessica A. Church, Francis M. Miezin, Bradley L. Schlaggar, and Steven E. Petersen PLoS Comput Biol. 2009 May; 5(5): e1000381. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000381. PMCID: PMC2671306 \| Abstract \| Full Text \| PDF–632K \| Supplementary Material \| A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation Nicholas J. Hudson, Antonio Reverter, and Brian P. Dalrymple PLoS Comput Biol. 2009 May; 5(5): e1000382. Published online 2009 May 1. doi: 10.1371/journal.pcbi.1000382. PMCID: PMC2671163 \| Abstract \| Full Text \| PDF–1.1M \| Supplementary Material \| A Structure-Based Approach for Detection of Thiol Oxidoreductases and Their Catalytic Redox-Active Cysteine Residues Stefano M. Marino and Vadim N. Gladyshev PLoS Comput Biol. 2009 May; 5(5): e1000383. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000383. PMCID: PMC2673044 \| Abstract \| Full Text \| PDF–774K \| Supplementary Material \| Minimum Criteria for DNA Damage-Induced Phase Advances in Circadian Rhythms Christian I. Hong, Judit Zámborszky, and Attila Csikász-Nagy PLoS Comput Biol. 2009 May; 5(5): e1000384. Published online 2009 May 8. doi: 10.1371/journal.pcbi.1000384. PMCID: PMC2677641 \| Abstract \| Full Text \| PDF–276K \| Supplementary Material \|
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