| | This journal provides immediate access to some articles. Editorial Results of a PNAS author survey on an open access option for publication Nicholas R. Cozzarelli, Kenneth R. Fulton, and Diane M. Sullenberger PMCID: PMC337011 Commentaries Protein kinases talk to lipid phosphatases at the synapse Bogachan Sahin and James A. Bibb PMCID: PMC337012 Topographic organization is essential for pitch perception Shihab A. Shamma PMCID: PMC337013 Buruli toxin genes decoded Craig A. Townsend PMCID: PMC337014 An ultradian clock shapes genome expression in yeast Michael W. Young PMCID: PMC337015 Physical Sciences Applied Mathematics Diffusion at finite speed and random walks Joseph B. Keller PMCID: PMC337016 Control of calcium oscillations by membrane fluxes J. Sneyd, K. Tsaneva-Atanasova, D. I. Yule, J. L. Thompson, and T. J. Shuttleworth PMCID: PMC337063 Chemistry Ultrafast electron crystallography: Transient structures of molecules, surfaces, and phase transitions Chong-Yu Ruan, Franco Vigliotti, Vladimir A. Lobastov, Songye Chen, and Ahmed H. Zewail PMCID: PMC337017 From the Cover:
A tautomeric zinc sensor for ratiometric fluorescence imaging: Application to nitric oxide-induced release of intracellular zinc Christopher J. Chang, Jacek Jaworski, Elizabeth M. Nolan, Morgan Sheng, and Stephen J. Lippard PMCID: PMC337018 Statistics Normalization and analysis of cDNA microarrays using within-array replications applied to neuroblastoma cell response to a cytokine Jianqing Fan, Paul Tam, George Vande Woude, and Yi Ren PMCID: PMC337019 Biological Sciences Agricultural Sciences Disruption of Ixodes scapularis anticoagulation by using RNA interference Sukanya Narasimhan, Ruth R. Montgomery, Kathleen DePonte, Christian Tschudi, Nancy Marcantonio, John F. Anderson, John R. Sauer, Michael Cappello, Fred S. Kantor, and Erol Fikrig PMCID: PMC337020 Anthropology Neanderthal taxonomy reconsidered: Implications of 3D primate models of intra- and interspecific differences Katerina Harvati, Stephen R. Frost, and Kieran P. McNulty PMCID: PMC337021 Biochemistry Molecular dissection of water and glycerol permeability of the aquaglyceroporin from Plasmodium falciparum by mutational analysis Eric Beitz, Slavica Pavlovic-Djuranovic, Masato Yasui, Peter Agre, and Joachim E. Schultz PMCID: PMC337022 Methionine sulfoxide reductase A protects neuronal cells against brief hypoxia/reoxygenation Olena Yermolaieva, Rong Xu, Carrie Schinstock, Nathan Brot, Herbert Weissbach, Stefan H. Heinemann, and Toshinori Hoshi PMCID: PMC337023 Calmodulin phosphorylation and modulation of endothelial nitric oxide synthase catalysis Daniel M. Greif, David B. Sacks, and Thomas Michel PMCID: PMC337024 Biophysics Ultrafast electron crystallography: Transient structures of molecules, surfaces, and phase transitions Chong-Yu Ruan, Franco Vigliotti, Vladimir A. Lobastov, Songye Chen, and Ahmed H. Zewail PMCID: PMC337017 Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of α-helical content and compactness Takanori Uzawa, Shuji Akiyama, Tetsunari Kimura, Satoshi Takahashi, Koichiro Ishimori, Isao Morishima, and Tetsuro Fujisawa PMCID: PMC337025 DNA A-tract bending in three dimensions: Solving the dA4T4 vs. dT4A4 conundrum Richard Stefl, Haihong Wu, Sapna Ravindranathan, Vladimír Sklenář, and Juli Feigon PMCID: PMC337026 Inhibition of kinesin motility by ADP and phosphate supports a hand-over-hand mechanism William R. Schief, Rutilio H. Clark, Alvaro H. Crevenna, and Jonathon Howard PMCID: PMC337027 A proton-coupled dynamic conformational switch in the HIV-1 dimerization initiation site kissing complex Mihaela-Rita Mihailescu and John P. Marino PMCID: PMC337028 Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments Seishi Shimizu PMCID: PMC337029 Cell Biology From the Cover:
A tautomeric zinc sensor for ratiometric fluorescence imaging: Application to nitric oxide-induced release of intracellular zinc Christopher J. Chang, Jacek Jaworski, Elizabeth M. Nolan, Morgan Sheng, and Stephen J. Lippard PMCID: PMC337018 From the Cover:
A genomewide oscillation in transcription gates DNA replication and cell cycle Robert R. Klevecz, James Bolen, Gerald Forrest, and Douglas B. Murray PMCID: PMC337030 Stem cell-mediated muscle regeneration is enhanced by local isoform of insulin-like growth factor 1 Antonio Musarò, Cristina Giacinti, Giovanna Borsellino, Gabriella Dobrowolny, Laura Pelosi, Linda Cairns, Sergio Ottolenghi, Giulio Cossu, Giorgio Bernardi, Luca Battistini, Mario Molinaro, and Nadia Rosenthal PMCID: PMC337031 Cerebellar granule cell precursors can differentiate into astroglial cells Takayuki Okano-Uchida, Toshiyuki Himi, Yoshiaki Komiya, and Yasuki Ishizaki PMCID: PMC337032 Increase of the RNA-binding protein HuD and posttranscriptional up-regulation of the GAP-43 gene during spatial memory Alessia Pascale, Pavel A. Gusev, Marialaura Amadio, Tania Dottorini, Stefano Govoni, Daniel L. Alkon, and Alessandro Quattrone PMCID: PMC337033 Method for analyzing signaling networks in complex cellular systems Ivan Plavec, Oksana Sirenko, Sylvie Privat, Yuker Wang, Maya Dajee, Jennifer Melrose, Brian Nakao, Evangelos Hytopoulos, Ellen L. Berg, and Eugene C. Butcher PMCID: PMC337034 Alternative splicing generates an isoform of the human Sef gene with altered subcellular localization and specificity Ella Preger, Inbal Ziv, Ariel Shabtay, Ifat Sher, Michael Tsang, Igor B. Dawid, Yael Altuvia, and Dina Ron PMCID: PMC337035 Caspase cleavage of BimEL triggers a positive feedback amplification of apoptotic signaling Dan Chen and Qiang Zhou PMCID: PMC337036 Histone deacetylase (HDAC) inhibitor activation of p21WAF1 involves changes in promoter-associated proteins, including HDAC1 C.-Y. Gui, L. Ngo, W. S. Xu, V. M. Richon, and P. A. Marks PMCID: PMC337037 DNA–PKcs function regulated specifically by protein phosphatase 5 Thomas Wechsler, Benjamin P. C. Chen, Ryan Harper, Keiko Morotomi-Yano, Betty C. B. Huang, Katheryn Meek, James E. Cleaver, David J. Chen, and Matthias Wabl PMCID: PMC337038 Gene replacement reveals that p115/SNARE interactions are essential for Golgi biogenesis Manojkumar A. Puthenveedu and Adam D. Linstedt PMCID: PMC337039 Cooperation of the ErbB2 receptor and transforming growth factor β in induction of migration and invasion in mammary epithelial cells Sarah E. Seton-Rogers, Yu Lu, Lisa M. Hines, Malvika Koundinya, Joshua LaBaer, Senthil K. Muthuswamy, and Joan S. Brugge PMCID: PMC337040 Genetics Transgenic zebrafish produced by retroviral infection of in vitro-cultured sperm Kayoko Kurita, Shawn M. Burgess, and Noriyoshi Sakai PMCID: PMC337041 Duplication, coclustering, and selection of human Alu retrotransposons Jerzy Jurka, Oleksiy Kohany, Adam Pavlicek, Vladimir V. Kapitonov, and Michael V. Jurka PMCID: PMC337042 A role for p300/CREB binding protein genes in promoting cancer progression in colon cancer cell lines with microsatellite instability Yurij Ionov, Sei-Ichi Matsui, and John K. Cowell PMCID: PMC337043 Immunology Complement regulation at the molecular level: The structure of decay-accelerating factor P. Lukacik, P. Roversi, J. White, D. Esser, G. P. Smith, J. Billington, P. A. Williams, P. M. Rudd, M. R. Wormald, D. J. Harvey, M. D. M. Crispin, C. M. Radcliffe, R. A. Dwek, D. J. Evans, B. P. Morgan, R. A. G. Smith, and S. M. Lea PMCID: PMC337044 Kv1.3 potassium channels are localized in the immunological synapse formed between cytotoxic and target cells G. Panyi, G. Vámosi, Z. Bacsó, M. Bagdány, A. Bodnár, Z. Varga, R. Gáspár, L. Mátyus, and S. Damjanovich PMCID: PMC337045 Costimulatory ligand 4-1BBL (CD137L) as an efficient adjuvant for human antiviral cytotoxic T cell responses Jacob Bukczynski, Tao Wen, Kim Ellefsen, Jack Gauldie, and Tania H. Watts PMCID: PMC337046 Release of full-length 55-kDa TNF receptor 1 in exosome-like vesicles: A mechanism for generation of soluble cytokine receptors Feras I. Hawari, Farshid N. Rouhani, Xinle Cui, Zu-Xi Yu, Caitriona Buckley, Maryann Kaler, and Stewart J. Levine PMCID: PMC337047 An effective second-generation outer surface protein A-derived Lyme vaccine that eliminates a potentially autoreactive T cell epitope Theresa A. Willett, Abbie L. Meyer, Eric L. Brown, and Brigitte T. Huber PMCID: PMC337048 Medical Sciences Induction of aneuploidy by increasing chromosomal instability during dedifferentiation of hepatocellular carcinoma Ludwig Wilkens, Peer Flemming, Michael Gebel, Joerg Bleck, Christof Terkamp, Luzie Wingen, Hans Kreipe, and Brigitte Schlegelberger PMCID: PMC337049 Herpes simplex virus 1 interaction with Toll-like receptor 2 contributes to lethal encephalitis Evelyn A. Kurt-Jones, Melvin Chan, Shenghua Zhou, Jennifer Wang, George Reed, Roderick Bronson, Michelle M. Arnold, David M. Knipe, and Robert W. Finberg PMCID: PMC337050 Reduction of ischemia and reperfusion-induced myocardial damage by cytochrome P450 inhibitors David J. Granville, Babak Tashakkor, Cindy Takeuchi, Åsa B. Gustafsson, Chengqun Huang, M. Richard Sayen, Paul Wentworth, Jr., Mark Yeager, and Roberta A. Gottlieb PMCID: PMC337051 A Sertoli cell-selective knockout of the androgen receptor causes spermatogenic arrest in meiosis Karel De Gendt, Johannes V. Swinnen, Philippa T. K. Saunders, Luc Schoonjans, Mieke Dewerchin, Ann Devos, Karen Tan, Nina Atanassova, Frank Claessens, Charlotte Lécureuil, Walter Heyns, Peter Carmeliet, Florian Guillou, Richard M. Sharpe, and Guido Verhoeven PMCID: PMC337052 Microbiology From the Cover:
Differentiation and developmental pathways of uropathogenic Escherichia coli in urinary tract pathogenesis Sheryl S. Justice, Chia Hung, Julie A. Theriot, Daniel A. Fletcher, Gregory G. Anderson, Matthew J. Footer, and Scott J. Hultgren PMCID: PMC337053 Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2-heptylquinoline in cell-to-cell communication Eric Déziel, François Lépine, Sylvain Milot, Jianxin He, Michael N. Mindrinos, Ronald G. Tompkins, and Laurence G. Rahme PMCID: PMC337054 From the Cover:
Giant plasmid-encoded polyketide synthases produce the macrolide toxin of Mycobacterium ulcerans Timothy P. Stinear, Armand Mve-Obiang, Pamela L. C. Small, Wafa Frigui, Melinda J. Pryor, Roland Brosch, Grant A. Jenkin, Paul D. R. Johnson, John K. Davies, Richard E. Lee, Sarojini Adusumilli, Thierry Garnier, Stephen F. Haydock, Peter F. Leadlay, and Stewart T. Cole PMCID: PMC337055 Interferon antagonist proteins of influenza and vaccinia viruses are suppressors of RNA silencing Wan-Xiang Li, Hongwei Li, Rui Lu, Feng Li, Monica Dus, Peter Atkinson, Edward W. A. Brydon, Kyle L. Johnson, Adolfo García-Sastre, L. Andrew Ball, Peter Palese, and Shou-Wei Ding PMCID: PMC337056 Avian influenza A virus (H7N7) associated with human conjunctivitis and a fatal case of acute respiratory distress syndrome Ron A. M. Fouchier, Peter M. Schneeberger, Frans W. Rozendaal, Jan M. Broekman, Stiena A. G. Kemink, Vincent Munster, Thijs Kuiken, Guus F. Rimmelzwaan, Martin Schutten, Gerard J. J. van Doornum, Guus Koch, Arnold Bosman, Marion Koopmans, and Albert D. M. E. Osterhaus PMCID: PMC337057 Neuroscience Persistently active cannabinoid receptors mute a subpopulation of hippocampal interneurons Attila Losonczy, Ágota A. Biró, and Zoltan Nusser PMCID: PMC337058 Division of labor among distinct subtypes of inhibitory neurons in a cortical microcircuit of working memory X.-J. Wang, J. Tegnér, C. Constantinidis, and P. S. Goldman-Rakic PMCID: PMC337059 An analysis of the gene expression program of mammalian neural progenitor cells F. J. Livesey, T. L. Young, and C. L. Cepko PMCID: PMC337060 Antibody to DNA detects scrapie but not normal prion protein Wen-Quan Zou, Jian Zheng, Donald M. Gray, Pierluigi Gambetti, and Shu G. Chen PMCID: PMC337061 Pharmacology Antiinflammatory activity of soluble guanylate cyclase: cGMP-dependent down-regulation of P-selectin expression and leukocyte recruitment Amrita Ahluwalia, Paul Foster, Ramona S. Scotland, Peter G. McLean, Anthony Mathur, Mauro Perretti, Salvador Moncada, and Adrian J. Hobbs PMCID: PMC337062 Physiology Control of calcium oscillations by membrane fluxes J. Sneyd, K. Tsaneva-Atanasova, D. I. Yule, J. L. Thompson, and T. J. Shuttleworth PMCID: PMC337063 Plant Biology Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis Roman Ulm, Alexander Baumann, Attila Oravecz, Zoltán Máté, Éva Ádám, Edward J. Oakeley, Eberhard Schäfer, and Ferenc Nagy PMCID: PMC337064 Complex nested promoters control tissue-specific expression of acetyl-CoA carboxylase genes in wheat E. Zuther, S. Huang, J. Jelenska, H. Eilenberg, E. M. Arnold, X. Su, A. Sirikhachornkit, J. Podkowinski, A. Zilberstein, R. Haselkorn, and P. Gornicki PMCID: PMC337065 Multiple evidence for nucleotide metabolism in the chloroplast thylakoid lumen Cornelia Spetea, Torill Hundal, Björn Lundin, Mounia Heddad, Iwona Adamska, and Bertil Andersson PMCID: PMC337066 Coat protein regulates formation of replication complexes during tobacco mosaic virus infection S. Asurmendi, R. H. Berg, J. C. Koo, and R. N. Beachy PMCID: PMC337067 Psychology From the Cover:
Correct tonotopic representation is necessary for complex pitch perception Andrew J. Oxenham, Joshua G. W. Bernstein, and Hector Penagos PMCID: PMC337068 Corrections Proc Natl Acad Sci U S A. 2004 February 3; 101(5): 1426. doi: 10.1073/pnas.0308383101.PMCID: PMC337069 Corrects: Wen-Hua Zhang, et al. Fundamental role of the Rip2/caspase-1 pathway in hypoxia and ischemia-induced neuronal cell death. Proc Natl Acad Sci U S A. 2003 December 23; 100(26): 16012–16017. Proc Natl Acad Sci U S A. 2004 February 3; 101(5): 1426. doi: 10.1073/pnas.0308505101.PMCID: PMC337070 Corrects: Sukanya Narasimhan, et al. Borrelia burgdorferi transcriptome in the central nervous system of non-human primates. Proc Natl Acad Sci U S A. 2003 December 23; 100(26): 15953–15958. |
