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UGID:144479     UniGene Hs.113876     Homo sapiens (human)   WHSC1 Order cDNA clone, Links
Wolf-Hirschhorn syndrome candidate 1 (WHSC1)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
XP_001146084.1 PREDICTED: Wolf-Hirschhorn syndrome candidate 1 protein isoform 6 P. troglodytes 100.0 1364
NP_001035889.1 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1 H. sapiens 100.0 1364
NP_001074571.1 Wolf-Hirschhorn syndrome candidate 1 M. musculus 96.7 1345
NP_001076020.1 Wolf-Hirschhorn syndrome candidate 1 D. rerio 71.3 1162
NP_001084939.1 hypothetical protein LOC431996 X. laevis 70.7 477
XP_001694743.1 histone methyltransferase C. reinhardtii 49.5 202

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Expression Profile: View expression levels using UniGene's EST ProfileViewer
[Show more entries with profiles like this]
Note: Highly represented (1.8 pct) in cDNA library dbEST:3720, NIH_MGC_52.
GEO profiles: Gene expression profiles in the NCBI Gene Expression Omnibus database
cDNA Sources: lymph node; brain; mixed; embryonic tissue; uncharacterized tissue; intestine; eye; lung; testis; uterus; kidney; blood; bone; ovary; prostate; larynx; heart; cervix; pancreas; placenta; thyroid; vascular; mammary gland; liver; stomach; lymph; thymus; esophagus; muscle; skin; connective tissue; pituitary gland; adrenal gland; epididymis; ascites; bladder; spleen; nerve; ganglia; umbilical cord; trachea; bone marrow
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4p16.3
UniSTS entry: Chr 4 RH102926
UniSTS entry: Chr 4 SHGC-67304
UniSTS entry: Chr 4 SHGC-63596
UniSTS entry: Chr 4 SHGC-59822
UniSTS entry: Chr 4 SHGC-59511
UniSTS entry: Chr 4 A006P34
UniSTS entry: Chr 4 D4S2522E
UniSTS entry: Chr Y D10S16
UniSTS entry: Chr Y GDB:434012
UniSTS entry: Chr 4 RH92099
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (29)

AF071593.1 Homo sapiens MMSET type II (WHSC1) mRNA, complete cds P
AF071594.1 Homo sapiens MMSET type I (WHSC1) mRNA, complete cds P
BC052254.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1, mRNA (cDNA clone IMAGE:6302332), complete cds PA
AB029013.1 Homo sapiens mRNA for KIAA1090 protein, partial cds P
AJ007042.1 Homo sapiens mRNA for TRX5 protein P
BX647495.1 Homo sapiens mRNA; cDNA DKFZp686B10142 (from clone DKFZp686B10142) A
NM_007331.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1 (WHSC1), transcript variant 8, mRNA P
BC070176.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1, mRNA (cDNA clone IMAGE:6699237), partial cds PA
AY694128.1 Homo sapiens multiple myeloma SET domain containing protein type III (WHSC1) mRNA, complete cds, alternatively spliced P
AF083386.1 Homo sapiens putative WHSC1 protein (WHSC1) mRNA, complete cds P
AF083387.1 Homo sapiens putative WHSC1 protein (WHSC1) mRNA, alternative splice product missing exon 2, complete cds P
AF083388.1 Homo sapiens putative WHSC1 protein (WHSC1) mRNA, alternative splice product missing exons 2 and 3, complete cds P
AF083391.1 Homo sapiens putative WHSC1 protein (WHSC1) mRNA, alternative splice product ending in intron 11, complete cds P
BC094825.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1, mRNA (cDNA clone IMAGE:6644981), complete cds PA
AK026939.1 Homo sapiens cDNA: FLJ23286 fis, clone HEP09362, highly similar to AF083390 Homo sapiens putative WHSC1 protein mRNA PA
BC110899.1 Homo sapiens cDNA clone IMAGE:6173977, containing frame-shift errors P
DQ185035.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1 (WHSC1) mRNA, 3' UTR
AF330040.1 Homo sapiens IL-5 promoter REII-region-binding protein (REIIBP) mRNA, complete cds PA
NM_001042424.2 Homo sapiens Wolf-Hirschhorn syndrome candidate 1 (WHSC1), transcript variant 10, mRNA PA
BC141815.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1, mRNA (cDNA clone IMAGE:40147994), complete cds PA
BC152412.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1, mRNA (cDNA clone MGC:176638 IMAGE:8862517), complete cds P
AK289697.1 Homo sapiens cDNA FLJ77008 complete cds, highly similar to Homo sapiens Wolf-Hirschhorn syndrome candidate 1 (WHSC1), transcript variant 7, mRNA P
NM_133335.3 Homo sapiens Wolf-Hirschhorn syndrome candidate 1 (WHSC1), transcript variant 3, mRNA PA
NM_133334.2 Homo sapiens Wolf-Hirschhorn syndrome candidate 1 (WHSC1), transcript variant 7, mRNA P
NM_133331.2 Homo sapiens Wolf-Hirschhorn syndrome candidate 1 (WHSC1), transcript variant 2, mRNA PA
NM_133330.2 Homo sapiens Wolf-Hirschhorn syndrome candidate 1 (WHSC1), transcript variant 1, mRNA PA
EU733655.1 Homo sapiens multiple-myeloma-related WHSC1/MMSET isoform RE-IIBP (WHSC1) mRNA, partial cds, alternatively spliced P
BC032731.2 Homo sapiens Wolf-Hirschhorn syndrome candidate 1, mRNA (cDNA clone IMAGE:5529759), containing frame-shift errors P
BC020545.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1, mRNA (cDNA clone IMAGE:4398988), complete cds PA

EST sequences (10 of 662) [Show all sequences]

R14205.1 Clone IMAGE:28397 brain 5' read
AA905297.1 Clone IMAGE:1506166 mixed 3' read P
AA970302.1 Clone IMAGE:1572993 kidney 3' read A
AA907647.1 Clone IMAGE:1542558 mixed 3' read P
AI026800.1 Clone IMAGE:1645301 testis 3' read A
AI049986.1 Clone IMAGE:1700991 kidney 3' read
AI081930.1 Clone IMAGE:1681772 skin 3' read A
AI082700.1 Clone IMAGE:1660640 mixed 3' read A
AI127105.1 Clone IMAGE:1708104 heart 3' read P
CB054817.1 Clone IMAGE:3291685 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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