Collagen, type IV, alpha 2, Homo sapiens

Expression Profile:

View expression levels using UniGene's EST ProfileViewer
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Highly represented (1.1 pct) in cDNA library dbEST:9148, GN0294.

GEO profiles:

Gene expression profiles in the NCBI Gene Expression Omnibus database

cDNA Sources:

embryonic tissue; placenta; pancreas; uterus; brain; eye; lung; kidney; intestine; mixed; uncharacterized tissue; ovary; heart; mammary gland; stomach; bone; skin; prostate; nerve; muscle; liver; spleen; connective tissue; testis; thyroid; adipose tissue; adrenal gland; bone marrow; mouth; amniotic fluid; larynx; pharynx; vascular; blood; cervix; thymus; trachea; epididymis; ear; ganglia; ascites; bladder; parathyroid

NCBI

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Finding cDNAs

UGID:723875 UniGene Hs.508716 Homo sapiens (human) COL4A2

Links

Collagen, type IV, alpha 2 (COL4A2)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_001067473.1	PREDICTED: similar to Collagen alpha-1(IV) chain precursor	R. norvegicus	49.8	1667
NP_001022663.1	K04H4.1b	C. elegans	47.1	1501

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	13
	Map position:	13q34

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

BX648393.1	Homo sapiens mRNA; cDNA DKFZp686I14213 (from clone DKFZp686I14213)	PA
AY450357.1	Homo sapiens endogenous angiogenesis inhibitor mRNA, partial cds	P
AY455978.1	Homo sapiens canstatin mRNA, partial cds	P
BC068210.1	Homo sapiens cDNA clone IMAGE:6200878, partial cds	A
M24766.1	Human (clone pHAIV2-12) alpha-2 collagen type IV (COL4A2) mRNA, 3' end	P
CR601582.1	full-length cDNA clone CS0DI053YP12 of Placenta Cot 25-normalized of Homo sapiens (human)	A
CR590491.1	full-length cDNA clone CS0DI023YN09 of Placenta Cot 25-normalized of Homo sapiens (human)	P
BC080644.1	Homo sapiens collagen, type IV, alpha 2, mRNA (cDNA clone IMAGE:5424128), partial cds	PA
AF258350.1	Homo sapiens canstatin mRNA, partial cds	P
J02760.1	Human alpha-2 type IV collagen (COL4A2) mRNA, non-collagenous (NCL) region	P
AK025912.1	Homo sapiens cDNA: FLJ22259 fis, clone HRC02935, highly similar to HUMCOL4A2P Human (clone pHAIV2-12) alpha-2 collagen type IV (COL4A2) mRNA	PA
AF400430.1	Homo sapiens canstatin mRNA, partial cds	P
NM_001846.2	Homo sapiens collagen, type IV, alpha 2 (COL4A2), mRNA
AK294920.1	Homo sapiens cDNA FLJ56433 complete cds, highly similar to Collagen alpha-2(IV) chain precursor
BC016166.1	Homo sapiens collagen, type IV, alpha 2, mRNA (cDNA clone IMAGE:3507072), with apparent retained intron	PA
X05562.1	Human mRNA for alpha-2 chain of collagen IV N-terminus	P
BC035559.1	Homo sapiens collagen, type IV, alpha 2, mRNA (cDNA clone IMAGE:5167975), with apparent retained intron	PA
X05610.1	Human mRNA for type IV collagen alpha (2) chain	P

EST sequences (10 of 1004) [Show all sequences]

AA954798.1	Clone IMAGE:1574285	kidney	3' read	A
AA926807.1	Clone IMAGE:1486444	mouth	3' read	A
AA978138.1	Clone IMAGE:1578555	mixed	3' read
AA987386.1	Clone IMAGE:1593280	kidney	3' read
AA996118.1	Clone IMAGE:1635906	kidney	3' read	A
AI003534.1	Clone IMAGE:1699133	kidney	3' read	A
AI002942.1	Clone IMAGE:1698790	kidney	3' read	A
AA909035.1	Clone IMAGE:1523185	mixed	3' read	P
AI014768.1	Clone IMAGE:1611176	uncharacterized tissue	3' read	A
AI015627.1	Clone IMAGE:1638790	testis	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria