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Finding cDNAs
UGID:224176     UniGene Hs.420269     Homo sapiens (human)   COL6A2 Order cDNA clone, Links
Collagen, type VI, alpha 2 (COL6A2)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_511040.2 alpha 1 type IX collagen isoform 2 precursor H. sapiens 49.2 474
NP_647970.1 CG10625 CG10625-PA, isoform A D. melanogaster 48.1 181
XP_912463.1 PREDICTED: similar to collagen, type XXII, alpha 1, isoform 3 M. musculus 47.1 1142

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Expression Profile: View expression levels using UniGene's EST ProfileViewer
[Show more entries with profiles like this]
Note: Highly represented in several libraries
GEO profiles: Gene expression profiles in the NCBI Gene Expression Omnibus database
cDNA Sources: embryonic tissue; lung; placenta; bone; uterus; brain; prostate; skin; eye; connective tissue; heart; uncharacterized tissue; mixed; pancreas; intestine; testis; ovary; kidney; mammary gland; salivary gland; stomach; thymus; liver; epididymis; nerve; adipose tissue; thyroid; adrenal gland; trachea; mouth; ganglia; bone marrow; spleen; esophagus; bladder; larynx; blood; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 21
Map position: 21q22.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (26)

BT006913.1 Homo sapiens collagen, type VI, alpha 2 mRNA, complete cds
BC065509.1 Homo sapiens collagen, type VI, alpha 2, mRNA (cDNA clone MGC:74769 IMAGE:5723962), complete cds PA
CR536573.1 Homo sapiens full open reading frame cDNA clone RZPDo834D0422D for gene COL6A2, collagen, type VI, alpha 2; complete cds, incl. stopcodon
CR626094.1 full-length cDNA clone CS0DE004YF18 of Placenta of Homo sapiens (human) P
CR625689.1 full-length cDNA clone CS0DI009YI11 of Placenta Cot 25-normalized of Homo sapiens (human)
CR624946.1 full-length cDNA clone CS0DI056YG08 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR619670.1 full-length cDNA clone CS0DE001YA07 of Placenta of Homo sapiens (human) P
CR618828.1 full-length cDNA clone CS0DM003YO13 of Fetal liver of Homo sapiens (human) P
CR618549.1 full-length cDNA clone CS0DE003YG10 of Placenta of Homo sapiens (human)
CR611112.1 full-length cDNA clone CS0DI033YG23 of Placenta Cot 25-normalized of Homo sapiens (human)
CR607797.1 full-length cDNA clone CS0DI056YB08 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR604559.1 full-length cDNA clone CS0DI047YA13 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR597541.1 full-length cDNA clone CS0DI030YJ16 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR590704.1 full-length cDNA clone CS0DI056YP06 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR590108.1 full-length cDNA clone CS0DI036YC03 of Placenta Cot 25-normalized of Homo sapiens (human)
AL360197.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 740696 PA
BC002484.2 Homo sapiens collagen, type VI, alpha 2, mRNA (cDNA clone IMAGE:3347413), complete cds A
AY029208.1 Homo sapiens type VI collagen alpha 2 chain precursor (COL6A2) mRNA, complete cds, alternatively spliced PA
NM_001849.3 Homo sapiens collagen, type VI, alpha 2 (COL6A2), transcript variant 2C2, mRNA A
NM_058175.2 Homo sapiens collagen, type VI, alpha 2 (COL6A2), transcript variant 2C2a', mRNA A
NM_058174.2 Homo sapiens collagen, type VI, alpha 2 (COL6A2), transcript variant 2C2a, mRNA A
M34573.1 Human alpha-2 collagen type VI-a' gene, exon 1.
AK093995.1 Homo sapiens cDNA FLJ36676 fis, clone UTERU2004807, highly similar to Collagen alpha 2(VI) chain precursor
X15977.1 Human mRNA for collagen VI alpha-2 alternative C-terminal domain
X06195.1 Human mRNA for collagen alpha 2 (VI) chain 5' region
M34570.1 Human alpha-2 collagen type VI mRNA, 3' end

EST sequences (10 of 1634) [Show all sequences]

AA954341.1 Clone IMAGE:1560444 intestine 3' read A
AA974251.1 Clone IMAGE:1585943 uncharacterized tissue 3' read A
AA977461.1 Clone IMAGE:1591163 kidney 3' read
AI002190.1 Clone IMAGE:1593139 kidney 3' read
AA905138.1 Clone IMAGE:1523375 mixed 3' read A
AI018639.1 Clone IMAGE:1631013 mammary gland 3' read A
AI023356.1 Clone IMAGE:1651522 skin 3' read
AI028720.1 Clone IMAGE:1644813 testis 3' read
AA928714.1 Clone IMAGE:1560134 intestine 3' read A
AI032130.1 Clone IMAGE:1611268 uncharacterized tissue 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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