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UGID:888193     UniGene Mm.286593     Mus musculus (mouse)   Smarca4 Order cDNA clone, Links
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 (Smarca4)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_001122316.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform B H. sapiens 99.8 1646
XP_867793.1 PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform 15 C. lupus familiaris 99.8 1617
NP_730088.1 brahma CG5942-PD, isoform D D. melanogaster 71.3 1630
XP_957128.1 SNF2-family ATP dependent chromatin remodeling factor snf21 N. crassa 54.0 1313
NP_850847.1 CHR17 (CHROMATIN REMODELING FACTOR17); DNA-dependent ATPase A. thaliana 51.4 634
XP_982396.1 PREDICTED: similar to chromodomain helicase DNA binding protein 2 isoform 5 M. musculus 48.5 709

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Expression Profile: View expression levels using UniGene's EST ProfileViewer
[Show more entries with profiles like this]
GEO profiles: Gene expression profiles in the NCBI Gene Expression Omnibus database
cDNA Sources: embryonic tissue; brain; eye; mammary gland; mixed; bone marrow; pancreas; spleen; pituitary gland; lung; skin; fertilized ovum; uncharacterized tissue; ovary; liver; tongue; extraembryonic tissue; intestine; testis; prostate; thymus; thyroid; kidney; heart; inner ear; spinal cord; epididymis; dorsal root ganglion; uterus; stomach; salivary gland; bone; connective tissue; nasopharynx; blood; muscle
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9 A3|9 6.0 cM
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (21)

BC023830.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone IMAGE:5345334), partial cds PA
AK051530.1 Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130054P04 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, full insert sequence P
BC032162.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone IMAGE:5345333) PA
BC014760.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone IMAGE:4218517), partial cds PA
U53563.1 Mus musculus Brg1 mRNA, partial cds P
BC054056.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone IMAGE:5257181), partial cds PA
BC060229.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone IMAGE:6840009) PA
BC061214.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone IMAGE:30253731), partial cds PA
NM_011417.2 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 (Smarca4), mRNA PA
BC079560.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone MGC:90778 IMAGE:30533489), complete cds PA
AK180644.1 Mus musculus cDNA, clone:Y0G0115E14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034707, based on BLAT search P
AK177177.1 Mus musculus cDNA, clone:Y0G0101O04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034710, based on BLAT search P
AK142137.1 Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230050A16 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, full insert sequence P
AK141517.1 Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530049C04 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, full insert sequence P
AK166837.1 Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0015P12 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, full insert sequence P
AK147285.1 Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:M5C1007E14 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, full insert sequence P
AK135308.1 Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720467N17 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, full inse ... P
AK147047.1 Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920091F08 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, full insert sequence P
AK160825.1 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:3425403L20 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, full insert sequence P
BC023186.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone IMAGE:4945540), partial cds PA
BC026672.1 Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, mRNA (cDNA clone IMAGE:5025538), partial cds PA

EST sequences (10 of 777) [Show all sequences]

CA565971.1 Clone NIA:K0344E05_IMAGE:30058516 bone 5' read PM
CA577984.1 Clone NIA:K0717A10_IMAGE:30075177 bone marrow 5' read P
CA578134.1 Clone NIA:K0719A09_IMAGE:30075368 bone marrow 5' read P
CA578147.1 Clone NIA:K0719C10_IMAGE:30075393 bone marrow 5' read
CA579244.1 Clone NIA:K0734F11_IMAGE:30076870 bone marrow 5' read P
CA579489.1 Clone NIA:K0738B08_IMAGE:30077203 bone marrow 5' read P
CA579493.1 Clone NIA:K0738C03_IMAGE:30077210 bone marrow 5' read P
CA579671.1 Clone NIA:K0740G08_IMAGE:30077455 bone marrow 5' read P
CA749155.1 Clone IMAGE:6828228 brain 5' read P
CA749257.1 Clone IMAGE:6831354 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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