Research Interests
Gene expression
data analysis, survival analysis, familial association analysis, and
diagnositc error.
Selected Publications
As of May 1, 2006
Shih, J.H. and Su, S. (2006). Analysis of failure time
data with multi-level clustering: with application to the child vitamin A
intervention trial in Nepal. In review.
Chatterjee, N., Zeynep, K., Shih, J.H. and Gail, M.
(2006). Case-control study with family history data: a combined approach of
kin-cohort and case-control analysis. Biometrics 62, 36-48.
Lu, S., Shih, J.H. (2006). Case-cohort designs and
analysis of clustered failure time data.
Biometrics, in press.
Lusa, L.,
McShane, L.M., Radmacher, M.D., Shih, J.H., Wright,
G., Simon, R. (2006) Appropriateness
of some resampling-based inference procedures for
assessing performance of prognostic classifiers derived from microarray data. Statistics
in Medicine, in press.
Dobbin, K. Shih, J.H. and Simon, R. (2005) Comment on Evaluation
of the gene specific dye bias in cDNA microarray experiments. Bioinformatics, 21: 2803-2804
Shih, J.H., Michalowska, A.M., Dobbin, K., Ye, Y., Qiu
T.H., Green J.E. (2004). Effects of pooling mRNA in microarray
class comparisons. Bioinformatics,
20: 3318-3325.
Dobbin, K., Shih, J.H. and Simon, R. (2003). Statistical design of reverse
dye microarrays. Bioinformatics
19, 803:810.
Vasselli, J., Shih, J.H., Iyengar,
S.R., Maranchie, J., Riss, J., Worrell, R.,
Torres-Cabala, C., Tabios,R., Mariotti,
A., Stearman, R., Merino, R., Walther, M.W., Simon,
R., Klausner, R., Linehan,
W.M. (2003). Predicting survival in patients with metastatic
kidney cancer by gene expression profiling in the primary tumor. Proceedings of National Academy of Sciences 100, 6958-6963.
Dobbin, K., Shih,
J.H. and Simon, R. (2003) Questions and answers on design of dual-label microarrays for identifying differentially expressed
genes. Journal of the National Cancer
Institute 95, 1362-1369.
Shih, J.H. and Fay, M.P. (2003). A class of permutation tests for some
two-sample survival data problems. Contemporary
biostatistical issues in clinical trials, Geller, N. (editor).
Albert, P.S. and Shih, J.H. (2003) Modeling tumor growth with random
onset. Biometrics, 59, 897-906.
Chatterjee, N. and Shih, J.H. (2003) On use of bivariate survival models with cure fraction. Biometrics 59, 1184-1185.
McShane, L.M., Shih, J.H. and Michalowska, A.M.
(2003) Statistical issues in the design and analysis of microarray
studies in animal models. Journal of
Mammary Gland Biology and Neoplasia 8, 359-374.
Shih, J.H. and Chatterjee, N. (2002). Survival analysis of family data
from case control studies. Biometrics 58, 502-509.
Shih, J.H. (2002). An Introduction to survival analysis. Principles and practice of clinical research,
Gallin, J.I. (editor), 259-266.
Albert, P.S., McShane, L., Shih, J.H. (2001) and the U.S. National Cancer
Institute Bladder Tumor Marker Network. Latent modeling approaches for
assessing diagnostic error in P53 immunohistochemical
assays in bladder cancer without a gold standard. Biometrics 57, 610-619.
Proschan, M.A., McMahon, R.P., Shih, J.H., Hunsberger, S.A., Geller, N.L.,
Wittes, J., Knatterud, G.
(2001). Statistical properties of the Wittes, Lakatos, and Probstfield
imputation method in clinical trials. Journal of Statistical Planning and Inference
96, 155-165.
Chatterjee, N., Shih, J.H. (2001). A bivariate
mixture model for modeling familial association in diseases. Biometrics 57, 779-786.
Chatterjee, N. Shih, J.H., Hartge, P. Brody, L.,
Tucker, M., Wacholder, S. (2000). Association and aggregation analysis using
kin-cohort designs with applications to genotype and family history data from
the Washington Ashkenazi Study. Genetic
Epidemiology, 21, 123-138.
Shih, J.H. and Fay, M.P. (1999). A class of permutation tests for
stratified survival data. Biometrics 55, 1156-1161.
Shih, J.H. and Albert, P.S. (1999). Latent model for correlated binary
data with diagnostic error. Biometrics 55, 1232-1235.
Shih, J.H. (1998). A goodness of fit test for association in a bivariate survival model. Biometrika 85,
189-200.
Fay, M.P., Shih, J.H. (1998). Permutation tests using estimated distribution
functions. Journal of the American
Statistical Association 93, 387-396.
Shih, J.H. (1998). Modeling multivariate discrete failure time data. Biometrics 54, 330-343.
brb@linus.nci.nih.gov