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Finding cDNAs
UGID:135691     UniGene Hs.29665     Homo sapiens (human)   CLSTN1 Order cDNA clone, Links
Calsyntenin 1 (CLSTN1)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_001009566.1 calsyntenin 1 isoform 1 H. sapiens 100.0 980
XP_001118466.1 PREDICTED: calsyntenin 1 M. mulatta 99.7 909
NP_075538.1 calsyntenin 1 M. musculus 95.8 978
NP_001071252.1 calsyntenin 1 D. rerio 83.3 946
XP_960064.2 60S ribosomal protein L19 N. crassa 71.4 70
NP_192132.1 60S ribosomal protein L19 (RPL19C) A. thaliana 64.8 71
NP_001086151.1 MGC84020 protein X. laevis 57.4 920

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Expression Profile: View expression levels using UniGene's EST ProfileViewer
[Show more entries with profiles like this]
Note: Highly represented (3.1 pct) in cDNA library dbEST:5833, HT0841.
Note: Highly represented (1.5 pct) in cDNA library dbEST:7513, CS0049.
Note: Highly represented (1.4 pct) in cDNA library dbEST:7562, CI0089.
GEO profiles: Gene expression profiles in the NCBI Gene Expression Omnibus database
cDNA Sources: brain; eye; intestine; lung; uncharacterized tissue; pancreas; mixed; kidney; embryonic tissue; uterus; prostate; mammary gland; lymph node; testis; lymph; esophagus; skin; larynx; vascular; heart; ovary; liver; pharynx; placenta; connective tissue; muscle; thyroid; trachea; mouth; thymus; umbilical cord; spleen; bladder; stomach; bone; pituitary gland; ear; tonsil; salivary gland; ascites; nerve; parathyroid; cervix; blood; pineal gland; adrenal gland; amniotic fluid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p36.22
UniSTS entry: Chr 1 RH11792
UniSTS entry: Chr 1 WI-16255
UniSTS entry: Chr 1 WI-16324
UniSTS entry: Chr 1 RH63840
UniSTS entry: Chr 1 RH50479
UniSTS entry: Chr 1 SHGC-74173
UniSTS entry: Chr 1 NIB2114
UniSTS entry: Chr 1 RH15907
UniSTS entry: IB3691
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

AB020718.1 Homo sapiens mRNA for KIAA0911 protein, partial cds P
AF438482.1 Homo sapiens non-classical cadherin XB31alpha1 (XB31alpha) mRNA, complete cds PA
AY545556.1 Homo sapiens calsyntenin 1-like mRNA, complete sequence P
AK000605.1 Homo sapiens cDNA FLJ20598 fis, clone KAT07882, highly similar to AB020718 Homo sapiens mRNA for KIAA0911 protein PA
AK001591.1 Homo sapiens cDNA FLJ10729 fis, clone NT2RP3001260, highly similar to Calsyntenin-1 precursor P
NM_014944.3 Homo sapiens calsyntenin 1 (CLSTN1), transcript variant 2, mRNA PA
AY753301.1 Homo sapiens alcadein alpha-1 mRNA, complete cds P
NM_001009566.1 Homo sapiens calsyntenin 1 (CLSTN1), transcript variant 1, mRNA PA
AK225500.1 Homo sapiens mRNA for calsyntenin 1 isoform 1 variant, clone: JTH08932 PA
AK056820.1 Homo sapiens cDNA FLJ32258 fis, clone PROST1000272, highly similar to Calsyntenin-1 precursor P
AK289798.1 Homo sapiens cDNA FLJ76750 complete cds, highly similar to Homo sapiens calsyntenin 1 (CLSTN1), transcript variant 2, mRNA P
BC033902.2 Homo sapiens calsyntenin 1, mRNA (cDNA clone MGC:33741 IMAGE:5263192), complete cds PA
AK304813.1 Homo sapiens cDNA FLJ61580 complete cds, highly similar to Calsyntenin-1 precursor P

EST sequences (10 of 1263) [Show all sequences]

R14532.1 Clone IMAGE:29105 brain 5' read
AA974082.1 Clone IMAGE:1586230 uncharacterized tissue 3' read A
AA977520.1 Clone IMAGE:1561093 mixed 3' read P
AA985318.1 Clone IMAGE:1616305 brain 3' read P
AA988686.1 Clone IMAGE:1593478 kidney 3' read A
AA989110.1 Clone IMAGE:1601711 lung 3' read P
AA989501.1 Clone IMAGE:1606269 kidney 3' read P
AA993989.1 Clone IMAGE:1628906 mixed 3' read A
R16679.1 Clone IMAGE:129668 mixed 5' read P
R16680.1 Clone IMAGE:129668 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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