Cold shock domain protein A, Homo sapiens

Expression Profile:

View expression levels using UniGene's EST ProfileViewer
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Highly represented (8.0 pct) in cDNA library dbEST:9362, MT0255.

Highly represented (1.1 pct) in cDNA library dbEST:8012, ET0208.

GEO profiles:

Gene expression profiles in the NCBI Gene Expression Omnibus database

cDNA Sources:

muscle; eye; testis; lung; blood; embryonic tissue; brain; skin; mixed; pancreas; uncharacterized tissue; liver; lymph node; connective tissue; prostate; placenta; kidney; bladder; heart; ovary; intestine; adipose tissue; adrenal gland; stomach; larynx; thyroid; mammary gland; uterus; thymus; cervix; vascular; ear; mouth; salivary gland; ganglia; nerve; umbilical cord; bone; spleen; bone marrow; pharynx; lymph; esophagus; trachea; peritoneum; parathyroid

NCBI

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Finding cDNAs

UGID:165266 UniGene Hs.221889 Homo sapiens (human) CSDA

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Cold shock domain protein A (CSDA)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_856109.1	PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (D	C. lupus familiaris	76.3	324
NP_491645.1	C.Elegans Y-box family member (cey-2)	C. elegans	52.2	184

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	12
	Map position:	12p13.1

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

NM_003651.3	Homo sapiens cold shock domain protein A (CSDA), mRNA	PA
CR624602.1	full-length cDNA clone CS0DK011YH09 of HeLa cells Cot 25-normalized of Homo sapiens (human)
AB209896.1	Homo sapiens mRNA for CSDA protein variant protein	P
X95325.1	H.sapiens mRNA for DNA binding protein A variant	P
BC008801.2	Homo sapiens cold shock domain protein A, mRNA (cDNA clone MGC:3872 IMAGE:3634981), complete cds	PA
BC009744.2	Homo sapiens cold shock domain protein A, mRNA (cDNA clone MGC:10359 IMAGE:3835480), complete cds	PA
X72712.1	H.sapiens hCSDA mRNA	P
BC015564.1	Homo sapiens cold shock domain protein A, mRNA (cDNA clone MGC:12695 IMAGE:4137643), complete cds	PA
BC150580.1	Homo sapiens cDNA clone IMAGE:40133100
BC015913.1	Homo sapiens cold shock domain protein A, mRNA (cDNA clone MGC:20058 IMAGE:4563632), complete cds	PA
BC021926.1	Homo sapiens cold shock domain protein A, mRNA (cDNA clone MGC:31931 IMAGE:4551107), complete cds	PA
AK314846.1	Homo sapiens cDNA, FLJ95739, highly similar to Homo sapiens cold shock domain protein A (CSDA), mRNA
M24069.1	Human DNA-binding protein A (dbpA) gene, 3' end	P

EST sequences (10 of 946) [Show all sequences]

AA960783.1	Clone IMAGE:1564546	mixed	3' read	P
AA962809.1	Clone IMAGE:1573713	kidney	3' read	P
AA969622.1	Clone IMAGE:1579160	mixed	3' read	P
AA887521.1	Clone IMAGE:1500525	lung	3' read	P
AI004865.1	Clone IMAGE:1621033	testis	3' read
AI017806.1	Clone IMAGE:1635973	kidney	3' read	P
AI026736.1	Clone IMAGE:1644706	testis	3' read	A
AI056564.1	Clone IMAGE:1671721	uncharacterized tissue	3' read	A
AI074968.1	Clone IMAGE:1667149	skin	3' read	P
AI081577.1	Clone IMAGE:1660862	mixed	3' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria