Collagen, type XVII, alpha 1, Homo sapiens

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UGID:145185 UniGene Hs.117938 Homo sapiens (human) COL17A1

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Collagen, type XVII, alpha 1 (COL17A1)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_001476693.1	PREDICTED: similar to Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase isoform 4	M. musculus	46.2	251

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	Restricted Expression:	pharynx [show more like this]
		head and neck tumor [show more like this]
		adult [show more like this]
	Expression Profile:	View expression levels using UniGene's EST ProfileViewer [Show more entries with profiles like this]
	Note:	Highly represented (61.6 pct) in cDNA library dbEST:5750, HT0713.
	Note:	Highly represented (2.2 pct) in cDNA library dbEST:7793, HT1136.
	Note:	Highly represented (1.0 pct) in cDNA library dbEST:3248, HT0078.
	GEO profiles:	Gene expression profiles in the NCBI Gene Expression Omnibus database
	cDNA Sources:	pharynx; skin; larynx; placenta; mouth; eye; intestine; blood; bladder; mixed; uncharacterized tissue; pancreas; uterus; mammary gland; testis; thymus; stomach; brain; prostate; heart; embryonic tissue; lung; liver; ascites; esophagus; thyroid

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	10
	Map position:	10q24.3

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

NM_000494.3	Homo sapiens collagen, type XVII, alpha 1 (COL17A1), mRNA
AF136185.1	Homo sapiens collagen type XVII (COL17A1) gene, 3' UTR, long form
AK309940.1	Homo sapiens cDNA, FLJ99981
AK300226.1	Homo sapiens cDNA FLJ50211 complete cds, highly similar to Collagen alpha-1(XVII) chain
AK300117.1	Homo sapiens cDNA FLJ60881 complete cds, highly similar to Collagen alpha-1(XVII) chain	A
BC004478.2	Homo sapiens collagen, type XVII, alpha 1, mRNA (cDNA clone IMAGE:3688634), partial cds	A
AF136186.1	Homo sapiens collagen type XVII (COL17A1) gene, 3' UTR, short form
M63730.1	Human bullous pemphigoid (BP180) mRNA, partial cds	P
M91669.1	Human Bullous pemphigoid autoantigen BP180 gene, 3' end	P

EST sequences (10 of 677) [Show all sequences]

AA926883.1	Clone IMAGE:1486599	mouth	3' read
AA922167.1	Clone IMAGE:1543671	mixed	3' read	A
BX117940.1	Clone IMAGp998D20547_;_IMAGE:252259	placenta
AI184334.1	Clone IMAGE:1731873	heart	3' read
CB120762.1	Clone L11SNU354-1-H03	liver	5' read
AA926678.1	Clone IMAGE:1541988	mixed	3' read	A
AI373447.1	Clone IMAGE:2042222	uterus	3' read	A
AI373457.1	Clone IMAGE:2042223	uterus	3' read	A
AI572644.1	Clone IMAGE:2213929	lung	3' read	A
AI671290.1	Clone IMAGE:2305709	uncharacterized tissue	3' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria