This list includes tools, content databases and projects that have been listed with tools. These items are listed alphabetically on caBIG-CBIIT Products A to Z.

CORE

The major bullets denote products. For reference, sub-bullets show some or all of the components of CORE products.

CORE Products and infrastructure

• caAdapter
• caCORE middleware or caCORE Services; term no longer used; refers to caDSR and EVS APIs
• caCORE SDK
• caDSR (Cancer Data Standards Registry and Repository)
  • caDSR Admin Tool
  • caDSR database
  • CDE Browser
  • CDE Curation Tool
  • Form Builder
  • Freestyle Search
  • caDSR Sentinel Tool
  • SIW (Semantic Integration Workbench)
  • UML Browser (or UML Model Browser)
  • UML Loader (managed by and thus associated with the caDSR team)
  • XMI Handler (used by caAdapter, caCORE SDK, and SIW, managed by and thus associated with the caDSR team)
• caGrid (the services are for reference from the Zope/Plone sites as of November 2007)
  • Metadata Services
    • Cancer Data Standards Repository Service
    • Enterprise Vocabulary Service
    • Global Model Exchange Service (a feature of caGrid infrastructure)
    • Index Service
  • Security Services
    • Authentication Service
    • Dorian Service
    • Grid Grouper Service
    • Master Grid Trust Service
    • Slave Grid Trust Service
  • Higher Level Services
    • Federated Query Processor Service
    • Workflow Service
• Common Logging Module (CLM)/Common Security Model (CSM)
• EVS (Enterprise Vocabulary Services)
  • Biomed GT Content (LexWiki Authoring Platform, Semantic MediaWiki)
  • CORE EVS API
  • LexBIG Server
  • LexEVS, superseding EVS API
  • NCI BioPortal
  • NCI Metathesaurus
  • NCI Protégé
  • NCI Thesaurus
  • Terminology Open Portal (a project)

VCDE

caMassClass 

Products no longer part of the CORE product line

• caB2B is part of ICR
• caBIO is part of ICR
• caFramework is an obsolete designation

Clinical Trials Management Systems (CTMS)

• BRIDG (Biomedical Research Integrated Domain Group) (a project)
• C3D (Cancer Central Clinical Database)
• C3D Connector
• C3PR (Cancer Central Clinical Participant Registry)
• caAERS (Cancer Adverse Events Reporting System)
• caCTUS (Clinical Trials Unified System) SEE CTODS Lab Viewer, NCI Clinical Trials Portal
• caMatch
• caXchange (Clinical Data Exchange fomerly Clinical/Lab Data Hub or Lab Integration Hub)
• CDS (Clinical Data System)
• Clinical Trials Informatics Initiative
• Clinical Trials Management System Workspace
• CRIX SEE Firebird
• CTODS (Clinical Trials Object Data System)
• CTODS Lab Viewer
• CTOM (Clinical Trials Object Model) SEE CTODS
• DCP (Division of Cancer Prevention ) DESK (Enterprise System Knowledgebase)
• Firebird (Federal Investigator Registry of Biomedical Research Data)
• Janus
• NCI Clinical Trials Portal (formerly caCTUS Lite)
• PSC (Patient Study Calendar

Imaging

• caIMAGE
• NCIA (National Cancer Image Archive, formerly I3; includes NCIA Source, NCIA Cedera I-Response Client)

Integrative Cancer Research (ICR)

• Bioconductor
• caArray
• caBIO (Cancer Biomedical Information Objects)
• caB2B (Cancer Bench-to-Bedside)
• caELMIR Extensions (Cancer Electronic Laboratory Management Information Resource)
• caFE (Cancer Function Express)
• caGWAS (Cancer Genome-Wide Association Studies)
• caIntegrator applications
  • CGEMS (Cancer Genetic Markers of Susceptibility)
  • CSP (Cancer Sequency Project)
  • EAGLE (Environmental And Genetic Lung (Cancer) Etiology)
  • I-SPY
  • REMBRANDT (REpository of Molecular BRAin Neoplasia DaTa)
  • TARGET (Therapeutically Applicable Research to Generate Effective Treatments)
• caLIMS (cancer Laboratory Information System)
• caMOD (Cancer Models Database)
• caNanolab
• caTRIP (Cancer Translational Research Informatics Platform)
• CGAP (Cancer Genome Anatomy Project)
• CGAP GAI (Cancer Genome Anatomy Project Genetic Annotation Initiative)
• CMA (Cancer Molecular Analysis Tools project)
• CMAP (Cancer Molecular Analysis Project)
• CMP (Cancer Molecular Pages)
• CPAS (LabKey CPAS, Computational Proteomics Analysis System)
• cPath (Cancer Pathways)
• Cytoscape
• DWD (Distance Weighted Discrimination)
• GeneConnect
• GenePattern
• geWorkbench
• GoMiner (Gene Ontology Miner)
• GPS-XAR (General Proteomics Standard tool for XAR format)
• gridPIR (Protein Information Resource)
• LabKey CPAS See CPAS
• LPG LIMS
• Pathways
• Proteomics/LIMS (Laboratory Information Management System)
• Q5 (Probabilistic classification algorithm)
• QPACA (Quantiative Pathway Analysis in Cancer)
• Reactome API
• RProteomics
• SEED Genome Annotation System
• TCGA (The Cancer Genome Atlas)
• The Human Serum Proteome
• TrAPSS (Transcript Annotation Prioritization and Screening System)
• VISDA (Visual Statistical Data Analyzer)
• webGenome

Tissue Banks and Pathology Tools (TBPT)

• Biospecimen Research Database
• caTIES (Cancer Text Information Extraction System)
• caTissue Core
• caTissue Suite