NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
6601
  • 90% protein similarity to: NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7 [Mus musculus] (Similar to EST: BP774357)
  • NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7
    		•   BP774357  
    GeneNetwork    		 29683 [**] 
    		   8 C3 1
    6602
  • Similar to EST: BB203584
    		•   BB203584  
    GeneNetwork    		       1
    6603
  • Similar to EST: AI852999
  • Transcribed locus, strongly similar to NP_077754.2 leucine aminopeptidase 3 [Mus musculus]
    		•   AI852999  
    GeneNetwork    		 341797  
    		   11 1
    6604
  • Similar to EST: AA867377
    		•   AA867377  
    GeneNetwork    		       1
    6605
  • Similar to EST: BB449169
    		•   BB449169  
    GeneNetwork    		       1
    6606
  • Similar to EST: CN703377
    		•   CN703377  
    GeneNetwork    		       1
    6607
  • Similar to EST: BU919534
  • Transcribed locus
    		•   BU919534  
    GeneNetwork    		 394833  
    		   1 1
    6608
  • Similar to EST: AA867834
    		•   AA867834  
    GeneNetwork    		       1
    6609
  • Similar to EST: BG088433
    		•   BG088433  
    GeneNetwork    		       1
    6610
  • Similar to EST: AI553376
    		•   AI553376  
    GeneNetwork    		       1
    6611
  • 61% protein similarity to: PREDICTED: hypothetical protein XP_580018 [Rattus norvegicus] (Similar to EST: BB231593)
  • Pyruvate dehydrogenase kinase, isoenzyme 1
    		•   BB231593  
    GeneNetwork    		 34411 [**] 
    		   2 C3 1
    6612
  • Similar to EST: BQ568057
    		•   BQ568057  
    GeneNetwork    		       1
    6613
  • Similar to EST: AW538516
    		•   AW538516  
    GeneNetwork    		       1
    6614
  • Similar to EST: CD776255
  • Transcribed locus
    		•   CD776255  
    GeneNetwork    		 397498 [**] 
    		   8 1
    6615
  • Similar to EST: CA527742
    		•   CA527742  
    GeneNetwork    		       1
    6616
  • Similar to EST: CA526435
  • Transcribed locus
    		•   CA526435  
    GeneNetwork    		 463710  
    		   18 1
    6617
  • Similar to EST: BF471915
  • Aldehyde dehydrogenase family 7, member A1
    		•   BF471915  
    GeneNetwork    		 30250 [**] 
    		   18 D3|18 29.0 cM 1
    6618
  • Similar to EST: CX205768
    		•   CX205768  
    GeneNetwork    		       1
    6619
  • Similar to EST: BQ566537
    		•   BQ566537  
    GeneNetwork    		       1
    6620
  • Similar to EST: BY718662
    		•   BY718662  
    GeneNetwork    		       1
    6621
  • Similar to EST: BG085108
    		•   BG085108  
    GeneNetwork    		       1
    6622
  • Similar to EST: BF719306
    		•   BF719306  
    GeneNetwork    		       1
    6623
  • Similar to EST: BP770677
  • Fusion, derived from t(12;16) malignant liposarcoma (human)
    		•   BP770677  
    GeneNetwork    		 277680 [**] 
    		   7 F3 1
    6624
  • Similar to EST: BE947515
  • Transcribed locus
    		•   BE947515  
    GeneNetwork    		 441715  
    		   5 1
    6625
  • Similar to EST: BQ566667
  • Erythroid differentiation regulator 1
    		•   BQ566667  
    GeneNetwork    		 391385 [**] 
    		     1
    6626
  • Similar to EST: CX242687
    		•   CX242687  
    GeneNetwork    		       1
    6627
  • Similar to EST: CX225221
  • RIKEN cDNA 4932442K08 gene
    		•   CX225221  
    GeneNetwork    		 35039 [**] 
    		   17 A2 1
    6628
  • Similar to EST: BM115080
  • Transcribed locus
    		•   BM115080  
    GeneNetwork    		 374527  
    		   2 1
    6629
  • Similar to EST: AW494980
  • Expressed sequence AW124847
    		• 107355
    		AW494980  
    GeneNetwork    		 384223  
    		   19 1
    6630
  • Similar to EST: BM937634
  • Transcribed locus
    		•   BM937634  
    GeneNetwork    		 409013  
    		   4 1
    6631
  • Similar to EST: CF553791
    		•   CF553791  
    GeneNetwork    		       1
    6632
  • Similar to EST: BQ555439
    		•   BQ555439  
    GeneNetwork    		       1
    6633
  • Similar to EST: BB324655
    		•   BB324655  
    GeneNetwork    		       1
    6634
  • Similar to EST: CX729476
  • RIKEN cDNA 2500002B13 gene
    		•   CX729476  
    GeneNetwork    		 426240  
    		   8 1
    6635
  • Similar to EST: CF553449
    		•   CF553449  
    GeneNetwork    		       1
    6636
  • Similar to EST: CB845986
  • Transcribed locus
    		•   CB845986  
    GeneNetwork    		 291158  
    		   10 1
    6637
  • Similar to EST: BB332869
    		•   BB332869  
    GeneNetwork    		       1
    6638
  • Similar to EST: BM934829
  • Transcribed locus
    		•   BM934829  
    GeneNetwork    		 413636  
    		   11 1
    6639
  • Similar to EST: AA726309
  • Serine (or cysteine) peptidase inhibitor, clade B, member 9
    		•   AA726309  
    GeneNetwork    		 272569  
    		   13 A3.3|13 12.4 cM 1
    6640
  • Similar to EST: CO428860
  • Septin 8
    		•   CO428860  
    GeneNetwork    		 274399  
    		   11 B1.3|11 28.75 cM 1
    6641
  • Similar to EST: CK376640
    		•   CK376640  
    GeneNetwork    		       1
    6642
  • Similar to EST: CB846711
  • Pleiotrophin
    		•   CB846711  
    GeneNetwork    		 279690 [**] 
    		   6 B1|6 13.5 cM 1
    6643
  • Similar to EST: BE948304
  • Aldehyde dehydrogenase family 7, member A1
    		•   BE948304  
    GeneNetwork    		 30250 [**] 
    		   18 D3|18 29.0 cM 1
    6644
  • Similar to EST: AV367615
    		•   AV367615  
    GeneNetwork    		       1
    6645
  • Similar to EST: BE655286
    		•   BE655286  
    GeneNetwork    		       1
    6646
  • Similar to EST: BY729890
  • Transcribed locus
    		•   BY729890  
    GeneNetwork    		 378148  
    		   14 1
    6647
  • 99% protein similarity to: Transmembrane protease, serine 9 (Polyserase-1) (Polyserine protease-1) (Polyserase-I) [Contains: Serase-1; Serase-2; Serase-3] (Similar to EST: AA184044)
  • Transmembrane protease, serine 9
    		•   AA184044  
    GeneNetwork    		 235302 [**] 
    		   10 C1 1
    6648
  • Similar to EST: BB637404
  • RIKEN cDNA I730030J21 gene
    		•   BB637404  
    GeneNetwork    		 123436  
    		   15 1
    6649
  • Similar to EST: AA111731
    		•   AA111731  
    GeneNetwork    		       1
    6650
  • Similar to EST: BI734445
    		•   BI734445  
    GeneNetwork    		       1
    6651
  • Similar to EST: CA872373
    		•   CA872373  
    GeneNetwork    		       1
    6652
  • Similar to EST: CX227176
  • Vacuolar protein sorting 72 (yeast)
    		•   CX227176  
    GeneNetwork    		 133919  
    		   3 F2 1
    6653
  • Similar to EST: CF746919
    		•   CF746919  
    GeneNetwork    		       1
    6654
  • Similar to EST: CX212697
  • DNA segment, Chr 14, ERATO Doi 449, expressed
    		•   CX212697  
    GeneNetwork    		 33344 [**] 
    		   14 B 1
    6655
  • Similar to EST: CN665929
    		•   CN665929  
    GeneNetwork    		       1
    6656
  • Similar to EST: BQ176172
  • RIKEN cDNA 4932442K08 gene
    		•   BQ176172  
    GeneNetwork    		 35039 [**] 
    		   17 A2 1
    6657
  • Similar to EST: BM229258
  • Transducin (beta)-like 1X-linked receptor 1
  • Transcribed locus
    		•   BM229258  
    GeneNetwork    		 202966 [**] 
    413501  
    		   3 A3
    3    		 1
    6658
  • Similar to EST: CN698779
    		•   CN698779  
    GeneNetwork    		       1
    6659
  • Similar to EST: BP767021
  • RIKEN cDNA 2610529C04 gene
  • Transcribed locus
    		•   BP767021  
    GeneNetwork    		 275943 [**] 
    464835  
    		   X D
    X    		 1
    6660
  • 93% protein similarity to: Sulf2_predicted protein [Rattus norvegicus] (Similar to EST: CA527537)
  • Sulfatase 2
    		•   CA527537  
    GeneNetwork    		 383702 [**] 
    		   2 H3 1
    6661
  • Similar to EST: CK337987
  • Transcribed locus
    		•   CK337987  
    GeneNetwork    		 446373  
    		   18 1
    6662
  • Similar to EST: AW494188
  • Serine (or cysteine) peptidase inhibitor, clade B, member 6a
  • RIKEN cDNA 1110046J04 gene
    		•   AW494188  
    GeneNetwork    		 252210 [**] 
    443347  
    		   13 A3.3|13 13.7 cM
    13 A3.3    		 1
    6663
  • Similar to EST: BE690925
  • RIKEN cDNA 2410187C16 gene
    		•   BE690925  
    GeneNetwork    		 26771 [**] 
    		   15 D2 1
    6664
  • Similar to EST: CN670146
    		•   CN670146  
    GeneNetwork    		       1
    6665
  • Similar to EST: CB337661
  • Peroxisomal biogenesis factor 12
    		•   CB337661  
    GeneNetwork    		 102205 [**] 
    		   11 C 1
    6666
  • Similar to EST: AA896084
    		•   AA896084  
    GeneNetwork    		       1
    6667
  • Similar to EST: BU057245
  • RIKEN cDNA A230106D06 gene
    		•   BU057245  
    GeneNetwork    		 458276 [**] 
    		   6 B2.3 1
    6668
  • Similar to EST: AW488209
  • RIKEN cDNA 2610207O16 gene
    		•   AW488209  
    GeneNetwork    		 383631  
    		   1 1
    6669
  • Similar to EST: BM125709
    		•   BM125709  
    GeneNetwork    		       1
    6670
  • Similar to EST: BU610083
  • ADP-ribosylation factor-like 5B
    		•   BU610083  
    GeneNetwork    		 174068 [**] 
    		   2 A2 1
    6671
  • Similar to EST: BE994610
  • General transcription factor II A, 1
  • RIKEN cDNA 6330549H03 gene
    		•   BE994610  
    GeneNetwork    		 275728  
    456492  
    		   12 E
    12    		 1
    6672
  • Similar to EST: CD554588
  • Ribonucleoprotein, PTB-binding 1
    		•   CD554588  
    GeneNetwork    		 432511  
    		   9 A3 1
    6673
  • Similar to EST: BI250116
    		•   BI250116  
    GeneNetwork    		       1
    6674
  • Similar to EST: BB623854
  • Predicted gene, ENSMUSG00000074574
    		•   BB623854  
    GeneNetwork    		 437256  
    		   2 1
    6675
  • Similar to EST: BF227924
  • Transcribed locus
    		•   BF227924  
    GeneNetwork    		 438339  
    		   6 1
    6676
  • Similar to EST: CN660034
    		•   CN660034  
    GeneNetwork    		       1
    6677
  • Similar to EST: CR514714
    		•   CR514714  
    GeneNetwork    		       1
    6678
  • Similar to EST: CB840723
  • Transcribed locus
  • Transcribed locus
  • Transcribed locus
  • Transcribed locus
    		•   CB840723  
    GeneNetwork    		 232551  
    386512  
    459886  
    464839  
    		   15
    9
    6
    2    		 1
    6679
  • Similar to EST: CD561124
  • RIKEN cDNA 9630025H16 gene
    		•   CD561124  
    GeneNetwork    		 31914  
    		   3 1
    6680
  • Similar to EST: BI649133
    		•   BI649133  
    GeneNetwork    		       1
    6681
  • Similar to EST: AW741107
    		•   AW741107  
    GeneNetwork    		       1
    6682
  • Similar to EST: CB182187
    		•   CB182187  
    GeneNetwork    		       1
    6683
  • Similar to EST: BU510721
    		•   BU510721  
    GeneNetwork    		       1
    6684
  • Similar to EST: AI789696
    		•   AI789696  
    GeneNetwork    		       1
    6685
  • Similar to EST: BQ563459
    		•   BQ563459  
    GeneNetwork    		       1
    6686
  • Similar to EST: BY269751
    		•   BY269751  
    GeneNetwork    		       1
    6687
  • Similar to EST: BY305404
    		•   BY305404  
    GeneNetwork    		       1
    6688
  • Similar to EST: CB318053
  • Transcribed locus, strongly similar to XP_001477531.1 PREDICTED: hypothetical protein [Mus musculus]
  • Transcribed locus, strongly similar to XP_001477531.1 PREDICTED: hypothetical protein [Mus musculus]
    		•   CB318053  
    GeneNetwork    		 418029  
    463724 [**] 
    		   3
    7    		 1
    6689
  • Similar to EST: BG083322
    		•   BG083322  
    GeneNetwork    		       1
    6690
  • Similar to EST: BY589531
    		•   BY589531  
    GeneNetwork    		       1
    6691
  • Similar to EST: BB867137
  • Tight junction protein 2
    		•   BB867137  
    GeneNetwork    		 104744 [**] 
    		   19 1
    6692
  • Similar to EST: CA535914
  • RIKEN cDNA 2310002J21 gene
    		•   CA535914  
    GeneNetwork    		 375091  
    		   19 D2 1
    6693
  • Similar to EST: CX216607
  • Transcribed locus
    		•   CX216607  
    GeneNetwork    		 39691  
    		   X 1
    6694
  • Similar to EST: BB556505
    		•   BB556505  
    GeneNetwork    		       1
    6695
  • Similar to EST: BB802368
    		•   BB802368  
    GeneNetwork    		       1
    6696
  • Similar to EST: CF104472
    		•   CF104472  
    GeneNetwork    		       1
    6697
  • Similar to EST: AI060449
  • Transcribed locus
    		•   AI060449  
    GeneNetwork    		 394699  
    		   10 1
    6698
  • Similar to EST: CX200007
  • Transcribed locus
    		•   CX200007  
    GeneNetwork    		 31757  
    		   8 1
    6699
  • Similar to EST: BQ563628
  • Pleiotrophin
    		•   BQ563628  
    GeneNetwork    		 279690 [**] 
    		   6 B1|6 13.5 cM 1
    6700
  • Similar to EST: CK345317
  • Transcribed locus
  • Transcribed locus, strongly similar to XP_920982.1 PREDICTED: similar to melanoma antigen [Mus musculus]
  • Transcribed locus
    		•   CK345317  
    GeneNetwork    		 418641  
    440911  
    463650  
    		   Y
    2
    11    		 1


    << Previous Page | Next Page >>
    1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84