NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
6501
  • Protein phosphatase 4, regulatory subunit 2
    		•     27223 [**] 
    465426 [**] 
    		   6 D3
    6 D3    		 1
    6502
  • 79% protein similarity to: nebulette [Homo sapiens]
  • Nebulette
    		•     440630  
    		   2 A2 1
    6503
  • Transcribed locus
    		•     313037  
    		   19 1
    6504
  • Transcribed locus
  • RIKEN cDNA 2610002J23 gene
    		•     391887  
    		   11 1
    6505
  • Unidentified gi75b03
  • Transcribed locus
    		•     434164  
    		   4 1
    6506
  • Unidentified gi75a01
  • DCP2 decapping enzyme homolog (S. cerevisiae)
    		•     87629  
    		   18 B3 1
    6507
  • Enabled homolog (Drosophila)
    		•           1
    6508
  • Collagen, type VIII, alpha 1
  • Transcribed locus
    		•     470908 [**] 
    		   16 1
    6509
  • Ankyrin 2, brain
  • Transcribed locus
    		•     447822  
    		   3 1
    6510
  • Gene model 525, (NCBI)
    		•     342127 [**] 
    		   11 C 1
    6511
  • 3'-phosphoadenosine 5'-phosphosulfate synthase 1
    		•     244912 [**] 
    		   3 G3|3 64.5 cM 1
    6512
  • Oxysterol binding protein-like 11
    		•     26564 [**] 
    		   16 B3 1
    6513
  • Zinc finger, AN1-type domain 6
    		•     209349 [**] 
    		   7 D3 1
    6514
  • N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
    		•     181862  
    		   18 D2 1
    6515
  • Transforming growth factor, beta induced
    		•     14455 [**] 
    		   13 38.0 cM 1
    6516
  • SH3 and PX domains 2B
    		•     227616  
    		   11 A4 1
    6517
  • Atonal homolog 8 (Drosophila)
    		•     87449  
    		   6 C1 1
    6518
  • A disintegrin and metallopeptidase domain 10
    		•     3037 [**] 
    		   9 D|9 41.0 cM 1
    6519
  • Preimplantation protein 4
    		•     211211 [**] 
    		   2 F3 1
    6520
  • Lin-52 homolog (C. elegans)
  • Transcribed locus
    		•     451615  
    		   12 1
    6521
  • ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
  • Transcribed locus
    		•     446914  
    		   4 1
    6522
  • Copine VIII
    		•           1
    6523
  • Cyclin-dependent kinase 7 (homolog of Xenopus MO15 cdk-activating kinase)
    		•           1
    6524
  • Transcribed locus
  • FK506 binding protein 1a
    		•     278458 [**] 
    		   2 G3 1
    6525
  • SAP30 binding protein
  • RIKEN cDNA 1110017F19 gene
    		•     441893  
    		   11 1
    6526
  • CAMP responsive element binding protein 3-like 2
    		•     169929 [**] 
    		   6 B1 1
    6527
  • Syntaxin binding protein 6 (amisyn)
    		•           1
    6528
  • RIKEN cDNA B230337E12 gene
    		•     130344  
    		   1 1
    6529
  • 6-pyruvoyl-tetrahydropterin synthase
    		•     35856  
    		   9 A5.3 1
    6530
  • NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13
  • Transcribed locus
    		•     408092  
    		   8 1
    6531
  • Capping protein (actin filament), gelsolin-like
    		•     18626 [**] 
    		   6 C3 1
    6532
  • Procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
    		•     79983 [**] 
    		   9 E3.3|9 52.0 cM 1
    6533
  • Unidentified gi28f10
  • Coiled-coil domain containing 134
    		•     440373  
    		   15 E1 1
    6534
  • RAB18, member RAS oncogene family
    		•     132802 [**] 
    		   18 A1|18 7.5 cM 1
    6535
  • Unidentified gi28b04
    		•           1
    6536
  • RAB21, member RAS oncogene family
  • Transcribed locus
    		•     392805  
    		   10 1
    6537
  • DNA segment, Chr 4, Wayne State University 53, expressed
    		•     331964 [**] 
    		   4 D3|4 65.7 cM 1
    6538
  • Voltage-dependent anion channel 2
    		•     262327 [**] 
    		   14 A3|14 2.5 cM 1
    6539
  • CAMP responsive element modulator
    		•     5244  
    		   18 A 1
    6540
  • Coagulation factor C homolog (Limulus polyphemus)
    		•     21325 [**] 
    		   12 C1|12 23.0 cM 1
    6541
  • RNA binding motif protein 18
    		•     205937 [**] 
    		   2 B 1
    6542
  • Lines homolog 2 (Drosophila)
    		•     289796  
    		   7 C 1
    6543
  • Unidentified gi16h06
  • Small nucleolar RNA host gene (non-protein coding) 8
    		•     379116  
    		   14 B 1
    6544
  • RIKEN cDNA 0610009O03 gene
    		•     34564 [**] 
    		   5 B2 1
    6545
  • S-phase kinase-associated protein 1A
    		•     42944 [**] 
    		   11 B1.3|11 31.0 cM 1
    6546
  • Muted
    		•     261554  
    		   13 A3.3|13 21.0 cM 1
    6547
  • Ubiquitin specific petidase 45
  • Transcribed locus
    		•     445421  
    		   4 1
    6548
  • Basigin
    		•     726 [**] 
    		   10 C1|10 42.4 cM 1
    6549
  • RIKEN cDNA 3222402P14 gene
  • Male-specific lethal 2-like 1 (Drosophila)
    		•     335386  
    436586 [**] 
    		   9 E4
    9 E4    		 1
    6550
  • Microtubule associated monoxygenase, calponin and LIM domain containing -like 1
    		•     196480  
    		   15 E1|15 46.6 cM 1
    6551
  • Unidentified gi26f06
  • Expressed sequence AW413774
    		•     442436  
    		   15 1
    6552
  • FYVE and coiled-coil domain containing 1
    		•     252941  
    		   9 F|9 71.3 cM 1
    6553
  • Ubiquitin-like modifier activating enzyme 1
    		•     1104 [**] 
    		   X A2-A3|X 5.7 cM 1
    6554
  • 95% protein similarity to: Txnip protein [Mus musculus]
  • Thioredoxin interacting protein
    		•     410189 [**] 
    		   3 47.1 cM 1
    6555
  • Proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
    		•     280013 [**] 
    		   1 C5 1
    6556
  • Unidentified gi23e09
  • Transcribed locus, moderately similar to XP_001491687.1 PREDICTED: similar to mitochondrial outer membrane protein 19 [Equus caballus]
    		•     372086  
    		   8 1
    6557
  • RIKEN cDNA D230025D16 gene
    		•     334761 [**] 
    		   8 D3 1
    6558
  • S100 calcium binding protein A16
    		•     331185 [**] 
    		   3 F1-F2 1
    6559
  • H1 histone family, member 0
    		•     24350 [**] 
    		   15 E1|15 46.75 cM 1
    6560
  • Neural precursor cell expressed, developmentally down-regulated gene 8
    		•     296566 [**] 
    		   14 C3|14 20.5 cM 1
    6561
  • Early endosome antigen 1
    		•     210035  
    		   10 C3 1
    6562
  • 94% protein similarity to: unnamed protein product [Mus musculus]
  • Eukaryotic translation initiation factor 2, subunit 2 (beta)
    		•     377134 [**] 
    		   2 H1|2 90.0 cM 1
    6563
  • RIKEN cDNA 2310047A01 gene
  • Transcribed locus
    		•     414359  
    		   14 1
    6564
  • Meningioma expressed antigen 5 (hyaluronidase)
    		•     122725  
    		   19 D1|19 45.1 cM 1
    6565
  • Peptidylprolyl isomerase A
    		•     5246 [**] 
    		   11 A1|11 1.0 cM 1
    6566
  • ORAI calcium release-activated calcium modulator 1
    		•     218582 [**] 
    		   5 F 1
    6567
  • Natural killer tumor recognition sequence
    		•     32842 [**] 
    		   9 F4|9 71.0 cM 1
    6568
  • Solute carrier family 38, member 1
    		•     103568  
    		   15 F1 1
    6569
  • Unidentified gi14g04
  • Matrilin 4
    		•     29428 [**] 
    		   2 H3|2 94.0 cM 1
    6570
  • Cysteine-rich secretory protein LCCL domain containing 2
    		•     264680  
    		   8 E1 1
    6571
  • Dullard homolog (Xenopus laevis)
    		•     41678 [**] 
    		   11 B4 1
    6572
  • NADH dehydrogenase (ubiquinone) Fe-S protein 7
    		•     28712 [**] 
    		   10 C1|10 43.0 cM 1
    6573
  • Progressive ankylosis
    		•           1
    6574
  • ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
    		•     238973 [**] 
    		   10 D3 1
    6575
  • Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
  • Transcribed locus
    		•     453970  
    		   5 1
    6576
  • Transformation related protein 63 regulated like
    		•     288737 [**] 
    		   4 E2 1
    6577
  • Mitochondrial ribosomal protein L28
    		•     273102  
    		   17 B1 1
    6578
  • Betacellulin, epidermal growth factor family member
  • Transcribed locus
    		•     449531  
    		   5 1
    6579
  • Mahogunin, ring finger 1
    		•     291326  
    		   16 A1|16 2.0 cM 1
    6580
  • Sphingosine kinase 2
  • Ribosomal protein L18
    		•     3459 [**] 
    		   7 B4 1
    6581
  • Unidentified gi11c11
  • Ribosomal protein L15
    		•     2050 [**] 
    		   14 A2|14 1
    6582
  • Unidentified gi10h02
  • Transcribed locus
    		•     450732  
    		   1 1
    6583
  • 86% protein similarity to: BLOCK 23 [Homo sapiens]
  • Transcribed locus, strongly similar to XP_950291.1 PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform 5 [Homo sapiens]
    		•     426257  
    		   13 1
    6584
  • F-box and leucine-rich repeat protein 11
    		•     31941 [**] 
    		   19 A 1
    6585
  • WD repeat domain, phosphoinositide interacting 1
    		•     35817 [**] 
    		   11 E1|11 68.0 cM 1
    6586
  • Nucleoporin 88
  • Rabaptin, RAB GTPase binding effector protein 1
    		•     7087 [**] 
    		   11 B3-B4|11 42.0 cM 1
    6587
  • Solute carrier family 9 (sodium/hydrogen exchanger), member 8
    		•     278924  
    		   2 H3 1
    6588
  • Zinc finger, MIZ-type containing 1
  • Predicted gene, ENSMUSG00000072684
    		•     392057  
    		   14 1
    6589
  • Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
    		•     294770  
    		   4 E2 1
    6590
  • Protein tyrosine phosphatase, non-receptor type 3
  • Transcribed locus
    		•     436925  
    		   4 1
    6591
  • Unidentified gi04d10
  • Expressed sequence AI661708
    		•     393514  
    		   5 1
    6592
  • Pyruvate dehydrogenase kinase, isoenzyme 1
  • Transcribed locus
    		•     460633  
    		   2 1
    6593
  • Hippocampus abundant transcript-like 1
  • Transcribed locus
    		•     407827  
    		   13 1
    6594
  • Unidentified gi01d10
  • Transcribed locus
  • Transcribed locus
    		•     442273  
    466980  
    		   14
    14    		 1
    6595
  • 87% protein similarity to: P-Rex2 protein [Homo sapiens] (Similar to EST: BM196792)
  • DEP domain containing 2
    		•   BM196792  
    GeneNetwork    		 123247  
    		   1 A3 1
    6596
  • Similar to EST: AW762912
    		•   AW762912  
    GeneNetwork    		       1
    6597
  • Similar to EST: BG873024
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
    		•   BG873024  
    GeneNetwork    		 29490 [**] 
    		   10 D3|10 70.0 cM 1
    6598
  • Similar to EST: AA547299
  • Protection of telomeres 1B
    		•   AA547299  
    GeneNetwork    		 177073  
    		   17 C 1
    6599
  • Similar to EST: CN673318
    		•   CN673318  
    GeneNetwork    		       1
    6600
  • Similar to EST: BB640985
    		•   BB640985  
    GeneNetwork    		       1


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