NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
6401
  • Expressed sequence AA409316
  • Transcribed locus
    		•     400905  
    		   15 1
    6402
  • RAB1B, member RAS oncogene family
    		•     182563 [**] 
    		   19 A 1
    6403
  • Phosphofurin acidic cluster sorting protein 2
    		•           1
    6404
  • Transcribed locus
    		•           1
    6405
  • Transducin (beta)-like 1 X-linked
    		•     258476 [**] 
    		   X B-C|X 30.9 cM 1
    6406
  • Transcribed locus, strongly similar to NP_001005765.1 Ras-related protein RAP-1A [Rattus norvegicus]
  • RAS-related protein-1a
    		•     458171 [**] 
    		   3 F2.2|3 48.5 cM 1
    6407
  • Transcribed locus
    		•     233951  
    		   1 1
    6408
  • WD repeat and FYVE domain containing 1
    		•     293273  
    		   1 C4 1
    6409
  • Signal peptide peptidase 3
    		•           1
    6410
  • Unidentified gi118b08
  • Expressed sequence C79267
    		•     30464  
    		   4 D3 1
    6411
  • Acetyl-Coenzyme A acetyltransferase 1
    		•     293233 [**] 
    		   9 30.0 cM 1
    6412
  • Heparan sulfate (glucosamine) 3-O-sulfotransferase 1
  • Transcribed locus, strongly similar to NP_034604.1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 [Mus musculus]
    		•     12559 [**] 
    470058 [**] 
    		   5 B3|5 22.0 cM
    5    		 1
    6413
  • Survival motor neuron domain containing 1
    		•     313687 [**] 
    		   19 D2 1
    6414
  • Syndecan 4
    		•     3815 [**] 
    		   2 H3|2 94.0 cM 1
    6415
  • Ribosomal protein S15
    		•     643 [**] 
    		   10 C1 1
    6416
  • Vacuolar protein sorting 13C (yeast)
    		•     241454  
    		   9 C 1
    6417
  • RAB3A interacting protein (rabin3)-like 1
    		•     281969 [**] 
    		   19 A 1
    6418
  • Transient receptor potential cation channel, subfamily M, member 3
    		•     131943  
    		   19 B 1
    6419
  • RIKEN cDNA 3300001P08 gene
    		•           1
    6420
  • Unidentified gi113b08
  • Solute carrier family 16 (monocarboxylic acid transporters), member 10
    		•     186778  
    		   10 B1 1
    6421
  • Transcribed locus, strongly similar to XP_001052054.1 PREDICTED: actin, gamma, cytoplasmic 1 [Mus musculus]
  • Transcribed locus, strongly similar to NP_571106.1 bactin1 [Danio rerio]
    		•     382956  
    		   8 1
    6422
  • Unidentified gi112c12
  • Zinc finger, CCHC domain containing 3
    		•     391810  
    		   2 H1 1
    6423
  • Unidentified gi112c06
  • Transducin (beta)-like 1X-linked receptor 1
    		•     441017  
    		   3 A3 1
    6424
  • Transcribed locus, moderately similar to XP_001066067.1 PREDICTED: hypothetical protein [Rattus norvegicus]
    		•     380256  
    		   2 1
    6425
  • Attractin
    		•     119936  
    		   2 F1|2 73.9 cM 1
    6426
  • Zinc finger, MYM-type 2
  • Transcribed locus, strongly similar to XP_224241.3 PREDICTED: similar to zinc finger protein 198 [Rattus norvegicus]
    		•     465322 [**] 
    		   14 1
    6427
  • Sulfatase 1
    		•           1
    6428
  • Coiled-coil domain containing 25
    		•           1
    6429
  • 92% protein similarity to: ENSANGP00000014430 [Anopheles gambiae str. PEST]
  • Ribosomal protein L23
    		•     140380 [**] 
    		   11 D|11 58.0 cM 1
    6430
  • Synaptosomal-associated protein 91
    		•           1
    6431
  • Development and differentiation enhancing
    		•     277236 [**] 
    		   15 D3 1
    6432
  • Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
  • Transcribed locus
    		•     157103  
    444131  
    		   7 F3
    7    		 1
    6433
  • Niemann Pick type C2
    		•     282556 [**] 
    		   12 D1 1
    6434
  • RIKEN cDNA 4933436C20 gene
    		•     86664  
    		   8 C5 1
    6435
  • Transmembrane and coiled-coil domains 7
    		•     87151  
    		   8 D3 1
    6436
  • Unidentified gi104h03
    		•           1
    6437
  • Unidentified gi104f04
  • Ribosomal protein S4, X-linked
    		•     66 [**] 
    		   X D|X 39.0 cM 1
    6438
  • Solute carrier family 44, member 1
    		•     270088 [**] 
    439778  
    		   4 B2
    4 B2    		 1
    6439
  • Dual specificity phosphatase 19
    		•     306818  
    		   2 C3 1
    6440
  • FK506 binding protein 3
    		•     28480  
    		   12 C3 1
    6441
  • Unidentified gi103d02
  • EH-domain containing 3
  • RIKEN cDNA 1810013L24 gene
    		•     18526 [**] 
    426413  
    		   17 43.25 cM
    16 A3    		 1
    6442
  • GATA binding protein 3
    		•           1
    6443
  • Unidentified gi102h02
  • Transcribed locus
    		•     449255  
    		   6 1
    6444
  • Leucine-rich repeats and calponin homology (CH) domain containing 3
  • IQ motif containing G
    		•     227918  
    470035  
    		   16 B3
    16 B3    		 1
    6445
  • Ubiquitin specific peptidase 7
    		•     295330 [**] 
    		   16 A1 1
    6446
  • Interleukin 6 signal transducer
  • Transcribed locus
  • Transcribed locus
    		•     407973  
    413786  
    		   13
    13    		 1
    6447
  • Transcription factor 4
  • Transcribed locus
    		•     406251  
    		   18 1
    6448
  • RIKEN cDNA 2610024B07 gene
  • Transcribed locus
    		•     24685 [**] 
    413640  
    		   7 E3
    7    		 1
    6449
  • Heparan sulfate 2-O-sulfotransferase 1
    		•           1
    6450
  • Secreted phosphoprotein 1
    		•     288474 [**] 
    		   5 E5|5 56.0 cM 1
    6451
  • Unidentified gi99e02
  • Transcribed locus
    		•     395970  
    		   12 1
    6452
  • Unidentified gi99d06
  • Fibroblast growth factor 11
    		•     269011  
    		   11 B4 1
    6453
  • Unidentified gi98h09
  • Transcribed locus
  • Transcribed locus
    		•     446107  
    451524  
    		   1
    1    		 1
    6454
  • Unidentified gi98g08
  • Zinc finger protein 536
    		•     378309  
    		   7 B2 1
    6455
  • Transcribed locus
    		•           1
    6456
  • LIM domains containing 1
    		•     10987 [**] 
    		   9 F|9 70.7 cM 1
    6457
  • Unidentified gi95g01
  • RIKEN cDNA D430040D24 gene
    		•     392372  
    		   1 B 1
    6458
  • EFR3 homolog A (S. cerevisiae)
    		•     260647 [**] 
    		   15 D1 1
    6459
  • RIKEN cDNA 2010317E24 gene
    		•     250293  
    		   2 A3 1
    6460
  • POU domain, class 3, transcription factor 4
    		•     56946 [**] 
    		   X E1|X 48.4 cM 1
    6461
  • Unidentified gi94e06
  • Ribosomal protein S28
  • Ribosomal protein S28
  • RIKEN cDNA 1700008B15 gene
    		•     371603  
    393918  
    463309  
    		   17 B1
    17 B1
    4 A5    		 1
    6462
  • WW, C2 and coiled-coil domain containing 2
  • Transcribed locus
    		•     450947  
    		   8 1
    6463
  • Ets variant gene 6 (TEL oncogene)
    		•           1
    6464
  • Unidentified gi94a04
  • Spermatogenesis associated 1
    		•     383235  
    		   3 H2 1
    6465
  • Transcribed locus
    		•     258498  
    		   6 1
    6466
  • Unidentified gi93h08
  • CAAX box 1 homolog A (human)
    		•     391252 [**] 
    		   X A5 1
    6467
  • Fibrillin 2
    		•     20271 [**] 
    		   18 D-E1|18 29.0 cM 1
    6468
  • Exocyst complex component 5
    		•     31607 [**] 
    		   14 C1 1
    6469
  • Acyl-CoA synthetase long-chain family member 3
  • Transcribed locus
    		•     451628  
    		   1 1
    6470
  • Unidentified gi92g09
    		•           1
    6471
  • CDK5 regulatory subunit associated protein 2
  • Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
  • Transcribed locus, strongly similar to NP_006817.1 tyrosine 3/tryptophan 5 -monooxygenase activation protein, theta polypeptide [Homo sapiens]
    		•     289630 [**] 
    460968  
    		   12 A1.3
    4    		 1
    6472
  • Nucleoporin 155
    		•     295168  
    		   15 A2 1
    6473
  • Bromodomain and WD repeat domain containing 1
    		•     240871 [**] 
    		   16 C4 1
    6474
  • NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
  • Nuclear receptor subfamily 2, group C, member 1
    		•     107483  
    		   10 C2|10 52.0 cM 1
    6475
  • Unidentified gi90f07
  • Limb region 1 like
    		•     385020  
    		   15 F1|15 60.4 cM 1
    6476
  • Unidentified gi90f04
  • Leucine rich repeat containing 58
    		•     390882 [**] 
    		   16 B3 1
    6477
  • CD 81 antigen
    		•     806 [**] 
    		   7 F5|7 69.3 cM 1
    6478
  • ATPase family, AAA domain containing 3A
  • Transcribed locus
    		•     448901  
    		   4 1
    6479
  • Signal sequence receptor, gamma
    		•     232728 [**] 
    		   3 E1 1
    6480
  • DNA segment, Chr 4, ERATO Doi 22, expressed
    		•           1
    6481
  • Unidentified gi89g04
  • HLA-B-associated transcript 1A
    		•     439827 [**] 
    		   17 B1|17 19.12 cM 1
    6482
  • Peptidylprolyl isomerase D (cyclophilin D)
    		•     295252 [**] 
    		   3 F1 1
    6483
  • CDNA sequence BC030336
    		•     276479  
    		   7 F2 1
    6484
  • OTU domain containing 7B
    		•           1
    6485
  • DIP2 disco-interacting protein 2 homolog C (Drosophila)
  • Transcribed locus
    		•     451954  
    		   13 1
    6486
  • RIKEN cDNA 1700123O20 gene
    		•     197509 [**] 
    		   14 C3 1
    6487
  • Electron transferring flavoprotein, beta polypeptide
    		•     30200 [**] 
    		   7 B2|7 23.0 cM 1
    6488
  • RIKEN cDNA 1700085B03 gene
  • Transmembrane protein 132C
    		•     444235 [**] 
    		   5 G1.2 1
    6489
  • A kinase (PRKA) anchor protein (gravin) 12
    		•     27481 [**] 
    		   10 A1 1
    6490
  • Serologically defined colon cancer antigen 10
    		•           1
    6491
  • Phosphotriesterase related
    		•     288713  
    		   2 A1 1
    6492
  • 84% protein similarity to: acidic ribosomal phosphoprotein P1 [Homo sapiens]
  • Ribosomal protein, large, P1
    		•     3158 [**] 
    		   9 B 1
    6493
  • Cyclin D1
    		•     273049 [**] 
    		   7 F5|7 72.3 cM 1
    6494
  • Epithelial membrane protein 1
    		•     182785 [**] 
    		   6 G1|6 65.0 cM 1
    6495
  • Cytidylate kinase
    		•     294159  
    		   4 C7 1
    6496
  • COMM domain containing 3
    		•     249586 [**] 
    		   2 A3|2 9.0 cM 1
    6497
  • Nance-Horan syndrome (human)
    		•     336313  
    		   X F4|X 68.0 cM 1
    6498
  • Heat shock protein 12B
    		•     277465 [**] 
    		   2 F3 1
    6499
  • Ribosomal protein L21
    		•     371575  
    		   5 G3 1
    6500
  • Unidentified gi78a02
    		•           1


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