NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
6301
  • Pam, highwire, rpm 1
  • Transcribed locus
    		•     405495  
    		   14 1
    6302
  • SET binding protein 1
    		•           1
    6303
  • Cyclin-dependent kinase 8
    		•           1
    6304
  • Peptidylglycine alpha-amidating monooxygenase
    		•     441453 [**] 
    		   1 D|1 57.5 cM 1
    6305
  • Unidentified gi172c01
  • Transcribed locus
    		•     451773  
    		   12 1
    6306
  • Bardet-Biedl syndrome 5 (human)
    		•     252136 [**] 
    		   2 C3 1
    6307
  • Fat mass and obesity associated
  • PREDICTED: Mus musculus hypothetical protein LOC100041254 (LOC100041254), mRNA
    		•     464228  
    		   8 C5 1
    6308
  • Forkhead box N3
  • Transcribed locus
    		•     391823  
    		   12 1
    6309
  • Friend leukemia integration 1
    		•           1
    6310
  • Growth factor receptor bound protein 10
    		•     273117 [**] 
    		   11 A1|11 8.0 cM 1
    6311
  • Unidentified gi169e12
  • DIP2 disco-interacting protein 2 homolog B (Drosophila)
    		•     243658  
    		   15 F1 1
    6312
  • Glutamate-cysteine ligase, catalytic subunit
    		•     89888 [**] 
    		   9 D-E|9 42.0 cM 1
    6313
  • Ubiquitin protein ligase E3A
    		•           1
    6314
  • Unidentified gi169a05
  • Sodium leak channel, non-selective
  • Transcribed locus
    		•     255348 [**] 
    427026  
    		   14 E5
    14    		 1
    6315
  • Protein arginine N-methyltransferase 5
    		•     196585 [**] 
    		   14 1
    6316
  • Nucleoporin like 1
  • CDNA sequence BC010981
    		•     440433  
    		   14 1
    6317
  • RIKEN cDNA 4930535B03 gene
    		•     196275  
    		   3 F2 1
    6318
  • Talin 2
    		•     33645  
    		   9 C 1
    6319
  • Cysteine rich transmembrane BMP regulator 1 (chordin like)
    		•           1
    6320
  • Calcium binding protein 39-like
    		•     179091 [**] 
    		   14 C3-D1 1
    6321
  • N-myristoyltransferase 1
  • Transcribed locus
    		•     391645  
    		   11 1
    6322
  • Unidentified gi164c10
  • Cell cycle associated protein 1
    		•     427589 [**] 
    		   2 E2 1
    6323
  • Neural precursor cell expressed, developmentally down-regulated gene 4-like
  • Transcribed locus
    		•     395826  
    		   18 1
    6324
  • CLPTM1-like
    		•     30099  
    		   13 C1 1
    6325
  • Potassium voltage-gated channel, shaker-related subfamily, member 1
    		•     40424 [**] 
    		   6 F1-F3|6 61.0 cM 1
    6326
  • Lysosomal-associated protein transmembrane 4A
    		•     30071 [**] 
    		   12 A1.1 1
    6327
  • Synovial sarcoma translocation, Chromosome 18
  • Transcribed locus
    		•     451423  
    		   18 1
    6328
  • Opioid growth factor receptor-like 1
    		•           1
    6329
  • RAB6B, member RAS oncogene family
    		•     335395  
    		   9 F1|9 56.0 cM 1
    6330
  • SLIT-ROBO Rho GTPase activating protein 2
    		•     276259  
    		   1 E4 1
    6331
  • Trinucleotide repeat containing 6C
    		•     40272 [**] 
    		   11 E2 1
    6332
  • Phosphorylase kinase alpha 2
  • Transcribed locus
    		•     441031  
    		   X 1
    6333
  • Iduronate 2-sulfatase
    		•     233083  
    		   X A7.1|X 27.0 cM 1
    6334
  • Resistance to inhibitors of cholinesterase 8 homolog (C. elegans)
  • Blocked early in transport 1 homolog (S. cerevisiae)-like
    		•     155696 [**] 
    		   7 F5 1
    6335
  • MAP/microtubule affinity-regulating kinase 2
    		•     258986 [**] 
    		   19 B|19 3.0 cM 1
    6336
  • Syntaxin 6
    		•           1
    6337
  • Mesenchyme homeobox 2
  • Transcribed locus
    		•     451636  
    		   12 1
    6338
  • Phospholipase A2, activating protein
    		•     22724  
    		   4 C5|4 44.5 cM 1
    6339
  • Myosin IXa
  • Transcribed locus
    		•     450079  
    		   9 1
    6340
  • Unidentified gi153h06
  • Expressed sequence AI413908
    		•     458352  
    		   9 1
    6341
  • Unidentified gi153h01
  • Transcribed locus
    		•     441722  
    		   11 1
    6342
  • Peroxidasin homolog (Drosophila)
    		•     251774 [**] 
    		   12 A2 1
    6343
  • Solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
    		•     16228 [**] 
    		   8 B1.1|8 26.0 cM 1
    6344
  • Recombination signal binding protein for immunoglobulin kappa J region
    		•           1
    6345
  • Dual specificity phosphatase 16
    		•           1
    6346
  • RIKEN cDNA 1500005K14 gene
    		•     34131 [**] 
    		   11 B4 1
    6347
  • Thymosin, beta 4, X chromosome
    		•     142729 [**] 
    		   X F5|X 72.5 cM 1
    6348
  • Phosphodiesterase 9A
    		•           1
    6349
  • Unidentified gi151c08
  • Transcribed locus
    		•     416608  
    		   4 1
    6350
  • Cell adhesion molecule-related/down-regulated by oncogenes
    		•           1
    6351
  • Unidentified gi150d07
    		•           1
    6352
  • SUB1 homolog (S. cerevisiae)
  • Transcribed locus
    		•     41746 [**] 
    443346  
    		   15 A2
    2    		 1
    6353
  • Unidentified gi149a03
    		•           1
    6354
  • Ankyrin repeat domain 13c
    		•     265806 [**] 
    		   3 H4 1
    6355
  • N-ethylmaleimide sensitive fusion protein attachment protein alpha
    		•     104540  
    		   7 A2|7 15.2 cM 1
    6356
  • Sprouty protein with EVH-1 domain 1, related sequence
    		•     392720  
    392726  
    		   2 E5
    2 E5    		 1
    6357
  • Glucosamine-6-phosphate deaminase 2
    		•     33830 [**] 
    		   5 D 1
    6358
  • Protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
    		•     260288 [**] 
    		   11 B1.3 1
    6359
  • Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
    		•     45565  
    		   10 D2 1
    6360
  • RIKEN cDNA 2900024C23 gene
    		•           1
    6361
  • Heterogeneous nuclear ribonucleoprotein H2
    		•     315909 [**] 
    		   X E3 1
    6362
  • Proteasome (prosome, macropain) subunit, beta type 2
    		•           1
    6363
  • RIKEN cDNA 5730470L24 gene
  • Transcribed locus
    		•     441991  
    		   3 1
    6364
  • Ribosomal protein L30
    		•     358632 [**] 
    		   15 B3.1|15 14.7 cM 1
    6365
  • Unidentified gi139d09
  • Zinc finger protein 800
    		•     84441  
    		   6 A3.2 1
    6366
  • RIKEN cDNA 1700015H07 gene
    		•           1
    6367
  • Transcribed locus
  • RIKEN cDNA D230012E17 gene
    		•     392520 [**] 
    		   1 C1.1 1
    6368
  • Expressed sequence AI467657
  • Zinc finger and BTB domain containing 16
    		•     457803  
    		   9 A5.3|9 23.0 cM 1
    6369
  • Forkhead box C1
    		•     12949 [**] 
    		   13 A3.2|13 20.0 cM 1
    6370
  • RIKEN cDNA 2900019G14 gene
    		•     267547 [**] 
    		   2 1
    6371
  • Unidentified gi137b12
  • Transcribed locus
    		•     403266  
    		   12 1
    6372
  • RIKEN cDNA 1110033M05 gene
    		•           1
    6373
  • Purine rich element binding protein B
    		•     296150 [**] 
    		   11 A1|11 3.0 cM 1
    6374
  • Metaxin 3
    		•     296770  
    		   13 C3 1
    6375
  • Ubiquitin specific peptidase 36
    		•     232293 [**] 
    		   11 E2 1
    6376
  • Phosphodiesterase 4B, cAMP specific
    		•           1
    6377
  • 2-oxoglutarate and iron-dependent oxygenase domain containing 2
  • Transcribed locus
    		•     392231  
    		   5 1
    6378
  • Transthyretin
    		•           1
    6379
  • Unidentified gi132f08
  • Retinoblastoma binding protein 9
    		•     440564  
    		   2 G1-H1 1
    6380
  • Superoxide dismutase 1, soluble
  • Transcribed locus, strongly similar to NP_849254.2 splicing factor, arginine/serine-rich 15 [Mus musculus]
    		•     459038  
    		   16 1
    6381
  • Reticulon 4 receptor-like 1
    		•     82661  
    		   11 B5 1
    6382
  • RIKEN cDNA 4931414P19 gene
  • Apoptotic chromatin condensation inducer 1
    		•     297078 [**] 
    		   14 C3 1
    6383
  • Tectorin alpha
    		•     42209 [**] 
    		   9 A5.1|9 25.0 cM 1
    6384
  • Lamin B2
    		•     7362 [**] 
    		   10 C|10 43.0 cM 1
    6385
  • Actin related protein 2/3 complex, subunit 2
    		•     337038 [**] 
    		   1 C3|1 40.3 cM 1
    6386
  • Eukaryotic translation elongation factor 1 alpha 1
  • Transcribed locus, strongly similar to NP_989488.2 eukaryotic translation elongation factor 1 alpha 1 [Gallus gallus]
    		•     335315 [**] 
    379939 [**] 
    		   9 E1
    1    		 1
    6387
  • Unidentified gi126e06
    		•           1
    6388
  • Ninein
    		•           1
    6389
  • DC-STAMP domain containing 1
  • Transcribed locus
    		•     437698  
    		   3 1
    6390
  • Kinesin family member 3C
    		•     415417  
    		   12 A1.1|12 4.0 cM 1
    6391
  • RIKEN cDNA 1700021K19 gene
    		•     327319  
    		   16 B3 1
    6392
  • Solute carrier family 16 (monocarboxylic acid transporters), member 10
    		•           1
    6393
  • Myristoylated alanine rich protein kinase C substrate
    		•     30059 [**] 
    		   10 B1|10 22.0 cM 1
    6394
  • Unidentified gi122c02
    		•           1
    6395
  • Transcribed locus
    		•     244101  
    		   14 1
    6396
  • Protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein, alpha 1
    		•           1
    6397
  • Unidentified gi121d07
  • Transcribed locus
    		•     404596  
    		   11 1
    6398
  • Unidentified gi120g06
  • Eukaryotic translation initiation factor 3, subunit G
    		•     427309 [**] 
    		   9 A3 1
    6399
  • Transcribed locus
    		•     337965  
    		   1 1
    6400
  • Nuclear receptor co-repressor 1
    		•     271814 [**] 
    		   11 B2 1


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