2001 December 1 issue of Nucleic Acids Research Copyright © 2001 Oxford University Press. |
baseflip: Strong Minor Groove Base Conservation in Sequence Logos implies DNA Distortion or Base Flipping during Replication and Transcription Initiation |
@article{Schneider.baseflip.2001, author = "T. D. Schneider", title = "Strong Minor Groove Base Conservation in Sequence Logos implies {DNA} Distortion or Base Flipping during Replication and Transcription Initiation", comment = "baseflip.tex, journal cover!", journal = "Nucl. Acid Res.", volume = "29", number = "23", pages = "4881-4891", year = "2001"}
Direct access to the paper baseflip at Nucleic Acids Research. (This requires a subscription.)
Companion paper: repan3
Delila instructions for each analysis provide you with a precise way to reproduce the analysis:
If you need background information about information theory you can explore my web site. You may find these two resources particularly useful:
Genome-wide identification of replication origins in yeast by comparative genomics Conrad A. Nieduszynski, Yvonne Knox and Anne D. Donaldson GENES & DEVELOPMENT 20:1874-1879, 2006.They used sequence logos to analyze replication origins. Their results are similar to figure 5D.
Schneider Lab
origin: 2001 Jan 22
updated: 2006 Aug 04