NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
6001
  • Transmembrane protein 126A
    		•     28963  
    		   7 E1 1
    6002
  • Expressed sequence AW214353
    		•     391877  
    		   18 1
    6003
  • Pellino 2
    		•     296457  
    		   14 C1|14 16.5 cM 1
    6004
  • A kinase (PRKA) anchor protein 8-like
  • RIKEN cDNA A630049H14 gene
    		•     445318  
    		   17 1
    6005
  • Glycosyltransferase 25 domain containing 1
    		•     273836 [**] 
    		   8 B3.3 1
    6006
  • Protein kinase, X-linked
    		•     290338  
    		   X A7.3 1
    6007
  • Laminin, alpha 3
    		•     42012  
    		   18 A|18 3.0 cM 1
    6008
  • ADP-ribosylation factor-like 6 interacting protein 5
  • Transcribed locus
    		•     412776  
    		   6 1
    6009
  • Potassium channel, subfamily K, member 2
  • PREDICTED: Mus musculus similar to TF-1 apoptosis related protein 19 (LOC100042424), mRNA
    		•     440265  
    		   1 H6 1
    6010
  • Fas-associated factor 1
    		•           1
    6011
  • Purkinje cell protein 4-like 1
    		•     198138 [**] 
    		   1 H3 1
    6012
  • 91% protein similarity to: ribosomal protein S6 [synthetic construct]
  • Ribosomal protein S6
    		•     425090 [**] 
    		   4 C3 1
    6013
  • RAB10, member RAS oncogene family
    		•     378993 [**] 
    		   12 A1.1|12 2.0 cM 1
    6014
  • Rho GTPase activating protein 10
    		•     165974  
    		   8 C2 1
    6015
  • Fragile X mental retardation gene 1, autosomal homolog
    		•           1
    6016
  • Poly (A) polymerase alpha
    		•     255877 [**] 
    		   12 F1 1
    6017
  • RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
    		•     871  
    		   11 E2|11 75.0 cM 1
    6018
  • Microtubule-associated protein, RP/EB family, member 2
    		•     132237  
    		   18 A2 1
    6019
  • Lectin, mannose-binding, 1
    		•     290857 [**] 
    		   18 E1 1
    6020
  • RAB6, member RAS oncogene family
    		•     28650 [**] 
    		   7 C4 1
    6021
  • Solute carrier family 25, member 39
    		•     44226 [**] 
    		   11 D|11 60.0 cM 1
    6022
  • Expressed sequence AI426330
    		•     33776  
    		   7 1
    6023
  • Unidentified gi46a04
    		•           1
    6024
  • AT rich interactive domain 1B (Swi1 like)
  • Transcribed locus
    		•     453425  
    		   17 1
    6025
  • Crystallin, lambda 1
    		•     25539 [**] 
    		   14 C3|14 20.0 cM 1
    6026
  • FUS interacting protein (serine-arginine rich) 1
    		•     10229 [**] 
    		   4 D3 1
    6027
  • 86% protein similarity to: melanoma inhibitory activity 1 [Mus musculus]
  • Melanoma inhibitory activity 1
    		•     262447 [**] 
    		   7 A3|7 1.9 cM 1
    6028
  • Tubulin, alpha 1C
  • Transcribed locus, strongly similar to XP_947698.1 PREDICTED: similar to Tubulin alpha-3 chain (Alpha-tubulin 3) [Homo sapiens]
    		•     466291  
    88212  
    		   15
    15 F1    		 1
    6029
  • Sno, strawberry notch homolog 1 (Drosophila)
    		•     23879  
    		   5 F 1
    6030
  • Phosphatidylinositol transfer protein, alpha
    		•     3128 [**] 
    		   11 B5|11 44.11 cM 1
    6031
  • Unidentified gi42d10
  • Transcribed locus, weakly similar to XP_001006487.1 PREDICTED: hypothetical protein [Mus musculus]
    		•     441229  
    		   10 1
    6032
  • Inhibitor of growth family, member 3
    		•     39999 [**] 
    		   6 A3 1
    6033
  • RAB14, member RAS oncogene family
    		•     198264 [**] 
    		   2 B 1
    6034
  • BTB (POZ) domain containing 9
    		•     353321  
    		   17 B1 1
    6035
  • UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
    		•     439760 [**] 
    		   2 C3 1
    6036
  • Predicted gene, EG667682
  • Ribosomal protein L31
    		•     285021  
    379302 [**] 
    		   15 E3
    1 B    		 1
    6037
  • Protein tyrosine phosphatase, receptor type, F
    		•     29855 [**] 
    		   4 C6-D1 1
    6038
  • C-type lectin domain family, member l
    		•     349066 [**] 
    		   6 B1 1
    6039
  • RIKEN cDNA 2700089E24 gene
    		•     291762 [**] 
    		   6 G1 1
    6040
  • Ribosomal protein 10
    		•     100113 [**] 
    		   X A7.3|X 29.82 cM 1
    6041
  • Transcribed locus
    		•           1
    6042
  • Neuraminidase 1
    		•     8856 [**] 
    		   17 B1|17 18.93 cM 1
    6043
  • RIKEN cDNA A730020M07 gene
    		•     65320 [**] 
    		   3 G1 1
    6044
  • C1q and tumor necrosis factor related protein 1
    		•     23845 [**] 
    		   11 E2 1
    6045
  • Collagen, type XI, alpha 1
    		•     209715 [**] 
    		   3 F3|3 53.1 cM 1
    6046
  • Tensin 1
    		•           1
    6047
  • Unidentified gi37c09
    		•           1
    6048
  • Ribosomal protein S25
    		•     292027 [**] 
    		   9 A5.2 1
    6049
  • Pyrroline-5-carboxylate reductase family, member 2
    		•     274180 [**] 
    		   1 H5 1
    6050
  • Transcription elongation factor B (SIII), polypeptide 1
    		•     289248 [**] 
    		   1 A3 1
    6051
  • Unidentified gi35c04
  • Integrin beta 3
    		•     87150  
    		   11 E1|11 68.0 cM 1
    6052
  • ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
    		•     371641  
    		   11 E2 1
    6053
  • Aminolevulinate, delta-, dehydratase
    		•     6988 [**] 
    		   4 B3|4 30.6 cM 1
    6054
  • Actin related protein 2/3 complex, subunit 5
    		•     288974 [**] 
    		   1 A3 1
    6055
  • Zinc finger protein 654
    		•     25960  
    		   16 C1.3 1
    6056
  • ADP-ribosylation factor interacting protein 1
  • Transcribed locus
    		•     316536 [**] 
    465877 [**] 
    		   3 F1
    3    		 1
    6057
  • Rho guanine nucleotide exchange factor (GEF) 3
  • Transcribed locus
    		•     446860  
    		   14 1
    6058
  • Peptidylprolyl isomerase (cyclophilin)-like 1
    		•     328928  
    		   17 A3.3 1
    6059
  • Tropomyosin 1, alpha
    		•     121878 [**] 
    		   9 C|9 40.0 cM 1
    6060
  • 89% protein similarity to: ribosomal protein L14 [Mus musculus]
  • Hypothetical protein LOC100040970
    		•     425436 [**] 
    		   7 B4 1
    6061
  • FXYD domain-containing ion transport regulator 6
    		•     208287 [**] 
    		   9 A5.2 1
    6062
  • Integrator complex subunit 6
    		•     319684 [**] 
    		   14 C3 1
    6063
  • Unidentified gi32e06
  • Glyceraldehyde-3-phosphate dehydrogenase
  • Glyceraldehyde-3-phosphate dehydrogenase
  • Glyceraldehyde-3-phosphate dehydrogenase
    		•     304088  
    309092  
    343110 [**] 
    		   6 F2
    6 F2
    6 F2    		 1
    6064
  • SH3 domain protein D19
    		•           1
    6065
  • Mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)
    		•     46424  
    		   11 B3 1
    6066
  • Thymosin, beta 10
    		•     3532 [**] 
    		   6 C1 1
    6067
  • Unidentified gi31h08
  • Transcribed locus
    		•     458214  
    		   13 1
    6068
  • Myelin protein zero-like 3
    		•     49611  
    		   9 A5.2 1
    6069
  • Phospholipase C, gamma 1
    		•     44463  
    		   2 H2|2 92.0 cM 1
    6070
  • WD repeat domain 42A
    		•     159915 [**] 
    		   1 H3 1
    6071
  • Eukaryotic translation elongation factor 1 alpha 1
  • Transcribed locus, strongly similar to NP_989488.2 eukaryotic translation elongation factor 1 alpha 1 [Gallus gallus]
    		•     335315 [**] 
    379939 [**] 
    		   9 E1
    1    		 1
    6072
  • CXXC finger 6
  • Transcribed locus
    		•     249744  
    465484  
    		   10 B4|10 32.0 cM
    10    		 1
    6073
  • Unidentified gi31a12
  • Activating transcription factor 7
    		•     208714 [**] 
    		   15 F3 1
    6074
  • 88% protein similarity to: lactate dehydrogenase B [Bos taurus]
  • Lactate dehydrogenase B
    		•     9745 [**] 
    		   6 G2|6 62.0 cM 1
    6075
  • Calpain 2
    		•     19306 [**] 
    		   1 H5 1
    6076
  • SAPS domain family, member 2
    		•           1
    6077
  • Chromobox homolog 6
    		•           1
    6078
  • Nephroblastoma overexpressed gene
    		•     5167 [**] 
    		   15 D1|15 22.5 cM 1
    6079
  • Son of sevenless homolog 2 (Drosophila)
    		•           1
    6080
  • Platelet derived growth factor receptor, alpha polypeptide
    		•           1
    6081
  • Arginine/serine-rich coiled-coil 1
    		•           1
    6082
  • PREDICTED: Mus musculus similar to EID-2-like inhibitor of differentiation-3 (LOC434156), mRNA
  • Transcribed locus
    		•     395381  
    		   7 1
    6083
  • TBC1 domain family, member 10a
    		•     28140  
    		   11 A1 1
    6084
  • Glutamine-rich 1
    		•     335449  
    		   9 F2 1
    6085
  • Transcribed locus
    		•           1
    6086
  • SEC63-like (S. cerevisiae)
  • Transcribed locus
    		•     450100  
    		   10 1
    6087
  • RIKEN cDNA E030018N11 gene
    		•     323386 [**] 
    		   7 F1 1
    6088
  • Unidentified gi04a01
  • Predicted gene, ENSMUSG00000073237
    		•     450225  
    		   12 1
    6089
  • Transmembrane protein 136
  • Transcribed locus
    		•     414145  
    		   9 1
    6090
  • Unidentified gi03g05
  • Transcribed locus
    		•     451585  
    		   3 1
    6091
  • Transcribed locus
    		•     100023  
    234011  
    		   8
    8    		 1
    6092
  • Neighbor of Brca1 gene 1
  • Transcribed locus
    		•     451580  
    		   11 1
    6093
  • Unidentified gi02e06
  • Glutathione transferase zeta 1 (maleylacetoacetate isomerase)
    		•     29652 [**] 
    		   12 E 1
    6094
  • Unidentified gi01e12
  • CASP8 and FADD-like apoptosis regulator
    		•     336848 [**] 
    		   1 C1.3|1 30.1 cM 1
    6095
  • RIKEN cDNA 1110029I05 gene
  • Transcribed locus, strongly similar to XP_001473237.1 PREDICTED: hypothetical protein [Mus musculus]
    		•     393523  
    		   9 1
    6096
  • Protein kinase inhibitor, gamma
    		•           1
    6097
  • Iroquois related homeobox 3 (Drosophila)
    		•     238044 [**] 
    		   8 C5|8 42.1 cM 1
    6098
  • PREDICTED: Mus musculus similar to SEC61 gamma (LOC100043039), mRNA
  • NIPA-like domain containing 3
    		•     26548  
    		   4 D3 1
    6099
  • DNA segment, Chr 10, Brigham & Women's Genetics 1364 expressed
    		•     29802 [**] 
    		   10 C1|10 43.0 cM 1
    6100
  • Zinc finger protein X-linked
    		•           1


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