NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
6201
  • Retinoic acid induced 14
  • Transcribed locus
    		•     451693  
    		   15 1
    6202
  • Unidentified gi221c01
  • Myotubularin related protein 7
    		•     383205 [**] 
    		   8 B1.2 1
    6203
  • WD repeat domain 26
  • Cytochrome c oxidase, subunit VIIIa
  • Transcribed locus, moderately similar to NP_599172.1 cytochrome c oxidase, subunit VIIIa [Rattus norvegicus]
    		•     14022 [**] 
    443187 [**] 
    		   19 A
    1    		 1
    6204
  • Heterogeneous nuclear ribonucleoprotein L
    		•     9043 [**] 
    		   7 A3 1
    6205
  • Tau tubulin kinase 2
    		•     275698  
    		   2 1
    6206
  • CAP, adenylate cyclase-associated protein 1 (yeast)
  • Palmitoyl-protein thioesterase 1
    		•     277719 [**] 
    		   4 D1-D3|4 59.1 cM 1
    6207
  • Ubiquitin specific peptidase 32
  • Transcribed locus
    		•     458749  
    		   11 1
    6208
  • Plakophilin 4
    		•     260938 [**] 
    		   2 C3 1
    6209
  • Kinesin family member 5B
    		•     223744 [**] 
    		   18 1.0 cM 1
    6210
  • Metadherin
    		•           1
    6211
  • Unidentified gi216b09
    		•           1
    6212
  • Melanoma associated antigen (mutated) 1
    		•     273418 [**] 
    		   10 C1 1
    6213
  • Transmembrane protein 47
  • Transcribed locus
    		•     441557  
    		   X 1
    6214
  • Endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
  • PREDICTED: Mus musculus hypothetical protein LOC100041423 (LOC100041423), mRNA
    		•     291482  
    400995  
    		   18 B1-B2
    18 B2    		 1
    6215
  • CDNA sequence BC033915
    		•           1
    6216
  • Exostoses (multiple) 1
  • Transcribed locus
    		•     436958  
    		   15 1
    6217
  • Methyltransferase like 6
    		•     291731  
    		   14 B 1
    6218
  • B-cell CLL/lymphoma 7A
    		•     151960  
    		   5 F 1
    6219
  • RIKEN cDNA 8430419L09 gene
    		•     34182 [**] 
    		   6 G1 1
    6220
  • Unidentified gi212d04
  • UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
    		•     398181 [**] 
    		   18 A2 1
    6221
  • Unidentified gi211a07
  • Mortality factor 4 like 2
    		•     27218 [**] 
    		   X F1 1
    6222
  • CD9 antigen
    		•     210676 [**] 
    		   6 F3|6 58.0 cM 1
    6223
  • Transcribed locus
    		•     244215  
    		   1 1
    6224
  • Eukaryotic translation initiation factor 2B, subunit 3
    		•     34612 [**] 
    		   4 D1 1
    6225
  • Ankyrin repeat domain 24
    		•     304382  
    		   10 C1|10 43.0 cM 1
    6226
  • F-box protein 2
    		•     262287 [**] 
    		   4 E2 1
    6227
  • Predicted gene, ENSMUSG00000074215
    		•     44438  
    		   8 1
    6228
  • 68% protein similarity to: PREDICTED: hypothetical protein XP_530055 [Pan troglodytes]
  • RIKEN cDNA 2610014I16 gene
    		•     407138 [**] 
    		   7 A2 1
    6229
  • Transcribed locus
    		•     326702  
    		   1 1
    6230
  • Unidentified gi206b05
    		•           1
    6231
  • Potassium voltage-gated channel, subfamily Q, member 4
    		•     249977  
    		   4 D2.2 1
    6232
  • Phosphatidylinositol-5-phosphate 4-kinase, type II, beta
    		•     39700  
    		   11 D|11 58.2 cM 1
    6233
  • Poly A binding protein, cytoplasmic 1
    		•     371570 [**] 
    		   15 C 1
    6234
  • Trans-acting transcription factor 1
    		•     4618 [**] 
    		   15 F3 1
    6235
  • Complement receptor related protein
    		•     301652 [**] 
    		   1 H6|1 106.6 cM 1
    6236
  • BAI1-associated protein 2-like 1
    		•           1
    6237
  • Unidentified gi204d10
    		•           1
    6238
  • B-cell linker
    		•     9749  
    		   19 C3|19 31.0 cM 1
    6239
  • RIKEN cDNA D930050A07 gene
  • Transcribed locus
    		•     404299  
    		   14 1
    6240
  • Unidentified gi202e10
  • Bone morphogenic protein receptor, type II (serine/threonine kinase)
    		•     391654  
    		   1 C1.3 1
    6241
  • Leukocyte cell derived chemotaxin 1
    		•           1
    6242
  • Ring finger protein 25
    		•     280920 [**] 
    		   1 C3 1
    6243
  • Reticulon 4 receptor-like 2
    		•     86447  
    		   2 D 1
    6244
  • Calcium binding protein 39
    		•     26135 [**] 
    		   1 C5 1
    6245
  • Mitogen activated protein kinase kinase kinase 7
    		•     258589  
    		   4 A5 1
    6246
  • Transcribed locus
    		•     284974  
    408493  
    		   8
    8    		 1
    6247
  • Predicted gene, OTTMUSG00000007002
    		•     103464  
    		   4 1
    6248
  • SFRS12-interacting protein 1
  • Transcribed locus
    		•     441263  
    		   13 1
    6249
  • Ankyrin repeat domain 10
    		•     12459 [**] 
    		   8 A1.1 1
    6250
  • Unidentified gi198c05
  • Testis derived transcript
    		•     436548 [**] 
    		   6 A2|6 1.5 cM 1
    6251
  • Transcribed locus
  • Forkhead box G1
    		•     463639  
    		   12 B3|12 21.0 cM 1
    6252
  • RNA binding motif, single stranded interacting protein 1
    		•     392825  
    		   2 C3 1
    6253
  • Thyroid hormone receptor beta
    		•     32563  
    		   14 A3 1
    6254
  • Unidentified gi196d04
    		•           1
    6255
  • RAN GTPase activating protein 1
    		•           1
    6256
  • Adenosine kinase
  • Transcribed locus
    		•     412133  
    		   14 1
    6257
  • Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
    		•           1
    6258
  • G patch domain containing 8
  • Ubiquinol-cytochrome c reductase (6.4kD) subunit
    		•     379119  
    		   10 C1 1
    6259
  • RAD52 motif 1
    		•     41449  
    		   11 D 1
    6260
  • N-myristoyltransferase 2
    		•           1
    6261
  • Transcribed locus
    		•     125896  
    		   8 1
    6262
  • Vestigial like 4 (Drosophila)
    		•     268357 [**] 
    		   6 E3 1
    6263
  • Ubiquinol cytochrome c reductase core protein 2
    		•     334206 [**] 
    		   7 F2 1
    6264
  • Secreted frizzled-related protein 1
    		•     281691 [**] 
    		   8 A2|8 9.5 cM 1
    6265
  • Unidentified gi192f07
  • Nuclear receptor subfamily 2, group F, member 2
    		•     158143 [**] 
    		   7 D1|7 33.0 cM 1
    6266
  • RIKEN cDNA 4930431H11 gene
    		•     355614  
    		   3 1
    6267
  • Unidentified gi191e05
    		•           1
    6268
  • RNA binding motif protein 9
    		•     202774 [**] 
    		   15 E1 1
    6269
  • Naked cuticle 1 homolog (Drosophila)
  • Transcribed locus
    		•     450154  
    		   8 1
    6270
  • NFKB inhibitor interacting Ras-like protein 2
  • Transcribed locus
    		•     398731  
    		   11 1
    6271
  • Unidentified gi190g09
  • Ribosomal protein L7-like 1
    		•     218533 [**] 
    		   17 C 1
    6272
  • Protein kinase C, alpha
  • Transcribed locus
    		•     441616  
    		   11 1
    6273
  • Intraflagellar transport 81 homolog (Chlamydomonas)
    		•           1
    6274
  • Myc induced nuclear antigen
    		•           1
    6275
  • Neural precursor cell expressed, developmentally down-regulted gene 4
  • Transcribed locus
    		•     411481  
    		   9 1
    6276
  • Symplekin
    		•     130902 [**] 
    		   7 A3 1
    6277
  • Zic finger protein of the cerebellum 2
    		•     308936  
    		   14 E5|14 62.0 cM 1
    6278
  • Transcribed locus
    		•           1
    6279
  • Membrane metallo endopeptidase
  • Transcribed locus
    		•     296022 [**] 
    392964  
    		   3 E1|3 29.6 cM
    3    		 1
    6280
  • Phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
    		•     182931 [**] 
    		   5 E1 1
    6281
  • Hemoglobin, beta adult major chain
    		•     288567 [**] 
    		   7 E3|7 50.0 cM 1
    6282
  • Unidentified gi185a02
  • Transcribed locus
    		•     450856  
    		   7 1
    6283
  • Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
    		•     234195 [**] 
    		   14 C3 1
    6284
  • Hormonally upregulated Neu-associated kinase
    		•           1
    6285
  • Ring finger protein 149
  • Transcribed locus
    		•     450902  
    		   1 1
    6286
  • Transcribed locus
    		•     318695  
    		   4 1
    6287
  • Structural maintenance of chromosomes 6
    		•     173953 [**] 
    		   12 A2 1
    6288
  • 91% protein similarity to: ribosomal protein S15 [synthetic construct]
  • Ribosomal protein S15
    		•     643 [**] 
    		   10 C1 1
    6289
  • Interferon regulatory factor 2
    		•           1
    6290
  • Unidentified gi181b09
  • Leucine rich repeat containing G protein coupled receptor 5
    		•     42103 [**] 
    		   10 D2 1
    6291
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
    		•     29490 [**] 
    		   10 D3|10 70.0 cM 1
    6292
  • Amyloid beta (A4) precursor protein binding, family A, member 1
    		•     22879  
    		   19 B 1
    6293
  • Casitas B-lineage lymphoma b
    		•           1
    6294
  • Unidentified gi179a11
  • RIKEN cDNA 1110059G02 gene
    		•     470816  
    		   15 1
    6295
  • CCR4 carbon catabolite repression 4-like (S. cerevisiae)
    		•           1
    6296
  • ST3 beta-galactoside alpha-2,3-sialyltransferase 4
    		•     275973 [**] 
    		   9 A5.3 1
    6297
  • Expressed sequence AI646383
    		•     116830  
    		   17 1
    6298
  • Tropomodulin 1
    		•     331588 [**] 
    		   4 B1|4 21.5 cM 1
    6299
  • Proline-rich coiled-coil 1
    		•     29889 [**] 
    		   18 D3 1
    6300
  • Transforming growth factor, beta 2
    		•     18213 [**] 
    		   1 H5|1 101.5 cM 1


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