NbLib0053: NIDCD mouse organ of corti unnormalized (gi)
Last GRIST date: 03/20/2008
Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication
EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).
View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.
| Group# | Description |
Entrez Gene Id | GenBank | UniGene (Build Mm #175) |
Chromosomal Pos. (BLAT) | Chromosome (UniGene) | Num. Clones |
|---|
| 6701 | Similar to EST: BB636003
| |
BB636003
GeneNetwork |
|
|
|
1 |
| 6702 | Similar to EST: BG805822
KH domain containing, RNA binding, signal transduction associated 1
| |
BG805822
GeneNetwork |
8256 [**]
|
|
4 D2.2 |
1 |
| 6703 | Similar to EST: BX526523
Cleavage and polyadenylation specific factor 6
| |
BX526523
GeneNetwork |
288682 [**]
|
|
10 D2 |
1 |
| 6704 | Similar to EST: BQ567526
| |
BQ567526
GeneNetwork |
|
|
|
1 |
| 6705 | Similar to EST: BG087977
| |
BG087977
GeneNetwork |
|
|
|
1 |
| 6706 | Similar to EST: BY732785
| |
BY732785
GeneNetwork |
|
|
|
1 |
| 6707 | Similar to EST: CF748016
Melanoma inhibitory activity 1
| |
CF748016
GeneNetwork |
262447 [**]
|
|
7 A3|7 1.9 cM |
1 |
| 6708 | Similar to EST: BG083742
Transcribed locus
| |
BG083742
GeneNetwork |
432813
|
|
7 |
1 |
| 6709 | Similar to EST: BP755187
Transmembrane emp24 protein transport domain containing 7
| |
BP755187
GeneNetwork |
296043 [**]
|
|
18 C |
1 |
| 6710 | Similar to EST: CB195684
| |
CB195684
GeneNetwork |
|
|
|
1 |
| 6711 | Similar to EST: BQ568151
KH domain containing, RNA binding, signal transduction associated 1
| |
BQ568151
GeneNetwork |
8256 [**]
|
|
4 D2.2 |
1 |
| 6712 | Similar to EST: AA049507
| |
AA049507
GeneNetwork |
|
|
|
1 |
| 6713 | Similar to EST: CN717723
NADH dehydrogenase (ubiquinone) Fe-S protein 1
| |
CN717723
GeneNetwork |
290791 [**]
|
|
1 C2 |
1 |
| 6714 | Similar to EST: BB532297
| |
BB532297
GeneNetwork |
|
|
|
1 |
| 6715 | Similar to EST: BG088143
| |
BG088143
GeneNetwork |
|
|
|
1 |
| 6716 | 90% protein similarity to: PREDICTED: similar to Rpl23a protein [Canis familiaris] (Similar to EST: AA547598)
| |
AA547598
GeneNetwork |
|
|
|
1 |
| 6717 | Similar to EST: BQ550942
Transcribed locus
| |
BQ550942
GeneNetwork |
407328
|
|
17 |
1 |
| 6718 | Similar to EST: AI451741
Naked cuticle 1 homolog (Drosophila)
| |
AI451741
GeneNetwork |
30219
|
|
8 C4 |
1 |
| 6719 | Similar to EST: BQ552291
Transcribed locus
| |
BQ552291
GeneNetwork |
414372
|
|
15 |
1 |
| 6720 | Similar to EST: AA517752
Transcribed locus
| |
AA517752
GeneNetwork |
437158
|
|
18 |
1 |
| 6721 | Similar to EST: CF578650
Transcribed locus
| |
CF578650
GeneNetwork |
418938
|
|
11 |
1 |
| 6722 | Similar to EST: CN704808
Transcribed locus, weakly similar to NP_001078427.1 unknown protein [Arabidopsis thaliana]
| |
CN704808
GeneNetwork |
426546
|
|
5 |
1 |
| 6723 | Similar to EST: BY724603
Phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide
| |
BY724603
GeneNetwork |
3810
|
|
7 F1|7 53.0 cM |
1 |
| 6724 | Similar to EST: CN684488
| |
CN684488
GeneNetwork |
|
|
|
1 |
| 6725 | 85% protein similarity to: Rcor3 protein [Mus musculus] (Similar to EST: BY188168)
REST corepressor 3
| |
BY188168
GeneNetwork |
207457
|
|
1 H6 |
1 |
| 6726 | Similar to EST: BE656381
Transcribed locus
| |
BE656381
GeneNetwork |
100895
|
|
4 |
1 |
| 6727 | Similar to EST: BP764359
Mitogen activated protein kinase 1
| |
BP764359
GeneNetwork |
196581 [**]
|
|
16 A3|16 9.82 cM |
1 |
| 6728 | Similar to EST: CB194792
Ring finger protein 14
| |
CB194792
GeneNetwork |
228903 [**]
|
|
18 B3|18 17.0 cM |
1 |
| 6729 | Similar to EST: AU257190
Transcribed locus
| |
AU257190
GeneNetwork |
440253
|
|
11 |
1 |
| 6730 | Similar to EST: BB326547
| |
BB326547
GeneNetwork |
|
|
|
1 |
| 6731 | Similar to EST: BI733430
Transient receptor potential cation channel, subfamily M, member 3
| |
BI733430
GeneNetwork |
440339 [**]
|
|
19 B |
1 |
| 6732 | Similar to EST: BF580239
| |
BF580239
GeneNetwork |
|
|
|
1 |
| 6733 | Similar to EST: BM204500
Nuclear factor of activated T-cells 5
| |
BM204500
GeneNetwork |
390057 [**]
|
|
8 D2|8 53.0 cM |
1 |
| 6734 | Similar to EST: BQ564929
| |
BQ564929
GeneNetwork |
|
|
|
1 |
| 6735 | Similar to EST: BQ564935
| |
BQ564935
GeneNetwork |
|
|
|
1 |
| 6736 | Similar to EST: BM933113
Transcribed locus
| |
BM933113
GeneNetwork |
444021
|
|
16 |
1 |
| 6737 | Similar to EST: BE652325
Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
| |
BE652325
GeneNetwork |
2212 [**]
|
|
10 B4 |
1 |
| 6738 | Similar to EST: CK620863
Heparan-alpha-glucosaminide N-acetyltransferase
| |
CK620863
GeneNetwork |
28326
|
|
8 A2|8 8.0 cM |
1 |
| 6739 | Similar to EST: BM878425
Splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)
| |
BM878425
GeneNetwork |
442193
|
|
16 B1 |
1 |
| 6740 | Similar to EST: CX729610
Lysosomal-associated protein transmembrane 4A
| |
CX729610
GeneNetwork |
30071 [**]
|
|
12 A1.1 |
1 |
| 6741 | Similar to EST: BI180543
| |
BI180543
GeneNetwork |
|
|
|
1 |
| 6742 | 85% protein similarity to: hypothetical protein LOC320650 [Mus musculus]
| |
|
|
|
|
1 |
| 6743 | 69% protein similarity to: non-functional lacZ alpha peptide
| |
|
|
|
|
1 |
| 6744 | Unidentified gi01a11
| |
|
|
|
|
1 |
| 6745 | Unidentified gi02a06
| |
|
|
|
|
1 |
| 6746 | Unidentified gi73h05
| |
|
|
|
|
1 |
| 6747 | 82% protein similarity to: aldose reductase [Mus musculus]
| |
|
|
|
|
1 |
| 6748 | Unidentified gi73f10
| |
|
|
|
|
1 |
| 6749 | Unidentified gi73f04
| |
|
|
|
|
1 |
| 6750 | Unidentified gi73d09
| |
|
|
|
|
1 |
| 6751 | Unidentified gi73d02
| |
|
|
|
|
1 |
| 6752 | Unidentified gi73b06
| |
|
|
|
|
1 |
| 6753 | Unidentified gi72g07
| |
|
|
|
|
1 |
| 6754 | Unidentified gi72a11
| |
|
|
|
|
1 |
| 6755 | Unidentified gi71g09
| |
|
|
|
|
1 |
| 6756 | Unidentified gi71b04
| |
|
|
|
|
1 |
| 6757 | Unidentified gi71a07
| |
|
|
|
|
1 |
| 6758 | Unidentified gi58f04
| |
|
|
|
|
1 |
| 6759 | Unidentified gi58e01
| |
|
|
|
|
1 |
| 6760 | Unidentified gi58d11
| |
|
|
|
|
1 |
| 6761 | Unidentified gi58c03
| |
|
|
|
|
1 |
| 6762 | Unidentified gi58b01
| |
|
|
|
|
1 |
| 6763 | Unidentified gi58a06
| |
|
|
|
|
1 |
| 6764 | Unidentified gi57h11
| |
|
|
|
|
1 |
| 6765 | Unidentified gi57h01
| |
|
|
|
|
1 |
| 6766 | Unidentified gi57f05
| |
|
|
|
|
1 |
| 6767 | Unidentified gi57e01
| |
|
|
|
|
1 |
| 6768 | Unidentified gi57c08
| |
|
|
|
|
1 |
| 6769 | Unidentified gi57c06
| |
|
|
|
|
1 |
| 6770 | Unidentified gi56g04
| |
|
|
|
|
1 |
| 6771 | Unidentified gi56e08
| |
|
|
|
|
1 |
| 6772 | Unidentified gi56c11
| |
|
|
|
|
1 |
| 6773 | Unidentified gi55h06
| |
|
|
|
|
1 |
| 6774 | Unidentified gi55e12
| |
|
|
|
|
1 |
| 6775 | Unidentified gi55e09
| |
|
|
|
|
1 |
| 6776 | Unidentified gi55d09
| |
|
|
|
|
1 |
| 6777 | Unidentified gi55d05
| |
|
|
|
|
1 |
| 6778 | Unidentified gi55d01
| |
|
|
|
|
1 |
| 6779 | Unidentified gi55c11
| |
|
|
|
|
1 |
| 6780 | Unidentified gi55c10
| |
|
|
|
|
1 |
| 6781 | Unidentified gi55b09
| |
|
|
|
|
1 |
| 6782 | Unidentified gi55a01
| |
|
|
|
|
1 |
| 6783 | Unidentified gi54e11
| |
|
|
|
|
1 |
| 6784 | Unidentified gi54e04
| |
|
|
|
|
1 |
| 6785 | Unidentified gi54e03
| |
|
|
|
|
1 |
| 6786 | Unidentified gi54c08
| |
|
|
|
|
1 |
| 6787 | Unidentified gi54c06
| |
|
|
|
|
1 |
| 6788 | Unidentified gi54c01
| |
|
|
|
|
1 |
| 6789 | Unidentified gi54b08
| |
|
|
|
|
1 |
| 6790 | Unidentified gi54b07
| |
|
|
|
|
1 |
| 6791 | Unidentified gi54b02
| |
|
|
|
|
1 |
| 6792 | Unidentified gi53c05
| |
|
|
|
|
1 |
| 6793 | Unidentified gi53b07
| |
|
|
|
|
1 |
| 6794 | Unidentified gi52h12
| |
|
|
|
|
1 |
| 6795 | Unidentified gi52h04
| |
|
|
|
|
1 |
| 6796 | Unidentified gi52g07
| |
|
|
|
|
1 |
| 6797 | 93% protein similarity to: hemC [Rattus sp.]
| |
|
|
|
|
1 |
| 6798 | Unidentified gi52g01
| |
|
|
|
|
1 |
| 6799 | Unidentified gi52f06
| |
|
|
|
|
1 |
| 6800 | 81% protein similarity to: RPS15A protein [Homo sapiens]
| |
|
|
|
|
1 |
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