|
|
| Quick Links to Page Contents |
|
| | |
|
| Intended Audiences:
Biological researchers |
| Area of Focus:
Pathways |
Primary Workspace:
ICR |
Product Description:
Pathways is a suite of tools, which include: cPath, an open source pathway database and software suite designed for systems biology research; and Cytoscape, used to overlay gene expression data and visualize the results. The third piece is Biological Pathway Exchange language, which is a data standard currently under development to model biological pathways. |
| Current Version Number: 0.6 (caPath) |
Release Date of Current Version:
December 2006 (cPath) |
Currently caGrid Enabled?
No
|
caBIG™ Compatibility Level:
Not yet determined
Learn more about compatibility levels |
| Tool Maturity Assessment:
Stable Release (Adoption in Progress) |
Installation Level:
Intermediate - technical assistance may be required, download may require supporting infrastructure or software
|
Architecture Type:
Web Application - Remote application with data uploads/downloads through web interface |
System Requirements:
Installation of cPath requires: MySQL version 4.0 or 4.1; Apache Tomcat version 5.0.28; Apache Ant version 1.6 or later; and Perl version 5.0 or later. Installation of Cytoscape version 2.0 or later is available at http://cytoscape.org |
|
| End User Support Resources |
|
|
|
|
|
Demo Files & Exercises
None Available.
Documentation & Training
Access the caBIG™ Learning Management System to learn about training programs, register for classes, track your progress, and stay informed about training offerings. We invite you to explore the catalog to see what is available. You will need to create an account before registering for classes.
Pathways Training Module cPath Project Website cPath Administrator Guide cPath Architecture Guide cPath Administrators Guide
Tool Download Files
Download cPath Version 0.6 Cytoscape version 2.0 or later
Developer Institution(s)
Memorial Sloan-Kettering Cancer Center
Adopter Institution(s)
Oregon Health and Sciences University
|
