NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
1501
  • Transcribed locus
    		•     85879  
    		   1 3
    1502
  • RIKEN cDNA 2610024G14 gene
    		•     129136  
    		   5 C3.3 3
    1503
  • Translocase of inner mitochondrial membrane 13 homolog (yeast)
  • Transmembrane protease, serine 9
    		•     235302 [**] 
    		   10 C1 3
    1504
  • Unidentified gi61h07
  • Proline-rich coiled-coil 1
    		•     29889 [**] 
    		   18 D3 3
    1505
  • RIKEN cDNA 9030612M13 gene
    		•     38813 [**] 
    		   17 B1 3
    1506
  • RIKEN cDNA 2610203C20 gene
    		•           3
    1507
  • DnaJ (Hsp40) homolog, subfamily B, member 12
  • Transcribed locus
    		•     103610  
    442100  
    		   10 B3
    10    		 3
    1508
  • Unidentified gi139a01
  • Transcribed locus
  • Early B-cell factor 1
    		•     414172  
    439662 [**] 
    		   11
    11 B1.1|11 20.0 cM    		 3
    1509
  • Unidentified gi121h02
  • PHD finger protein 10
  • Expressed sequence AV024533
    		•     440085  
    441520  
    		   17 A2
    17    		 3
    1510
  • Regulator of G-protein signalling 10
    		•           3
    1511
  • Transcribed locus, strongly similar to NP_001028350.1 hypothetical protein LOC77106 [Mus musculus]
  • Transcribed locus
  • Transmembrane protein 181
  • Transcribed locus
    		•     441492  
    458047  
    458985  
    		   17
    17 A1
    17    		 3
    1512
  • Utrophin
    		•           3
    1513
  • Numb gene homolog (Drosophila)
    		•           3
    1514
  • Transcribed locus
    		•     348474  
    		   4 3
    1515
  • RIKEN cDNA 2810403A07 gene
  • Transcribed locus
    		•     251800 [**] 
    411823  
    		   3 F1
    3    		 3
    1516
  • Unidentified gi31a02
  • Microtubule-actin crosslinking factor 1
    		•     402299 [**] 
    		   4 D2.2|4 57.4 cM 3
    1517
  • Potassium channel tetramerisation domain containing 12
  • Transcribed locus
    		•     246466 [**] 
    466153  
    		   14 E2.3
    14    		 3
    1518
  • Unidentified gi196e03
  • RNA binding motif protein 39
  • Transcribed locus
    		•     392436 [**] 
    437017 [**] 
    		   2 H1
    2    		 3
    1519
  • Unidentified gi193b10
  • Transcribed locus
  • Transcribed locus
    		•     439447  
    460360  
    		   14
    14    		 3
    1520
  • RNA binding motif protein 26
  • Transcribed locus
    		•     437467  
    		   14 3
    1521
  • Soc-2 (suppressor of clear) homolog (C. elegans)
    		•           3
    1522
  • Similar to EST: CB850155
    		•   CB850155  
    GeneNetwork    		       3
    1523
  • Similar to EST: BQ570373
    		•   BQ570373  
    GeneNetwork    		       3
    1524
  • Unidentified gi35c07
    		•           3
    1525
  • Unidentified gi122f10
    		•           3
    1526
  • Unidentified gi93a08
    		•           3
    1527
  • Unidentified gi96g12
    		•           3
    1528
  • Mus musculus RIKEN cDNA E130307M08 gene (E130307M08Rik), mRNA
  • MPN domain containing
    		• 68047
    		NM_026530  
    GeneNetwork    		 358710  
    		   17 D 2
    1529
  • Mus musculus Metadherin (Mtdh), mRNA
  • Metadherin
    		• 67154
    		NM_026002  
    GeneNetwork    		 130883  
    		   15 B3.3|15 53.5 cM 2
    1530
  • Mus musculus membrane interacting protein of RGS16 (Mir16), mRNA
  • Membrane interacting protein of RGS16
    		• 56209
    		NM_019580  
    GeneNetwork    		 273142  
    		   7 F3 2
    1531
  • Mus musculus G protein-coupled receptor 124 (Gpr124), mRNA
  • G protein-coupled receptor 124
    		• 78560
    		NM_054044  
    GeneNetwork    		 87046  
    		   8 A3 2
    1532
  • Mus musculus potassium inwardly-rectifying channel, subfamily J, member 16 (Kcnj16), mRNA
  • Potassium inwardly-rectifying channel, subfamily J, member 16
    		• 16517
    		NM_010604  
    GeneNetwork    		 30176  
    		   11 E2|11 71.0 cM 2
    1533
  • Mus musculus RIKEN cDNA 9130011J15 gene (9130011J15Rik), mRNA
  • RIKEN cDNA 9130011J15 gene
    		• 66818
    		NM_172396  
    GeneNetwork    		 22565  
    		   8 B3.3 2
    1534
  • Mus musculus DNA segment, Chr 15, ERATO Doi 366, expressed (D15Ertd366e), mRNA
  • LIM domain and actin binding 1
    		• 65970
    		NM_023063  
    GeneNetwork    		 33207  
    		   15 F1|15 60.4 cM 2
    1535
  • Mus musculus RIKEN cDNA 4930469P12 gene (4930469P12Rik), mRNA
  • V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
  • LYR motif containing 5
    		• 67636
    		NM_133688  
    GeneNetwork    		 383182  
    46847  
    		   6 G2|6 71.2 cM
    6 G3|6 71.12 cM    		 2
    1536
  • Mus musculus elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 (Elovl4), mRNA
  • Elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
    		• 83603
    		NM_148941  
    GeneNetwork    		 83949  
    		   9 E2 2
    1537
  • Mus musculus mitochondrial ribosomal protein L13 (Mrpl13), mRNA
  • Mitochondrial ribosomal protein L13
    		• 68537
    		NM_026759  
    GeneNetwork    		 236795  
    		   15 D2 2
    1538
  • Mus musculus protein phosphatase 1, regulatory subunit 9B (Ppp1r9b), mRNA
  • Protein phosphatase 1, regulatory subunit 9B
    		• 217124
    		NM_172261  
    GeneNetwork    		 229087  
    		   11 D 2
    1539
  • Mus musculus small nuclear ribonucleoprotein polypeptide A (Snrpa), mRNA
  • Small nuclear ribonucleoprotein polypeptide A
    		• 53607
    		NM_015782  
    GeneNetwork    		 386890  
    		   7 A3 2
    1540
  • Mus musculus X-box binding protein 1 (Xbp1), mRNA
  • X-box binding protein 1
    		• 22433
    		NM_013842  
    GeneNetwork    		 469937  
    		   11 A1|11 3.0 cM 2
    1541
  • PREDICTED: Mus musculus DNA segment, Chr 10, ERATO Doi 516, expressed (D10Ertd516e), mRNA
  • Cullin associated and neddylation disassociated 1
    		• 71902
    		XM_125901  
    GeneNetwork    		 203965  
    		   10 D2|10 63.0 cM 2
    1542
  • Mus musculus Bernardinelli-Seip congenital lipodystrophy 2 homolog (human) (Bscl2), mRNA
  • Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
    		• 14705
    		NM_008144  
    GeneNetwork    		 345134  
    		   19 A|19 4.0 cM 2
    1543
  • Mus musculus emopamil binding protein-like (Ebpl), mRNA
  • Emopamil binding protein-like
    		• 68177
    		NM_026598  
    GeneNetwork    		 22758  
    		   14 D1 2
    1544
  • Mus musculus stromal antigen 1 (Stag1), mRNA
  • Stromal antigen 1
    		• 20842
    		NM_009282  
    GeneNetwork    		 42135  
    		   9 F1 2
    1545
  • Mus musculus acetyl-Coenzyme A acyltransferase 1 (Acaa1), mRNA
  • Acetyl-Coenzyme A acyltransferase 1A
    		• 113868
    		NM_130864  
    GeneNetwork    		 205266  
    		   9 F4|9 71.0 cM 2
    1546
  • Mus musculus peptidyl arginine deiminase, type II (Padi2), mRNA
  • Peptidyl arginine deiminase, type II
    		• 18600
    		NM_008812  
    GeneNetwork    		 2296  
    		   4 E1|4 71.0 cM 2
    1547
  • Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430047F01 product:unknown EST, full insert sequence
  • Protein geranylgeranyltransferase type I, beta subunit
    		• 225467
    		AK085164  
    GeneNetwork    		 393044  
    		   18 C 2
    1548
  • Mus musculus RAD9 homolog B (S. cerevisiae) (Rad9b), mRNA
  • RAD9 homolog B (S. cerevisiae)
    		• 231724
    		NM_144912  
    GeneNetwork    		 255587  
    		   5 F 2
    1549
  • Mus musculus protein phosphatase 1, regulatory (inhibitor) subunit 1A (Ppp1r1a), mRNA
  • Protein phosphatase 1, regulatory (inhibitor) subunit 1A
    		• 58200
    		NM_021391  
    GeneNetwork    		 143788  
    		   15 F 2
    1550
  • Mus musculus RNA binding motif protein 19 (Rbm19), mRNA
  • RNA binding motif protein 19
    		• 74111
    		NM_028762  
    GeneNetwork    		 41022  
    		   5 F 2
    1551
  • Mus musculus A kinase (PRKA) anchor protein 8-like (Akap8l), mRNA
  • A kinase (PRKA) anchor protein 8-like
    		• 54194
    		NM_017476  
    GeneNetwork    		 281005  
    		   17 B2 2
    1552
  • Mus musculus RIKEN cDNA 2010315L10 gene (2010315L10Rik), transcript variant 1, mRNA
  • Unconventional SNARE in the ER 1 homolog (S. cerevisiae)
    		• 67023
    		NM_025917  
    GeneNetwork    		 41890  
    		   8 C1 2
    1553
  • Mus musculus polymerase (DNA-directed), delta 4 (Pold4), mRNA
  • Polymerase (DNA-directed), delta 4
    		• 69745
    		NM_027196  
    GeneNetwork    		 32518  
    		   19 A 2
    1554
  • Mus musculus RIKEN cDNA 5730528L13 gene (5730528L13Rik), mRNA
  • RIKEN cDNA 5730528L13 gene
    		• 66665
    		NM_028137  
    GeneNetwork    		 140749  
    		   4 B2 2
    1555
  • Mus musculus acyl-CoA synthetase long-chain family member 1 (Acsl1), mRNA
  • Acyl-CoA synthetase long-chain family member 1
    		• 14081
    		NM_007981  
    GeneNetwork    		 210323  
    		   8 B2 2
    1556
  • Mus musculus RIKEN cDNA 1600015H20 gene (1600015H20Rik), mRNA
  • Fibulin 7
    		• 70370
    		NM_024237  
    GeneNetwork    		 5107  
    		   2 F3 2
    1557
  • Mus musculus RIKEN cDNA 0610038D11 gene (0610038D11Rik), mRNA
  • RIKEN cDNA 0610038D11 gene
    		• 67674
    		NM_026306  
    GeneNetwork    		 318804  
    		   19 E1 2
    1558
  • Mus musculus inositol 1,4,5-triphosphate receptor 1 (Itpr1), mRNA
  • ATG2 autophagy related 2 homolog B (S. cerevisiae)
  • Inositol 1,4,5-triphosphate receptor 1
    		• 16438
    		NM_010585  
    GeneNetwork    		 114362  
    227912  
    		   12 E
    6 E1-E2|6 48.0 cM    		 2
    1559
  • Mus musculus cDNA sequence BC027127 (BC027127), mRNA
  • V-set and transmembrane domain containing 2A
    		• 211739
    		NM_145967  
    GeneNetwork    		 284015  
    		   11 A2 2
    1560
  • Mus musculus FUN14 domain containing 1 (Fundc1), mRNA
  • FUN14 domain containing 1
    		• 72018
    		NM_028058  
    GeneNetwork    		 41558  
    		   X A2 2
    1561
  • Mus musculus NK6 transcription factor related, locus 1 (Drosophila) (Nkx6-1), mRNA
  • NK6 transcription factor related, locus 1 (Drosophila)
    		• 18096
    		NM_144955  
    GeneNetwork    		 193072  
    		   5 E4 2
    1562
  • Mus musculus NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 (Ndufb3), mRNA
  • NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3
    		• 66495
    		NM_025597  
    GeneNetwork    		 2033  
    		   1 C1.3 2
    1563
  • Mus musculus growth arrest specific 1 (Gas1), mRNA
  • Growth arrest specific 1
    		• 14451
    		NM_008086  
    GeneNetwork    		 22701  
    		   13 B3-C2|13 37.0 cM 2
    1564
  • Mus musculus neuroblastoma, suppression of tumorigenicity 1 (Nbl1), mRNA
  • Neuroblastoma, suppression of tumorigenicity 1
    		• 17965
    		NM_008675  
    GeneNetwork    		 9404  
    		   4 D3|4 70.0 cM 2
    1565
  • Mus musculus Rho-associated coiled-coil forming kinase 1 (Rock1), mRNA
  • Rho-associated coiled-coil containing protein kinase 1
    		• 19877
    		NM_009071  
    GeneNetwork    		 6710  
    		   18 A2 2
    1566
  • Mus musculus mannose-P-dolichol utilization defect 1 (Mpdu1), mRNA
  • Mannose-P-dolichol utilization defect 1
    		• 24070
    		NM_011900  
    GeneNetwork    		 89579  
    		   11 B3|11 39.0 cM 2
    1567
  • Mus musculus expressed sequence C77604 (C77604), mRNA
  • BUD31 homolog (yeast)
    		• 231889
    		NM_001008705  
    GeneNetwork    		 277413  
    		   5 G2 2
    1568
  • Mus musculus growth factor receptor bound protein 2 (Grb2), mRNA
  • Growth factor receptor bound protein 2
    		• 14784
    		NM_008163  
    GeneNetwork    		 439649  
    		   11 E2|11 75.0 cM 2
    1569
  • Mus musculus dehydrogenase/reductase (SDR family) member 6 (Dhrs6), mRNA
  • 3-hydroxybutyrate dehydrogenase, type 2
    		• 69772
    		NM_027208  
    GeneNetwork    		 45121  
    		   3 H2 2
    1570
  • Mus musculus patatin-like phospholipase domain containing 2 (Pnpla2), mRNA
  • Patatin-like phospholipase domain containing 2
    		• 66853
    		NM_025802  
    GeneNetwork    		 29998  
    		   7 F5 2
    1571
  • Mus musculus growth differentiation factor 6 (Gdf6), mRNA
  • Growth differentiation factor 6
    		• 242316
    		NM_013526  
    GeneNetwork    		 302555  
    		   4 A1 2
    1572
  • Mus musculus calpastatin (Cast), mRNA
  • Calpastatin
    		• 12380
    		NM_009817  
    GeneNetwork    		 29163  
    		   13 C1 2
    1573
  • Mus musculus catenin beta interacting protein 1 (Ctnnbip1), mRNA
  • Catenin beta interacting protein 1
    		• 67087
    		NM_023465  
    GeneNetwork    		 299735  
    		   4 E2 2
    1574
  • Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library, clone:5430419M07 product:unknown EST, full insert sequence
  • Collagen, type VIII, alpha 1
  • Transcribed locus
    		• 12837
    		AK030674  
    GeneNetwork    		 130388  
    470908 [**] 
    		   16 C1.1
    16    		 2
    1575
  • PREDICTED: Mus musculus RIKEN cDNA B230339M05 gene (B230339M05Rik), mRNA
  • RIKEN cDNA B230339M05 gene
    		•   XM_283803  
    GeneNetwork    		 398185  
    		   2 H1 2
    1576
  • Mus musculus XPA binding protein 2 (Xab2), mRNA
  • XPA binding protein 2
    		• 67439
    		NM_026156  
    GeneNetwork    		 23739  
    		   8 A1.1|8 1.0 cM 2
    1577
  • Mus musculus UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 (B4galt1), mRNA
  • UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
    		• 14595
    		NM_022305  
    GeneNetwork    		 15622  
    		   4 A5|4 18.6 cM 2
    1578
  • Mus musculus procollagen C-endopeptidase enhancer 2 (Pcolce2), mRNA
  • Procollagen C-endopeptidase enhancer 2
    		• 76477
    		NM_029620  
    GeneNetwork    		 46016  
    		   9 E3.3 2
    1579
  • Mus musculus supervillin (Svil), transcript variant 1, mRNA
  • Supervillin
    		• 225115
    		NM_153153  
    GeneNetwork    		 136791  
    		   18 A1 2
    1580
  • Mus musculus Ras-related GTP binding C (Rragc), mRNA
  • Ras-related GTP binding C
    		• 54170
    		NM_017475  
    GeneNetwork    		 220922  
    		   4 D 2
    1581
  • Mus musculus YY1 associated factor 2 (Yaf2), mRNA
  • YY1 associated factor 2
    		• 67057
    		NM_024189  
    GeneNetwork    		 4714  
    		   15 F1 2
    1582
  • Mus musculus voltage-dependent anion channel 2 (Vdac2), mRNA
  • Voltage-dependent anion channel 2
    		• 22334
    		NM_011695  
    GeneNetwork    		 262327 [**] 
    		   14 A3|14 2.5 cM 2
    1583
  • Mus musculus phosphoinositide 3 kinase P110delta (Pik3cd) gene, complete cds
  • Calsyntenin 1
    		• 18707
    		AF532989  
    GeneNetwork    		 38993 [**] 
    		   4 2
    1584
  • Mus musculus hydroxysteroid dehydrogenase like 1 (Hsdl1), mRNA
  • Hydroxysteroid dehydrogenase like 1
    		• 72552
    		NM_175185  
    GeneNetwork    		 36756  
    		   8 E1 2
    1585
  • Mus musculus yippee-like 3 (Drosophila) (Ypel3), mRNA
  • Yippee-like 3 (Drosophila)
    		• 66090
    		NM_025347  
    GeneNetwork    		 27114  
    		   7 F3 2
    1586
  • Mus musculus transient receptor potential cation channel, subfamily M, member 7 (Trpm7), mRNA
  • Transient receptor potential cation channel, subfamily M, member 7
    		• 58800
    		NM_021450  
    GeneNetwork    		 244705  
    		   2 F2 2
    1587
  • Mus musculus ribonuclease P 14 subunit (human) (Rpp14), mRNA
  • Ribonuclease P 14 subunit (human)
    		• 67053
    		NM_025938  
    GeneNetwork    		 210048  
    		   14 A1 2
    1588
  • Mus musculus RIKEN cDNA 4930570C03 gene (4930570C03Rik), mRNA
  • RIKEN cDNA 4930570C03 gene
    		• 67739
    		NM_026353  
    GeneNetwork    		 28955  
    		   15 F2 2
    1589
  • Mus musculus ATPase, class VI, type 11A, mRNA (cDNA clone IMAGE:5042850), with apparent retained intron
  • ATPase, class VI, type 11A
    		• 50770
    		BC036322  
    GeneNetwork    		 257837  
    		   8 A2 2
    1590
  • PREDICTED: Mus musculus RIKEN cDNA 6820424L24 gene (6820424L24Rik), mRNA
  • Zinc finger protein 518B
    		•   XM_144310  
    GeneNetwork    		 38277  
    		   5 B3 2
    1591
  • Mus musculus disrupted in renal carcinoma 2 (human) (Dirc2), mRNA
  • Disrupted in renal carcinoma 2 (human)
    		• 224132
    		NM_153550  
    GeneNetwork    		 24094  
    		   16 B3 2
    1592
  • Mus musculus RNA binding motif protein 7 (Rbm7), mRNA
  • RNA binding motif protein 7
    		• 67010
    		NM_144948  
    GeneNetwork    		 76911  
    		   9 A5.3 2
    1593
  • Mus musculus citrate synthase (Cs), mRNA
  • Citrate synthase
    		• 12974
    		NM_026444  
    GeneNetwork    		 58836  
    		   10 D3 2
    1594
  • Mus musculus nuclear transcription factor, X-box binding 1 (Nfx1), mRNA
  • Nuclear transcription factor, X-box binding 1
    		• 74164
    		NM_023739  
    GeneNetwork    		 247456  
    		   4 B1|4 19.9 cM 2
    1595
  • Mus musculus capping protein (actin filament), gelsolin-like (Capg), mRNA
  • Capping protein (actin filament), gelsolin-like
    		• 12332
    		NM_007599  
    GeneNetwork    		 18626 [**] 
    		   6 C3 2
    1596
  • Mus musculus zinc finger protein 306 (Zfp306), mRNA
  • Zinc finger with KRAB and SCAN domains 3
    		• 72739
    		NM_023685  
    GeneNetwork    		 296071  
    		   13 A3.1 2
    1597
  • Mus musculus glucose-6-phosphate dehydrogenase X-linked (G6pdx), mRNA
  • Glucose-6-phosphate dehydrogenase X-linked
    		• 14381
    		NM_008062  
    GeneNetwork    		 27210  
    		   X A2-A3|X 30.02 cM 2
    1598
  • PREDICTED: Mus musculus RIKEN cDNA 2810055G20 gene (2810055G20Rik), mRNA
  • RIKEN cDNA 2810055G20 gene
    		•   XM_358496  
    GeneNetwork    		 394688  
    		   16 C3.1 2
    1599
  • Mus musculus arylsulfatase A (Arsa), mRNA
  • Arylsulfatase A
    		• 11883
    		NM_009713  
    GeneNetwork    		 620  
    		   15 E 2
    1600
  • Mus musculus three prime histone mRNA exonuclease 1 (Thex1), mRNA
  • Three prime histone mRNA exonuclease 1
    		• 67276
    		NM_026067  
    GeneNetwork    		 207534  
    		   8 B1.1 2


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