NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List \| Indexed by Chromosomal Position \| Indexed by GO Term \| Tab Delimited	Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display.	View All Data \| << Previous Page \| Next Page >>

Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Mm #175)	Chromosome (UniGene)	Num. Clones
2001	Mus musculus RIKEN cDNA 1200015N20 gene (1200015N20Rik), mRNA RIKEN cDNA 1200015N20 gene	71721	NM_024244 GeneNetwork	19825	10 B5.2	2
2002	Mus musculus cDNA, clone:Y1G0109G23, strand:unspecified Protein phosphatase 2, regulatory subunit B (B56), gamma isoform		AK192619 GeneNetwork	240396	12 F2\|12 57.0 cM	2
2003	Mus musculus promyelocytic leukemia (Pml), transcript variant 2, mRNA Promyelocytic leukemia	18854	NM_178087 GeneNetwork	392123	9 B\|9 32.0 cM	2
2004	Mus musculus ras homolog gene family, member Q (Rhoq), mRNA Ras homolog gene family, member Q	104215	NM_145491 GeneNetwork	826	17 E4\|17 56.0 cM	2
2005	Mus musculus expressed sequence AA536749 (AA536749), transcript variant 1, mRNA Expressed sequence AA536749	26936	NM_201245 GeneNetwork	2402	11 B1.3	2
2006	Mus musculus protein inhibitor of activated STAT 3 (Pias3), transcript variant 1, mRNA Protein inhibitor of activated STAT 3	229615	NM_146135 GeneNetwork	1635	3 F2.1	2
2007	Mus musculus adaptor protein complex AP-1, sigma 1 (Ap1s1), mRNA Adaptor protein complex AP-1, sigma 1	11769	NM_007457 GeneNetwork	833	5 G1	2
2008	PREDICTED: Mus musculus fetal Alzheimer antigen (Falz), mRNA Bromodomain PHD finger transcription factor		XM_126724 GeneNetwork	343986	11 E1	2
2009	Mus musculus RIKEN cDNA B930093C12 gene (B930093C12Rik), mRNA Ankyrin repeat domain 13b	268445	NM_172945 GeneNetwork	39296	11 B5	2
2010	Mus musculus RIKEN cDNA 2700088M22 gene (2700088M22Rik), mRNA Zinc finger CCHC-type and RNA binding motif 1	67197	NM_026025 GeneNetwork	293181	15 F1	2
2011	PREDICTED: Mus musculus spermidine/spermine N1-acetyl transferase 2 (Sat2), mRNA Spermidine/spermine N1-acetyl transferase 2		XM_181304 GeneNetwork	340410	11 B4	2
2012	Mus musculus C1GALT1-specific chaperone 1 (C1galt1c1), mRNA C1GALT1-specific chaperone 1	59048	NM_021550 GeneNetwork	441410	X A2	2
2013	Mus musculus THO complex 1 (Thoc1), mRNA Ubiquitin specific peptidase 14	225160	NM_153552 GeneNetwork	219648	18 A1\|18 2.0 cM	2
2014	Mus musculus parvin, alpha (Parva), mRNA Parvin, alpha	57342	NM_020606 GeneNetwork	143763	7 F1	2
2015	Mus musculus isochorismatase domain containing 1 (Isoc1), mRNA Isochorismatase domain containing 1 Transcribed locus	66307	NM_025478 GeneNetwork	182574 458053	18 D2 18	2
2016	Mus musculus calsyntenin 1 (Clstn1), mRNA Calsyntenin 1	65945	NM_023051 GeneNetwork	38993 [**]	4	2
2017	Mus musculus chaperone, ABC1 activity of bc1 complex like (S. pombe) (Cabc1), mRNA Chaperone, ABC1 activity of bc1 complex like (S. pombe)	67426	NM_023341 GeneNetwork	38330	1 H4	2
2018	Mus musculus methyl CpG binding protein 2 (Mecp2), mRNA Methyl CpG binding protein 2	17257	NM_010788 GeneNetwork	131408	X A7.3\|X 29.6 cM	2
2019	Mus musculus calcium/calmodulin-dependent protein kinase I (Camk1), mRNA Calcium/calmodulin-dependent protein kinase I	52163	NM_133926 GeneNetwork	277373	6 E3\|6 48.7 cM	2
2020	Mus musculus cDNA sequence BC038479 (BC038479), mRNA CDNA sequence BC038479	244757	NM_153803 GeneNetwork	293696	9 A4	2
2021	Mus musculus casein kinase 1, delta (Csnk1d), transcript variant 2, mRNA Casein kinase 1, delta	104318	NM_027874 GeneNetwork	216227	11 E2	2
2022	Mus musculus polymerase (RNA) III (DNA directed) polypeptide E (Polr3e), mRNA Polymerase (RNA) III (DNA directed) polypeptide E	26939	NM_025298 GeneNetwork	193632	7 F3	2
2023	Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430029I05 product:unknown EST, full insert sequence Transcribed locus		AK052462 GeneNetwork	33908	13	2
2024	Mus musculus SRB7 (supressor of RNA polymerase B) homolog (S. cerevisiae) (Surb7), mRNA Mediator complex subunit 21	108098	NM_025315 GeneNetwork	26212	6 G3	2
2025	Mus musculus coatomer protein complex, subunit gamma (Copg), transcript variant 1, mRNA Coatomer protein complex, subunit gamma	54161	NM_017477 GeneNetwork	258785	6 D1\|6 38.0 cM	2
2026	Mus musculus CCR4-NOT transcription complex, subunit 7 (Cnot7), mRNA CCR4-NOT transcription complex, subunit 7	18983	NM_011135 GeneNetwork	272551	8 A4	2
2027	Mus musculus septin 7 (Sept7), mRNA Septin 7	235072	NM_009859 GeneNetwork	270259	9 A4	2
2028	Mus musculus TBC1 domain family, member 10b (Tbc1d10b), mRNA TBC1 domain family, member 10b	68449	NM_144522 GeneNetwork	41420	7 F4	2
2029	Mus musculus RIKEN cDNA 3110062M04 gene (3110062M04Rik), mRNA Transmembrane protein 140	78412	NM_199145 GeneNetwork	248440	6 B1	2
2030	Mus musculus cathepsin F (Ctsf), mRNA Cathepsin F	56464	NM_019861 GeneNetwork	29561	19 A	2
2031	Mus musculus mitochondrial carrier triple repeat 1 (Mcart1), mRNA Mitochondrial carrier triple repeat 1	230125	NM_001009949 GeneNetwork	260210	4 B1	2
2032	Mus musculus RIKEN cDNA 1810017G16 gene (1810017G16Rik), mRNA Trafficking protein particle complex 2-like	59005	NM_021502 GeneNetwork	38746	8 E1	2
2033	Mus musculus coenzyme Q2 homolog, prenyltransferase (yeast) (Coq2), mRNA Coenzyme Q2 homolog, prenyltransferase (yeast)	71883	NM_027978 GeneNetwork	260661	5 E3	2
2034	Mus musculus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d (Atp5h), mRNA PREDICTED: Mus musculus similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d, transcript variant 2 (LOC100039281), mRNA	71679	NM_027862 GeneNetwork	182042	15 A1	2
2035	Mus musculus methionine aminopeptidase 2 (Metap2), mRNA Methionine aminopeptidase 2	56307	NM_019648 GeneNetwork	289329	10 C2	2
2036	Mus musculus RIKEN cDNA 0610007C21 gene (0610007C21Rik), transcript variant 1, mRNA RIKEN cDNA 0610007C21 gene	381629	NM_027855 GeneNetwork	28144	5 B1	2
2037	Mus musculus cytokine inducible SH2-containing protein (Cish), mRNA Cytokine inducible SH2-containing protein	12700	NM_009895 GeneNetwork	4592	9 F1\|9 59.0 cM	2
2038	Mus musculus cDNA sequence BC037708 (BC037708), mRNA Intraflagellar transport 52 homolog (Chlamydomonas)	245866	NM_172150 GeneNetwork	34034	2 H2	2
2039	Mus musculus, clone IMAGE:5367713, mRNA Expressed sequence AV009015		BC030358 GeneNetwork	86217	10	2
2040	Mus musculus vascular endothelial growth factor A (Vegfa), transcript variant 1, mRNA Vascular endothelial growth factor A	22339	NM_001025250 GeneNetwork	282184	17 C\|17 24.2 cM	2
2041	Mus musculus procollagen, type XV (Col15a1), mRNA Collagen, type XV	12819	NM_009928 GeneNetwork	233547	4 B1-B3	2
2042	Mus musculus nuclear factor, erythroid derived 2, like 2 (Nfe2l2), mRNA Nuclear factor, erythroid derived 2, like 2	18024	NM_010902 GeneNetwork	1025	2 C3\|2 45.0 cM	2
2043	Mus musculus nemo like kinase (Nlk), mRNA Nemo like kinase	18099	NM_008702 GeneNetwork	9001	11 B5	2
2044	Mus musculus acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) (Acaa2), mRNA Acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	52538	NM_177470 GeneNetwork	245724	18 E2\|18 45.0 cM	2
2045	Mus musculus solute carrier family 12, member 6 (Slc12a6), transcript variant 1, mRNA Transmembrane protein 85 RIKEN cDNA 2410042D21 gene	107723	NM_133648 GeneNetwork	220942 46449 [**]	2 E4 2 E4	2
2046	Mus musculus cytidine 5'-triphosphate synthase 2 (Ctps2), mRNA Cytidine 5'-triphosphate synthase 2	55936	NM_018737 GeneNetwork	2065	X F5	2
2047	PREDICTED: Mus musculus RNA binding motif protein 16 (Rbm16), mRNA RNA binding motif protein 16	106583	XM_619423 GeneNetwork	124373	17 A1	2
2048	Mus musculus spermidine synthase (Srm), mRNA Spermidine synthase	20810	NM_009272 GeneNetwork	10	4 E2	2
2049	Mus musculus SPARC related modular calcium binding 1 (Smoc1), mRNA SPARC related modular calcium binding 1	64075	NM_022316 GeneNetwork	273295	12 D1	2
2050	Mus musculus RIKEN cDNA 2310044H10 gene (2310044H10Rik), mRNA RIKEN cDNA 2310044H10 gene	69683	NM_197991 GeneNetwork	294759 [**]	7 B4	2
2051	Mus musculus, clone IMAGE:5400381, mRNA		BC030497 GeneNetwork	441955 [**]	15	2
2052	Mus musculus polymerase (RNA) II (DNA directed) polypeptide J (Polr2j), mRNA Polymerase (RNA) II (DNA directed) polypeptide J	20022	NM_011293 GeneNetwork	4896	5 G1	2
2053	Mus musculus 5'-nucleotidase, cytosolic III (Nt5c3), mRNA 5'-nucleotidase, cytosolic III	107569	NM_026004 GeneNetwork	158936	6 B3	2
2054	Mus musculus sulfiredoxin 1 homolog (S. cerevisiae) (Srxn1), mRNA Sulfiredoxin 1 homolog (S. cerevisiae)	76650	NM_029688 GeneNetwork	218639	2 H1	2
2055	Mus musculus retinol dehydrogenase 14 (all-trans and 9-cis) (Rdh14), mRNA Retinol dehydrogenase 14 (all-trans and 9-cis)	105014	NM_023697 GeneNetwork	119343	12 A1.1	2
2056	Mus musculus mastermind like 1 (Drosophila) (Maml1), mRNA Transcribed locus Mastermind like 1 (Drosophila)	103806	NM_175334 GeneNetwork	466000 51116	11 11 B1.3	2
2057	Mus musculus ephrin B2 (Efnb2), mRNA Ephrin B2	13642	NM_010111 GeneNetwork	209813	8 A1.1\|8 2.0 cM	2
2058	Mus musculus fatty acid binding protein 7, brain (Fabp7), mRNA Fatty acid binding protein 7, brain	12140	NM_021272 GeneNetwork	3644	10 B4	2
2059	Mus musculus RIKEN cDNA 2700083E18 gene (2700083E18Rik), mRNA Mex3 homolog A (C. elegans)	72640	NM_001029890 GeneNetwork	275154	3 F1	2
2060	Mus musculus Eph receptor B4 (Ephb4), mRNA Eph receptor B4	13846	NM_010144 GeneNetwork	34533	5 G2	2
2061	Mus musculus expressed sequence AI837181 (AI837181), mRNA Expressed sequence AI837181	107242	NM_134149 GeneNetwork	329658	19 A	2
2062	Mus musculus Max interacting protein 1 (Mxi1), transcript variant 2, mRNA Max interacting protein 1	17859	NM_001008542 GeneNetwork	2154	19 D\|19 49.5 cM	2
2063	Mus musculus 3'-phosphoadenosine 5'-phosphosulfate synthase 1 (Papss1), mRNA 3'-phosphoadenosine 5'-phosphosulfate synthase 1	23971	NM_011863 GeneNetwork	244912 [**]	3 G3\|3 64.5 cM	2
2064	Mus musculus retinitis pigmentosa 9 homolog (human) (Rp9h), mRNA Retinitis pigmentosa 9 (human)	55934	NM_018739 GeneNetwork	38235	9 A4	2
2065	Mus musculus engulfment and cell motility 3, ced-12 homolog (C. elegans) (Elmo3), mRNA Engulfment and cell motility 3, ced-12 homolog (C. elegans)	234683	NM_172760 GeneNetwork	237966	8 D3	2
2066	Mus musculus RIKEN cDNA 2010208K18 gene (2010208K18Rik), mRNA RIKEN cDNA 2010208K18 gene	72096	NM_028095 GeneNetwork	28631	7 F4	2
2067	Rattus norvegicus TAO kinase 1 (Taok1), mRNA TAO kinase 1	286993	NM_173327 GeneNetwork	340436	11 B5	2
2068	Mus musculus procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein (Col4a3bp), mRNA Collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	68018	NM_023420 GeneNetwork	24125	13 D1	2
2069	Mus musculus leprecan 1 (Lepre1), transcript variant 1, mRNA Leprecan 1	56401	NM_019782 GeneNetwork	27961	4 D1	2
2070	Mus musculus arrestin domain containing 3 (Arrdc3), mRNA Arrestin domain containing 3		NM_178917 GeneNetwork	423137	13 C3	2
2071	Mus musculus transforming growth factor, beta 3 (Tgfb3), mRNA Transforming growth factor, beta 3	21809	NM_009368 GeneNetwork	3992	12 D2\|12 41.0 cM	2
2072	Mus musculus ring finger protein 141 (Rnf141), mRNA Ring finger protein 141	67150	NM_025999 GeneNetwork	96867	7 F2	2
2073	Mus musculus TATA box binding protein-like 1 (Tbpl1), mRNA TATA box binding protein-like 1	237336	NM_011603 GeneNetwork	86670	10 A3	2
2074	Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230112K18 product:unknown EST, full insert sequence Polybromo 1	66923	AK020971 GeneNetwork	27913 [**]	14 B	2
2075	Mus musculus unc-84 homolog A (C. elegans) (Unc84a), mRNA Unc-84 homolog A (C. elegans)	77053	NM_024451 GeneNetwork	210845	5 G1	2
2076	Mus musculus high mobility group box 3 (Hmgb3), mRNA High mobility group box 3	15354	NM_008253 GeneNetwork	336087	X A1	2
2077	Mus musculus special AT-rich sequence binding protein 2 (Satb2), mRNA Special AT-rich sequence binding protein 2	212712	NM_139146 GeneNetwork	145599	1 C1.3	2
2078	Mus musculus CREBBP/EP300 inhibitory protein 1 (Cri1), mRNA EP300 interacting inhibitor of differentiation 1	58521	NM_025613 GeneNetwork	425101	2 F1	2
2079	Mus musculus endoplasmic reticulum protein 29 (Erp29), mRNA Endoplasmic reticulum protein 29	67397	NM_026129 GeneNetwork	154570	5 F	2
2080	Mus musculus Bri3 binding protein (Bri3bp), mRNA Bri3 binding protein	76809	NM_029752 GeneNetwork	290720	5 F	2
2081	Mus musculus RIKEN cDNA 2810037C03 gene (2810037C03Rik), mRNA GINS complex subunit 4 (Sld5 homolog)	109145	NM_024240 GeneNetwork	27945	8 A3	2
2082	Mus musculus PCTAIRE-motif protein kinase 2, mRNA (cDNA clone MGC:69968 IMAGE:6516981), complete cds PCTAIRE-motif protein kinase 2	237459	BC064815 GeneNetwork	217404	10 C2	2
2083	Mus musculus RIKEN cDNA 9430029L20 gene, mRNA (cDNA clone IMAGE:1313887), with apparent retained intron RIKEN cDNA 9430029L20 gene RIKEN cDNA 9430029L20 gene	109249	BC030682 GeneNetwork	271301 409148	7 B5 7 B5	2
2084	Mouse tau microtubule binding protein mRNA, complete cds Microtubule-associated protein tau	17762	M18776 GeneNetwork	1287	11 E1\|11 64.0 cM	2
2085	Mus musculus cDNA, clone:Y0G0105I01, strand:unspecified Max dimerization protein 4		AK178119 GeneNetwork	391777	5 B2\|5 20.0 cM	2
2086	Mus musculus tumor necrosis factor receptor superfamily, member 1a (Tnfrsf1a), mRNA Tumor necrosis factor receptor superfamily, member 1a	21937	NM_011609 GeneNetwork	1258	6 F3\|6 60.55 cM	2
2087	Mus musculus RIKEN cDNA C130038G02 gene (C130038G02Rik), mRNA RIKEN cDNA C130038G02 gene	77521	NM_029920 GeneNetwork	244177	5 G3	2
2088	PREDICTED: Mus musculus cDNA sequence BC043476 (BC043476), mRNA CDNA sequence BC043476	381067	XM_354987 GeneNetwork	254463	17 A3.3	2
2089	Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933440L10 product:hypothetical protein, full insert sequence Suppression of tumorigenicity 7-like		AK030273 GeneNetwork	206379	3 F2.2	2
2090	Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130202N22 product:insulin degrading enzyme, full insert sequence Insulin degrading enzyme	15925	AK078930 GeneNetwork	28366	19 C2\|19 25.0 cM	2
2091	Mus musculus thimet oligopeptidase 1 (Thop1), mRNA Thimet oligopeptidase 1	50492	NM_022653 GeneNetwork	26995	10 C1\|10 43.0 cM	2
2092	Mus musculus cell division cycle 27 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:2609242), partial cds Cell division cycle 27 homolog (S. cerevisiae)	217232	BC040245 GeneNetwork	89845	11 E1\|11 63.0 cM	2
2093	Mus musculus hairy/enhancer-of-split related with YRPW motif-like (Heyl), mRNA Hairy/enhancer-of-split related with YRPW motif-like	56198	NM_013905 GeneNetwork	103615	4 D2.2	2
2094	Mus musculus phosphofructokinase, muscle (Pfkm), mRNA Phosphofructokinase, muscle	18642	NM_021514 GeneNetwork	272582	15 F1	2
2095	PREDICTED: Mus musculus RIKEN cDNA 5430432P15 gene (5430432P15Rik), mRNA Tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2		XM_129246 GeneNetwork	249310	19 C2	2
2096	Mus musculus proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 (Psmd10), mRNA Proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	53380	NM_016883 GeneNetwork	17640	X F1	2
2097	Mus musculus HLA-B associated transcript 2 (Bat2), mRNA HLA-B associated transcript 2	53761	NM_020027 GeneNetwork	272462	17 B1\|17 19.04 cM	2
2098	Mus musculus dehydrogenase/reductase (SDR family) member 7 (Dhrs7), mRNA Dehydrogenase/reductase (SDR family) member 7	66375	NM_025522 GeneNetwork	289653	12 C3	2
2099	Mus musculus mitochondrial ribosomal protein S36 (Mrps36), mRNA Mitochondrial ribosomal protein S36 Transcribed locus, strongly similar to NP_079645.1 mitochondrial ribosomal protein S36 [Mus musculus]	66128	NM_025369 GeneNetwork	306173 391927	13 D1 17	2
2100	Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930009J23 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence Solute carrier family 25, member 36 Solute carrier family 25, member 36	192287	AK046989 GeneNetwork	228067 466084	9 E3.3 9 E3.3	2

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