Selective Bibliography of Dr. Tom Schneider
CCR Nanobiology Program, NCI

"More Molecular Information Theory"
Wednesday, January 14, 2009

1. Inui H, Oh KS, Nadem C, Ueda T, Khan SG, Metin A, Gozukara E, Emmert S, Slor H, Busch DB, Baker CC, DiGiovanna JJ, Tamura D, Seitz CS, Gratchev A, Wu WH, Chung KY, Chung HJ, Azizi E, Woodgate R, Schneider TD, Kraemer KH
Xeroderma pigmentosum-variant patients from America, Europe, and Asia
JOURNAL OF INVESTIGATIVE DERMATOLOGY 128 (8):2055-2068 Aug 2008

2. Lyakhov IG, Krishnamachari A, Schneider TD
Discovery of novel tumor suppressor p53 response elements using information theory
NUCLEIC ACIDS RESEARCH 36 (11):3828-3833 Jun 2008

3. Chen Z, Lewis KA, Shultzaberger RK, Lyakhov IG, Zheng M, Doan B, Storz G, Schneider TD
Discovery of Fur binding site clusters in Escherichia coli by information theory models
NUCLEIC ACIDS RESEARCH 35 (20):6762-6777 2007

4. Shultzaberger RK, Roberts LR, Lyakhov IG, Sidorov IA, Stephen AG, Fisher RJ, Schneider TD
Correlation between binding rate constants and individual information of E. coli Fis binding sites
NUCLEIC ACIDS RESEARCH 35 (16):5275-5283 2007

5. Shultzaberger RK, Chen Z, Lewis KA, Schneider TD
Anatomy of Escherichia coli sigma70 promoters
NUCLEIC ACIDS RESEARCH 35 (3):771-788 2007

6. Bindewald E, Schneider TD, Shapiro BA
CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments
NUCLEIC ACIDS RESEARCH 34 (Web Server issue):W405-W411 Jul 1 2006

7. Schneider TD
Claude Shannon: biologist. The founder of information theory used biology to formulate the channel capacity
IEEE ENGINEERING IN MEDICINE AND BIOLOGY MAGAZINE 25 (1):30-33 Jan 2006

8. Chen Z, Schneider TD
Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands
NUCLEIC ACIDS RESEARCH 34 (4):1133-1147 2006

9. Schneider TD
Twenty Years of Delila and Molecular Information Theory: The Altenberg-Austin Workshop in Theoretical Biology Biological Information, Beyond Metaphor: Causality, Explanation, and Unification Altenberg, Austria, 11-14 July 2002
BIOLOGICAL THEORY 1 (3):250-260 2006

10. Khan SG, Metin A, Gozukara E, Inui H, Shahlavi T, Muniz-Medina V, Baker CC, Ueda T, Aiken JR, Schneider TD, Kraemer KH
Two essential splice lariat branchpoint sequences in one intron in a xeroderma pigmentosum DNA repair gene: mutations result in reduced XPC mRNA levels that correlate with cancer risk
HUMAN MOLECULAR GENETICS 13 (3):343-352 Feb 1 2004

Created 12/17/08