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Selective Bibliography of
Dr. Sean R. Eddy "HMMER:
A New Generation of Homology Search Software" The Pfam protein families database NUCLEIC ACIDS RESEARCH 36 (Database issue):D281-D288 Jan 2008 2. Nawrocki EP, Eddy SR Query-dependent banding (QDB) for faster RNA similarity searches PLOS COMPUTATIONAL BIOLOGY 3 (3):e56 Mar 30 2007 3. Eddy SR Genetics. Total information awareness for worm genetics SCIENCE 311 (5766):1381-1382 Mar 10 2006 4. Finn RD, Mistry J, Schuster-Bockler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A Pfam: clans, web tools and services NUCLEIC ACIDS RESEARCH 34 (Database issue):D247-D251 Jan 1 2006 5. Dowell RD, Eddy SR Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints BMC BIOINFORMATICS 7400 2006 6. Eddy SR Computational analysis of RNAs COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 71117-128 2006 7. Eddy SR "Antedisciplinary" science PLOS COMPUTATIONAL BIOLOGY 1 (1):e6 Jun 2005 8. Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes GENES & DEVELOPMENT 19 (8):903-918 Apr 15 2005 9. Hillier LW, Graves TA, Fulton RS, Fulton LA, Pepin KH, Minx P, Wagner-McPherson C, Layman D, Wylie K, Sekhon M, Becker MC, Fewell GA, Delehaunty KD, Miner TL, Nash WE, Kremitzki C, Oddy L, Du H, Sun H, Bradshaw-Cordum H, Ali J, Carter J, Cordes M, Harris A, Isak A, van BA, Nguyen C, Du F, Courtney L, Kalicki J, Ozersky P, Abbott S, Armstrong J, Belter EA, Caruso L, Cedroni M, Cotton M, Davidson T, Desai A, Elliott G, Erb T, Fronick C, Gaige T, Haakenson W, Haglund K, Holmes A, Harkins R, Kim K, Kruchowski SS, Strong CM, Grewal N, Goyea E, Hou S, Levy A, Martinka S, Mead K, McLellan MD, Meyer R, Randall-Maher J, Tomlinson C, uphin-Kohlberg S, Kozlowicz-Reilly A, Shah N, Swearengen-Shahid S, Snider J, Strong JT, Thompson J, Yoakum M, Leonard S, Pearman C, Trani L, Radionenko M, Waligorski JE, Wang C, Rock SM, Tin-Wollam AM, Maupin R, Latreille P, Wendl MC, Yang SP, Pohl C, Wallis JW, Spieth J, Bieri TA, Berkowicz N, Nelson JO, Osborne J, Ding L, Meyer R, Sabo A, Shotland Y, Sinha P, Wohldmann PE, Cook LL, Hickenbotham MT, Eldred J, Williams D, Jones TA, She X, Ciccarelli FD, Izaurralde E, Taylor J, Schmutz J, Myers RM, Cox DR, Huang X, McPherson JD, Mardis ER, Clifton SW, Warren WC, Chinwalla AT, Eddy SR, Marra MA, Ovcharenko I, Furey TS, Miller W, Eichler EE, Bork P, Suyama M, Torrents D, Waterston RH, Wilson RK Generation and annotation of the DNA sequences of human chromosomes 2 and 4 NATURE 434 (7034):724-731 Apr 7 2005 10. Stricklin SL, Griffiths-Jones S, Eddy SR C. elegans noncoding RNA genes WORMBOOK1-7 2005 Created 02/06/08
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