Cancer Genome-Wide Association Scan (caGWAS) |
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Product Description
Cancer Genome-Wide Association Studies (caGWAS) allows researchers to integrate, query, report, and analyze significant associations between genetic variations and disease, drug response or other clinical outcomes. New breakthroughs in SNP array technologies make it possible to genotype hundreds of thousands of single nucleotide polymorphisms (SNPs) simultaneously, enabling whole genome association studies. Within the Clinical Genomic Object Model (CGOM), the caIntegrator team created a domain model for Whole Genome Association Study Analysis. CGOM-caGWAS is a semantically annotated domain model that captures associations between Study, Study Participant, Disease, SNP Association Analysis, SNP Population Frequency and SNP annotations. Following the principals of caBIG, caGWAS APIs and web portal provide:
Brochures, Presentations, & Demos
caGWAS Demonstration – 22-minute Audio over Slides and Screencast (make sure your speakers are on to play audio). Documentation & Training
Access the caBIG™ Learning Management System to learn about training programs, register for classes, track your progress, and stay informed about training offerings. We invite you to explore the catalog to see what is available. You will need to create an account before registering for classes. Installation Guide (491 KB) last updated 02/27/08 Tool Download Files
caGWAS 1.0.0 Zip file (231.67 MB) last updated on 02/27/2008 Technical Information
Tool Maturity Assessment: Stable Release (Adoption in Progress) Installation Level: Intermediate - technical assistance may be required, download may require supporting infrastructure or software System Requirements: The caGWAS has been tested on Linux Red Hat Enterprise Linux AS 4 64/32-bit (for AMD chipset) and the Windows XP/2003 environments. While the application may work in other Linux and Windows environments, it has only been tested in these environments.
Developer Institution(s)
NCICB |
User Support Resources
ICR Workspace Coordinator: Elaine Freund efreund@3rdmill.com NCICB Applications Support ncicb@pop.nci.nih.gov |