Program Help

View table of all program help

1dcat: Usage: 1dcat a.1D b.1D ...

 

1ddot: Usage: 1ddot [options] 1Dfile 1Dfile ...

 

1deval: Usage: 1deval [options] -expr 'expression'

 

1dfft: Usage: 1dfft [options] infile outfile

 

1dgrayplot: Usage: 1dgrayplot [options] tsfile

 

1dnorm: Usage: 1dnorm infile outfile

 

1dplot: Usage: 1dplot [options] tsfile ...

 

1dsvd

 

24swap: Usage: 24swap [options] file ...

 

2dImReg

 

2swap

 

3dAFNIto3D: Usage: 3dAFNIto3D [options] dataset

 

3dAFNItoANALYZE: Usage: 3dAFNItoANALYZE [-4D] [-orient code] aname dset

 

3dAFNItoMINC: Usage: 3dAFNItoMINC [options] dataset

 

3dAFNItoNIFTI: Usage: 3dAFNItoNIFTI [options] dataset

 

3dAFNItoNIML: Usage: 3dAFNItoNIML [options] dset

 

3dANALYZEtoAFNI: Usage: 3dANALYZEtoAFNI [options] file1.hdr file2.hdr ...

 

3dANOVA

 

3dANOVA2

 

3dANOVA3

 

3dAnatNudge: Usage: 3dAnatNudge [options]

 

3dAnhist: Usage: 3dAnhist [options] dataset

 

3dAttribute: Usage: 3dAttribute [options] aname dset

 

3dAutoTcorrelate: Usage: 3dAutoTcorrelate [options] dset

 

3dAutobox: Usage: 3dAutobox dataset

 

3dAutomask: Usage: 3dAutomask [options] dataset

 

3dBRAIN_VOYAGERtoAFNI: Usage: 3dBRAIN_VOYAGERtoAFNI -input BV_VOLUME.vmr

 

3dCM: Usage: 3dCM [options] dset

 

3dCRUISEtoAFNI: Usage: 3dCRUISEtoAFNI -input CRUISE_HEADER.dx

 

3dClipLevel: Usage: 3dClipLevel [options] dataset

 

3dConvolve

 

3dDTeig: Usage: 3dDTeig [options] dataset

 

3dDWItoDT: Usage: 3dDWItoDT [options] gradient-file dataset

 

3dDeconvolve

 

3dDeconvolve_f

 

3dDespike: Usage: 3dDespike [options] dataset

 

3dDetrend: Usage: 3dDetrend [options] dataset

 

3dEntropy: Usage: 3dEntropy dataset ...

 

3dExtrema: Usage: 3dExtrema options datasets

 

3dFDR: Usage: 3dFDR [options] dataset

3dFWHM: Usage: 3dFWHM -dset dataset

3dFourier: Usage: 3dFourier [options] dataset

 

3dFriedman

 

3dIntracranial

 

3dKruskalWallis

 

3dLRflip: Usage: 3dLRflip [-prefix ppp] dataset

 

3dMINCtoAFNI: Usage: 3dMINCtoAFNI [-prefix ppp] dataset.mnc

 

3dMannWhitney

 

3dMax: Usage: 3dMax [options] dataset

 

3dMean: Usage: 3dMean [options] dset dset ...

 

3dMedianFilter: Usage: 3dMedianFilter [options] dataset

 

3dNLfim

 

3dNotes: Usage: 3dNotes [-a "string"] [-h "string"][-d num] [-help] dataset

 

3dOverlap: Usage: 3dOverlap [options] dset1 dset2 ...

 

3dROIstats: Usage: 3dROIstats -mask[n] mset [options] datasets

 

3dRegAna

 

3dRowFillin: Usage: 3dRowFillin [options] dataset

 

3dSkullStrip

 

3dSpatNorm: Usage: 3dSpatNorm [options] dataset

 

3dStatClust: Usage: 3dStatClust options datasets

 

3dSurf2Vol: usage: 3dSurf2Vol [options] -spec SPEC_FILE -surf_A SURF_NAME

 

3dSurfMask: Usage: 3dSurfMask <-i_TYPE SURFACE> <-prefix PREFIX>

 

3dSurfMaskDump

 

3dTSgen

 

3dTagalign: Usage: 3dTagalign [options] dset

 

3dTcat

 

3dTcorrelate: Usage: 3dTcorrelate [options] xset yset

 

3dThreetoRGB: Usage #1: 3dThreetoRGB [options] dataset

 

3dToutcount: Usage: 3dToutcount [options] dataset

 

3dTqual: Usage: 3dTqual [options] dataset

 

3dTshift: Usage: 3dTshift [options] dataset

 

3dTsmooth: Usage: 3dTsmooth [options] dataset

 

3dTstat: Usage: 3dTstat [options] dataset

 

3dUndump: Usage: 3dUndump [options] infile ...

 

3dUniformize

 

3dVol2Surf: usage: 3dVol2Surf [options] -spec SPEC_FILE -sv SURF_VOL

 

3dWarp: Usage: 3dWarp [options] dataset

 

3dWarpDrive: Usage: 3dWarpDrive [options] dataset

 

3dWavelets

 

3dWilcoxon

 

3dWinsor: Usage: 3dWinsor [options] dataset

 

3dZcat: Usage: 3dZcat [options] dataset dataset ...

 

3dZcutup: Usage: 3dZcutup [options] dataset

 

3dZeropad: Usage: 3dZeropad [options] dataset

 

3dZregrid: Usage: 3dZregrid [option] dataset

 

3daxialize: Usage: 3daxialize [options] dataset

 

3dbuc2fim: Usage: 3dbucket options

 

3dbucket

 

3dcalc

 

3dclust: Usage: 3dclust [editing options] [other options] rmm vmul dset ...

 

3dcopy: Usage 1: 3dcopy [-verb] [-denote] old_prefix new_prefix

 

3ddelay

 

3ddot: Usage: 3ddot [options] dset1 dset2

 

3ddup: Usage: 3ddup [options] dataset

 

3dfimplus

 

3dfim: Usage: 3dfim [-im1 num] -input fname -prefix name

 

3dfractionize

 

3dhistog: Usage: 3dhistog [editing options] [histogram options] dataset

 

3dinfo: Usage: 3dinfo [-verb OR -short] dataset [dataset ...]

 

3dmaskave

 

3dmaskdump

 

3dmerge

 

3dnewid

 

3dnoise: Usage: 3dnoise [-blast] [-snr fac] [-nl x ] datasets ...

 

3dnvals

 

3dpc

 

3dproject

 

3drefit

 

3drename

 

3dresample

 

3dretroicor

 

3drotate

 

3dttest

 

3dvolreg

 

4swap

 

4Daverage

 

Align_Centers

 

CommandGlobb

 

GetAfniPrefix

 

GetAfniView

 

NoExt

 

RenamePanga

 

SUMA_AlignToExperiment

 

SUMA_Make_Spec_FS

 

SUMA_Make_Spec_SF

 

UpdateAfni

 

make_stim_file

 

AlphaSim

 

CompareSurfaces

 

ConvertDset

 

ConvertSurface

 

ConvexHull

 

CreateIcosahedron

 

FD2

 

FSread_annot

 

Ifile

 

Imon

 

IsoSurface

 

MakeColorMap

 

MapIcosahedron

 

ROI2dataset

 

RSFgen

 

SampBias

 

ScaleToMap

 

SurfClust

 

SurfMeasures

 

SurfMesh

 

SurfPatch

 

SurfQual

 

SurfSmooth

 

SurfToSurf

 

SurfaceMetrics

 

Vecwarp

 

Xphace

 

abut

 

adwarp

 

afni

afni

afni_vcheck

 

aiv

 

byteorder

 

cat_matvec

 

ccalc

 

cdf

 

cjpeg

 

count

 

dicom_hdr

 

dicom_to_raw

 

djpeg

 

ent16

 

fftest

 

file_tool

 

fim2

 

float_scan

 

from3d

 

ftosh

 

ge_header

 

imand

 

imaver

 

imcalc

 

imcutup

 

imdump

 

immask

 

imreg

 

imrotate

 

imstack

 

imstat

 

imupsam

 

inspec

 

mayo_analyze

 

mpeg_encode

 

mpegtoppm

 

mritopgm

 

nifti1_test

 

nifti_stats

 

nifti_tool

 

nsize

 

p2t

 

plugout_drive

 

plugout_ijk

 

plugout_tt

 

quickspec

 

rmz

 

rotcom

 

rtfeedme

 

serial_helper

 

sfim

 

siemens_vision

 

sqwave

 

strblast

 

suma

 

suma_change_spec

 

tfim

 

to3d

 

waver

 

whereami

 

whirlgif

 

AFNI program -help files