NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
2701
  • Mus musculus RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA
  • RIKEN cDNA 1300018I05 gene
    		• 74157
    		NM_028791  
    GeneNetwork    		 469958  
    		   17 A3.3 2
    2702
  • Mus musculus RIKEN cDNA E230022H04 gene (E230022H04Rik), mRNA
  • AMME chromosomal region gene 1-like
    		• 225339
    		NM_153515  
    GeneNetwork    		 290804  
    		   18 B1 2
    2703
  • Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833408C14 product:unknown EST, full insert sequence
  • Alpha thalassemia/mental retardation syndrome X-linked homolog (human)
    		• 22589
    		AK014663  
    GeneNetwork    		 10141  
    		   X D|X 43.8 cM 2
    2704
  • Mus musculus isoleucine-tRNA synthetase (Iars), mRNA
  • Isoleucine-tRNA synthetase
    		• 105148
    		NM_172015  
    GeneNetwork    		 21118  
    		   13 A5 2
    2705
  • Mus musculus ash1 (absent, small, or homeotic)-like (Drosophila) (Ash1l), mRNA
  • Ash1 (absent, small, or homeotic)-like (Drosophila)
    		• 192195
    		NM_138679  
    GeneNetwork    		 130752  
    		   3 F1 2
    2706
  • Mus musculus RIKEN cDNA 0610042C05 gene (0610042C05Rik), mRNA
  • Required for meiotic nuclear division 1 homolog (S. cerevisiae)
  • Transcribed locus, strongly similar to NP_079619.3 hypothetical protein LOC66084 [Mus musculus]
    		• 66084
    		NM_025343  
    GeneNetwork    		 153111  
    313137  
    		   10 A1
    19    		 2
    2707
  • Mus musculus lysyl oxidase (Lox), mRNA
  • Lysyl oxidase
    		• 16948
    		NM_010728  
    GeneNetwork    		 172  
    		   18 D1|18 29.0 cM 2
    2708
  • Mus musculus N-acylsphingosine amidohydrolase 2 (Asah2), mRNA
  • N-acylsphingosine amidohydrolase 2
    		• 54447
    		NM_018830  
    GeneNetwork    		 104900  
    		   19 C3 2
    2709
  • Mus musculus cDNA sequence BC025600 (BC025600), mRNA
  • Transmembrane protein 119
    		• 231633
    		NM_146162  
    GeneNetwork    		 41681  
    		   5 F 2
    2710
  • Mus musculus ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae) (Ube2b), mRNA
  • Ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
    		• 22210
    		NM_009458  
    GeneNetwork    		 397314  
    		   11 B1.3 2
    2711
  • Mus musculus DNA segment, Chr 11, Wayne State University 99, expressed (D11Wsu99e), mRNA
  • Component of oligomeric golgi complex 1
  • Component of oligomeric golgi complex 1
    		• 28081
    		NM_138598  
    GeneNetwork    		 261620  
    351688  
    		   11
    11    		 2
    2712
  • Mus musculus UDP-glucose pyrophosphorylase 2 (Ugp2), mRNA
  • UDP-glucose pyrophosphorylase 2
    		• 216558
    		NM_139297  
    GeneNetwork    		 28877  
    		   11 A3.1|11 12.0 cM 2
    2713
  • Mus musculus lysyl-tRNA synthetase (Kars), mRNA
  • Lysyl-tRNA synthetase
    		• 85305
    		NM_053092  
    GeneNetwork    		 196544  
    		   8 D3|8 55.0 cM 2
    2714
  • Mus musculus WW domain binding protein 2 (Wbp2), mRNA
  • WW domain binding protein 2
    		• 22378
    		NM_016852  
    GeneNetwork    		 284792  
    		   11 E2 2
    2715
  • Mus musculus RIKEN cDNA 2610017I09 gene (2610017I09Rik), mRNA
  • RIKEN cDNA 2610017I09 gene
    		•   NM_183252  
    GeneNetwork    		 45203  
    		   1 B 2
    2716
  • Mus musculus C1q and tumor necrosis factor related protein 6 (C1qtnf6), mRNA
  • C1q and tumor necrosis factor related protein 6
    		• 72709
    		NM_028331  
    GeneNetwork    		 34776  
    		   15 E1 2
    2717
  • Mus musculus RIKEN cDNA 5930434B04 gene (5930434B04Rik), mRNA
  • RIKEN cDNA 5930434B04 gene
    		• 381356
    		NM_029862  
    GeneNetwork    		 150270  
    		   2 A3 2
    2718
  • Mus musculus COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana) (Cops4), mRNA
  • COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)
    		• 26891
    		NM_012001  
    GeneNetwork    		 957  
    		   5 E4|5 54.0 cM 2
    2719
  • Mus musculus START domain containing 10 (Stard10), mRNA
  • START domain containing 10
    		• 56018
    		NM_019990  
    GeneNetwork    		 28896  
    		   7 E3 2
    2720
  • Mus musculus sideroflexin 1 (Sfxn1), mRNA
  • Sideroflexin 1
    		• 14057
    		NM_027324  
    GeneNetwork    		 134191  
    		   13 B1|13 35.0 cM 2
    2721
  • Mus musculus metastasis associated 1 (Mta1), mRNA
  • Metastasis associated 1
    		• 116870
    		NM_054081  
    GeneNetwork    		 212577  
    		   12 F 2
    2722
  • Mus musculus small nuclear ribonucleoprotein polypeptide G (Snrpg), mRNA
  • Small nuclear ribonucleoprotein polypeptide G
    		• 68011
    		NM_026506  
    GeneNetwork    		 276802  
    		   6 B1 2
    2723
  • Mus musculus RIKEN cDNA 1200013P24 gene (1200013P24Rik), mRNA
  • RIKEN cDNA 1200013P24 gene
    		• 74763
    		NM_029090  
    GeneNetwork    		 133257  
    		   16 A1 2
    2724
  • Mus musculus procollagen, type V, alpha 2 (Col5a2), mRNA
  • Collagen, type V, alpha 2
    		• 12832
    		NM_007737  
    GeneNetwork    		 10299 [**] 
    		   1 C1 2
    2725
  • Early B-cell factor 2
    		•           2
    2726
  • Catenin (cadherin associated protein), delta 1
    		•     35738 [**] 
    		   2 D|2 47.8 cM 2
    2727
  • Collagen, type V, alpha 2
    		•     10299 [**] 
    		   1 C1 2
    2728
  • Nuclear factor I/X
  • Transcribed locus, weakly similar to XP_001250613.1 PREDICTED: hypothetical protein [Bos taurus]
  • Transcribed locus
    		•     391858  
    397498 [**] 
    		   8
    8    		 2
    2729
  • Apolipoprotein D
    		•     2082 [**] 
    		   16 B2|16 21.2 cM 2
    2730
  • Unidentified gi52g06
  • DNA segment, Chr 12, ERATO Doi 553, expressed
    		•     440802 [**] 
    		   12 A1.1 2
    2731
  • Gelsolin
    		•           2
    2732
  • Chromodomain helicase DNA binding protein 4
    		•     333388 [**] 
    		   6 F3|6 58.4 cM 2
    2733
  • Nuclear receptor subfamily 4, group A, member 3
    		•           2
    2734
  • Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
    		•     289630 [**] 
    		   12 A1.3 2
    2735
  • C-terminal binding protein 2
  • Transcribed locus
    		•     389984  
    393986  
    		   7 F3|7 66.0 cM
    7    		 2
    2736
  • Vacuolar protein sorting 53 (yeast)
    		•     46397  
    		   11 B4 2
    2737
  • RIKEN cDNA E330013P04 gene
    		•           2
    2738
  • RIKEN cDNA D930009K15 gene
    		•     21093 [**] 
    		   X 2
    2739
  • Transcribed locus
    		•     100273  
    		   13 2
    2740
  • Unidentified gi78e08
  • Expressed sequence AW490810
    		•     393690  
    		   8 2
    2741
  • Coiled-coil domain containing 50
    		•           2
    2742
  • Guanine nucleotide binding protein, alpha 12
  • Transcribed locus
    		•     439999  
    		   5 2
    2743
  • Predicted gene, EG628870
    		•           2
    2744
  • Fibronectin leucine rich transmembrane protein 2
    		•     341948 [**] 
    		   12 E 2
    2745
  • Unidentified gi71d01
    		•           2
    2746
  • Uronyl-2-sulfotransferase
  • Transcribed locus
    		•     438884  
    		   10 2
    2747
  • Protein phosphatase 1, regulatory (inhibitor) subunit 9A
    		•           2
    2748
  • Unidentified gi68a05
  • DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
    		•     267061 [**] 
    		   9 B|9 26.0 cM 2
    2749
  • CDNA sequence BC010787
    		•     253329  
    		   9 A3 2
    2750
  • Calcium/calmodulin-dependent protein kinase II, delta
  • Transcribed locus
    		•     451617  
    		   3 2
    2751
  • Retinoblastoma binding protein 6
  • RIKEN cDNA 4930413G21 gene
    		•     389936  
    4480  
    		   7 F3
    7    		 2
    2752
  • DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
  • Mus musculus, clone IMAGE:5400381, mRNA
    		•     29644 [**] 
    441955 [**] 
    		   15 E1
    15    		 2
    2753
  • ZW10 interactor
  • Transcribed locus
  • Transcribed locus
    		•     405745  
    445160  
    		   10
    10    		 2
    2754
  • V-raf murine sarcoma 3611 viral oncogene homolog
    		•     220946  
    		   X A2-A3.1|X 6.2 cM 2
    2755
  • Glutathione reductase 1
  • Transcribed locus
    		•     283573 [**] 
    470199  
    		   8 A4|8 18.0 cM
    8    		 2
    2756
  • Karyopherin (importin) alpha 6
    		•     202358  
    		   4 D2.3 2
    2757
  • Lymphoid enhancer binding factor 1
    		•           2
    2758
  • Coiled-coil-helix-coiled-coil-helix domain containing 3
    		•           2
    2759
  • GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
  • Transcribed locus
  • Transcribed locus
    		•     125770 [**] 
    450097  
    453771  
    		   2 E1-H3|2 104.0 cM
    2
    2    		 2
    2760
  • Longevity assurance homolog 6 (S. cerevisiae)
    		•     393211  
    		   2 C2 2
    2761
  • Ubiquitin specific peptidase 25
  • Transcribed locus
    		•     449547  
    		   16 2
    2762
  • Exocyst complex component 4
    		•           2
    2763
  • RIKEN cDNA A130034M23 gene
    		•     8924 [**] 
    		   16 B2 2
    2764
  • Secretory carrier membrane protein 1
  • Transcribed locus
    		•     451626  
    		   13 2
    2765
  • MOB1, Mps One Binder kinase activator-like 1A (yeast)
  • Transcribed locus
    		•     35764  
    392493 [**] 
    409031  
    		   5 E2
    5 E2
    5    		 2
    2766
  • Zinc finger CCCH type containing 14
    		•     25549 [**] 
    		   12 F1 2
    2767
  • CDNA sequence BC030308
    		•     101139 [**] 
    		   2 2
    2768
  • Transferrin
    		•     37214 [**] 
    		   9 F1-F3|9 56.0 cM 2
    2769
  • MACRO domain containing 2
  • Transcribed locus
    		•     451619  
    		   2 2
    2770
  • Transient receptor potential cation channel, subfamily C, member 1
    		•           2
    2771
  • U7 snRNP-specific Sm-like protein LSM11
    		•     249827  
    		   11 B1.1 2
    2772
  • TBC1 domain family, member 4
    		•     320639  
    		   14 E2.3 2
    2773
  • Cytochrome c oxidase, subunit VIIIa
  • Transcribed locus, moderately similar to NP_599172.1 cytochrome c oxidase, subunit VIIIa [Rattus norvegicus]
    		•     14022 [**] 
    443187 [**] 
    		   19 A
    1    		 2
    2774
  • Odd Oz/ten-m homolog 4 (Drosophila)
    		•     254610 [**] 
    391678  
    		   7 E1|7 47.7 cM
    7 E1|7 47.7 cM    		 2
    2775
  • Transcribed locus
    		•     39221  
    		   11 2
    2776
  • RIKEN cDNA 1810044A24 gene
    		•           2
    2777
  • Nitric oxide synthase trafficker
    		•           2
    2778
  • Transcribed locus
    		•           2
    2779
  • RIKEN cDNA D330038O06 gene
    		•     41364  
    		   8 B3.3 2
    2780
  • Unidentified gi249h09
  • Transcribed locus
  • Transcribed locus
    		•     397494  
    458548  
    		   X
    X    		 2
    2781
  • Cullin 1
  • Transcribed locus
    		•     451177  
    87611  
    		   6
    6 B3    		 2
    2782
  • MAX gene associated
    		•     87532 [**] 
    		   2 E5 2
    2783
  • Beta-site APP cleaving enzyme 1
  • Expressed sequence AI842136
    		•     440879 [**] 
    		   9 2
    2784
  • Phosphatidylinositol 4-kinase type 2 alpha
    		•           2
    2785
  • Ubiquitin fusion degradation 1 like
    		•     237594  
    		   16 B1-B4|16 11.75 cM 2
    2786
  • Growth arrest specific 2
    		•     465427 [**] 
    		   7 B5|7 26.8 cM 2
    2787
  • RIKEN cDNA 1110002N22 gene
    		•     18466 [**] 
    		   11 B5|11 47.23 cM 2
    2788
  • Solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
  • Transcribed locus
    		•     420895  
    4676  
    		   8
    8 A4|8 21.0 cM    		 2
    2789
  • Transcribed locus
    		•     454368  
    		   5 2
    2790
  • Unidentified gi206f01
    		•           2
    2791
  • Transcribed locus
    		•     31241  
    461778  
    		   9
    9    		 2
    2792
  • Dipeptidylpeptidase 8
    		•     202749 [**] 
    		   9 D 2
    2793
  • Thioredoxin domain containing 10
    		•           2
    2794
  • Multiple EGF-like-domains 9
    		•           2
    2795
  • ADP-ribosylation factor 3
    		•     221298 [**] 
    		   15 F2 2
    2796
  • Unidentified gi194c01
    		•           2
    2797
  • RIKEN cDNA B430201A12 gene
    		•     69013 [**] 
    		   3 F3 2
    2798
  • Transcribed locus
    		•     257714  
    		   14 2
    2799
  • Protein kinase C binding protein 1
    		•     227598 [**] 
    		   2 H3 2
    2800
  • Unidentified gi182b04
  • Transcribed locus
    		•     447960  
    		   17 2


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