p53:
Discovery of novel tumor suppressor p53 response elements
using information theory
@article{Lyakhov.Schneider-p53-2008,
author = "I. Lyakhov
and K. Annangarachari
and T. D. Schneider",
title = "{Discovery of Novel Tumor Suppressor p53 Response
Elements Using Information Theory}",
journal = "Nucleic Acids Res.",
volume = "36",
pages = "3828--3833",
pmid = "18495754",
year = "2008"}
The fasta files are the data from the original papers. The sequence logos were generated from the aligned sequences. The sequence walker lister map were made using our natural p53 model scanned over the sequences.
| Data Set | sequence file | Delila instructions |
logo postscript | logo PDF | map postscript | map PDF |
| Lyakhov et al. | seq-data.book | seq-data.inst | seq-data-logo.ps | seq-data-logo.pdf | seq-data-map.ps | seq-data-map.pdf |
| Funk et al. | funk.fasta | funk.inst | funk-logo.ps | funk-logo.pdf | funk-map.ps | funk-map.pdf |
| El-Deiry et al. | el-deiry.fasta | el-deiry.inst | el-deiry-logo.ps | el-deiry-logo.pdf | el-deiry-map.ps | el-deiry-map.pdf |
Other pointers:
Schneider Lab
origin: 2008 May 22
updated: 2008 Jul 14