caArray - Array Data Management System |
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Product Description
caArray is an open-source, web and programmatically accessible array data management system. caArray guides the annotation and exchange of array data using a federated model of local installations whose results are shareable across the cancer Biomedical Informatics Grid (caBIG™). caArray furthers translational cancer research through acquisition, dissemination and aggregation of semantically interoperable array data to support subsequent analysis by tools and services on and off the Grid. As array technology advances and matures, caArray will extend its logical library of assay management.
Brochures, Presentations, & Demos
caArray Demonstration – 20-minute Audio over Slides and Screencast (make sure your speakers are on to play audio).
Documentation & Training
Access the caBIG™ Learning Management System to learn about training programs, register for classes, track your progress, and stay informed about training offerings. We invite you to explore the catalog to see what is available. You will need to create an account before registering for classes. Technical Guide (PDF) User's Guide (PDF) Release Notes (TXT) Tool Download Files
NCI hosted caArray 2 application is available on line at: https://array.nci.nih.gov/caarray/ Due to known issues with the behavior of some web applications running under Internet Explorer 6.0, we recommend using Firefox 2.0.0 or higher(http://www.mozilla.com/en-US/). For groups interested in installing caArray 2 locally, the installer is available from the NCICB Download Center: http://ncicb.nci.nih.gov/download/index.jsp GlaxoSmithKline Cancer Cell Line Genomic Profiling Data - genomic profiling (SNP and expression) data provided by GlaxoSmithKline, for over 300 cancer cell lines. Technical Information
Tool Maturity Assessment: Stable Release (Adoption in Progress) Installation Level: Intermediate - technical assistance may be required, download may require supporting infrastructure or software System Requirements: While caArray is a web-based application, it does have a dependent software stack, which includes: MySQL 5.0.27 database; JBoss 4.0.4 (hosts the caArray grid service) and JBoss 4.0.5 (hosts the caArray application); JEMS installer 1.0.2 GA (supports EJB 3.0 specification) Developer Institution(s)
5AM Solutions |
User Support Resources
Molecular Analysis Tools Knowledge Center ICR Workspace Coordinator: Elaine Freund efreund@3rdmill.com NCICB Applications Support ncicb@pop.nci.nih.gov |