Skip Navigation
Bioconductor —
National Cancer Institute   U.S. National Institutes of Health www.cancer.gov
 
Home » Tools » Bioconductor
Bioconductor
Quick Links to Page Contents
Product Summary
Demo Files & Exercises
Documentation & Training
Tool Download Files
End User Support Resources
Related caBIG™ Tools
Developer Institution(s)
Adopter Institution(s)
Related Articles

 
Product Summary
Intended Audiences:
Researchers
Area of Focus: Data Analysis and Statistical Tools Primary Workspace: ICR
Product Description:

Bioconductor is an established open-source collection of software packages for high throughput genome analysis. Packages adapted for caBIG allow preprocessing of microarray data, DNA copy number assessment from gene expression data, and SELDI-TOFF mass spec peak finding.

Current Version Number: Not Yet Released Release Date of Current Version: Not Yet Released
Currently caGrid Enabled? Yes caBIG™ Compatibility Level: Silver
Learn more about Silver Compatibility
Tool Maturity Assessment: Development Phase
Installation Level:
Intermediate - technical assistance may be required, download may require supporting infrastructure or software
Architecture Type:
Other or Not Applicable
System Requirements:

Bioconductor is an R-dependent/associated prgram.  See www.bioconductor.org for background information and the dependent software for the existing open source tool. 

 

End User Support Resources

ICR Workspace Coordinator: Elaine Freund efreund@3rdmill.com

NCICB Applications Support ncicb@pop.nci.nih.gov

 

Related caBIG™ Tools:

caGRID

Related Articles

See Bioconductor Website

 

Demo Files & Exercises

Not Available.

 

Documentation & Training

Scheduled for Publication - Spring 2007

 

Tool Download Files

Not yet released.   R software package will be required as a dependent piece.

 

Developer Institution(s)

Fred Hutchinson Cancer Research Center

 

Adopter Institution(s)

Robert H. Lurie Comprehensive Cancer Center of Northwestern University