Gene Tools
SNP Tools
Transcriptome Analysis
CGAP Data
Purchase CGAP Reagents
Related Links
Quick Links:
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GENES
Tools to Find Genes
- The Batch Gene Finder generates a gene list from a list of UniGene
cluster numbers, GenBank accessions, or LocusLink identifiers.
- The Clone Finder generates a list
of the most reliable clones from a list of UniGene clusters.
- The Gene Finder finds one gene or many genes depending on the
search criteria selected.
- The Gene
Ontology Browser (GO Browser)
classifies human and mouse genes by molecular function,
biological process, and cellular component.
- The
Nucleotide BLAST tool, with a CGAP interface, finds the most likely gene candidate(s) for a given
nucleotide sequence.
Tools to Find SNPS
- The SNP500Cancer
database
provides sequence and genotype assay information for SNPs useful in mapping complex diseases, such as cancer.
- The CGAP Genetic Annotation Initiative (GAI)
is a research program to explore and apply
technology for identification and characterization of genetic variation in genes important in cancer.
Transcriptome Analysis
Genes and UniGene:
- Please refer to
the UniGene home
page to understand the definition of a gene as used by CGAP throughout
this site.
- Be aware that, since UniGene is a dynamic database, genes and their cluster numbers
may change or disappear between UniGene builds. To minimize
confusion, we have assigned the
RefSeq accession number(s) associated with the gene. If there is no RefSeq number, the accession number
of the longest sequence belonging to the
cluster is shown.
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The CGAP Gene Info Page
For each gene, CGAP has developed a unique Gene Info Page that provides
information and links to various NCBI and NCI databases, including:
- UniGene, LocusLink,
OMIM, DTP search, cDNA Libraries, Cluster Assemblies, and SNPs
- Cytogenetic location and the Mitelman breakpoint information
- Protein similarities
- Human or mouse orthologs (curated and computed)
- Full-length MGC clones
- Functional classification in the Gene Ontology
- BioCarta and/or KEGG pathways
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