NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Mm #175) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
6101
  • Unidentified gi273e05
  • Transcribed locus
    		•     416422  
    		   2 1
    6102
  • BCL2/adenovirus E1B interacting protein 1, NIP2
    		•           1
    6103
  • Phosphatidylinositol 4-kinase, catalytic, beta polypeptide
  • Transcribed locus
    		•     441871  
    		   3 1
    6104
  • RIKEN cDNA 2400001E08 gene
    		•     30003 [**] 
    359278  
    		   7 F1
    7 F1    		 1
    6105
  • Mannosidase 1, alpha
    		•           1
    6106
  • Alkylglycerone phosphate synthase
    		•           1
    6107
  • Claudin 11
    		•     4425  
    		   3 A3|3 12.6 cM 1
    6108
  • Phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
    		•     253819  
    		   4 D1 1
    6109
  • Unidentified gi268d06
  • RIKEN cDNA D030022P06 gene
    		•     466714  
    		   7 F3 1
    6110
  • KCNA2 (Kcna2) mRNA, 3' UTR
    		•     39285  
    		   3 1
    6111
  • Transcribed locus, moderately similar to NP_037124.1 nucleophosmin 1 [Rattus norvegicus]
  • RIKEN cDNA A830023I12 gene
    		•     442122  
    		   5 F 1
    6112
  • Unidentified gi266b02
  • RIKEN cDNA 2900073G15 gene
    		•     261329 [**] 
    		   17 E1.3 1
    6113
  • RIKEN cDNA 0910001A06 gene
    		•           1
    6114
  • Transmembrane protein 50A
    		•     88349 [**] 
    		   4 D3|4 65.71 cM 1
    6115
  • TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
    		•     267998  
    		   17 A3.3 1
    6116
  • Suppressor of variegation 4-20 homolog 1 (Drosophila)
  • Transcribed locus
    		•     392650  
    395622  
    		   19
    19 A    		 1
    6117
  • NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
    		•     347976 [**] 
    		   7 F3 1
    6118
  • PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
    		•     51049 [**] 
    		   3 G1 1
    6119
  • Catenin (cadherin associated protein), beta 1
    		•     291928 [**] 
    		   9 F4|9 72.0 cM 1
    6120
  • Nuclear receptor subfamily 2, group F, member 2
  • Transcribed locus
    		•     404601  
    		   7 1
    6121
  • 98% protein similarity to: Fbxl5 protein [Mus musculus]
  • F-box and leucine-rich repeat protein 5
    		•     25794  
    		   5 B3 1
    6122
  • Ring finger protein 14
    		•     228903 [**] 
    		   18 B3|18 17.0 cM 1
    6123
  • Protein phosphatase 1, regulatory subunit 10
  • Mitochondrial ribosomal protein S18B
    		•     29385  
    29484  
    		   17 B1|17 20.5 cM
    17 B3    		 1
    6124
  • Single-stranded DNA binding protein 3
    		•     195635 [**] 
    		   4 C7 1
    6125
  • RIKEN cDNA C030011O14 gene
    		•     135018 [**] 
    		   3 H3 1
    6126
  • Glycoprotein 6 (platelet)
  • Transcribed locus, strongly similar to XP_001477531.1 PREDICTED: hypothetical protein [Mus musculus]
    		•     463724 [**] 
    		   7 1
    6127
  • Enhancer trap locus 4
  • Transcribed locus
    		•     237935 [**] 
    397986  
    		   2 A3
    2    		 1
    6128
  • PREDICTED: Mus musculus similar to ribosomal protein L28 (LOC100039731), mRNA
  • Ribosomal protein L28
  • Transcribed locus, strongly similar to NP_073188.2 ribosomal protein L28 [Rattus norvegicus]
    		•     379002 [**] 
    422265 [**] 
    		   7 A1|7 4.0 cM
    1    		 1
    6129
  • Dystroglycan 1
    		•     7524 [**] 
    		   9 F2|9 60.0 cM 1
    6130
  • Unidentified gi259c05
  • Tumor necrosis factor, alpha-induced protein 1 (endothelial)
    		•     386774  
    		   11 B5|11 45.1 cM 1
    6131
  • Unidentified gi259b01
  • Selenoprotein P, plasma, 1
    		•     392203 [**] 
    		   15 A1|15 5.9 cM 1
    6132
  • Inositol monophosphatase domain containing 1
    		•     218889 [**] 
    		   4 A1 1
    6133
  • CDC like kinase 4
  • Thyroid hormone receptor interactor 12
    		•     209265 [**] 
    		   1 F 1
    6134
  • Thymopoietin
    		•     159684 [**] 
    		   10 C2|10 49.0 cM 1
    6135
  • Unidentified gi255f10
  • Transcribed locus
    		•     401912  
    		   13 1
    6136
  • N-acetylglucosamine kinase
    		•     190650  
    		   6 D1 1
    6137
  • Unidentified gi255b02
  • Proteasome (prosome, macropain) subunit, beta type 7
    		•     389251 [**] 
    		   2 B|2 27.5 cM 1
    6138
  • Abhydrolase domain containing 14b
    		•     335427 [**] 
    		   9 F1 1
    6139
  • Sphingomyelin synthase 2
    		•     273360  
    		   3 G3 1
    6140
  • SUMO/sentrin specific peptidase 5
    		•           1
    6141
  • Nuclear receptor coactivator 2
    		•     2537 [**] 
    		   1 A3-A5|1 1.0 cM 1
    6142
  • RIKEN cDNA 2010012C16 gene
    		•     46623  
    		   6 C7 1
    6143
  • LIM and SH3 protein 1
    		•     271967 [**] 
    		   11 C-D|11 56.0 cM 1
    6144
  • Ferritin heavy chain 1
    		•     1776 [**] 
    		   19 A-C|19 2.0 cM 1
    6145
  • Expressed sequence AI593442
    		•     335160 [**] 
    		   9 A5.3 1
    6146
  • 76% protein similarity to: Harvey rat sarcoma oncogene, subgroup R [Mus musculus]
  • Harvey rat sarcoma oncogene, subgroup R
    		•     389894  
    		   7 B4|7 23.0 cM 1
    6147
  • 91% protein similarity to: thyroid hormone receptor interactor 12 [Mus musculus]
  • Thyroid hormone receptor interactor 12
    		•     209265 [**] 
    		   1 F 1
    6148
  • Unidentified gi251g11
  • Heterogeneous nuclear ribonucleoprotein U
    		•     426956 [**] 
    		   1 H4 1
    6149
  • Unidentified gi251g04
  • Transcribed locus
    		•     441714  
    		   9 1
    6150
  • Cyclin T1
  • Transcribed locus
    		•     384018  
    		   15 1
    6151
  • Transcribed locus
  • RIKEN cDNA A930001N09 gene
    		•     390978 [**] 
    		   17 B1 1
    6152
  • Translocating chain-associating membrane protein 1
    		•           1
    6153
  • Sfi1 homolog, spindle assembly associated (yeast)
    		•     320785 [**] 
    		   11 A1 1
    6154
  • RIKEN cDNA B230380D07 gene
    		•     170855 [**] 
    		   9 D 1
    6155
  • Transcribed locus
    		•     27091  
    		   16 1
    6156
  • Proline synthetase co-transcribed
    		•     277501  
    		   8 A3 1
    6157
  • Unidentified gi248b04
    		•           1
    6158
  • CTAGE family, member 5
    		•     438038  
    		   12 C1|12 23.0 cM 1
    6159
  • Ribosomal protein S11
    		•     196538 [**] 
    		   7 B4 1
    6160
  • R3H domain 1 (binds single-stranded nucleic acids)
  • Transcribed locus, strongly similar to XP_001479147.1 PREDICTED: hypothetical protein [Mus musculus]
    		•     459052  
    		   1 1
    6161
  • Ubinuclein 1
    		•     66356  
    		   16 A1|16 4.4 cM 1
    6162
  • Unidentified gi245f05
  • Open reading frame 34
    		•     391339  
    		   X F2 1
    6163
  • Kinesin light chain 1
    		•     278357 [**] 
    		   12 F1|12 57.0 cM 1
    6164
  • Unidentified gi244e01
  • Transcribed locus
    		•     440837  
    		   11 1
    6165
  • Transcribed locus
    		•     364747  
    		   16 1
    6166
  • Ribosomal protein S6 kinase polypeptide 3
  • Transcribed locus
    		•     392829  
    		   X F4 1
    6167
  • ADP-ribosylation factor-like 5B
    		•     174068 [**] 
    		   2 A2 1
    6168
  • Unidentified gi241d05
  • Adenomatosis polyposis coli 2
    		•     57247  
    		   10 B5-C2 1
    6169
  • Prickle homolog 4 (Drosophila)
  • Transcribed locus
    		•     392380  
    		   17 1
    6170
  • Filamin A interacting protein 1
    		•     23049  
    		   9 E2 1
    6171
  • G protein-coupled receptor kinase-interactor 2
    		•           1
    6172
  • Rotatin
    		•     772  
    		   18 E4 1
    6173
  • Oxysterol binding protein-like 8
    		•     220204 [**] 
    		   10 D1 1
    6174
  • RIKEN cDNA 2610101N10 gene
    		•     292742  
    		   9 E4 1
    6175
  • RIKEN cDNA A730011L01 gene
    		•     271946  
    		   11 E2 1
    6176
  • Sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
    		•           1
    6177
  • Ribosomal protein L23a
    		•     22723 [**] 
    		   11 B5 1
    6178
  • Leucine zipper transcription factor-like 1
  • Chemokine (C-C motif) receptor 9
    		•     378263 [**] 
    440604  
    		   9 F|9 71.1 cM
    9 F|9 71.2 cM    		 1
    6179
  • Follistatin-like 1
    		•     182434 [**] 
    		   16 B3|16 27.3 cM 1
    6180
  • Transformation related protein 53 binding protein 1
    		•     215389 [**] 
    		   2 E5 1
    6181
  • UBX domain containing 4
  • Transcribed locus
    		•     392225  
    		   12 1
    6182
  • Kelch-like 8 (Drosophila)
    		•           1
    6183
  • 66% protein similarity to: alpha-tubulin [Homo sapiens]
  • Tubulin, alpha 1B
  • Transcribed locus, strongly similar to XP_907317.1 PREDICTED: similar to tubulin, alpha 1 isoform 6 [Mus musculus]
    		•     392113  
    425730  
    		   15 F1
    12    		 1
    6184
  • Fibroblast growth factor receptor substrate 2
    		•           1
    6185
  • Transcribed locus
    		•     259830  
    		   13 1
    6186
  • Membrane associated guanylate kinase, WW and PDZ domain containing 1
  • Transcribed locus
    		•     408549  
    		   6 1
    6187
  • LEM domain containing 3
  • Transcribed locus
    		•     420296  
    		   10 1
    6188
  • Development and differentiation enhancing factor-like 1
    		•     77788 [**] 
    		   4 D3 1
    6189
  • Dedicator of cytokinesis 4
    		•           1
    6190
  • General transcription factor III C 1
    		•           1
    6191
  • H2A histone family, member Z
    		•     117541 [**] 
    		   3 G3 1
    6192
  • Endomucin
    		•     27343 [**] 
    		   3 G3 1
    6193
  • Transcribed locus
    		•     204891  
    		   17 1
    6194
  • CDNA sequence BC003331
    		•     222093 [**] 
    		   1 G1 1
    6195
  • 87% protein similarity to: Adaptor-related protein complex 2, mu 1 subunit, isoform b [Homo sapiens]
  • PREDICTED: Mus musculus similar to KIAA0109, transcript variant 1 (LOC100042719), mRNA
    		•     435447 [**] 
    		   2 C1.1 1
    6196
  • Membrane-associated ring finger (C3HC4) 2
    		•           1
    6197
  • Deoxythymidylate kinase
    		•     250332 [**] 
    		   1 D|1 38.0 cM 1
    6198
  • Protein tyrosine phosphatase, mitochondrial 1
  • Transcribed locus
    		•     23926 [**] 
    443110  
    		   2 E1
    2    		 1
    6199
  • Baculoviral IAP repeat-containing 4
    		•     259879 [**] 
    		   X A3-A5 1
    6200
  • Transcribed locus
    		•     150422  
    410131  
    		   12
    12    		 1


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