NbLib0053: NIDCD mouse organ of corti unnormalized (gi)

Last GRIST date: 03/20/2008

Related Publication: Gene expression profile of the mouse organ of Corti at the onset of hearing. Pompeia C, Hurle B, Belyantseva IA, Noben-Trauth K, Beisel K, Gao J, Buchoff P, Wistow G, Kachar B. Genomics. 2004. Jun;83(6):1000-11. View Publication

EST analysis of gene expression in the mouse organ of Corti at the onset of hearing
In order to study the transcriptional repertoire of the organ of Corti during the onset of hearing, a database of expressed sequence tags (EST) is being generated from in depth sequencing of a non-amplified mouse organ of Corti cDNA library. Inserts of cDNA clones were sequenced, analyzed and clustered using specially written software (NEIBank, http://neibank.nei.nih.gov). A preliminary collection of ESTs with description and human chromosomal location is presented as a web-based resource for public access. A paper with detailed description of the library and detailed analysis of the repertoire of genes expressed will soon be made available (Kachar et al., in preparation).

View Organ of Corti library comparison table: UniGene identifiers were used to compare the OC library with several other quantitative libraries. The values express the frequency of gene expression. Reference UniGene library identifiers are shown preceding the tissue from which the library was made.

View this library: Full List \| Indexed by Chromosomal Position \| Indexed by GO Term \| Tab Delimited	Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display.	View All Data \| << Previous Page \| Next Page >>

Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Mm #175)	Chromosome (UniGene)	Num. Clones
2801	Integrin alpha FG-GAP repeat containing 1			334685 [**]	8 C4\|8 39.0 cM	2
2802	Adducin 1 (alpha)			289106	5 B2\|5 20.0 cM	2
2803	Transmembrane protein 16F			392547	15 F1	2
2804	RAS protein activator like 2 Transcribed locus			459516 [**]	1	2
2805	Nuclear factor I/A Transcribed locus			450212	4	2
2806	Retinol dehydrogenase 10 (all-trans) Transcribed locus			441476	1	2
2807	GTPase activating RANGAP domain-like 1			292180 [**]	12 C1	2
2808	Prenylcysteine oxidase 1 Cytotoxic granule-associated RNA binding protein 1			423551 [**]	6 D2	2
2809	PHD finger protein 21A Transcribed locus			445728	2	2
2810	Pantothenate kinase 3			255044	11 A4	2
2811	Lipoma HMGIC fusion partner-like 2			316553	13 D1	2
2812	Insulin-like growth factor 1			268521 [**]	10 C1\|10 48.0 cM	2
2813	DNA segment, Chr 11, Wayne State University 47, expressed			239566	11 E2\|11 68.5 cM	2
2814	DENN/MADD domain containing 1A					2
2815	Beta-1,4-N-acetyl-galactosaminyl transferase 3 Transcribed locus			321840 452540	6 F1 6	2
2816	Predicted gene, EG329070 SH3 and PX domains 2A			297461	19 D2	2
2817	Ring finger protein 170			291906	8	2
2818	Unidentified gi149a06 Transcribed locus			440519	13	2
2819	Zinc finger protein 532			286232 [**]	18 E1	2
2820	Contactin associated protein-like 4					2
2821	Collagen, type IX, alpha 1			154662 [**]	1 A5\|1 15.0 cM	2
2822	ATPase, class V, type 10D					2
2823	RIKEN cDNA 1200016B10 gene					2
2824	Dihydropyrimidine dehydrogenase					2
2825	Unidentified gi131b01					2
2826	Transcribed locus			392689	11	2
2827	Phospholipase C, delta 4					2
2828	Synaptojanin 2 Serine active site containing 1			5548	17 A1\|17 3.3 cM	2
2829	Homeodomain interacting protein kinase 1			20827 [**]	3 F3	2
2830	Decorin			56769 [**]	10 C3\|10 55.0 cM	2
2831	Cylindromatosis (turban tumor syndrome)			24282 [**]	8 C3	2
2832	Nudix (nucleoside diphosphate linked moiety X)-type motif 2			28574 [**]	4 A5	2
2833	LIM domain containing preferred translocation partner in lipoma					2
2834	Doublecortin-like kinase 1			393242 [**]	3 D	2
2835	Pre B-cell leukemia transcription factor 1			43358 [**]	1 H2.3\|1 88.1 cM	2
2836	Mediator complex subunit 13			341886 [**]	11 C	2
2837	Rhabdomyosarcoma 2 associated transcript (non-coding RNA)			11171	10 C2\|10 50.0 cM	2
2838	B-box and SPRY domain containing			29808	4 C1	2
2839	Similar to EST: AW209139		AW209139 GeneNetwork			2
2840	Similar to EST: BQ567726		BQ567726 GeneNetwork			2
2841	Similar to EST: BQ567732 Transcribed locus		BQ567732 GeneNetwork	414164	17	2
2842	Similar to EST: BQ568091		BQ568091 GeneNetwork			2
2843	Similar to EST: BE693053 Cysteine-rich secretory protein LCCL domain containing 1		BE693053 GeneNetwork	289625 [**]	1	2
2844	Similar to EST: BE534641		BE534641 GeneNetwork			2
2845	Similar to EST: BQ570494		BQ570494 GeneNetwork			2
2846	74% protein similarity to: NY-REN-58 antigen [Homo sapiens] (Similar to EST: AW542246)		AW542246 GeneNetwork			2
2847	Similar to EST: CF553330		CF553330 GeneNetwork			2
2848	Similar to EST: BM898979 Transcribed locus Transcribed locus		BM898979 GeneNetwork	413591 445362	2 2	2
2849	Similar to EST: BQ570440		BQ570440 GeneNetwork			2
2850	Similar to EST: BQ569864		BQ569864 GeneNetwork			2
2851	Similar to EST: BB623834 Transcribed locus		BB623834 GeneNetwork	446112	1	2
2852	Similar to EST: BQ567807 Pleiotrophin		BQ567807 GeneNetwork	279690 [**]	6 B1\|6 13.5 cM	2
2853	Similar to EST: BQ569221 Pleiotrophin		BQ569221 GeneNetwork	279690 [**]	6 B1\|6 13.5 cM	2
2854	Similar to EST: BQ567051 Transcribed locus		BQ567051 GeneNetwork	451620	4	2
2855	Similar to EST: BY719041		BY719041 GeneNetwork			2
2856	Unidentified gi07a08					2
2857	Unidentified gi267c04					2
2858	Unidentified gi264b12					2
2859	Unidentified gi231e09					2
2860	Unidentified gi225b10					2
2861	Unidentified gi219c06					2
2862	Unidentified gi214c03					2
2863	Unidentified gi204h10					2
2864	Unidentified gi203d01					2
2865	Unidentified gi203b06					2
2866	Unidentified gi199g04					2
2867	Unidentified gi199a05					2
2868	Unidentified gi184c04					2
2869	Unidentified gi184b03					2
2870	Unidentified gi183a09					2
2871	Unidentified gi182c11					2
2872	Unidentified gi182a06					2
2873	Unidentified gi175e06					2
2874	Unidentified gi175d03					2
2875	Unidentified gi174b10					2
2876	Unidentified gi159a07					2
2877	Unidentified gi190d03					2
2878	Unidentified gi185d07					2
2879	Unidentified gi158c06					2
2880	Unidentified gi129h11					2
2881	Unidentified gi129e07					2
2882	Unidentified gi97a09					2
2883	Unidentified gi94b12					2
2884	Unidentified gi93a10					2
2885	Unidentified gi92a05					2
2886	100% protein similarity to: Transmembrane protease, serine 9 (Polyserase-1) (Polyserine protease-1) (Polyserase-I) [Contains: Serase-1; Serase-2; Serase-3]					2
2887	Unidentified gi169f09					2
2888	Unidentified gi167d11					2
2889	Unidentified gi160c05					2
2890	Unidentified gi159b12					2
2891	Unidentified gi159b01					2
2892	Unidentified gi159a10					2
2893	Unidentified gi70h01					2
2894	Unidentified gi70h03					2
2895	Unidentified gi67b04					2
2896	Unidentified gi38b08					2
2897	Unidentified gi21f05					2
2898	Mus musculus cDNA sequence BC064033 (BC064033), mRNA CDNA sequence BC064033	208164	NM_173375 GeneNetwork	257766	6 B1	1
2899	Mus musculus basic transcription factor 3 (Btf3), mRNA PREDICTED: Mus musculus similar to general transcription factor (LOC100041823), mRNA	218490	NM_145455 GeneNetwork	439777	1 D	1
2900	Mus musculus synaptosomal-associated protein 91 (Snap91), mRNA Synaptosomal-associated protein 91	20616	NM_013669 GeneNetwork	281651	9	1

<< Previous Page | Next Page >>
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84

Disclaimer: Some links from this site may link you to sites outside of NEIBank. NEIBank is not responsible for the content of any non-NEIBank site.

Please send questions/comments on NEIBank scientific content to neibank.comments@nei.nih.gov.
Technical questions/comments regarding the NEIBank website can be sent to neibank.webmaster@nei.nih.gov.